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Biol.", "date": "2007", "authors": "Zapata Juan M, Mart\u00ednez-Garc\u00eda Vanesa, Lefebvre Sophie", "reference": { "type": "PubMed", "id": "17633013", "url": "https://pubmed.ncbi.nlm.nih.gov/17633013" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D5K228-1", "protein_name": "Protein RESTRICTED TEV MOVEMENT 3", "gene_name": "RTM3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "D5K228", "url": "https://www.uniprot.org/uniprotkb/D5K228" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17633013", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Adaptation of tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes.", "journal": "Philosophical transactions of the Royal Society of London. 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"OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana.", "journal": "The Plant journal : for cell and molecular biology", "date": "2011-07", "authors": "Li Eryang, Wang Shucai, Liu Yuanyuan, Chen Jin-Gui, Douglas Carl J", "reference": { "type": "PubMed", "id": "21457372", "url": "https://pubmed.ncbi.nlm.nih.gov/21457372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HNU8-1", "protein_name": "Transcription repressor OFP4", "gene_name": "OFP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZW2-1", "protein_name": "Transcription repressor OFP1", "gene_name": "OFP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HNU8", "url": "https://www.uniprot.org/uniprotkb/F4HNU8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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Mol. Evol.", "date": "2008", "authors": "Moore Richard C, Stevens M Henry H", "reference": { "type": "PubMed", "id": "18273534", "url": "https://pubmed.ncbi.nlm.nih.gov/18273534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HRS2-1", "protein_name": "Protein SWEETIE", "gene_name": "SWEETIE", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LFN2-1", "protein_name": "Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770", "gene_name": "F20H23.20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96524-1", "protein_name": "Cryptochrome-2", "gene_name": "CRY2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFN0-1", "protein_name": "GDSL esterase/lipase At5g03810", "gene_name": "F8F6.20; MED24.11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93825-1", "protein_name": "Ethylene response sensor 2", "gene_name": "ERS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Has Arabidopsis SWEETIE protein a role in sugar flux and utilization?", "journal": "Plant signaling & behavior", "date": "2008-09", "authors": "Veyres Nicolas, Aono Mitsuko, Sangwan-Norreel Brigitte S, Sangwan Rajbir S", "reference": { "type": "PubMed", "id": "19704840", "url": "https://pubmed.ncbi.nlm.nih.gov/19704840" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HRS2-1", "protein_name": "Protein SWEETIE", "gene_name": "SWEETIE", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HRS2", "url": "https://www.uniprot.org/uniprotkb/F4HRS2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19704840", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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[3702]" } ], "mutagenesis": [ { "start_pos": 230, "end_pos": 230, "sequence_org": "G", "sequence_mut": "E", "comment": "In ale1-2; Seedlings lethality when homozygous due to water loss. 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis.", "journal": "Development (Cambridge, England)", "date": "2007-05", "authors": "Tanaka Hirokazu, Watanabe Masaru, Sasabe Michiko, Hiroe Tomonori, Tanaka Toshihiro, Tsukaya Hirokazu, Ikezaki Masaya, Machida Chiyoko, Machida Yasunori", "reference": { "type": "PubMed", "id": "17376810", "url": "https://pubmed.ncbi.nlm.nih.gov/17376810" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HYR6-1", "protein_name": "Subtilisin-like protease SBT2.4", "gene_name": "SBT2.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S728-1", "protein_name": "Protodermal factor 1", "gene_name": "PDF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWW0-1", "protein_name": "Receptor-like serine/threonine-protein kinase ALE2", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots.", "journal": "Plant J.", "date": "2008", "authors": "Yamaguchi Masatoshi, Kubo Minoru, Fukuda Hiroo, Demura Taku", "reference": { "type": "PubMed", "id": "18445131", "url": "https://pubmed.ncbi.nlm.nih.gov/18445131" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HYV5-1", "protein_name": "NAC domain-containing protein 26", "gene_name": "NAC026", 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"database": "UniProtKB", "id": "F4HYV5", "url": "https://www.uniprot.org/uniprotkb/F4HYV5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18445131", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis.", "journal": "Plant Cell", "date": "2010", "authors": "Yamaguchi Masatoshi, Ohtani Misato, Mitsuda Nobutaka, Kubo Minoru, Ohme-Takagi Masaru, Fukuda Hiroo, Demura Taku", "reference": { "type": "PubMed", "id": "20388856", "url": "https://pubmed.ncbi.nlm.nih.gov/20388856" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HYV5-1", "protein_name": "NAC