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F, Secondo A, Scorziello A, Pannaccione A, Viggiano D, Adornetto A, Molinaro P, Li XF, Lytton J, Di Renzo G, Annunziato L", "reference": { "type": "PubMed", "id": "18305240", "url": "https://pubmed.ncbi.nlm.nih.gov/18305240" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BUN9-1", "protein_name": "Sodium/potassium/calcium exchanger 2", "gene_name": "Slc24a2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BUN9", "url": "https://www.uniprot.org/uniprotkb/Q8BUN9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18305240", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role for mammalian neutral sphingomyelinase 2 in confluence-induced growth arrest of MCF7 cells.", "journal": "The Journal of biological chemistry", "date": "2004-06-11", "authors": "Marchesini Norma, Osta Walid, Bielawski Jacek, Luberto Chiara, Obeid Lina M, Hannun Yusuf A", "reference": { "type": "PubMed", "id": "15051724", "url": "https://pubmed.ncbi.nlm.nih.gov/15051724" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JJY3-1", "protein_name": "Sphingomyelin 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Role of palmitoylation in subcellular localization.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Tani M, Hannun YA", "reference": { "type": "PubMed", "id": "17272284", "url": "https://pubmed.ncbi.nlm.nih.gov/17272284" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JJY3-1", "protein_name": "Sphingomyelin phosphodiesterase 3", "gene_name": "Smpd3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JJY3", "url": "https://www.uniprot.org/uniprotkb/Q9JJY3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17272284", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of novel anionic phospholipid binding domains in neutral sphingomyelinase 2 with selective binding preference.", "journal": "The Journal of biological chemistry", "date": "2011", "authors": "Wu BX, Clarke CJ, Matmati N, Montefusco D, Bartke N, Hannun YA", "reference": { "type": "PubMed", "id": "21550973", "url": "https://pubmed.ncbi.nlm.nih.gov/21550973" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JJY3-1", "protein_name": "Sphingomyelin phosphodiesterase 3", "gene_name": "Smpd3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JJY3", "url": "https://www.uniprot.org/uniprotkb/Q9JJY3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 33, "end_pos": 33, "sequence_org": "R", "sequence_mut": "A", "comment": "Strongly decreases binding with phosphatidic acid and phosphatidylserine. Abolishes binding with phosphatidic acid and phosphatidylserine; when associated with 45-DEL-48. Strongly decreases sphingomyelin phosphodiesterase activity; when associated with 45-DEL-48. Abolishes sphingomyelin phosphodiesterase activity and locates at endoplasmic reticulum; when associated with 45-DEL-48 and 92-A-A-93.", "evidence": [ { "database": "UniProtKB", "id": "Q9JJY3", "url": "https://www.uniprot.org/uniprotkb/Q9JJY3" }, { "database": "PubMed", "id": "21550973", "url": "https://pubmed.ncbi.nlm.nih.gov/21550973" } ], "uniprot_canonical_ac": "Q9JJY3-1" }, { "start_pos": 45, "end_pos": 48, "sequence_org": "KRQR", "sequence_mut": "", "comment": "Strongly decreases binding with phosphatidic acid and phosphatidylserine. Abolishes binding with phosphatidic acid and phosphatidylserine; when associated with A-33. Strongly decreases sphingomyelin phosphodiesterase activity; when associated with A-33. 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Cell. 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of two amino acids in the C-terminal domain of mouse CRY2 essential for PER2 interaction.", "journal": "BMC Mol. Biol.", "date": "2010", "authors": "Ozber N, Baris I, Tatlici G, Gur I, Kilinc S, Unal EB, Kavakli IH", "reference": { "type": "PubMed", "id": "20840750", "url": "https://pubmed.ncbi.nlm.nih.gov/20840750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O54943-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "Per2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R194-1", "protein_name": "Cryptochrome-2", "gene_name": "Cry2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WTL8-1", "protein_name": "Basic helix-loop-helix ARNT-like protein 1", "gene_name": "Bmal1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O54943", "url": "https://www.uniprot.org/uniprotkb/O54943" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 501, "end_pos": 501, "sequence_org": "R", "sequence_mut": "Q", "comment": "Inhibits interaction with PER2. 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Abolishes repression by PER2 on transactivation activity. 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Med.", "date": "2014", "authors": "Noh Jong-Yun, Han Dong-Hee, Kim Mi-Hee, Ko Il-Gyu, Kim Sung-Eun, Park Noheon, Choe Han Kyoung, Kim Khae-Hawn, Kim Kyungjin, Kim Chang-Ju, Cho Sehyung", "reference": { "type": "PubMed", "id": "24603368", "url": "https://pubmed.ncbi.nlm.nih.gov/24603368" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O54943-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "Per2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35973-1", "protein_name": "Period circadian protein homolog 1", "gene_name": "Per1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UV55-1", "protein_name": "Nuclear receptor subfamily 1 group D member 1", "gene_name": "Nr1d1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WTL8-1", "protein_name": "Basic helix-loop-helix ARNT-like protein 1", "gene_name": "Bmal1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": 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King D P, Young M W, Weitz C J, Takahashi J S", "reference": { "type": "PubMed", "id": "9856465", "url": "https://pubmed.ncbi.nlm.nih.gov/9856465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O54943-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "Per2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35973-1", "protein_name": "Period circadian protein homolog 1", "gene_name": "Per1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UNS1-1", "protein_name": "Protein timeless homolog", "gene_name": "TIMELESS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9R1X4-1", "protein_name": "Protein timeless homolog", "gene_name": "Timeless", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O54943", "url": "https://www.uniprot.org/uniprotkb/O54943" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the murine Jak2 protein-tyrosine kinase and its role in interleukin 3 signal transduction.