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"database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30097509", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Myonectin Is an Exercise-Induced Myokine That Protects the Heart From Ischemia-Reperfusion Injury.", "journal": "Circulation research", "date": "2018", "authors": "Otaka N, Shibata R, Ohashi K, Uemura Y, Kambara T, Enomoto T, Ogawa H, Ito M, Kawanishi H, Maruyama S, Joki Y, Fujikawa Y, Narita S, Unno K, Kawamoto Y, Murate T, Murohara T, Ouchi N", "reference": { "type": "PubMed", "id": "30566056", "url": "https://pubmed.ncbi.nlm.nih.gov/30566056" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PGN1-1", "protein_name": "Erythroferrone", "gene_name": "Erfe", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15337-2", "protein_name": "Cyclic AMP-responsive element-binding protein 1", "gene_name": "Creb1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "D4AB34-1", "protein_name": "Erythroferrone", "gene_name": "Erfe", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q01147-2", "protein_name": "Cyclic AMP-responsive element-binding protein 1", "gene_name": "Creb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30566056", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Erythroferrone lowers hepcidin by sequestering BMP2/6 heterodimer from binding to the BMP type I receptor ALK3.", "journal": "Blood", "date": "2020", "authors": "Wang CY, Xu Y, Traeger L, Dogan DY, Xiao X, Steinbicker AU, Babitt JL", "reference": { "type": "PubMed", "id": "31800957", "url": "https://pubmed.ncbi.nlm.nih.gov/31800957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PGN1-1", "protein_name": "Erythroferrone", "gene_name": "Erfe", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P37172-1", "protein_name": "Activin receptor type-1", "gene_name": "Acvr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q04771-1", "protein_name": "Activin receptor type-1", "gene_name": "ACVR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20722-1", "protein_name": "Bone morphogenetic protein 6", "gene_name": "Bmp6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22004-1", "protein_name": "Bone morphogenetic protein 6", "gene_name": "BMP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12643-1", "protein_name": "Bone morphogenetic protein 2", "gene_name": "BMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36894-1", "protein_name": "Bone morphogenetic protein receptor type-1A", "gene_name": "BMPR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4G0M1-1", "protein_name": "Erythroferrone", "gene_name": "ERFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36895-1", "protein_name": "Bone morphogenetic protein receptor type-1A", "gene_name": "Bmpr1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P21274-1", "protein_name": "Bone morphogenetic protein 2", "gene_name": "Bmp2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.31800957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein Modifications Critical for Myonectin/Erythroferrone Secretion and Oligomer Assembly.", "journal": "Biochemistry", "date": "2020", "authors": "Stewart AN, Little HC, Clark DJ, Zhang H, Wong GW", "reference": { "type": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PGN1-1", "protein_name": "Erythroferrone", "gene_name": "Erfe", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 229, "start_aa": "Asn", "end_pos": 229, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn229", 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"uniprot_canonical_ac": "Q6PGN1-1" } ], "mutagenesis": [ { "start_pos": 142, "end_pos": 142, "sequence_org": "C", "sequence_mut": "A", "comment": "Enhances secretion and favors trimer formation.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" } ], "uniprot_canonical_ac": "Q6PGN1-1" }, { "start_pos": 194, "end_pos": 194, "sequence_org": "C", "sequence_mut": "A", "comment": "Enhances secretion and reduces the formation of higher molecular weight oligomers.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" } ], "uniprot_canonical_ac": "Q6PGN1-1" }, { "start_pos": 229, "end_pos": 229, "sequence_org": "N", "sequence_mut": "Q", "comment": "Abolishes glycosylation. Abolishes secretion; when associated with Q-281.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" } ], "uniprot_canonical_ac": "Q6PGN1-1" }, { "start_pos": 273, "end_pos": 273, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes secretion.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" } ], "uniprot_canonical_ac": "Q6PGN1-1" }, { "start_pos": 278, "end_pos": 278, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes secretion.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" } ], "uniprot_canonical_ac": "Q6PGN1-1" }, { "start_pos": 281, "end_pos": 281, "sequence_org": "N", "sequence_mut": "Q", "comment": "Abolishes glycosylation. Abolishes secretion; when associated with Q-229.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" } ], "uniprot_canonical_ac": "Q6PGN1-1" }, { "start_pos": 292, "end_pos": 292, "sequence_org": "N", "sequence_mut": "Q", "comment": "No effect on secretion.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": "32602701", "url": "https://pubmed.ncbi.nlm.nih.gov/32602701" } ], "uniprot_canonical_ac": "Q6PGN1-1" }, { "start_pos": 319, "end_pos": 319, "sequence_org": "N", "sequence_mut": "Q", "comment": "Abolishes secretion as a result of protein misfolding, protein is retained in the endoplasmic reticulum.", "evidence": [ { "database": "UniProtKB", "id": "Q6PGN1", "url": "https://www.uniprot.org/uniprotkb/Q6PGN1" }, { "database": "PubMed", "id": 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"Mutations in EOGT confirm the genetic heterogeneity of autosomal-recessive Adams-Oliver syndrome.", "journal": "Am. J. Hum. Genet.", "date": "2013", "authors": "Shaheen R, Aglan M, Keppler-Noreuil K, Faqeih E, Ansari S, Horton K, Ashour A, Zaki MS, Al-Zahrani F, Cueto-Gonzalez AM, Abdel-Salam G, Temtamy S, Alkuraya FS", "reference": { "type": "PubMed", "id": "23522784", "url": "https://pubmed.ncbi.nlm.nih.gov/23522784" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BYW9-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "Eogt", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5NDL2-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "EOGT", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BYW9", "url": "https://www.uniprot.org/uniprotkb/Q8BYW9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "snv": [ { "evidence": [ { "id": "rs587776993", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs587776993" }, { "id": "rs587776993", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs587776993" }, { "id": "23522784", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23522784" }, { "id": "rs587776993", "database": "COSMIC", "url": "https://www.ensembl.org/homo_sapiens/Variation/Explore?v=rs587776993" } ], "glycoeffect": [], "start_pos": 207, "end_pos": 207, "sequence_org": "W", "sequence_mut": "S", "comment": "Somatic mutation passed 1 filters: glycogene of type=glycogene, glycosyltransferase.", "chr_id": "3", "chr_pos": "69004378", "ref_nt": "G", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "W207", "disease": [ { "disease_id": "DOID:0060227", "recommended_name": { "id": "DOID:0060227", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0060227", "name": "Adams-Oliver syndrome", "description": "A syndrome 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Cell Biol.", "date": "2002", "authors": "van der Flier A, Kuikman I, Kramer D, Geerts D, Kreft M, Takafuta T, Shapiro SS, Sonnenberg A", "reference": { "type": "PubMed", "id": "11807098", "url": "https://pubmed.ncbi.nlm.nih.gov/11807098" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80X90-1", "protein_name": "Filamin-B", "gene_name": "Flnb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHX6-1", "protein_name": "Filamin-C", "gene_name": "Flnc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BTM8-1", "protein_name": "Filamin-A", "gene_name": "Flna", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75369-1", "protein_name": "Filamin-B", "gene_name": "FLNB", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Filamin A and filamin B are co-expressed within neurons during periods of neuronal migration and can physically interact.", "journal": "Hum. Mol. Genet.", "date": "2002", "authors": "Sheen VL, Feng Y, Graham D, Takafuta T, Shapiro SS, Walsh CA", "reference": { "type": "PubMed", "id": "12393796", "url": "https://pubmed.ncbi.nlm.nih.gov/12393796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80X90-1", "protein_name": "Filamin-B", "gene_name": "Flnb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O75369-1", "protein_name": "Filamin-B", "gene_name": "FLNB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21333-1", "protein_name": "Filamin-A", "gene_name": "FLNA", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80X90", "url": "https://www.uniprot.org/uniprotkb/Q80X90" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12393796", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RefilinB (FAM101B) targets filamin A to organize perinuclear actin networks and regulates nuclear shape.", "journal": "Proc. Natl. Acad. Sci. 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Nakano K, Honda K, Kitamura T, Imoto I, Matsushita N, Sasaki T", "reference": { "type": "PubMed", "id": "23890175", "url": "https://pubmed.ncbi.nlm.nih.gov/23890175" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80X90-1", "protein_name": "Filamin-B", "gene_name": "Flnb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHX6-1", "protein_name": "Filamin-C", "gene_name": "Flnc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BTM8-1", "protein_name": "Filamin-A", "gene_name": "Flna", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IY33-1", "protein_name": "MICAL-like protein 2", "gene_name": "MICALL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3TN34-1", "protein_name": "MICAL-like protein 2", "gene_name": "Micall2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P21333-1", "protein_name": "Filamin-A", "gene_name": "FLNA", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": 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proteins, Cfm1 and Cfm2, are essential for the formation of cartilaginous skeletal elements.", "journal": "Hum. 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"date": "2015", "authors": "Thottakara T, Friedrich FW, Reischmann S, Braumann S, Schlossarek S, Kramer E, Juhr D, Schluter H, van der Velden J, Munch J, Patten M, Eschenhagen T, Moog-Lutz C, Carrier L", "reference": { "type": "PubMed", "id": "26343497", "url": "https://pubmed.ncbi.nlm.nih.gov/26343497" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80X90-1", "protein_name": "Filamin-B", "gene_name": "Flnb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K0L0-1", "protein_name": "Ankyrin repeat and SOCS box protein 2", "gene_name": "Asb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P31001-1", "protein_name": "Desmin", "gene_name": "Des", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80X90", "url": "https://www.uniprot.org/uniprotkb/Q80X90" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { 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Does not affect localization of isoform 1 to the Z line or its interaction with DES.", "evidence": [ { "database": "UniProtKB", "id": "Q8K0L0", "url": "https://www.uniprot.org/uniprotkb/Q8K0L0" }, { "database": "PubMed", "id": "26343497", "url": "https://pubmed.ncbi.nlm.nih.gov/26343497" }, { "database": "PubMed", "id": "19300455", "url": "https://pubmed.ncbi.nlm.nih.gov/19300455" } ], "uniprot_canonical_ac": "Q8K0L0-1" } ], "record_id": "pubmed.26343497", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3V3R4-1", "protein_name": "Integrin alpha-1", "gene_name": "Itga1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JI18-1", "protein_name": "Low-density lipoprotein receptor-related protein 1B", "gene_name": "Lrp1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61595-1", "protein_name": "Kinectin", "gene_name": "Ktn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CBY3-1", "protein_name": "Leukocyte receptor cluster member 8 homolog", "gene_name": "Leng8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C8YR32-1", "protein_name": "Lipoxygenase homology domain-containing protein 1", "gene_name": "Loxhd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80WQ8-1", "protein_name": "Mis18-binding protein 1", "gene_name": "Mis18bp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6H6E2-1", "protein_name": "Multimerin-2", "gene_name": "Mmrn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z176-1", 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"gene_name": "Grid1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6A078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "Cep290", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35161-1", "protein_name": "Cadherin EGF LAG seven-pass G-type receptor 1", "gene_name": "Celsr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PDS3-1", "protein_name": "NAD(+) hydrolase SARM1", "gene_name": "Sarm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "F8VPZ9-1", "protein_name": "BRD4-interacting chromatin-remodeling complex-associated protein", "gene_name": "Bicra", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CHQ0-1", "protein_name": "F-box only protein 4", "gene_name": "Fbxo4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TT18-1", "protein_name": "Activating transcription factor 7-interacting protein 1", "gene_name": "Atf7ip", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CXJ4-1", "protein_name": "Mitochondrial potassium channel ATP-binding 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"Mouse" }, { "uniprot_canonical_ac": "A2AJ76-1", "protein_name": "Hemicentin-2", "gene_name": "Hmcn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99KP6-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "Prpf19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2AQ19-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "Rtf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97494-1", "protein_name": "Glutamate--cysteine ligase catalytic subunit", "gene_name": "Gclc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3V0T4-1", "protein_name": "Integrin alpha-D", "gene_name": "Itgad", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60651-1", "protein_name": "Killer cell lectin-like receptor 4", "gene_name": "Klra4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3S4-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 19", "gene_name": "Map3k19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2AQP0-1", "protein_name": "Myosin-7B", "gene_name": "Myh7b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8L5-1", "protein_name": "Receptor-type tyrosine-protein phosphatase F", "gene_name": "Ptprf", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z180-1", "protein_name": "SET-binding protein", "gene_name": "Setbp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SSZ5-1", "protein_name": "Tensin-3", "gene_name": "Tns3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5H8C4-1", "protein_name": "Intermembrane lipid transfer protein VPS13A", "gene_name": "Vps13a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BLN6-1", "protein_name": "Protein unc-80 