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"Targeting lysine-specific demethylase 1A inhibits renal epithelial-mesenchymal transition and attenuates renal fibrosis.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "2022", "authors": "Zhang X, Li LX, Yu C, Nath KA, Zhuang S, Li X", "reference": { "type": "PubMed", "id": "34958158", "url": "https://pubmed.ncbi.nlm.nih.gov/34958158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8I6G2K8-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "Kdm1a", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0A8I6G2K8", "url": "https://www.uniprot.org/uniprotkb/A0A8I6G2K8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.34958158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"Conserved role for PCBP1 in altered RNA splicing in the hippocampus after chronic alcohol exposure.", "journal": "Molecular psychiatry", "date": "2023-10", "authors": "Carvalho Luana, Chen Hu, Maienschein-Cline Mark, Glover Elizabeth J, Pandey Subhash C, Lasek Amy W", "reference": { "type": "PubMed", "id": "37537282", "url": "https://pubmed.ncbi.nlm.nih.gov/37537282" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8I6AH91-1", "protein_name": "Poly(rC) binding protein 1", "gene_name": "Pcbp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0A8I6AH91", "url": "https://www.uniprot.org/uniprotkb/A0A8I6AH91" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.37537282", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Ami, Tobola Zuzanna, Stringer Michael, Jansen Maurits A, Vallatos Antoine, Giarratano Ylenia, Bernabeu Miguel O, Wardlaw Joanna M, Williams Anna", "reference": { "type": "PubMed", "id": "35635573", "url": "https://pubmed.ncbi.nlm.nih.gov/35635573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0ABK0KX31-1", "protein_name": "Phospholipid-transporting ATPase", "gene_name": "Atp11b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0ABK0KX31", "url": "https://www.uniprot.org/uniprotkb/A0ABK0KX31" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.35635573", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Clinton K, Elshenawy Mohamed M, Morales-Rios Edgar, Motz Carina, Yildiz Ahmet, Carter Andrew P", "reference": { "type": "PubMed", "id": "29420470", "url": "https://pubmed.ncbi.nlm.nih.gov/29420470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A286ZK88-1", "protein_name": "Dynactin subunit 5", "gene_name": "DCTN5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0PFK7-2", "protein_name": "F-actin-capping protein subunit beta", "gene_name": "CAPZB", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5G5-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LHK5-1", "protein_name": "Actin-related protein 10", "gene_name": "ACTR10", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q6QAQ1-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QD80-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Pig" }, { 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"journal": "Domestic animal endocrinology", "date": "2020-04", "authors": "Basini G, Ragionieri L, Bussolati S, Di Lecce R, Cacchioli A, Dettin M, Cantoni A M, Grolli S, La Bella O, Zamuner A, Grasselli F", "reference": { "type": "PubMed", "id": "31955063", "url": "https://pubmed.ncbi.nlm.nih.gov/31955063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A5G2QQD0-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q764M9-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.31955063", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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swine quantitative trait locus for number of vertebrae and analysis of an orphan nuclear receptor, germ cell nuclear factor (NR6A1).", "journal": "Genome research", "date": "2007-05", "authors": "Mikawa Satoshi, Morozumi Takeya, Shimanuki Shin-Ichi, Hayashi Takeshi, Uenishi Hirohide, Domukai Michiko, Okumura Naohiko, Awata Takashi", "reference": { "type": "PubMed", "id": "17416745", "url": "https://pubmed.ncbi.nlm.nih.gov/17416745" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0P8Z4-1", "protein_name": "Nuclear receptor subfamily 6 group A member 1", "gene_name": "NR6A1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0P8Z5-1", "protein_name": "BRCA1-A complex subunit RAP80", "gene_name": "UIMC1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P79387-1", "protein_name": "Steroidogenic factor 1", "gene_name": "NR5A1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q29361-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": 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the female pig reproductive system.", "journal": "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "date": "2009-01", "authors": "Skowronski Mariusz T, Kwon Tae-Hwan, Nielsen S\u00f8ren", "reference": { "type": "PubMed", "id": "18824632", "url": "https://pubmed.ncbi.nlm.nih.gov/18824632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A8W649-1", "protein_name": "Aquaporin-5", "gene_name": "AQP5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q6PQZ1-1", "protein_name": "Aquaporin-1", "gene_name": "AQP1", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A8W649", "url": "https://www.uniprot.org/uniprotkb/A8W649" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.18824632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 6 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_n_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 9 }, { "field": "n_linked_sites", "count": 9 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 9 }, { "field": "exact_n_linked_sites", "count": 9 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] } ]