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chlorophyll a reductase functions in metabolic channeling of chlorophyll breakdown intermediates during leaf senescence.", "journal": "Biochem. 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"url": "https://www.uniprot.org/uniprotkb/Q9FJT7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19948787", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-MYC down-regulated-like proteins regulate meristem initiation by modulating auxin transport and MAX2 expression.", "journal": "PloS one", "date": "2013", "authors": "Mudgil Yashwanti, Ghawana Sanjay, Jones Alan M", "reference": { "type": "PubMed", "id": "24223735", "url": "https://pubmed.ncbi.nlm.nih.gov/24223735" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FJT7-1", "protein_name": "Protein NDL1", "gene_name": "NDL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUN1-1", "protein_name": "Protein NDL3", "gene_name": "NDL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ASU8-1", "protein_name": "Protein NDL2", "gene_name": "NDL2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FJT7", "url": "https://www.uniprot.org/uniprotkb/Q9FJT7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24223735", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Carboxyl-methylation of prenylated calmodulin CaM53 is required for efficient plasma membrane targeting of the protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2000-12", "authors": "Rodr\u00edguez-Concepci\u00f3n M, Toledo-Ortiz G, Yalovsky S, Caldelari D, Gruissem W", "reference": { "type": "PubMed", "id": "11135111", "url": "https://pubmed.ncbi.nlm.nih.gov/11135111" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FMW9-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase A", "gene_name": "ICMTA; STE14A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11135111", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and functional expression in yeast of a prenylcysteine alpha-carboxyl methyltransferase gene from Arabidopsis thaliana.", "journal": "Plant molecular biology", "date": "2001-03", "authors": "Crowell D N, Kennedy M", "reference": { "type": "PubMed", "id": "11352465", "url": "https://pubmed.ncbi.nlm.nih.gov/11352465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FMW9-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase A", "gene_name": "ICMTA; STE14A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11352465", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prenylcysteine alpha-carboxyl methyltransferase expression and function in Arabidopsis thaliana.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-12", "authors": "Narasimha Chary S, Bultema Rebecca L, Packard Clay E, Crowell Dring N", "reference": { "type": "PubMed", "id": "12472689", "url": "https://pubmed.ncbi.nlm.nih.gov/12472689" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FMW9-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase A", "gene_name": "ICMTA; STE14A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93W54-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase B", "gene_name": "ICMTB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12472689", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional analysis of Arabidopsis postprenylation CaaX processing enzymes and their function in subcellular protein targeting.", "journal": "Plant physiology", "date": "2008-09", "authors": "Bracha-Drori Keren, Shichrur Keren, Lubetzky Tsofnat Cohen, Yalovsky Shaul", "reference": { "type": "PubMed", "id": "18641086", "url": "https://pubmed.ncbi.nlm.nih.gov/18641086" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FMW9-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase A", "gene_name": "ICMTA; STE14A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GW19-1", "protein_name": "CAAX prenyl protease 2", "gene_name": "FACE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX88-1", "protein_name": "CAAX prenyl protease 1 homolog", "gene_name": "ATSTE24; FACE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93W54-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase B", "gene_name": "ICMTB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 111, "end_pos": 111, "sequence_org": "N", "sequence_mut": "R", "comment": "No effect; when associated with R-112 and E-165. Activity increased to the level of that of ICMTB; when associated with R-112; E-165; Q-187 and R-188.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" }, { "database": "PubMed", "id": "18641086", "url": "https://pubmed.ncbi.nlm.nih.gov/18641086" } ], "uniprot_canonical_ac": "Q9FMW9-1" }, { "start_pos": 112, "end_pos": 112, "sequence_org": "Y", "sequence_mut": "R", "comment": "No effect; when associated with R-111 and E-165. Activity increased to the level of that of ICMTB; when associated with R-111; E-165; Q-187 and R-188.