homolog", "gene_name": "Unc80", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64514-1", "protein_name": "Tripeptidyl-peptidase 2", "gene_name": "Tpp2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99LG0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 16", "gene_name": "Usp16", "tax_name": "Mouse" }, { 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"gene_name": "Cep350", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q70KF4-1", "protein_name": "Cardiomyopathy-associated protein 5", "gene_name": "Cmya5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97855-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3bp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PAR5-1", "protein_name": "GTPase-activating protein and VPS9 domain-containing protein 1", "gene_name": "Gapvd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62177-1", "protein_name": "Semaphorin-3B", "gene_name": "Sema3b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z280-1", "protein_name": "Phospholipase D1", "gene_name": "Pld1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CIK8-1", "protein_name": "E3 ubiquitin-protein ligase RFWD3", "gene_name": "Rfwd3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08460-1", "protein_name": "Calcium-activated potassium channel subunit alpha-1", "gene_name": "Kcnma1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PU8-1", "protein_name": "ATP-dependent RNA helicase DHX30", "gene_name": "Dhx30", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TJZ6-1", "protein_name": "Protein FAM98A", "gene_name": "Fam98a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2ARZ3-1", "protein_name": "Fibrous sheath-interacting protein 2", "gene_name": "Fsip2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P25206-1", "protein_name": "DNA replication licensing factor MCM3", "gene_name": "Mcm3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5H8-1", "protein_name": "NAD kinase 2, mitochondrial", "gene_name": "Nadk2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88351-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase subunit beta", "gene_name": "Ikbkb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CH77-1", "protein_name": "Neuron navigator 1", "gene_name": "Nav1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q921M4-1", "protein_name": "Golgin subfamily A member 2", "gene_name": "Golga2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TBD2-1", "protein_name": "Rho GTPase-activating protein 45", "gene_name": "Arhgap45", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5DU41-1", "protein_name": "Volume-regulated anion channel subunit LRRC8B", "gene_name": "Lrrc8b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P54276-1", "protein_name": "DNA mismatch repair protein Msh6", "gene_name": "Msh6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2A6A1-1", "protein_name": "G patch domain-containing protein 8", "gene_name": "Gpatch8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P08775-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "Polr2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R0X5-1", "protein_name": "X-linked retinitis pigmentosa GTPase regulator", "gene_name": "Rpgr", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q743-1", "protein_name": "Cilia- and flagella-associated protein 251", "gene_name": "Cfap251", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UHR0-1", "protein_name": "BAH and coiled-coil domain-containing protein 1", "gene_name": "Bahcc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97857-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "Adamts1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2G6-1", "protein_name": "Coiled-coil domain-containing protein 80", "gene_name": "Ccdc80", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BPI1-1", "protein_name": "Protein kintoun", "gene_name": "Dnaaf2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K363-1", "protein_name": "ATP-dependent RNA helicase DDX18", "gene_name": "Ddx18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q06194-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NVD0-1", "protein_name": "FRAS1-related extracellular matrix protein 2", "gene_name": "Frem2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P1G0-1", "protein_name": "HEAT repeat-containing protein 6", "gene_name": "Heatr6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09012-1", "protein_name": "Peroxisomal targeting signal 1 receptor", "gene_name": "Pex5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R0Z9-1", "protein_name": "Rho GTPase-activating protein 7", "gene_name": "Dlc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5FWH7-1", "protein_name": "Zinc transporter ZIP12", "gene_name": "Slc39a12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64701-1", "protein_name": "Retinoblastoma-like protein 1", "gene_name": "Rbl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QYZ3-1", "protein_name": "Sperm motility kinase 2B", "gene_name": "Smok2b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CJ67-1", "protein_name": "Double-stranded RNA-binding protein Staufen homolog 2", "gene_name": "Stau2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O55098-1", "protein_name": "Serine/threonine-protein kinase 10", "gene_name": "Stk10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ESJ0-1", "protein_name": "Exportin-4", "gene_name": "Xpo4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62381-1", "protein_name": "Tolloid-like protein 1", "gene_name": "Tll1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09053-1", "protein_name": "Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN", "gene_name": "Wrn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZPY7-1", "protein_name": "Lysine-specific demethylase 3B", "gene_name": "Kdm3b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z1J2-1", "protein_name": "Serine/threonine-protein kinase Nek4", "gene_name": "Nek4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GQT1-1", "protein_name": "Alpha-2-macroglobulin-P", "gene_name": "A2m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88990-1", "protein_name": "Alpha-actinin-3", "gene_name": "Actn3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NXI6-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 2", "gene_name": "Rprd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C4V1-1", "protein_name": "Rho GTPase-activating protein 24", "gene_name": "Arhgap24", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VD76-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "Gtf2h3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JIS7-1", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1F", "gene_name": "Cacna1f", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64152-1", "protein_name": "Transcription factor BTF3", "gene_name": "Btf3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D6W7-1", "protein_name": "CD164 sialomucin-like 2 protein", "gene_name": "Cd164l2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80Z25-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "Ofd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q811G0-1", "protein_name": "Protein PTHB1", "gene_name": "Bbs9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XG71-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "Utp20", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q76LL6-1", "protein_name": "FH1/FH2 domain-containing protein 3", "gene_name": "Fhod3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TTY5-1", "protein_name": "Keratin, type II cytoskeletal 2 epidermal", "gene_name": "Krt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TV8-1", "protein_name": "CLIP-associating protein 1", "gene_name": "Clasp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61545-1", "protein_name": "RNA-binding protein EWS", "gene_name": "Ewsr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5DU25-1", "protein_name": "IQ motif and SEC7 domain-containing protein 2", "gene_name": "Iqsec2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3V1M1-1", "protein_name": "Immunoglobulin superfamily member 10", "gene_name": "Igsf10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6RT24-1", "protein_name": "Centromere-associated protein E", "gene_name": "Cenpe", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q2PZL6-1", "protein_name": "Protocadherin Fat 4", "gene_name": "Fat4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q07104-1", "protein_name": "Growth/differentiation factor 3", "gene_name": "Gdf3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62036-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "Cep131", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70468-1", "protein_name": "Myosin-binding protein C, cardiac-type", "gene_name": "Mybpc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TJ7-1", "protein_name": "Histone lysine demethylase PHF8", "gene_name": "Phf8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "B2RXS4-1", "protein_name": "Plexin-B2", "gene_name": "Plxnb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZPF3-1", "protein_name": "Rho guanine nucleotide exchange factor TIAM2", "gene_name": "Tiam2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P2K6-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3A", "gene_name": "Ppp4r3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q05D44-1", "protein_name": "Eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ESK9-1", "protein_name": "RB1-inducible coiled-coil protein 1", "gene_name": "Rb1cc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CXK9-1", "protein_name": "RNA-binding protein 33", "gene_name": "Rbm33", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35285-1", "protein_name": "Ras-related protein Rab-22A", "gene_name": "Rab22a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70335-1", "protein_name": "Rho-associated protein kinase 1", "gene_name": "Rock1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P8X1-1", "protein_name": "Sorting nexin-6", "gene_name": "Snx6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3V0F0-1", "protein_name": "RIMS-binding protein 3", "gene_name": "Rimbp3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UH53-1", "protein_name": "Protein sidekick-1", "gene_name": "Sdk1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P14733-1", "protein_name": "Lamin-B1", "gene_name": "Lmnb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61656-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "Ddx5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QWI6-1", "protein_name": "SRC kinase signaling inhibitor 1", "gene_name": "Srcin1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08749-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "Dld", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CH25-1", "protein_name": "SAFB-like transcription modulator", "gene_name": "Sltm", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80U12-1", "protein_name": "Small G protein signaling modulator 2", "gene_name": "Sgsm2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6H584-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "Col6a5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BUM9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 43", "gene_name": "Usp43", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80UV9-1", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "Taf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q569Z6-1", "protein_name": "Thyroid hormone receptor-associated protein 3", "gene_name": "Thrap3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q69ZR9-1", "protein_name": "Protein TASOR", "gene_name": "Tasor", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "B2RQL2-1", "protein_name": "Storkhead-box protein 1", "gene_name": "Stox1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61542-1", "protein_name": "StAR-related lipid transfer protein 3", "gene_name": "Stard3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TF6-1", "protein_name": "StAR-related lipid transfer protein 9", "gene_name": "Stard9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P99024-1", "protein_name": "Tubulin beta-5 chain", "gene_name": "Tubb5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q0P678-1", "protein_name": "Zinc finger CCCH domain-containing protein 18", "gene_name": "Zc3h18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q4U4S6-1", "protein_name": "Xin actin-binding repeat-containing protein 2", "gene_name": "Xirp2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1V4-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 11", "gene_name": "Adam11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05063-1", "protein_name": "Fructose-bisphosphate aldolase C", "gene_name": "Aldoc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08696-1", "protein_name": "Forkhead box protein M1", "gene_name": "Foxm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64739-2", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "Col11a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R092-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "Hsd17b6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHN7-1", "protein_name": "Adhesion G protein-coupled receptor V1", "gene_name": "Adgrv1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDI6-1", "protein_name": "Coiled-coil domain-containing protein 158", "gene_name": "Ccdc158", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99NF1-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "Bco2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K2J4-1", "protein_name": "Coiled-coil domain-containing protein 14", "gene_name": "Ccdc14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERD7-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "Tubb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91ZI0-1", "protein_name": "Cadherin EGF LAG seven-pass G-type receptor 3", "gene_name": "Celsr3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C3J5-1", "protein_name": "Dedicator of cytokinesis protein 2", "gene_name": "Dock2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CFC7-1", "protein_name": "CLK4-associating serine/arginine rich protein", "gene_name": "Clasrp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q640L3-1", "protein_name": "Cell cycle progression protein 1", "gene_name": "Ccpg1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3V1H1-1", "protein_name": "Cytoskeleton-associated protein 2", "gene_name": "Ckap2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99JH7-1", "protein_name": "Calsyntenin-3", "gene_name": "Clstn3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91XD7-1", "protein_name": "Protein disulfide isomerase Creld1", "gene_name": "Creld1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3V0Q1-1", "protein_name": "Dynein axonemal heavy chain 12", "gene_name": "Dnah12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHE6-1", "protein_name": "Dynein axonemal heavy chain 5", "gene_name": "Dnah5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5F226-1", "protein_name": "Protocadherin Fat 2", "gene_name": "Fat2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q922R8-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "Pdia6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JM99-1", "protein_name": "Proteoglycan 4", "gene_name": "Prg4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q555-1", "protein_name": "E3 ubiquitin-protein ligase