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1993", "authors": "Silvennoinen O, Witthuhn BA, Quelle FW, Cleveland JL, Yi T, Ihle JN", "reference": { "type": "PubMed", "id": "8378315", "url": "https://pubmed.ncbi.nlm.nih.gov/8378315" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q62120-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "Jak2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P01586-1", "protein_name": "Interleukin-3", "gene_name": "Il3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q62120", "url": "https://www.uniprot.org/uniprotkb/Q62120" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8378315", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Biophys. 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted disruption of inducible 6-phosphofructo-2-kinase results in embryonic lethality.", "journal": "Biochemical and biophysical research communications", "date": "2005", "authors": "Chesney J, Telang S, Yalcin A, Clem A, Wallis N, Bucala R", "reference": { "type": "PubMed", "id": "15845370", "url": "https://pubmed.ncbi.nlm.nih.gov/15845370" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2AUP5-1", "protein_name": "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3", "gene_name": "Pfkfb3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2AUP5", "url": "https://www.uniprot.org/uniprotkb/A2AUP5" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15845370", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Neurooncol.", "date": "2005", "authors": "Lee CJ, Chan WI, Scotting PJ", "reference": { "type": "PubMed", "id": "15981098", "url": "https://pubmed.ncbi.nlm.nih.gov/15981098" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q924A2-4", "protein_name": "Protein capicua homolog", "gene_name": "Cic", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96RK0-1", "protein_name": "Protein capicua homolog", "gene_name": "CIC", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q924A2", "url": "https://www.uniprot.org/uniprotkb/Q924A2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15981098", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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"uniprot_canonical_ac": "Q924A2-4", "protein_name": "Protein capicua homolog", "gene_name": "Cic", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0C7T6-1", "protein_name": "Ataxin-1-like", "gene_name": "Atxn1l", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P54254-1", "protein_name": "Ataxin-1", "gene_name": "Atxn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96RK0-1", "protein_name": "Protein capicua homolog", "gene_name": "CIC", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q924A2", "url": "https://www.uniprot.org/uniprotkb/Q924A2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28288114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of CHIP, a novel tetratricopeptide repeat-containing protein that interacts with heat shock proteins and negatively regulates chaperone functions.", "journal": "Mol. Cell. Biol.", "date": "1999", "authors": "Ballinger CA, Connell P, Wu Y, Hu Z, Thompson LJ, Yin LY, Patterson C", "reference": { "type": "PubMed", "id": "10330192", "url": "https://pubmed.ncbi.nlm.nih.gov/10330192" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUD1-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "Stub1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UNE7-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "STUB1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WUD1", "url": "https://www.uniprot.org/uniprotkb/Q9WUD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10330192", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CHIP is associated with Parkin, a gene responsible for familial Parkinson's disease, and enhances its ubiquitin ligase activity.", "journal": "Molecular cell", "date": "2002", "authors": "Imai Y, Soda M, Hatakeyama S, Akagi T, Hashikawa T, Nakayama KI, Takahashi R", "reference": { "type": "PubMed", "id": "12150907", "url": "https://pubmed.ncbi.nlm.nih.gov/12150907" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUD1-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "Stub1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15354-1", "protein_name": "Prosaposin receptor GPR37", "gene_name": "GPR37", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WUD1", "url": "https://www.uniprot.org/uniprotkb/Q9WUD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12150907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chaperone-dependent regulation of endothelial nitric-oxide synthase intracellular trafficking by the co-chaperone/ubiquitin ligase CHIP.