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" }, { "database": "PubMed", "id": "18641086", "url": "https://pubmed.ncbi.nlm.nih.gov/18641086" } ], "uniprot_canonical_ac": "Q9FMW9-1" }, { "start_pos": 165, "end_pos": 165, "sequence_org": "Q", "sequence_mut": "E", "comment": "No effect. No effect; when associated with R-111 and R-112. Activity increased to the level of that of ICMTB; when associated with R-111; R-112; Q-187 and R-188.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" }, { "database": "PubMed", "id": "18641086", "url": "https://pubmed.ncbi.nlm.nih.gov/18641086" } ], "uniprot_canonical_ac": "Q9FMW9-1" }, { "start_pos": 187, "end_pos": 187, "sequence_org": "E", "sequence_mut": "Q", "comment": "Activity increased to the level of that of ICMTB; when associated with R-111; R-112; E-165 and R-188.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" }, { "database": "PubMed", "id": "18641086", "url": "https://pubmed.ncbi.nlm.nih.gov/18641086" } ], "uniprot_canonical_ac": "Q9FMW9-1" }, { "start_pos": 188, "end_pos": 188, "sequence_org": "S", "sequence_mut": "R", "comment": "Activity increased to the level of that of ICMTB; when associated with R-111; R-112; E-165 and Q-187.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" }, { "database": "PubMed", "id": "18641086", "url": "https://pubmed.ncbi.nlm.nih.gov/18641086" } ], "uniprot_canonical_ac": "Q9FMW9-1" } ], "record_id": "pubmed.18641086", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isoprenylcysteine methylation and demethylation regulate abscisic acid signaling in Arabidopsis.", "journal": "The Plant cell", "date": "2008-10", "authors": "Huizinga David H, Omosegbon Olutope, Omery Bilal, Crowell Dring N", "reference": { "type": "PubMed", "id": "18957507", "url": "https://pubmed.ncbi.nlm.nih.gov/18957507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FMW9-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase A", "gene_name": "ICMTA; STE14A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93W54-1", "protein_name": "Protein-S-isoprenylcysteine O-methyltransferase B", "gene_name": "ICMTB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AS5-1", "protein_name": "Isoprenylcysteine alpha-carbonyl methylesterase ICME", "gene_name": "ICME", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMW9", "url": "https://www.uniprot.org/uniprotkb/Q9FMW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18957507", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis.", "journal": "PLoS Biol.", "date": "2006", "authors": "Levesque Mitchell P, Vernoux Teva, Busch Wolfgang, Cui Hongchang, Wang Jean Y, Blilou Ikram, Hassan Hala, Nakajima Keiji, Matsumoto Noritaka, Lohmann Jan U, Scheres Ben, Benfey Philip N", "reference": { "type": "PubMed", "id": "16640459", "url": "https://pubmed.ncbi.nlm.nih.gov/16640459" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFH3-1", "protein_name": "Zinc finger protein NUTCRACKER", "gene_name": "NUC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M384-1", "protein_name": "Protein SCARECROW", "gene_name": "SCR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWA6-1", "protein_name": "Zinc finger protein MAGPIE", "gene_name": "MGP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZF7-1", "protein_name": "Protein SHORT-ROOT", "gene_name": "SHR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFH3", "url": "https://www.uniprot.org/uniprotkb/Q9FFH3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16640459", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MIDGET unravels functions of the Arabidopsis topoisomerase VI complex in DNA endoreduplication, chromatin condensation, and transcriptional silencing.", "journal": "The Plant cell", "date": "2007-10", "authors": "Kirik Viktor, Schrader Andrea, Uhrig Joachim F, Hulskamp Martin", "reference": { "type": "PubMed", "id": "17951446", "url": "https://pubmed.ncbi.nlm.nih.gov/17951446" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FLU1-1", "protein_name": "DNA-binding protein BIN4", "gene_name": "BIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81242-1", "protein_name": "DNA-binding protein RHL1", "gene_name": "RHL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZ03-1", "protein_name": "DNA topoisomerase 6 subunit A", "gene_name": "TOP6A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLU1", "url": "https://www.uniprot.org/uniprotkb/Q9FLU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17951446", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis.", "journal": "The Plant cell", "date": "2007-11", "authors": "Breuer Christian, Stacey Nicola J, West Christopher E, Zhao Yunde, Chory Joanne, Tsukaya Hirokazu, Azumi Yoshitaka, Maxwell Anthony, Roberts Keith, Sugimoto-Shirasu Keiko", "reference": { "type": "PubMed", "id": "18055605", "url": "https://pubmed.ncbi.nlm.nih.gov/18055605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FLU1-1", "protein_name": "DNA-binding protein BIN4", "gene_name": "BIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81242-1", "protein_name": "DNA-binding protein RHL1", "gene_name": "RHL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZ03-1", "protein_name": "DNA topoisomerase 6 subunit A", "gene_name": "TOP6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5V6-1", "protein_name": "DNA