RNF213", "gene_name": "Rnf213", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CG65-1", "protein_name": "SCO-spondin", "gene_name": "Sspo", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TY4-1", "protein_name": "Suppression of tumorigenicity 18 protein", "gene_name": "St18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BNE1-1", "protein_name": "TRPM8 channel-associated factor 1", "gene_name": "Tcaf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D0I9-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "Rars1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z1U7-1", "protein_name": "Transmembrane protein 233", "gene_name": "Tmem233", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P27106-1", "protein_name": "Anti-Muellerian hormone", "gene_name": "Amh", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q4U2R1-1", "protein_name": "E3 ubiquitin-protein ligase HERC2", "gene_name": "Herc2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QXZ0-1", "protein_name": "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4", "gene_name": "Macf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P30204-1", "protein_name": "Macrophage scavenger receptor types I and II", "gene_name": "Msr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q04690-1", "protein_name": "Neurofibromin", "gene_name": "Nf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TPH6-1", "protein_name": "E3 ubiquitin-protein ligase MYCBP2", "gene_name": "Mycbp2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99MZ6-1", "protein_name": "Unconventional myosin-VIIb", "gene_name": "Myo7b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PDG8-1", "protein_name": "Vacuolar fusion protein MON1 homolog A", "gene_name": "Mon1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P14873-1", "protein_name": "Microtubule-associated protein 1B", "gene_name": "Map1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1L5-1", "protein_name": "Microtubule-associated serine/threonine-protein kinase 1", "gene_name": "Mast1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3KNY0-1", "protein_name": "Immunoglobulin-like and fibronectin type III domain-containing protein 1", "gene_name": "Igfn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PDM1-1", "protein_name": "Male-specific lethal 1 homolog", "gene_name": "Msl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WUX5-1", "protein_name": "Inositol 1,4,5-triphosphate receptor associated 1", "gene_name": "Irag1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WUA3-1", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6A026-1", "protein_name": "Sister chromatid cohesion protein PDS5 homolog A", "gene_name": "Pds5a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TMM9-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "Tubb2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BH01-1", "protein_name": "Solute carrier family 9 member D1", "gene_name": "Slc9d1; Tmco3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E5FYH1-1", "protein_name": "Protein TOPAZ1", "gene_name": "Topaz1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PCX9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM37", "gene_name": "Trim37", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CJ19-1", "protein_name": "[F-actin]-monooxygenase MICAL3", "gene_name": "Mical3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5HZI1-1", "protein_name": "Microtubule-associated tumor suppressor 1 homolog", "gene_name": "Mtus1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QXN0-1", "protein_name": "Protein Shroom3", "gene_name": "Shroom3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E2JF22-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "Piezo1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSY8-1", "protein_name": "Shugoshin 2A", "gene_name": "Sgo2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99LH1-1", "protein_name": "Nucleolar GTP-binding protein 2", "gene_name": "Gnl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QUK4-1", "protein_name": "Baculoviral IAP repeat-containing protein 1b", "gene_name": "Naip2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHK9-1", "protein_name": "ATP-dependent DNA/RNA helicase DHX36", "gene_name": "Dhx36", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70585-1", "protein_name": "Dystrobrevin beta", "gene_name": "Dtnb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2AIV2-1", "protein_name": "Protein virilizer homolog", "gene_name": "Virma", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q0VGY8-1", "protein_name": "Protein TANC1", "gene_name": "Tanc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UEN2-1", "protein_name": "Shieldin complex subunit 2", "gene_name": "Shld2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BHG1-1", "protein_name": "Nardilysin", "gene_name": "Nrdc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P63056-1", "protein_name": "Noelin-3", "gene_name": "Olfm3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q14AW5-1", "protein_name": "Protein NSUN7", "gene_name": "Nsun7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q05793-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "Hspg2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22777-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "Serpine1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PB44-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 23", "gene_name": "Ptpn23", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RL51-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein", "gene_name": "Gstcd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18528-1", "protein_name": "Ig heavy chain V region 6.96", "gene_name": "", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URD3-1", "protein_name": "Sarcolemmal membrane-associated protein", "gene_name": "Slmap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BKU8-1", "protein_name": "Transmembrane protein 87B", "gene_name": "Tmem87b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68372-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "Tubb4b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UYK3-1", "protein_name": "TBC1 domain family member 9", "gene_name": "Tbc1d9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TTJ4-1", "protein_name": "Uncharacterized protein C8orf48 homolog", "gene_name": "", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2AKX3-1", "protein_name": "Helicase senataxin", "gene_name": "Setx", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWR6-1", "protein_name": "Nesprin-1", "gene_name": "Syne1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6KAQ7-1", "protein_name": "ZZ-type zinc finger-containing protein 3", "gene_name": "Zzz3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BZ47-1", "protein_name": "Zinc finger protein 609", "gene_name": "Zfp609; Znf609", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q924D0-1", "protein_name": "NAD(P)H oxidoreductase RTN4IP1, mitochondrial", "gene_name": "Rtn4ip1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1X4-1", "protein_name": "Protein timeless homolog", "gene_name": "Timeless", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PP2-1", "protein_name": "Zinc finger protein 318", "gene_name": "Zfp318; Znf318", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PL5-1", "protein_name": "Ribosome-binding protein 1", "gene_name": "Rrbp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99KW3-3", "protein_name": "TRIO and F-actin-binding protein", "gene_name": "Triobp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYR5-1", "protein_name": "Calcium-dependent secretion activator 2", "gene_name": "Cadps2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UGY8-1", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 3", "gene_name": "Arfgef3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TJ1-1", "protein_name": "Calcium-dependent secretion activator 1", "gene_name": "Cadps", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WV69-1", "protein_name": "Dematin", "gene_name": "Dmtn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P61460-1", "protein_name": "GATOR1 complex protein DEPDC5", "gene_name": "Depdc5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q921C3-1", "protein_name": "Bromodomain and WD repeat-containing protein 1", "gene_name": "Brwd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K387-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "Usp45", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P39447-1", "protein_name": "Tight junction protein 1", "gene_name": "Tjp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": 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S, Costello I, Srinivas S, Bikoff E, Robertson E", "reference": { "type": "PubMed", "id": "21350012", "url": "https://pubmed.ncbi.nlm.nih.gov/21350012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BLU0-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT2", "gene_name": "Flrt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BGT1-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "gene_name": "Flrt3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BLU0", "url": "https://www.uniprot.org/uniprotkb/Q8BLU0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21350012", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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Dent. Res.", "date": "2011", "authors": "Wei K, Xu Y, Tse H, Manolson M F, Gong S-G", "reference": { "type": "PubMed", "id": "21765038", "url": "https://pubmed.ncbi.nlm.nih.gov/21765038" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BLU0-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT2", "gene_name": "Flrt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P21803-1", "protein_name": "Fibroblast growth factor receptor 2", "gene_name": "Fgfr2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BLU0", "url": "https://www.uniprot.org/uniprotkb/Q8BLU0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21765038", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ 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Cell. Physiol.", "date": "2014", "authors": "Flintoff K A, Arudchelvan Y, Gong Siew-Ging", "reference": { "type": "PubMed", "id": "24585683", "url": "https://pubmed.ncbi.nlm.nih.gov/24585683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BLU0-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT2", "gene_name": "Flrt2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BLU0", "url": "https://www.uniprot.org/uniprotkb/Q8BLU0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24585683", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of Histone Variant H2A.J in Fine-Tuning Chromatin Organization for the Establishment of Ionizing Radiation-Induced Senescence.", "journal": "Cells", "date": "2023-03-16", "authors": "Abd Al-Razaq Mutaz A, Freyter Benjamin M, Isermann Anna, Tewary Gargi, Mangelinck Ad\u00e8le, Mann Carl, R\u00fcbe Claudia E", "reference": { "type": "PubMed", "id": "36980257", "url": "https://pubmed.ncbi.nlm.nih.gov/36980257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R1M2-1", "protein_name": "Histone H2A.J", "gene_name": "H2aj", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R1M2", "url": "https://www.uniprot.org/uniprotkb/Q8R1M2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.36980257", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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"Tada S, Kobayashi T, Omori A, Kusa Y, Okumura N, Kodaira H, Ishimi Y, Seki M, Enomoto T", "reference": { "type": "PubMed", "id": "11557815", "url": "https://pubmed.ncbi.nlm.nih.gov/11557815" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NVF4-1", "protein_name": "DNA helicase B", "gene_name": "Helb", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6NVF4", "url": "https://www.uniprot.org/uniprotkb/Q6NVF4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11557815", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"comment": "Loss of RPA1-binding, leading to impaired recruitment to sites of double-strand breaks; when associated with A-506 and A-510.", "evidence": [ { "database": "UniProtKB", "id": "Q8NG08", "url": "https://www.uniprot.org/uniprotkb/Q8NG08" }, { "database": "PubMed", "id": "26774285", "url": "https://pubmed.ncbi.nlm.nih.gov/26774285" }, { "database": "PubMed", "id": "22194613", "url": "https://pubmed.ncbi.nlm.nih.gov/22194613" } ], "uniprot_canonical_ac": "Q8NG08-1" }, { "start_pos": 506, "end_pos": 506, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of RPA1-binding, leading to impaired recruitment to sites of double-strand breaks; when associated with A-499 and A-510.", "evidence": [ { "database": "UniProtKB", "id": "Q8NG08", "url": "https://www.uniprot.org/uniprotkb/Q8NG08" }, { "database": "PubMed", "id": "26774285", "url": "https://pubmed.ncbi.nlm.nih.gov/26774285" }, { "database": "PubMed", "id": "22194613", "url": "https://pubmed.ncbi.nlm.nih.gov/22194613" } ], "uniprot_canonical_ac": "Q8NG08-1" }, { "start_pos": 510, "end_pos": 510, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of RPA1-binding, leading to impaired recruitment to sites of double-strand breaks; when associated with A-499 and A-506.", "evidence": [ { "database": "UniProtKB", "id": "Q8NG08", "url": "https://www.uniprot.org/uniprotkb/Q8NG08" }, { "database": "PubMed", "id": "26774285", "url": "https://pubmed.ncbi.nlm.nih.gov/26774285" }, { "database": "PubMed", "id": "22194613", "url": "https://pubmed.ncbi.nlm.nih.gov/22194613" } ], "uniprot_canonical_ac": "Q8NG08-1" }, { "start_pos": 591, "end_pos": 591, "sequence_org": "E", "sequence_mut": "Q", "comment": "No ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8NG08", "url": "https://www.uniprot.org/uniprotkb/Q8NG08" }, { "database": "PubMed", "id": "26774285", "url": "https://pubmed.ncbi.nlm.nih.gov/26774285" }, { "database": "PubMed", "id": "12181327", "url": 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Dendritic Cells Infected with Salmonella enterica Strain SL1344: Implications for a Nontyphoidal Salmonella Vaccine.", "journal": "Journal of proteome research", "date": "2017-01-06", "authors": "Karunakaran Karuna P, Yu Hong, Jiang Xiaozhou, Chan Queenie, Goldberg Michael F, Jenkins Marc K, Foster Leonard J, Brunham Robert C", "reference": { "type": "PubMed", "id": "27802388", "url": "https://pubmed.ncbi.nlm.nih.gov/27802388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NVF4-1", "protein_name": "DNA helicase B", "gene_name": "Helb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U3C9-1", "protein_name": "Genetic suppressor element 1", "gene_name": "Gse1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFU5-1", "protein_name": "Olfactory receptor", "gene_name": "Or6c33", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22315-1", "protein_name": "Ferrochelatase, mitochondrial", "gene_name": "Fech", "tax_name": "Mouse" }, { 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"uniprot_canonical_ac": "Q9CYQ7-1", "protein_name": "Nuclear prelamin A recognition factor", "gene_name": "Narf", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ESG6-1", "protein_name": "P2Y purinoceptor 14", "gene_name": "P2ry14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80ZE4-1", "protein_name": "Membrane progestin receptor alpha", "gene_name": "Paqr7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJT0-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "Rcl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C811-1", "protein_name": "Solute