domain-containing protein 26", "gene_name": "NAC026", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FY93-1", "protein_name": "NAC domain-containing protein 83", "gene_name": "NAC083", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8W9-1", "protein_name": "NAC domain-containing protein 30", "gene_name": "NAC030", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWX2-1", "protein_name": "NAC domain-containing protein 7", "gene_name": "NAC007", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FY82-1", "protein_name": "NAC domain-containing protein 82", "gene_name": "NAC082", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HYV5", "url": "https://www.uniprot.org/uniprotkb/F4HYV5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20388856", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"authors": "Staal Jens, Kaliff Maria, Bohman Svante, Dixelius Christina", "reference": { "type": "PubMed", "id": "16623885", "url": "https://pubmed.ncbi.nlm.nih.gov/16623885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I594-1", "protein_name": "Disease resistance protein RML1A", "gene_name": "RLM1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAK1-1", "protein_name": "Disease resistance protein RML1B", "gene_name": "RLM1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I594", "url": "https://www.uniprot.org/uniprotkb/F4I594" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16623885", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Helical growth of the Arabidopsis mutant tortifolia1 reveals a plant-specific microtubule-associated protein.", "journal": "Curr. Biol.", "date": "2004", "authors": "Buschmann Henrik, Fabri Christoph O, Hauptmann Monika, Hutzler Peter, Laux Thomas, Lloyd Clive W, Sch\u00e4ffner Anton R", "reference": { "type": "PubMed", "id": "15324671", "url": "https://pubmed.ncbi.nlm.nih.gov/15324671" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I6M4-1", "protein_name": "TORTIFOLIA1-like protein 1", "gene_name": "TOR1L1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NPR6-1", "protein_name": "TORTIFOLIA1-like protein 3", "gene_name": "TOR1L3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZH1-1", "protein_name": "TORTIFOLIA1-like protein 4", "gene_name": "TOR1L4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIE4-1", "protein_name": "TORTIFOLIA1-like protein 5", "gene_name": "TOR1L5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IK92-1", "protein_name": "TORTIFOLIA1-like protein 2", "gene_name": "TOR1L2", "tax_name": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis.", "journal": "Plant Cell", "date": "2007", "authors": "Smith Lisa M, Pontes Olga, Searle Iain, Yelina Nataliya, Yousafzai Faridoon K, Herr Alan J, Pikaard Craig S, Baulcombe David C", "reference": { "type": "PubMed", "id": "17526749", "url": "https://pubmed.ncbi.nlm.nih.gov/17526749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I8S3-1", "protein_name": "SNF2 domain-containing protein CLASSY 3", "gene_name": "CLSY3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK10-1", "protein_name": "SNF2 domain-containing protein CLASSY 4", "gene_name": "CLSY4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K493-1", "protein_name": "SNF2 domain-containing protein CLASSY 2", "gene_name": "CLSY2", "tax_name": 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"uniprot_canonical_ac": "Q9S736-1", "protein_name": "Protein OBERON 1", "gene_name": "OBE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WVH0-1", "protein_name": "Protein REBELOTE", "gene_name": "RBL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IDC2-1", "protein_name": "Protein SLOW WALKER 2", "gene_name": "SWA2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IDJ0", "url": "https://www.uniprot.org/uniprotkb/F4IDJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.30338215", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PCA22 acts as a suppressor of atrzf1 to mediate proline accumulation in response to abiotic stress in Arabidopsis.", "journal": "Journal of experimental botany", "date": "2017-03-01", "authors": "Kim Ah-Reum, Min Ji-Hee, Lee Kyeong-Hwan, Kim Cheol Soo", "reference": { "type": "PubMed", "id": "28369480", "url": "https://pubmed.ncbi.nlm.nih.gov/28369480" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IIS6-1", "protein_name": "Protein PROLINE CONTENT ALTERNATIVE 22", 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{ "uniprot_canonical_ac": "F4JAU3-1", "protein_name": "Prolyl 4-hydroxylase 2", "gene_name": "P4H2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ILF8", "url": "https://www.uniprot.org/uniprotkb/F4ILF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21680836", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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gene encodes the plastid RpoTp RNA polymerase, which is required for chloroplast biogenesis and mesophyll cell proliferation in Arabidopsis.", "journal": "Plant physiology", "date": "2006-07", "authors": "Hricov\u00e1 Andrea, Quesada Victor, Micol Jos\u00e9 Luis", "reference": { "type": "PubMed", "id": "16698900", "url": "https://pubmed.ncbi.nlm.nih.gov/16698900" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O24600-1", "protein_name": "DNA-directed