topoisomerase 6 subunit B", "gene_name": "TOP6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLU1", "url": "https://www.uniprot.org/uniprotkb/Q9FLU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18055605", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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Frank, Lamkemeyer Petra, K\u00f6nig Janine, Finkemeier Iris, Kandlbinder Andrea, Baier Margarete, Dietz Karl-Josef", "reference": { "type": "PubMed", "id": "12529539", "url": "https://pubmed.ncbi.nlm.nih.gov/12529539" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C5R8-1", "protein_name": "2-Cys peroxiredoxin BAS1-like, chloroplastic", "gene_name": "2-CYS", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRZ4-1", "protein_name": "Peroxiredoxin-2C", "gene_name": "PRXIIC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96291-1", "protein_name": "2-Cys peroxiredoxin BAS1, chloroplastic", "gene_name": "BAS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU86-1", "protein_name": "Peroxiredoxin Q, chloroplastic", "gene_name": "PRXQ", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5R8", "url": 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kinesins contains a conserved a-type cyclin-dependent kinase site implicated in folding and dimerization.", "journal": "Plant Physiol.", "date": "2004", "authors": "Vanstraelen Marleen, Torres Acosta Juan Antonio, De Veylder Lieven, Inz\u00e9 Dirk, Geelen Danny", "reference": { "type": "PubMed", "id": "15247388", "url": "https://pubmed.ncbi.nlm.nih.gov/15247388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FKP4-1", "protein_name": "Kinesin-like protein KIN-14B", "gene_name": "KAC2; KIN14B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX99-1", "protein_name": "Kinesin-like protein KIN-14A", "gene_name": "KIN14A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKP4", "url": "https://www.uniprot.org/uniprotkb/Q9FKP4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" 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"2010-05-11", "authors": "Suetsugu Noriyuki, Yamada Noboru, Kagawa Takatoshi, Yonekura Hisashi, Uyeda Taro Q P, Kadota Akeo, Wada Masamitsu", "reference": { "type": "PubMed", "id": "20418504", "url": "https://pubmed.ncbi.nlm.nih.gov/20418504" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FKP4-1", "protein_name": "Kinesin-like protein KIN-14B", "gene_name": "KAC2; KIN14B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX99-1", "protein_name": "Kinesin-like protein KIN-14A", "gene_name": "KIN14A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKP4", "url": "https://www.uniprot.org/uniprotkb/Q9FKP4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 134, "end_pos": 134, "sequence_org": "N", "sequence_mut": "K", "comment": "Decreases 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understanding the massive accumulation of fumarate.", "journal": "The FEBS journal", "date": "2018-06", "authors": "Zubimendi Juan P, Martinatto Andrea, Valacco Maria P, Moreno Silvia, Andreo Carlos S, Drincovich Mar\u00eda F, Tronconi Marcos A", "reference": { "type": "PubMed", "id": "29688630", "url": "https://pubmed.ncbi.nlm.nih.gov/29688630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FI53-1", "protein_name": "Fumarate hydratase 2", "gene_name": "FUM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93033-1", "protein_name": "Fumarate hydratase 1, mitochondrial", "gene_name": "FUM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FI53", "url": "https://www.uniprot.org/uniprotkb/Q9FI53" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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during Arabidopsis seed development and germination.", "journal": "Plant Cell Physiol.", "date": "2006", "authors": "Elorza Alvaro, Roschzttardtz Hannetz, G\u00f3mez Isabel, Mouras Armand, Holuigue Loreto, Araya Alejandro, Jordana Xavier", "reference": { "type": "PubMed", "id": "16249327", "url": "https://pubmed.ncbi.nlm.nih.gov/16249327" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FJP9-1", "protein_name": "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial", "gene_name": "SDH2-3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FJP9", "url": "https://www.uniprot.org/uniprotkb/Q9FJP9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16249327", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.", "journal": "PloS one", "date": "2016", "authors": "Daniel Bastian, Wallner Silvia, Steiner Barbara, Oberdorfer Gustav, Kumar Prashant, van der Graaff Eric, Roitsch Thomas, Sensen Christoph W, Gruber Karl, Macheroux Peter", "reference": { "type": "PubMed", "id": "27276217", "url": "https://pubmed.ncbi.nlm.nih.gov/27276217" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FI21-1", "protein_name": 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed.", "journal": "Plant Cell", "date": "2001", "authors": "Nesi N, Jond C, Debeaujon I, Caboche M, Lepiniec L", "reference": { "type": "PubMed", "id": "11549766", "url": "https://pubmed.ncbi.nlm.nih.gov/11549766" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FJA2-1", "protein_name": "Transcription