carrier family 35 member E2A", "gene_name": "Slc35e2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08573-1", "protein_name": "Galectin-9", "gene_name": "Lgals9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z0F5-1", "protein_name": "Cholesterol 25-hydroxylase", "gene_name": "Ch25h", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80SY4-1", "protein_name": "E3 ubiquitin-protein ligase MIB1", "gene_name": "Mib1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U1Z5-1", "protein_name": "G protein-signaling modulator 3", "gene_name": "Gpsm3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99P91-1", "protein_name": "Transmembrane glycoprotein NMB", "gene_name": "Gpnmb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P08030-1", "protein_name": "Adenine phosphoribosyltransferase", "gene_name": "Aprt", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QXW9-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "Slc7a8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C015-1", "protein_name": "Serine/threonine-protein kinase PAK 5", "gene_name": "Pak5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88188-1", "protein_name": "Lymphocyte antigen 86", "gene_name": "Ly86", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R326-1", "protein_name": "Paraspeckle component 1", "gene_name": "Pspc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QZB6-1", "protein_name": "Nuclear receptor subfamily 4 group A member 3", "gene_name": "Nr4a3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q00560-1", "protein_name": "Interleukin-6 receptor subunit beta", "gene_name": "Il6st", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P50580-1", "protein_name": "Proliferation-associated protein 2G4", "gene_name": "Pa2g4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VEB4-1", "protein_name": "Lysosomal phospholipase A and acyltransferase", "gene_name": "Pla2g15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10749-1", "protein_name": "Interleukin-1 beta", "gene_name": "Il1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35516-1", "protein_name": "Neurogenic locus notch homolog protein 2", "gene_name": "Notch2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P06800-4", "protein_name": "Receptor-type tyrosine-protein phosphatase C", "gene_name": "Ptprc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ESY9-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "Ifi30", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D0M1-1", "protein_name": "Phosphoribosyl pyrophosphate synthase-associated protein 1", "gene_name": "Prpsap1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BRG6-1", "protein_name": "Kelch-like protein 24", "gene_name": "Klhl24", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R502-1", "protein_name": "Volume-regulated anion channel subunit LRRC8C", "gene_name": "Lrrc8c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88855-1", "protein_name": "Leukotriene B4 receptor 1", "gene_name": "Ltb4r", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70138-1", "protein_name": "Neutrophil collagenase", "gene_name": "Mmp8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49446-1", "protein_name": "Receptor-type tyrosine-protein phosphatase epsilon", "gene_name": "Ptpre", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QZI9-1", "protein_name": "Serine incorporator 3", "gene_name": "Serinc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P46978-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A", "gene_name": "Stt3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61233-1", "protein_name": "Plastin-2", "gene_name": "Lcp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CFE6-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "Slc38a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1T2-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "Sae1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q0VBF8-1", "protein_name": "Protein stum homolog", "gene_name": "Stum", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CYV5-1", "protein_name": "Transmembrane protein 135", "gene_name": "Tmem135", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QUN7-1", "protein_name": "Toll-like receptor 2", "gene_name": "Tlr2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D771-1", "protein_name": "Proton-activated chloride channel", "gene_name": "Pacc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22893-1", "protein_name": "mRNA decay activator protein ZFP36", "gene_name": "Zfp36", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XG73-1", "protein_name": "Acyl-CoA-binding domain-containing protein 5", "gene_name": "Acbd5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K371-1", "protein_name": "Angiomotin-like protein 2", "gene_name": "Amotl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C2S7-1", "protein_name": "Amphoterin-induced protein 3", "gene_name": "Amigo3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80ZF8-1", "protein_name": "Adhesion G protein-coupled receptor B3", "gene_name": "Adgrb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99LR1-1", "protein_name": "Lysophosphatidylserine lipase ABHD12", "gene_name": "Abhd12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QY84-1", "protein_name": "Actin-like protein 7A", "gene_name": "Actl7a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BRK8-1", "protein_name": "5'-AMP-activated protein kinase catalytic subunit alpha-2", "gene_name": "Prkaa2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64729-1", "protein_name": "TGF-beta receptor type-1", "gene_name": "Tgfbr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10107-1", "protein_name": "Annexin A1", "gene_name": "Anxa1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P04919-1", "protein_name": "Band 3 anion transport protein", "gene_name": "Slc4a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35585-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "Ap1m1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97481-1", "protein_name": "Endothelial PAS domain-containing protein 1", "gene_name": "Epas1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SXY1-1", "protein_name": "Cytospin-B", "gene_name": "Specc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P06745-1", "protein_name": "Glucose-6-phosphate isomerase", "gene_name": "Gpi1; Gpi", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08857-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "Cd36", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22437-1", "protein_name": "Prostaglandin G/H synthase 1", "gene_name": "Ptgs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CD15-1", "protein_name": "Ribosomal oxygenase 2", "gene_name": "Riox2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09126-1", "protein_name": "Semaphorin-4D", "gene_name": "Sema4d", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U1J0-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "Slc38a5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61115-1", "protein_name": "Protein patched homolog 1", "gene_name": "Ptch1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60780-1", "protein_name": "Growth arrest-specific protein 7", "gene_name": "Gas7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q03145-1", "protein_name": "Ephrin type-A receptor 2", "gene_name": "Epha2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P8J7-1", "protein_name": "Creatine kinase S-type, mitochondrial", "gene_name": "Ckmt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P16382-1", "protein_name": "Interleukin-4 receptor subunit alpha", "gene_name": "Il4ra; Il4r", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P52480-1", "protein_name": "Pyruvate kinase PKM", "gene_name": "Pkm", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62425-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "Coxfa4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99LI8-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "Hgs", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91ZX7-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "Lrp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88322-1", "protein_name": "Nidogen-2", "gene_name": "Nid2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60795-1", "protein_name": "Nuclear factor erythroid 2-related factor 2", "gene_name": "Nfe2l2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DCN2-1", "protein_name": "NADH-cytochrome b5 reductase 3", "gene_name": "Cyb5r3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91YR9-1", "protein_name": "Prostaglandin reductase 1", "gene_name": "Ptgr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P09411-1", "protein_name": "Phosphoglycerate kinase 1", "gene_name": "Pgk1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U2C5-1", "protein_name": "E3 ubiquitin-protein ligase RNF149", "gene_name": "Rnf149", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VH0-1", "protein_name": "B-cell scaffold protein with ankyrin repeats", "gene_name": "Bank1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P27784-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P82198-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "Tgfbi", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BMT4-1", "protein_name": "Transforming growth factor beta activator LRRC33", "gene_name": "Nrros", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K015-1", "protein_name": "Centromere protein O", "gene_name": "Cenpo", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99KU6-1", "protein_name": "Bombesin receptor-activated protein C6orf89 homolog", "gene_name": "BC004004", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CQT9-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "Rab5if", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70658-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "Cxcr4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70566-1", "protein_name": "Protein diaphanous homolog 2", "gene_name": "Diaph2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SWY7-1", "protein_name": "Protein FAM83G", "gene_name": "Fam83g", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P12804-1", "protein_name": "Fibroleukin", "gene_name": "Fgl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8QZX2-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "Haus3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P32240-1", "protein_name": "Prostaglandin E2 receptor EP4 subtype", "gene_name": "Ptger4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35396-1", "protein_name": "Peroxisome proliferator-activated receptor delta", "gene_name": "Ppard", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WVC6-1", "protein_name": "Serine/threonine-protein kinase Sgk1", "gene_name": "Sgk1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P0-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "Psma4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P27005-1", "protein_name": "Protein S100-A8", "gene_name": "S100a8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QZI8-1", "protein_name": "Serine incorporator 1", "gene_name": "Serinc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R097-1", "protein_name": "Kunitz-type protease inhibitor 1", "gene_name": "Spint1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K2X8-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "Gtf2h5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VCS3-1", "protein_name": "Glycosaminoglycan xylosylkinase", "gene_name": "Fam20b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLJ0-1", "protein_name": "Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog", "gene_name": "Litaf", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R061-1", "protein_name": "Cytosolic Fe-S cluster assembly factor NUBP2", "gene_name": "Nubp2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64343-1", "protein_name": "ATP-binding cassette sub-family G member 1", "gene_name": "Abcg1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q4JK59-1", "protein_name": "Methylcytosine dioxygenase TET2", "gene_name": "Tet2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62351-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "Tfrc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQH7-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "Lrp10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R100-1", "protein_name": "Cadherin-17", "gene_name": "Cdh17", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5D8-1", "protein_name": "Chromodomain Y-like protein 2", "gene_name": "Cdyl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z127-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "Slc7a5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R1F1-1", "protein_name": "Protein Niban 2", "gene_name": "Niban2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35375-1", "protein_name": "Neuropilin-2", "gene_name": "Nrp2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35604-1", "protein_name": "NPC intracellular cholesterol transporter 1", "gene_name": "Npc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35683-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "gene_name": "Ndufa1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5NCR9-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "Nsrp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TMW6-1", "protein_name": "Cytosolic iron-sulfur assembly component 3", "gene_name": "Ciao3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SSW2-1", "protein_name": "Proteasome activator complex subunit 4", "gene_name": "Psme4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D411-1", "protein_name": "Testis-specific serine/threonine-protein kinase 4", "gene_name": "Tssk4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P20934-1", "protein_name": "Protein EVI2A", "gene_name": "Evi2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VP1-1", "protein_name": "Epsin-1", "gene_name": "Epn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P04104-1", "protein_name": "Keratin, type II cytoskeletal 1", "gene_name": "Krt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91WC9-1", "protein_name": "Diacylglycerol lipase-beta", "gene_name": "Daglb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80T79-3", "protein_name": "CUB and sushi domain-containing protein 3", "gene_name": "Csmd3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHY0-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "Cspg4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TPX4-1", "protein_name": "Exocyst complex component 5", "gene_name": "Exoc5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P01942-1", "protein_name": "Hemoglobin subunit alpha", "gene_name": "Hba", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "B2RXS4-1", "protein_name": "Plexin-B2", "gene_name": "Plxnb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P42337-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "Pik3ca", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70181-1", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 beta", "gene_name": "Pip5k1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5I012-1", "protein_name": "Solute carrier family 38 member 10", "gene_name": "Slc38a10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P6M7-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "Sepsecs", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P4T1-1", "protein_name": "Sorting