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Jiang J, Cyr D, Babbitt RW, Sessa WC, Patterson C", "reference": { "type": "PubMed", "id": "14507928", "url": "https://pubmed.ncbi.nlm.nih.gov/14507928" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUD1-1", "protein_name": "E3 ubiquitin-protein ligase 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chaperoned ubiquitylation -- crystal structures of the CHIP U box E3 ubiquitin ligase and a CHIP-Ubc13-Uev1a complex.", "journal": "Mol. Cell", "date": "2005", "authors": "Zhang Minghao, Windheim Mark, Roe S Mark, Peggie Mark, Cohen Philip, Prodromou Chrisostomos, Pearl Laurence H", "reference": { "type": "PubMed", "id": "16307917", "url": "https://pubmed.ncbi.nlm.nih.gov/16307917" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUD1-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "Stub1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61089-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "Ube2n", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CZY3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 1", "gene_name": "Ube2v1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q13404-4", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 1", "gene_name": "UBE2V1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNE7-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "STUB1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WUD1", "url": "https://www.uniprot.org/uniprotkb/Q9WUD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16307917", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The ubiquitin ligase CHIP prevents SirT6 degradation through noncanonical ubiquitination.", "journal": "Mol. Cell. Biol.", "date": "2013", "authors": "Ronnebaum SM, Wu Y, McDonough H, Patterson C", "reference": { "type": "PubMed", "id": "24043303", "url": "https://pubmed.ncbi.nlm.nih.gov/24043303" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUD1-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "Stub1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N6T7-1", "protein_name": "NAD-dependent protein deacylase sirtuin-6", "gene_name": "SIRT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNE7-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "STUB1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WUD1", "url": "https://www.uniprot.org/uniprotkb/Q9WUD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 170, "end_pos": 170, "sequence_org": "K", "sequence_mut": "R", "comment": "Decreased ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "Q8N6T7", "url": "https://www.uniprot.org/uniprotkb/Q8N6T7" }, { "database": "PubMed", "id": "24043303", "url": "https://pubmed.ncbi.nlm.nih.gov/24043303" } ], "uniprot_canonical_ac": "Q8N6T7-1" }, { "start_pos": 260, "end_pos": 260, "sequence_org": "H", "sequence_mut": "Q", "comment": "Loss of ability to ubiquitinate FOXP3 and SIRT6. Abolishes STUB1-mediated degradation of CHRNA3. Abolishes autoubiquitination and ubiquitination of ICER-type isoforms of CREM. Reduces interaction, ubiquitination and proteasomal degradation of NFATC3. 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"Staphylococcus aureus infection initiates hypoxia-mediated STIP1 homology and U-box containing protein 1 upregulation to trigger osteomyelitis.", "journal": "Toxicon : official journal of the International Society on Toxinology", "date": "2024-09", "authors": "Cao Yuan, Chen Feng, Zhu Suyue, Zhu Dongsheng, Qi Han", "reference": { "type": "PubMed", "id": "39059559", "url": "https://pubmed.ncbi.nlm.nih.gov/39059559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUD1-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "Stub1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UNE7-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "STUB1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WUD1", "url": "https://www.uniprot.org/uniprotkb/Q9WUD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus 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Predicted gene, 20920; Predicted gene, 20931; Predicted gene, 21317; Predicted gene, 21366; Sycp3 like Y-linked", "gene_name": "Gm20894; Gm20905; Gm21409; Sly", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A0A087WRK1", "url": "https://www.uniprot.org/uniprotkb/A0A087WRK1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28475176", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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stabilization and translational silencing of cyclooxygenase-2 by a novel RNA binding protein, CUGBP2.", "journal": "Molecular cell", "date": "2003", "authors": "Mukhopadhyay D, Houchen CW, Kennedy S, Dieckgraefe BK, Anant S", "reference": { "type": "PubMed", "id": "12535526", "url": "https://pubmed.ncbi.nlm.nih.gov/12535526" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z0H4-1", "protein_name": "CUGBP Elav-like family member 2", "gene_name": "Celf2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q792H5-1", "protein_name": "CUGBP Elav-like family member 2", "gene_name": "Celf2", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z0H4", "url": "https://www.uniprot.org/uniprotkb/Q9Z0H4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12535526", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Courtney W, Riehl Terrence E, Stenson William F, Morrison Aubrey R, Arumugam Thiruvengadam, Dieckgraefe Brian K, Anant Shrikant", "reference": { "type": "PubMed", "id": "15358864", "url": "https://pubmed.ncbi.nlm.nih.gov/15358864" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z0H4-1", "protein_name": "CUGBP Elav-like family member 2", "gene_name": "Celf2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z0H4", "url": "https://www.uniprot.org/uniprotkb/Q9Z0H4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15358864", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Genet.", "date": "1999", "authors": "Lu X, Timchenko NA, Timchenko LT", "reference": { "type": "PubMed", "id": "9887331", "url": "https://pubmed.ncbi.nlm.nih.gov/9887331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z0H4-1", "protein_name": "CUGBP Elav-like family member 2", "gene_name": "Celf2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z0H4", "url": "https://www.uniprot.org/uniprotkb/Q9Z0H4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9887331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]