factor TT2", "gene_name": "TT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FJA2", "url": "https://www.uniprot.org/uniprotkb/Q9FJA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11549766", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis PEX19 is a dimeric protein that binds the peroxin PEX10.", "journal": "Molecular membrane biology", "date": "2006", "authors": "Hadden Dawn A, Phillipson Belinda A, Johnston Katherine A, Brown Laura-Anne, Manfield Iain W, El-Shami Mahmoud, Sparkes Imogen A, Baker Alison", "reference": { "type": "PubMed", "id": "16923726", "url": "https://pubmed.ncbi.nlm.nih.gov/16923726" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94EI3-1", "protein_name": "Peroxisome biogenesis protein 19-2", "gene_name": "PEX19-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRQ3-1", "protein_name": "Peroxisome biogenesis protein 19-1", "gene_name": "PEX19-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYU4-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94EI3", "url": "https://www.uniprot.org/uniprotkb/Q94EI3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants.", "journal": "Plant & cell physiology", "date": "2007-06", "authors": "Nito Kazumasa, Kamigaki Akane, Kondo Maki, 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Mariconti Luisa, Rossignol Pascale, Perennes Claudette, Cella Rino, Bergounioux Catherine", "reference": { "type": "PubMed", "id": "12089153", "url": "https://pubmed.ncbi.nlm.nih.gov/12089153" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FL33-1", "protein_name": "DNA replication licensing factor MCM3", "gene_name": "MCM3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FL33", "url": "https://www.uniprot.org/uniprotkb/Q9FL33" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12089153", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two linked pairs of Arabidopsis TNL resistance genes independently confer recognition of bacterial effector AvrRps4.", "journal": "Nature communications", "date": "2015-03-06", "authors": "Saucet Simon B, Ma Yan, Sarris Panagiotis F, Furzer Oliver J, Sohn Kee Hoon, Jones Jonathan D G", "reference": { "type": "PubMed", "id": "25744164", "url": "https://pubmed.ncbi.nlm.nih.gov/25744164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FL92-1", "protein_name": "Disease 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STARCH is required for localising GRANULE-BOUND STARCH SYNTHASE to starch granules and for normal amylose synthesis in Arabidopsis.", "journal": "PLoS biology", "date": "2015-02", "authors": "Seung David, Soyk Sebastian, Coiro Mario, Maier Benjamin A, Eicke Simona, Zeeman Samuel C", "reference": { "type": "PubMed", "id": "25710501", "url": "https://pubmed.ncbi.nlm.nih.gov/25710501" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94AX2-1", "protein_name": "Protein PTST, chloroplastic", "gene_name": "PTST", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MAQ0-1", "protein_name": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "gene_name": "GBSS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AX2", "url": "https://www.uniprot.org/uniprotkb/Q94AX2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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suggests the lysine histidine transporter 1 to be involved in plant uptake of amino acids.", "journal": "Plant physiology", "date": "2007-04", "authors": "Svennerstam Henrik, Ganeteg Ulrika, Bellini Catherine, N\u00e4sholm Torgny", "reference": { "type": "PubMed", "id": "17293438", "url": "https://pubmed.ncbi.nlm.nih.gov/17293438" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FKS8-1", "protein_name": "Lysine histidine transporter 1", "gene_name": "LHT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKS8", "url": "https://www.uniprot.org/uniprotkb/Q9FKS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17293438", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Root uptake of cationic amino acids by Arabidopsis depends on functional expression of amino acid permease 5.", "journal": "The New phytologist", "date": "2008", "authors": "Svennerstam Henrik, Ganeteg Ulrika, N\u00e4sholm Torgny", "reference": { "type": "PubMed", "id": "18681934", "url": "https://pubmed.ncbi.nlm.nih.gov/18681934" }, "referenced_glycans": [], 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A unique beta-1,3-galactosyltransferase is indispensable for the biosynthesis of N-glycans containing Lewis a structures in Arabidopsis thaliana.", "journal": "Plant Cell", "date": "2007", "authors": "Strasser Richard, Bondili Jayakumar Singh, Vavra Ulrike, Schoberer Jennifer, Svoboda Barbara, Gl\u00f6ssl Josef, L\u00e9onard Renaud, Stadlmann Johannes, Altmann Friedrich, Steinkellner Herta, Mach Lukas", "reference": { "type": "PubMed", "id": "17630273", "url": "https://pubmed.ncbi.nlm.nih.gov/17630273" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ASW1-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT3", "gene_name": "GALT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXG6-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT4", "gene_name": "GALT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7F9-1", "protein_name": "Beta-1,3-galactosyltransferase