nexin-19", "gene_name": "Snx19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35459-1", "protein_name": "Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial", "gene_name": "Ech1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P28563-1", "protein_name": "Dual specificity protein phosphatase 1", "gene_name": "Dusp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09047-1", "protein_name": "C3a anaphylatoxin chemotactic receptor", "gene_name": "C3ar1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CW46-1", "protein_name": "Ribonucleoprotein PTB-binding 1", "gene_name": "Gm38431; Raver1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61009-1", "protein_name": "Scavenger receptor class B member 1", "gene_name": "Scarb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BVK9-1", "protein_name": "Sp110 nuclear body protein", "gene_name": "Sp110", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64693-1", "protein_name": "POU domain class 2-associating factor 1", "gene_name": "Pou2af1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SSH7-1", "protein_name": "Zinc finger ZZ-type and EF-hand domain-containing protein 1", "gene_name": "Zzef1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08093-1", "protein_name": "Calponin-2", "gene_name": "Cnn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64310-1", "protein_name": "Surfeit locus protein 4", "gene_name": "Surf4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K1H1-1", "protein_name": "Tudor domain-containing protein 7", "gene_name": "Tdrd7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60930-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "Vdac2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UN04-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 30", "gene_name": "Usp30", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NSR3-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 2", "gene_name": "Adck2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K2X3-1", "protein_name": "CST complex subunit STN1", "gene_name": "Stn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q924X2-1", "protein_name": "Carnitine O-palmitoyltransferase 1, muscle isoform", "gene_name": "Cpt1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C0P5-1", "protein_name": "Coronin-2A", "gene_name": "Coro2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QXB9-1", "protein_name": "Developmentally-regulated GTP-binding protein 2", "gene_name": "Drg2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35584-1", "protein_name": "Hepatocyte nuclear factor 3-gamma", "gene_name": "Foxa3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JHJ3-1", "protein_name": "Glycosylated lysosomal membrane protein", "gene_name": "Glmp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2N1-1", "protein_name": "Aquaporin-3", "gene_name": "Aqp3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJ66-1", "protein_name": "Cell division cycle protein 20 homolog", "gene_name": "Cdc20", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q78PG9-1", "protein_name": "Coiled-coil domain-containing protein 25", "gene_name": "Ccdc25", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2S8-1", "protein_name": "CD177 antigen", "gene_name": "Cd177", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WVD4-1", "protein_name": "H(+)/Cl(-) exchange transporter 5", "gene_name": "Clcn5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BHG9-1", "protein_name": "CGG triplet repeat-binding protein 1", "gene_name": "Cggbp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6DIA7-1", "protein_name": "Break repair meiotic recombinase recruitment factor 1", "gene_name": "Brme1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P16858-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "Gapdh", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CXV1-1", "protein_name": "Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial", "gene_name": "Sdhd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EQ06-1", "protein_name": "Estradiol 17-beta-dehydrogenase 11", "gene_name": "Hsd17b11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z2U4-1", "protein_name": "ETS-related transcription factor Elf-4", "gene_name": "Elf4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WUZ6-1", "protein_name": "C-C motif chemokine 17", "gene_name": "Ccl17", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60963-1", "protein_name": "Platelet-activating factor acetylhydrolase", "gene_name": "Pla2g7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BZ20-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP12", "gene_name": "Parp12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CQZ0-1", "protein_name": "ORM1-like protein 2", "gene_name": "Ormdl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UIW5-1", "protein_name": "E3 ubiquitin-protein ligase RNF10", "gene_name": "Rnf10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62192-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "Psmc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UPH1-1", "protein_name": "Protein PRRC1", "gene_name": "Prrc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80ZV0-1", "protein_name": "Ribonuclease H2 subunit B", "gene_name": "Rnaseh2b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q791N7-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA12", "gene_name": "Polr1h", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P58283-1", "protein_name": "E3 ubiquitin-protein ligase RNF216", "gene_name": "Rnf216", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D706-1", "protein_name": "RNA polymerase II-associated protein 3", "gene_name": "Rpap3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PN0-1", "protein_name": "Sodium/iodide cotransporter", "gene_name": "Slc5a5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35114-1", "protein_name": "Lysosome membrane protein 2", "gene_name": "Scarb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K4D3-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "Slc36a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K4Z5-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "Sf3a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5HZG4-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "Taf3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80X71-1", "protein_name": "Transmembrane protein 106B", "gene_name": "Tmem106b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SYH2-1", "protein_name": "Vacuolar ATPase assembly protein VMA12", "gene_name": "Vma12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CR96-1", "protein_name": "Transmembrane protein 208", "gene_name": "Tmem208", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PN3-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "Trim26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DBY4-1", "protein_name": "TLR4 interactor with leucine rich repeats", "gene_name": "Tril", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C353-1", "protein_name": "Transmembrane protein 252", "gene_name": "Tmem252", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P13439-1", "protein_name": "Uridine 5'-monophosphate synthase", "gene_name": "Umps", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D306-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene_name": "Mgat4c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PDE8-1", "protein_name": "Solute carrier family 68 member 1", "gene_name": "Mfsd13a; Slc68a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K3Z9-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "Pom121", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VD58-1", "protein_name": "Protein EVI2B", "gene_name": "Evi2b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60848-1", "protein_name": "Lymphocyte-specific helicase", "gene_name": "Hells", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "J3QK46-1", "protein_name": "Transmembrane protein 200C", "gene_name": "Tmem200c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WTI7-1", "protein_name": "Unconventional myosin-Ic", "gene_name": "Myo1c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35918-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "Kdr", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91VS7-1", "protein_name": "Microsomal glutathione S-transferase 1", "gene_name": "Mgst1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P57016-1", "protein_name": "Ladinin-1", "gene_name": "Lad1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q922Q1-1", "protein_name": "Mitochondrial amidoxime reducing component 2", "gene_name": "Mtarc2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P27808-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene_name": "Mgat1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70414-1", "protein_name": "Sodium/calcium exchanger 1", "gene_name": "Slc8a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q01705-1", "protein_name": "Neurogenic locus notch homolog protein 1", "gene_name": "Notch1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35951-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "Ldlr", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60805-1", "protein_name": "Tyrosine-protein kinase Mer", "gene_name": "Mertk", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P57787-1", "protein_name": "Monocarboxylate transporter 4", "gene_name": "Slc16a3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JHJ8-1", "protein_name": "ICOS ligand", "gene_name": "Icoslg; Icosl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1X5-1", "protein_name": "ATP-binding cassette sub-family C member 5", "gene_name": "Abcc5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O55013-1", "protein_name": "Trafficking protein particle complex subunit 3", "gene_name": "Trappc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R1J9-1", "protein_name": "Torsin-2A", "gene_name": "Tor2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VE09-1", "protein_name": "Tetratricopeptide repeat protein 39C", "gene_name": "Ttc39c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "G3UZC7-1", "protein_name": "Vomeronasal 2, receptor, pseudogene 158", "gene_name": "Vmn2r-ps158", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQ94-1", "protein_name": "Paired-Ig-like receptor A2", "gene_name": "Pira2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "G5E897-1", "protein_name": "Protein O-glucosyltransferase 3", "gene_name": "Poglut3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BWQ1-1", "protein_name": "UDP-glucuronosyltransferase 2A3", "gene_name": "Ugt2a3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2A884-1", "protein_name": "Transcription factor HIVEP3", "gene_name": "Hivep3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91XB7-1", "protein_name": "Protein YIF1A", "gene_name": "Yif1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z6A3-1", "protein_name": "Isthmin 2", "gene_name": "Ism2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P28662-1", "protein_name": "Membrane protein BRI3", "gene_name": "Bri3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VBW5-1", "protein_name": "HMG box transcription factor BBX", "gene_name": "Bbx", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WVC3-1", "protein_name": "Caveolin-2", "gene_name": "Cav2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z2C4-1", "protein_name": "Phosphatidylinositol-3-phosphate phosphatase MTMR1", "gene_name": "Mtmr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2RSY1-1", "protein_name": "KAT8 regulatory NSL complex subunit 3", "gene_name": "Kansl3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05132-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "Prkaca", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z0E0-1", "protein_name": "Neurochondrin", "gene_name": "Ncdn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q497V6-1", "protein_name": "Bromo adjacent homology domain-containing 1 protein", "gene_name": "Bahd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BHC4-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "Dcakd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35290-1", "protein_name": "Eosinophil cationic-type ribonuclease 3", "gene_name": "Ear3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D902-1", "protein_name": "General transcription factor IIE subunit 2", "gene_name": "Gtf2e2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91WK2-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit H", "gene_name": "Eif3h", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QX66-1", "protein_name": "Zinc finger protein neuro-d4", "gene_name": "Dpf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TA9-1", "protein_name": "Ectopic P granules protein 5 homolog", "gene_name": "Epg5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P17809-1", "protein_name": "Solute carrier family 2, facilitated glucose transporter member 1", "gene_name": "Slc2a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91YI6-1", "protein_name": "Poly(A) RNA polymerase GLD2", "gene_name": "Tent2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D6K8-1", "protein_name": "FUN14 domain-containing protein 2", "gene_name": "Fundc2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K1B9-1", "protein_name": "Polypeptide N-acetylgalactosaminyltransferase 18", "gene_name": "Galnt18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAM5-1", "protein_name": "3'-5' exoribonuclease HELZ2", "gene_name": "Helz2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P29416-1", "protein_name": "Beta-hexosaminidase subunit alpha", "gene_name": "Hexa", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P43432-1", "protein_name": "Interleukin-12 subunit beta", "gene_name": "Il12b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q05769-1", "protein_name": "Prostaglandin G/H synthase 2", "gene_name": "Ptgs2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JHU9-1", "protein_name": "Inositol-3-phosphate synthase 1", "gene_name": "Isyna1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHP7-1", "protein_name": "Leukocyte elastase inhibitor B", "gene_name": "Serpinb1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D103-1", "protein_name": "Interferon-induced transmembrane protein 1", "gene_name": "Ifitm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09159-1", "protein_name": "Lysosomal alpha-mannosidase", "gene_name": "Man2b1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q06219-1", "protein_name": "Nuclear receptor subfamily 4 group A member 2", "gene_name": "Nr4a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NXY1-1", "protein_name": "TBC1 domain family member 31", "gene_name": "Tbc1d31", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C2L6-1", "protein_name": "Transmembrane protein 161B", "gene_name": "Tmem161b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0M1-1", "protein_name": "Trafficking protein particle complex subunit 9", "gene_name": "Trappc9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VC04-1", "protein_name": "Transmembrane protein 106A", "gene_name": "Tmem106a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ESP1-1", "protein_name": "Stromal cell-derived factor 2-like protein 1", "gene_name": "Sdf2l1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BTG3-1", "protein_name": "T-complex