RNA polymerase 3, chloroplastic", "gene_name": "RPOT3; SCA3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O24600", "url": "https://www.uniprot.org/uniprotkb/O24600" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16698900", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Analysis of two members of a small gene family.", "journal": "Eur. J. Biochem.", "date": "1991", "authors": "Gantt J S, Lenvik T R", "reference": { "type": "PubMed", "id": "1765064", "url": "https://pubmed.ncbi.nlm.nih.gov/1765064" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26569-1", "protein_name": "Histone H1.2", "gene_name": "H12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P26568-1", "protein_name": "Histone H1.1", "gene_name": "F4H5.15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WUY1-1", "protein_name": "Calmodulin calcium-dependent NAD kinase", "gene_name": "NADKC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P26569", "url": "https://www.uniprot.org/uniprotkb/P26569" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.1765064", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation.", "journal": "Proc. 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U.S.A.", "date": "2010", "authors": "Nelissen Hilde, De Groeve Steven, Fleury Delphine, Neyt Pia, Bruno Leonardo, Bitonti Maria Beatrice, Vandenbussche Filip, Van der Straeten Dominique, Yamaguchi Takahiro, Tsukaya Hirokazu, Witters Erwin, De Jaeger Geert, Houben Andreas, Van Lijsebettens Mieke", "reference": { "type": "PubMed", "id": "20080602", "url": "https://pubmed.ncbi.nlm.nih.gov/20080602" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IQJ2-1", "protein_name": "Elongator complex protein 5", "gene_name": "ELP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L9Y2-1", "protein_name": "Elongator complex protein 6", "gene_name": "ELP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZR1-1", "protein_name": "Elongator complex protein 3", "gene_name": "HAG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C778-1", "protein_name": "Elongator complex protein 4", "gene_name": "ELP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNA4-1", "protein_name": "Elongator complex protein 1", "gene_name": "ELP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I1S7-1", "protein_name": "Elongator complex protein 2", "gene_name": "ELP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IQJ2", "url": "https://www.uniprot.org/uniprotkb/F4IQJ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20080602", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CLUMPED CHLOROPLASTS 1 is required for plastid separation in Arabidopsis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2011", "authors": "Yang Yue, Sage Tammy L, Liu Yi, Ahmad Tiara R, Marshall Wallace F, Shiu Shin-Han, Froehlich John E, Imre Kathleen M, Osteryoung Katherine W", "reference": { "type": "PubMed", "id": "22025705", "url": "https://pubmed.ncbi.nlm.nih.gov/22025705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IRM4-1", "protein_name": "Protein PHOX1", "gene_name": "PHOX1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JTI1-1", "protein_name": "Protein PHOX4", "gene_name": "PHOX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48802-1", "protein_name": "Protein CLMP1", "gene_name": "CLMP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IRM4", "url": "https://www.uniprot.org/uniprotkb/F4IRM4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana 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"authors": "Stein M\u00f3nica, Dittgen Jan, S\u00e1nchez-Rodr\u00edguez Clara, Hou Bi-Huei, Molina Antonio, Schulze-Lefert Paul, Lipka Volker, Somerville Shauna", "reference": { "type": "PubMed", "id": "16473969", "url": "https://pubmed.ncbi.nlm.nih.gov/16473969" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4J270-1", "protein_name": "Probable glucan endo-1,3-beta-glucosidase BG3", "gene_name": "BG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIE2-1", "protein_name": "ABC transporter G family member 36", "gene_name": "ABCG36", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J270", "url": "https://www.uniprot.org/uniprotkb/F4J270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 354, "end_pos": 354, "sequence_org": "G", "sequence_mut": "D", "comment": "In pen3-1; overaccumulation in leaves of 4-O-beta-D-glucosyl-indol-3-yl formamide (4OGlcI3F) upon Blumeria graminis conidiospore inoculation, a pathogen-inducible tryptophan-derived compound, which biosynthesis is dependent on the PEN2 metabolic pathway. More susceptible to the necrotrophic pathogen Plectosphaerella cucumerina, with higher frequency of fungal penetration and increased formation of elongating secondary hyphae after the first haustorium development. Fully defective in preinvasive defense to nonadapted powdery mildews (e.g. Blumeria graminis and Erysiphe pisi). Extensive leaf chlorosis and reduced fungal growth upon infection by the host-adapted pathogen Golovinomyces orontii associated with a hyperaccumulation of both free and total salicylic acid (SA) as well as pathogen-inducible hydrogen