GALT1", "gene_name": "GALT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX55-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT5", "gene_name": "GALT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A7XDQ9-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT2", "gene_name": "GALT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV16-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT6", "gene_name": "GALT6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ASW1", "url": "https://www.uniprot.org/uniprotkb/Q9ASW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17630273", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.", "journal": "BMC plant biology", "date": "2015-12-21", "authors": "Basu Debarati, Tian Lu, Wang Wuda, Bobbs Shauni, Herock Hayley, Travers Andrew, Showalter Allan M", "reference": { "type": "PubMed", "id": "26690932", "url": "https://pubmed.ncbi.nlm.nih.gov/26690932" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ASW1-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT3", "gene_name": "GALT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXG6-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT4", "gene_name": "GALT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX55-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT5", "gene_name": "GALT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A7XDQ9-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT2", "gene_name": "GALT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV16-1", "protein_name": "Hydroxyproline O-galactosyltransferase GALT6", "gene_name": "GALT6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ASW1", "url": "https://www.uniprot.org/uniprotkb/Q9ASW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26690932", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis IWS1 interacts with transcription factor BES1 and is involved in plant steroid hormone brassinosteroid regulated gene expression.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2010", "authors": "Li Lei, Ye Huaxun, Guo Hongqing, Yin Yanhai", "reference": { "type": "PubMed", "id": "20139304", "url": "https://pubmed.ncbi.nlm.nih.gov/20139304" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49413-1", "protein_name": "Protein IWS1 homolog 2", "gene_name": "IWS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LN63-1", "protein_name": "Protein BRASSINAZOLE-RESISTANT 2", "gene_name": "BES1; BZR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MS85-1", "protein_name": "Transcription elongation factor SPT6 homolog", "gene_name": "GTB1; SPT6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4ICK8-1", "protein_name": "Protein IWS1 homolog 1", "gene_name": "IWS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49413", "url": "https://www.uniprot.org/uniprotkb/O49413" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20139304", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis coactivator ALY-like proteins, DIP1 and DIP2, interact physically with the DNA-binding domain of the Zn-finger poly(ADP-ribose) polymerase.", "journal": "Journal of experimental botany", "date": "2001-06", "authors": "Storozhenko S, Inz\u00e9 D, Van Montagu M, Kushnir S", "reference": { "type": "PubMed", "id": "11432957", "url": "https://pubmed.ncbi.nlm.nih.gov/11432957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NQ72-1", "protein_name": "THO complex subunit 4D", "gene_name": "ALY4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94EH8-1", "protein_name": "THO complex subunit 4C", "gene_name": "ALY3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ72", "url": "https://www.uniprot.org/uniprotkb/Q6NQ72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11432957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Relocalization of nuclear ALY proteins to the cytoplasm by the tomato bushy stunt virus P19 pathogenicity protein.", "journal": "Plant Physiol.", "date": "2004", "authors": "Uhrig Joachim F, Canto Tomas, Marshall David, MacFarlane Stuart A", "reference": { "type": "PubMed", "id": "15299117", "url": "https://pubmed.ncbi.nlm.nih.gov/15299117" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NQ72-1", "protein_name": "THO complex subunit 4D", "gene_name": "ALY4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L719-1", "protein_name": "THO complex subunit 4B", "gene_name": "ALY2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L773-1", "protein_name": "THO complex subunit 4A", "gene_name": "ALY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94EH8-1", "protein_name": "THO complex subunit 4C", "gene_name": "ALY3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ72", "url": "https://www.uniprot.org/uniprotkb/Q6NQ72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15299117", "abstract": "", "glycosylation": [], 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