protein 11-like protein 1", "gene_name": "Tcp11l1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R3F9-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "Tut1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERC3-1", "protein_name": "SERTA domain-containing protein 3", "gene_name": "Sertad3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WVA4-1", "protein_name": "Transgelin-2", "gene_name": "Tagln2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88968-1", "protein_name": "Transcobalamin-2", "gene_name": "Tcn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5ND34-1", "protein_name": "WD repeat-containing protein 81", "gene_name": "Wdr81", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EP97-1", "protein_name": "Sentrin-specific protease 3", "gene_name": "Senp3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q616-1", "protein_name": "AHNAK nucleoprotein", "gene_name": "Ahnak", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BWT5-1", "protein_name": "Disco-interacting protein 2 homolog A", "gene_name": "Dip2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P09803-1", "protein_name": "Cadherin-1", "gene_name": "Cdh1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VDD5-1", "protein_name": "Myosin-9", "gene_name": "Myh9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q09014-1", "protein_name": "Neutrophil cytosol factor 1", "gene_name": "Ncf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UVL4-1", "protein_name": "Vacuolar protein sorting-associated protein 51 homolog", "gene_name": "Vps51", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91XQ0-1", "protein_name": "Dynein axonemal heavy chain 8", "gene_name": "Dnah8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P29477-1", "protein_name": "Nitric oxide synthase, inducible", "gene_name": "Nos2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99KK2-1", "protein_name": "N-acylneuraminate cytidylyltransferase", "gene_name": "Cmas", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z2R9-1", "protein_name": "Eukaryotic translation initiation factor 2-alpha kinase 1", "gene_name": "Eif2ak1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6NVF4", "url": "https://www.uniprot.org/uniprotkb/Q6NVF4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.27802388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 277 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Further characterization of DNA helicase activity of mouse DNA-dependent adenosinetriphosphatase B (DNA helicase B).", "journal": "Biochemistry", "date": "1988-03-08", "authors": "Seki M, Enomoto T, Yanagisawa J, Hanaoka F, Ui M", "reference": { "type": "PubMed", "id": "2966639", "url": "https://pubmed.ncbi.nlm.nih.gov/2966639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NVF4-1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA-dependent adenosinetriphosphatase B from mouse FM3A cells has DNA helicase activity.", "journal": "Biochemistry", "date": "1987-05-19", "authors": "Seki M, Enomoto T, Hanaoka F, Yamada M", "reference": { "type": "PubMed", "id": "3038170", "url": "https://pubmed.ncbi.nlm.nih.gov/3038170" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NVF4-1", "protein_name": "DNA helicase B", "gene_name": "Helb", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6NVF4", "url": "https://www.uniprot.org/uniprotkb/Q6NVF4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.3038170", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Methylation at arginine 17 of histone H3 is linked to gene activation.", "journal": "EMBO reports", "date": "2002", "authors": "Bauer UM, Daujat S, Nielsen SJ, Nightingale K, Kouzarides T", "reference": { "type": "PubMed", "id": "11751582", "url": "https://pubmed.ncbi.nlm.nih.gov/11751582" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60678-1", "protein_name": "Protein arginine N-methyltransferase 3", "gene_name": "PRMT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQ92-1", "protein_name": "Coordinator of PRMT5 and differentiation stimulator", "gene_name": "COPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQA1-1", "protein_name": "Methylosome protein WDR77", "gene_name": "WDR77", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LA8-1", "protein_name": "Protein arginine N-methyltransferase 6", "gene_name": "PRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVM4-1", "protein_name": "Protein 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protein 2", "gene_name": "ARID2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GM5-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1", "gene_name": "SMARCD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14744-1", "protein_name": "Protein arginine N-methyltransferase 5", "gene_name": "PRMT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61964-1", "protein_name": "WD repeat-containing protein 5", "gene_name": "WDR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94805-1", "protein_name": "Actin-like protein 6B", "gene_name": "ACTL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969G3-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1", "gene_name": "SMARCE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q92922-1", "protein_name": "SWI/SNF complex subunit SMARCC1", "gene_name": "SMARCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WVG6-1", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "Carm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P11802-1", "protein_name": "Cyclin-dependent kinase 4", "gene_name": "CDK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAQ2-1", "protein_name": "SWI/SNF complex subunit SMARCC2", "gene_name": "SMARCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O96019-1", "protein_name": "Actin-like protein 6A", "gene_name": "ACTL6A", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11751582", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 52 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of methylation and acetylation sites on mouse histone H3 using matrix-assisted laser desorption/ionization time-of-flight and nanoelectrospray ionization tandem mass spectrometry.", "journal": "Journal of protein chemistry", "date": "2003", "authors": "Cocklin RR, Wang M", "reference": { "type": "PubMed", "id": "13678296", "url": "https://pubmed.ncbi.nlm.nih.gov/13678296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; 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}, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Histone deimination antagonizes arginine methylation.", "journal": "Cell", "date": "2004", "authors": "Cuthbert GL, Daujat S, Snowden AW, Erdjument-Bromage H, Hagiwara T, Yamada M, Schneider R, Gregory PD, Tempst P, Bannister AJ, Kouzarides T", "reference": { "type": "PubMed", "id": "15339660", "url": "https://pubmed.ncbi.nlm.nih.gov/15339660" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z183-1", "protein_name": "Protein-arginine deiminase type-4", "gene_name": "Padi4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P51532-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4", "gene_name": "SMARCA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6TGC4-1", "protein_name": "Inactive protein-arginine deiminase type-6", "gene_name": "PADI6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2J8-1", "protein_name": "Protein-arginine deiminase type-2", "gene_name": "PADI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSI6-1", "protein_name": "Bromodomain and WD repeat-containing protein 1", "gene_name": "BRWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM07-1", "protein_name": "Protein-arginine deiminase type-4", "gene_name": "PADI4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULC6-1", "protein_name": "Protein-arginine deiminase type-1", "gene_name": "PADI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULW8-1", "protein_name": "Protein-arginine deiminase type-3", "gene_name": "PADI3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WVG6-1", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "Carm1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15339660", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human SWI/SNF-associated PRMT5 methylates histone H3 arginine 8 and negatively regulates expression of ST7 and NM23 tumor suppressor genes.", "journal": "Molecular and cellular biology", "date": "2004", "authors": "Pal S, Vishwanath SN, Erdjument-Bromage H, Tempst P, Sif S", "reference": { "type": "PubMed", "id": "15485929", "url": "https://pubmed.ncbi.nlm.nih.gov/15485929" }, 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of chromatin subfamily A member 2", "gene_name": "SMARCA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51532-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4", "gene_name": "SMARCA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14497-1", "protein_name": "AT-rich interactive domain-containing protein 1A", "gene_name": "ARID1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K1-1", "protein_name": "DNA (cytosine-5)-methyltransferase 3A", "gene_name": "DNMT3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12824-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1", "gene_name": "SMARCB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFD5-5", "protein_name": "AT-rich interactive domain-containing protein 1B", "gene_name": "ARID1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U86-1", "protein_name": "Protein polybromo-1", "gene_name": "PBRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8CIG8-1", "protein_name": "Protein arginine N-methyltransferase 5", "gene_name": "Prmt5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q16576-1", "protein_name": "Histone-binding protein RBBP7", "gene_name": "RBBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99M96-1", "protein_name": "Suppressor of tumorigenicity 7 protein", "gene_name": "St7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q92925-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2", "gene_name": "SMARCD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6STE5-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3", "gene_name": "SMARCD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CP9-1", "protein_name": "AT-rich interactive domain-containing protein 2", "gene_name": "ARID2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GM5-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1", "gene_name": "SMARCD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14744-1", "protein_name": "Protein arginine N-methyltransferase 5", "gene_name": "PRMT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61964-1", "protein_name": "WD repeat-containing protein 5", "gene_name": "WDR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94805-1", "protein_name": "Actin-like protein 6B", "gene_name": "ACTL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969G3-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1", "gene_name": "SMARCE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The RING domain of RAG1 ubiquitylates histone H3: a novel activity in chromatin-mediated regulation of V(D)J joining.", "journal": "Molecular cell", "date": "2010", "authors": "Grazini U, Zanardi F, Citterio E, Casola S, Goding CR, McBlane F", "reference": { "type": "PubMed", "id": "20122409", "url": "https://pubmed.ncbi.nlm.nih.gov/20122409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15919-1", "protein_name": "V(D)J recombination-activating protein 1", "gene_name": "Rag1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 307, "end_pos": 307, "sequence_org": "H", "sequence_mut": "A", "comment": "Displays lower E3 ligase activity and affects the joining step of V(D)J recombination.", "evidence": [ { "database": "UniProtKB", "id": "P15919", "url": "https://www.uniprot.org/uniprotkb/P15919" }, { "database": "PubMed", "id": "20122409", "url": "https://pubmed.ncbi.nlm.nih.gov/20122409" } ], "uniprot_canonical_ac": "P15919-1" }, { "start_pos": 325, "end_pos": 325, "sequence_org": "C", "sequence_mut": "G", "comment": "Loss of E3 ligase activity and affects the joining step of V(D)J recombination.", "evidence": [ { "database": "UniProtKB", "id": "P15919", "url": "https://www.uniprot.org/uniprotkb/P15919" }, { "database": "PubMed", "id": "20122409", "url": "https://pubmed.ncbi.nlm.nih.gov/20122409" }, { "database": "PubMed", "id": "14671314", "url": "https://pubmed.ncbi.nlm.nih.gov/14671314" } ], "uniprot_canonical_ac": "P15919-1" } ], "record_id": "pubmed.20122409", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.", "journal": "Cell", "date": "2011", "authors": "Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, Khochbin S, Ren B, Zhao Y", "reference": { "type": "PubMed", "id": "21925322", "url": "https://pubmed.ncbi.nlm.nih.gov/21925322" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP1-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2bc12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE2-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2ac6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10854-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2bc14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64478-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2bc9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP2-1", "protein_name": "Histone H2B type 1-P", "gene_name": "Hist1h2bp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10853-1", "protein_name": "Histone H2B type 1-F/J/L", "gene_name": "H2bc11; H2bc13; H2bc15; H2bc7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64525-1", "protein_name": "Histone H2B type 2-B", "gene_name": "H2bc18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15864-1", "protein_name": "Histone H1.2", "gene_name": "H1-2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64475-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2bc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64524-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2bc21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16403-1", "protein_name": "Histone H1.2", "gene_name": "H1-2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE1-1", "protein_name": "Histone H2A type 1-B", "gene_name": "H2ac4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE3-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2ac7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70696-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4; H2bc6; H2bc8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE4-1", "protein_name": "Histone H2A type 1-E", "gene_name": "H2ac8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE6-1", "protein_name": "Histone H2A type 1-I", "gene_name": "H2ac13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE9-1", "protein_name": "Histone H2A type 1-P", "gene_name": "Hist1h2ap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64523-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2ac20", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BFU2-1", "protein_name": "Histone H2A type 3", "gene_name": "H2ac25", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP0-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2bc26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP7-1", "protein_name": "Histone H2A type 1-K", "gene_name": "H2ac15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE5-1", "protein_name": "Histone H2A type 1-G", "gene_name": "H2ac11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE7-1", "protein_name": "Histone H2A type 1-N", "gene_name": "Hist1h2an", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE8-1", "protein_name": "Histone H2A type 1-O", "gene_name": "Hist1h2ao", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GSS7-1", "protein_name": "Histone H2A type 2-A", "gene_name": "Hist2h2aa1; Hist2h2aa2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP5-1", "protein_name": "Histone H2A type 1-F", "gene_name": "Hist1h2af", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP6-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2ac12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2U9-1", "protein_name": "H2B.U histone 2", "gene_name": "H2bu2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21925322", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 65 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lysine succinylation and lysine malonylation in histones.", "journal": "Molecular & cellular proteomics : MCP", "date": "2012", "authors": "Xie Z, Dai J, Dai L, Tan M, Cheng Z, Wu Y, Boeke JD, Zhao Y", "reference": { "type": "PubMed", "id": "22389435", "url": "https://pubmed.ncbi.nlm.nih.gov/22389435" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP1-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2bc12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10854-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2bc14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64478-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2bc9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84051-1", "protein_name": "Histone H2A", "gene_name": "His2A:CG31618; His2A:CG33808; His2A:CG33814; His2A:CG33817; His2A:CG33820; His2A:CG33823; His2A:CG33826; His2A:CG33829; His2A:CG33832; His2A:CG33835; His2A:CG33838; His2A:CG33841; His2A:CG33844; His2A:CG33847; His2A:CG33850; His2A:CG33862; His2A:CG33865; His2A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "C0HL66-1", "protein_name": "Histone H3.3A", "gene_name": "His3.3A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "C0HL67-1", "protein_name": "Histone H3.3B", "gene_name": "His3.3B", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8CGP2-1", "protein_name": "Histone H2B type 1-P", "gene_name": "Hist1h2bp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10853-1", "protein_name": "Histone H2B type 1-F/J/L", "gene_name": "H2bc11; H2bc13; H2bc15; H2bc7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64525-1", "protein_name": "Histone H2B type 2-B", "gene_name": "H2bc18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02299-1", "protein_name": "Histone H3", "gene_name": "His3:CG31613; His3:CG33803; His3:CG33806; His3:CG33809; His3:CG33812; His3:CG33815; His3:CG33818; His3:CG33821; His3:CG33824; His3:CG33827; His3:CG33830; His3:CG33833; His3:CG33836; His3:CG33839; His3:CG33842; His3:CG33845; His3:CG33848; His3:CG33851; His3:CG33854; His3:CG33857; His3:CG33860; His3:CG33863; His3:CG33866; His3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P84040-1", "protein_name": "Histone H4", "gene_name": "His4:CG31611; His4:CG33869; His4:CG33871; His4:CG33873; His4:CG33875; His4:CG33877; His4:CG33879; His4:CG33881; His4:CG33883; His4:CG33885; His4:CG33887; His4:CG33889; His4:CG33891; His4:CG33893; His4:CG33895; His4:CG33897; His4:CG33899; His4:CG33901; His4:CG33903; His4:CG33905; His4:CG33907; His4:CG33909; His4r; His4", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P02283-1", "protein_name": "Histone H2B", "gene_name": "His2B:CG17949; His2B:CG33868; His2B:CG33870; His2B:CG33872; His2B:CG33874; His2B:CG33876; His2B:CG33878; His2B:CG33880; His2B:CG33882; His2B:CG33884; His2B:CG33886; His2B:CG33888; His2B:CG33890; His2B:CG33892; His2B:CG33894; His2B:CG33896; His2B:CG33898; His2B:CG33900; His2B:CG33902; His2B:CG33904; His2B:CG33906; His2B:CG33908; His2B:CG33910; His2B", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q64475-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2bc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64524-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2bc21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4; H2bc6; H2bc8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02293-1", "protein_name": "Histone H2B.1", "gene_name": "HTB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02294-1", "protein_name": "Histone H2B.2", "gene_name": "HTB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02309-1", "protein_name": "Histone H4", "gene_name": "HHF1; HHF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04911-1", "protein_name": "Histone H2A.1", "gene_name": "HTA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04912-1", "protein_name": "Histone H2A.2", "gene_name": "HTA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P61830-1", "protein_name": "Histone H3", "gene_name": "HHT1; HHT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8CGP0-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2bc26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2U9-1", "protein_name": "H2B.U histone 2", "gene_name": "H2bu2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22389435", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 58 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lysine 2-hydroxyisobutyrylation is a widely distributed active histone mark.", "journal": "Nature chemical biology", "date": "2014", "authors": "Dai L, Peng C, Montellier E, Lu Z, Chen Y, Ishii H, Debernardi A, Buchou T, Rousseaux S, Jin F, Sabari BR, Deng Z, Allis CD, Ren B, Khochbin S, 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"gene_name": "Hist1h2bp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10853-1", "protein_name": "Histone H2B type 1-F/J/L", "gene_name": "H2bc11; H2bc13; H2bc15; H2bc7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64525-1", "protein_name": "Histone H2B type 2-B", "gene_name": "H2bc18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15864-1", "protein_name": "Histone H1.2", "gene_name": "H1-2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64475-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2bc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64524-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2bc21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16403-1", "protein_name": "Histone H1.2", "gene_name": "H1-2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE1-1", "protein_name": "Histone H2A type 1-B", "gene_name": "H2ac4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE3-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2ac7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4; H2bc6; H2bc8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE4-1", "protein_name": "Histone H2A type 1-E", "gene_name": "H2ac8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE6-1", "protein_name": "Histone H2A type 1-I", "gene_name": "H2ac13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE9-1", "protein_name": "Histone H2A type 1-P", "gene_name": "Hist1h2ap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64523-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2ac20", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BFU2-1", "protein_name": "Histone H2A type 3", "gene_name": "H2ac25", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP0-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2bc26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP7-1", "protein_name": "Histone H2A type 1-K", "gene_name": "H2ac15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE5-1", "protein_name": "Histone H2A type 1-G", "gene_name": "H2ac11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE7-1", "protein_name": "Histone H2A type 1-N", "gene_name": "Hist1h2an", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE8-1", "protein_name": "Histone H2A type 1-O", "gene_name": "Hist1h2ao", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GSS7-1", "protein_name": "Histone H2A type 2-A", "gene_name": "Hist2h2aa1; Hist2h2aa2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP5-1", "protein_name": "Histone H2A type 1-F", "gene_name": "Hist1h2af", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP6-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2ac12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2U9-1", "protein_name": "H2B.U histone 2", "gene_name": "H2bu2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24681537", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of a mouse replacement histone H3.3 gene with a highly conserved 3' noncoding region during SV40- and polyoma-induced Go to S-phase transition.", "journal": "Nucleic Acids Res.", "date": "1989", "authors": "Hraba-Renevey S, Kress M", "reference": { "type": "PubMed", "id": "2470025", "url": "https://pubmed.ncbi.nlm.nih.gov/2470025" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2470025", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters.", "journal": "Molecular cell", "date": "2016", "authors": "Goudarzi A, Zhang D, Huang H, Barral S, Kwon OK, Qi S, Tang Z, Buchou T, Vitte AL, He T, Cheng Z, Montellier E, Gaucher J, Curtet S, Debernardi A, Charbonnier G, Puthier D, Petosa C, Panne D, Rousseaux S, Roeder RG, Zhao Y, Khochbin S", "reference": { "type": "PubMed", "id": "27105113", "url": "https://pubmed.ncbi.nlm.nih.gov/27105113" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "B2RWS6-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "Ep300", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91Y44-1", "protein_name": "Bromodomain testis-specific protein", "gene_name": "Brdt", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02309-1", "protein_name": "Histone H4", "gene_name": "HHF1; HHF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P61830-1", "protein_name": "Histone H3", "gene_name": "HHT1; HHT2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.27105113", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 28 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metabolic Regulation of Gene Expression by Histone Lysine beta-Hydroxybutyrylation.", "journal": "Molecular cell", "date": "2016", "authors": "Xie Z, Zhang D, Chung D, Tang Z, Huang H, Dai L, Qi S, Li J, Colak G, Chen Y, Xia C, Peng C, Ruan H, Kirkey M, Wang D, Jensen LM, Kwon OK, Lee S, Pletcher SD, Tan M, Lombard DB, White KP, Zhao H, Li J, Roeder RG, Yang X, Zhao Y", "reference": { "type": "PubMed", "id": "27105115", "url": "https://pubmed.ncbi.nlm.nih.gov/27105115" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP1-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2bc12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE2-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2ac6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10854-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2bc14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64478-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2bc9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P43277-1", "protein_name": "Histone H1.3", "gene_name": "H1-3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64522-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2ac21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP2-1", "protein_name": "Histone H2B type 1-P", "gene_name": "Hist1h2bp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10853-1", "protein_name": "Histone H2B type 1-F/J/L", "gene_name": "H2bc11; H2bc13; H2bc15; H2bc7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64525-1", "protein_name": "Histone H2B type 2-B", "gene_name": "H2bc18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q64475-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2bc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64524-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2bc21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE1-1", "protein_name": "Histone H2A type 1-B", "gene_name": "H2ac4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE3-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2ac7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4; H2bc6; H2bc8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16402-1", "protein_name": "Histone H1.3", "gene_name": "H1-3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE4-1", "protein_name": "Histone H2A type 1-E", "gene_name": "H2ac8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE6-1", "protein_name": "Histone H2A type 1-I", "gene_name": "H2ac13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE9-1", "protein_name": "Histone H2A type 1-P", "gene_name": "Hist1h2ap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64523-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2ac20", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BFU2-1", "protein_name": "Histone H2A type 3", "gene_name": "H2ac25", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP0-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2bc26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP7-1", "protein_name": "Histone H2A type 1-K", "gene_name": "H2ac15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE5-1", "protein_name": "Histone H2A type 1-G", "gene_name": "H2ac11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE7-1", "protein_name": "Histone H2A type 1-N", "gene_name": "Hist1h2an", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE8-1", "protein_name": "Histone H2A type 1-O", "gene_name": "Hist1h2ao", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GSS7-1", "protein_name": "Histone H2A type 2-A", "gene_name": "Hist2h2aa1; Hist2h2aa2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP5-1", "protein_name": "Histone H2A type 1-F", "gene_name": "Hist1h2af", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP6-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2ac12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2U9-1", "protein_name": "H2B.U histone 2", "gene_name": "H2bu2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.27105115", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lysine benzoylation is a histone mark regulated by SIRT2.", "journal": "Nature communications", "date": "2018", "authors": "Huang H, Zhang D, Wang Y, Perez-Neut M, Han Z, Zheng YG, Hao Q, Zhao Y", "reference": { "type": "PubMed", "id": "30154464", "url": "https://pubmed.ncbi.nlm.nih.gov/30154464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP1-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2bc12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE2-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2ac6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10854-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2bc14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64478-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2bc9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64522-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2ac21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP2-1", "protein_name": "Histone H2B type 1-P", "gene_name": "Hist1h2bp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10853-1", "protein_name": "Histone H2B type 1-F/J/L", "gene_name": "H2bc11; H2bc13; H2bc15; H2bc7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64525-1", "protein_name": "Histone H2B type 2-B", "gene_name": "H2bc18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10412-1", "protein_name": "Histone H1.4", "gene_name": "H1-4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q64475-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2bc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64524-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2bc21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VDQ8-1", "protein_name": "NAD-dependent protein deacetylase sirtuin-2", "gene_name": "Sirt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16403-1", "protein_name": "Histone H1.2", "gene_name": "H1-2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16401-1", "protein_name": "Histone H1.5", "gene_name": "H1-5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02539-1", "protein_name": "Histone H1.1", "gene_name": "H1-1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE1-1", "protein_name": "Histone H2A type 1-B", "gene_name": "H2ac4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE3-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2ac7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70696-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4; H2bc6; H2bc8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXJ6-1", "protein_name": "NAD-dependent protein deacetylase sirtuin-2", "gene_name": "SIRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16402-1", "protein_name": "Histone H1.3", "gene_name": "H1-3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE4-1", "protein_name": "Histone H2A type 1-E", "gene_name": "H2ac8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE6-1", "protein_name": "Histone H2A type 1-I", "gene_name": "H2ac13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE9-1", "protein_name": "Histone H2A type 1-P", "gene_name": "Hist1h2ap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64523-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2ac20", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BFU2-1", "protein_name": "Histone H2A type 3", "gene_name": "H2ac25", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP0-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2bc26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP7-1", "protein_name": "Histone H2A type 1-K", "gene_name": "H2ac15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE5-1", "protein_name": "Histone H2A type 1-G", "gene_name": "H2ac11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE7-1", "protein_name": "Histone H2A type 1-N", "gene_name": "Hist1h2an", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE8-1", "protein_name": "Histone H2A type 1-O", "gene_name": "Hist1h2ao", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GSS7-1", "protein_name": "Histone H2A type 2-A", "gene_name": "Hist2h2aa1; Hist2h2aa2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP5-1", "protein_name": "Histone H2A type 1-F", "gene_name": "Hist1h2af", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP6-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2ac12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2U9-1", "protein_name": "H2B.U histone 2", "gene_name": "H2bu2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30154464", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 70 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Histone deacetylase (HDAC) 1 and 2 complexes regulate both histone acetylation and crotonylation in vivo.", "journal": "Scientific reports", "date": "2018", "authors": "Kelly RDW, Chandru A, Watson PJ, Song Y, Blades M, Robertson NS, Jamieson AG, Schwabe JWR, Cowley SM", "reference": { "type": "PubMed", "id": "30279482", "url": "https://pubmed.ncbi.nlm.nih.gov/30279482" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P84244-1", "protein_name": "Histone H3.3", "gene_name": "H3-3a; H3-3b; H3f3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09106-1", "protein_name": "Histone deacetylase 1", "gene_name": "Hdac1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88895-1", "protein_name": "Histone deacetylase 3", "gene_name": "Hdac3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70288-1", "protein_name": "Histone deacetylase 2", "gene_name": "Hdac2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30279482", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3.", "journal": "Nature", "date": "2019", "authors": "Farrelly LA, Thompson RE, Zhao S, Lepack AE, Lyu Y, Bhanu NV, Zhang B, Loh YE, Ramakrishnan A, Vadodaria KC, Heard KJ, Erikson G, Nakadai T, Bastle RM, Lukasak BJ, Zebroski H 3rd, Alenina N, Bader M, Berton O, Roeder RG, Molina H, Gage FH, Shen L, Garcia BA, Li H, Muir TW, Maze I", 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"uniprot_canonical_ac": "P21980-1", "protein_name": "Protein-glutamine gamma-glutamyltransferase 2", "gene_name": "TGM2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P84244", "url": "https://www.uniprot.org/uniprotkb/P84244" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 6, "end_pos": 6, "sequence_org": "Q", "sequence_mut": "A", "comment": "Abolished serotonylation by TGM2. 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Exp. Med.", "date": "2003", "authors": "Susa Shinji, Daimon Makoto, Ono Hideyu, Li Song, Yoshida Tadashi, Kato Takeo", "reference": { "type": "PubMed", "id": "12862310", "url": "https://pubmed.ncbi.nlm.nih.gov/12862310" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36552-1", "protein_name": "Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial", "gene_name": "Cpox", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P36551-1", "protein_name": "Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial", "gene_name": "CPOX", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P36552", "url": "https://www.uniprot.org/uniprotkb/P36552" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12862310", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Examination of mitochondrial protein targeting of haem synthetic enzymes: in vivo identification of three functional haem-responsive motifs in 5-aminolaevulinate synthase.", "journal": "Biochem. J.", "date": "2005", "authors": "Dailey Tamara A, Woodruff John H, Dailey Harry A", "reference": { "type": "PubMed", "id": "15482256", "url": "https://pubmed.ncbi.nlm.nih.gov/15482256" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36552-1", "protein_name": "Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial", "gene_name": "Cpox", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P36552", "url": "https://www.uniprot.org/uniprotkb/P36552" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15482256", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CBS homogenization mutation strategy narrows the glycan binding profile of a GlcNAc-specific lectin AANL.", "journal": "Glycobiology", "date": "2020", "authors": "Su Y, Ye X, Xu B, Li Y, Yang Q, Yu W, Song J, Guo C, Wang X, Hart GW, Sun H", "reference": { "type": "PubMed", "id": "31616917", "url": "https://pubmed.ncbi.nlm.nih.gov/31616917" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P36552-1", "protein_name": "Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hepatoma-derived growth factor belongs to a gene family in mice showing significant homology in the amino terminus.", "journal": "Biochem. Biophys. Res. Commun.", "date": "1997", "authors": "Izumoto Y, Kuroda T, Harada H, Kishimoto T, Nakamura H", "reference": { "type": "PubMed", "id": "9299445", "url": "https://pubmed.ncbi.nlm.nih.gov/9299445" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3UMU9-1", "protein_name": "Hepatoma-derived growth factor-related protein 2", "gene_name": "Hdgfl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P51859-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "Hdgf", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3UMU9", "url": "https://www.uniprot.org/uniprotkb/Q3UMU9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9299445", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human and mouse replication-dependent histone genes.", "journal": "Genomics", "date": "2002", "authors": "Marzluff WF, Gongidi P, Woods KR, Jin J, Maltais LJ", "reference": { "type": "PubMed", "id": "12408966", "url": "https://pubmed.ncbi.nlm.nih.gov/12408966" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CGP1-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2bc12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE2-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2ac6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10854-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2bc14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64478-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2bc9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P43277-1", "protein_name": "Histone H1.3", "gene_name": "H1-3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P43275-1", "protein_name": "Histone H1.1", "gene_name": "H1-1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP2-1", "protein_name": "Histone H2B type 1-P", "gene_name": "Hist1h2bp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10853-1", "protein_name": "Histone H2B type 1-F/J/L", "gene_name": "H2bc11; 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H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07133-1", "protein_name": "Histone H1t", "gene_name": "H1-6; H1f6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15864-1", "protein_name": "Histone H1.2", "gene_name": "H1-2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64475-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2bc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P43276-1", "protein_name": "Histone H1.5", "gene_name": "H1-5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62806-1", "protein_name": "Histone H4", "gene_name": "H4c11; H4c12; H4c14; H4c16; H4c1; H4c2; H4c3; H4c4; H4c6; H4c8; H4c9; Hist1h4m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64524-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2bc21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16403-1", "protein_name": "Histone H1.2", "gene_name": "H1-2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22492-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16401-1", "protein_name": "Histone H1.5", "gene_name": "H1-5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02539-1", "protein_name": "Histone H1.1", "gene_name": "H1-1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE1-1", "protein_name": "Histone H2A type 1-B", "gene_name": "H2ac4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE3-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2ac7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70696-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4; H2bc6; H2bc8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16402-1", "protein_name": "Histone H1.3", "gene_name": "H1-3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HKE4-1", "protein_name": "Histone H2A type 1-E", "gene_name": "H2ac8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE6-1", "protein_name": "Histone H2A type 1-I", "gene_name": "H2ac13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64523-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2ac20", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BFU2-1", "protein_name": "Histone H2A type 3", "gene_name": "H2ac25", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP0-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2bc26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP7-1", "protein_name": "Histone H2A type 1-K", "gene_name": "H2ac15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE5-1", "protein_name": "Histone H2A type 1-G", "gene_name": "H2ac11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE7-1", "protein_name": "Histone H2A type 1-N", "gene_name": "Hist1h2an", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKE8-1", "protein_name": "Histone H2A type 1-O", "gene_name": "Hist1h2ao", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GSS7-1", "protein_name": "Histone H2A type 2-A", "gene_name": "Hist2h2aa1; Hist2h2aa2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP5-1", "protein_name": "Histone H2A type 1-F", "gene_name": "Hist1h2af", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP6-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2ac12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2U9-1", "protein_name": "H2B.U histone 2", "gene_name": "H2bu2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CGP1", "url": "https://www.uniprot.org/uniprotkb/Q8CGP1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12408966", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of histone H2B at DNA double-strand breaks.", "journal": "The Journal of experimental medicine", "date": "2004", "authors": "Fernandez-Capetillo O, Allis CD, Nussenzweig A", "reference": { "type": "PubMed", "id": "15197225", "url": "https://pubmed.ncbi.nlm.nih.gov/15197225" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CGP1-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2bc12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10854-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2bc14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64478-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2bc9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP2-1", "protein_name": "Histone H2B type 1-P", "gene_name": "Hist1h2bp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10853-1", "protein_name": "Histone H2B type 1-F/J/L", "gene_name": "H2bc11; H2bc13; H2bc15; H2bc7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64525-1", "protein_name": "Histone H2B type 2-B", "gene_name": "H2bc18", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64475-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2bc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64524-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2bc21", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4; H2bc6; H2bc8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGP0-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2bc26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2U9-1", "protein_name": "H2B.U histone 2", "gene_name": "H2bu2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CGP1", "url": "https://www.uniprot.org/uniprotkb/Q8CGP1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 15, "end_pos": 15, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; 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by STK4/MST1", "evidence": [ { "database": "UniProtKB", "id": "Q64478", "url": "https://www.uniprot.org/uniprotkb/Q64478" }, { "database": "iPTMnet", "id": "Q64478", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64478" }, { "database": "PubMed", "id": "15197225", "url": "https://pubmed.ncbi.nlm.nih.gov/15197225" }, { "database": "PubMed", "id": "16039583", "url": "https://pubmed.ncbi.nlm.nih.gov/16039583" } ], "site_lbl": "Ser15", "uniprot_canonical_ac": "Q64478-1" }, { "start_pos": 15, "end_pos": 15, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by STK4/MST1", "evidence": [ { "database": "UniProtKB", "id": "Q8CGP2", "url": "https://www.uniprot.org/uniprotkb/Q8CGP2" }, { "database": "iPTMnet", "id": "Q8CGP2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8CGP2" }, { "database": "PubMed", "id": "15197225", "url": "https://pubmed.ncbi.nlm.nih.gov/15197225" }, { "database": "PubMed", "id": "16039583", "url": "https://pubmed.ncbi.nlm.nih.gov/16039583" } ], "site_lbl": "Ser15", "uniprot_canonical_ac": "Q8CGP2-1" }, { "start_pos": 15, "end_pos": 15, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; 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