peroxides in leaves. Impaired microbe-associated molecular patterns (MAMPs)-induced (e.g. flg22) callose deposition. Hypersensitivity to root growth inhibition by indole 3-butyric acid (IBA), an auxin precursor. Reduced accumulation (at protein level).", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "26023163", "url": "https://pubmed.ncbi.nlm.nih.gov/26023163" }, { "database": "PubMed", "id": "16473969", "url": "https://pubmed.ncbi.nlm.nih.gov/16473969" } ], "uniprot_canonical_ac": "Q9XIE2-1" }, { "start_pos": 915, "end_pos": 915, "sequence_org": "G", "sequence_mut": "S", "comment": "In pen3-2; overaccumulation in leaves of 4-O-beta-D-glucosyl-indol-3-yl formamide (4OGlcI3F) upon Blumeria graminis conidiospore inoculation, a pathogen-inducible tryptophan-derived compound, which biosynthesis is dependent on the PEN2 metabolic pathway. More susceptible to the necrotrophic pathogen P.cucumerina, with higher frequency of fungal penetration and increased formation of elongating secondary hyphae after the first haustorium development. Fully defective in preinvasive defense to nonadapted powdery mildews (e.g. Blumeria graminis and Erysiphe pisi). Extensive leaf chlorosis and reduced fungal growth upon infection by the host-adapted pathogen Golovinomyces orontii associated with an hyperaccumulation of both free and total salicylic acid (SA) as well as pathogen-inducible hydrogen peroxides in leaves. Impaired microbe-associated molecular patterns (MAMPs)-induced (e.g. flg22) callose deposition. Hypersensitivity to root growth inhibition by indole 3-butyric acid (IBA), an auxin precursor. Reduced accumulation (at protein level).", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "26023163", "url": "https://pubmed.ncbi.nlm.nih.gov/26023163" }, { "database": "PubMed", "id": "16473969", "url": "https://pubmed.ncbi.nlm.nih.gov/16473969" } ], "uniprot_canonical_ac": "Q9XIE2-1" } ], "record_id": "pubmed.16473969", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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\u03b2-1,3-glucanases in cell-to-cell movement of tobamoviruses.", "journal": "Molecular plant-microbe interactions : MPMI", "date": "2013-09", "authors": "Zavaliev Raul, Levy Amit, Gera Abed, Epel Bernard L", "reference": { "type": "PubMed", "id": "23656331", "url": "https://pubmed.ncbi.nlm.nih.gov/23656331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4J270-1", "protein_name": "Probable glucan endo-1,3-beta-glucosidase BG3", "gene_name": "BG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHX5-1", "protein_name": "Glucan endo-1,3-beta-glucosidase 10", "gene_name": "BG_PPAP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZJ2-1", "protein_name": "Probable glucan endo-1,3-beta-glucosidase At4g16260", "gene_name": "DL4170C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P33157-1", "protein_name": "Glucan endo-1,3-beta-glucosidase, acidic isoform", "gene_name": "BG2; PR2", "tax_name": "Mouse-ear cress" } 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Virol.", "date": "2010", "authors": "Liu Huiquan, Fu Yanping, Jiang Daohong, Li Guoqing, Xie Jiatao, Cheng Jiasen, Peng Youliang, Ghabrial Said A, Yi Xianhong", "reference": { "type": "PubMed", "id": "20810725", "url": "https://pubmed.ncbi.nlm.nih.gov/20810725" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4J8R4-1", "protein_name": "IAA-leucine resistant 2", "gene_name": "ILR2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J8R4", "url": "https://www.uniprot.org/uniprotkb/F4J8R4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20810725", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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Plantarum", "date": "2013", "authors": "Yu Qing-Bo, Lu Yang, Ma Qian, Zhao Tuan-Tuan, Huang Chao, Zhao Hui-Fang, Zhang Xiao-Lei, Lv Ruo-Hong, Yang Zhong-Nan", "reference": { "type": "PubMed", "id": "23082802", "url": "https://pubmed.ncbi.nlm.nih.gov/23082802" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JF21-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10", "gene_name": "PTAC10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84JF5-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14", "gene_name": "PTAC14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZV9-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7", "gene_name": "PTAC7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IHY7-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic", "gene_name": "PTAC12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M394-1", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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Plant Physiol.", "date": "2010", "authors": "Song Hongmiao, Fan Pengxiang, Shi Wuliang, Zhao Rongmin, Li Yinxin", "reference": { "type": "PubMed", "id": "20493581", "url": "https://pubmed.ncbi.nlm.nih.gov/20493581" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JFN3-1", "protein_name": "Heat shock protein 90-6, mitochondrial", "gene_name": "HSP90-6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7U4-1", "protein_name": "Co-chaperone protein p23-1", "gene_name": "P23-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9STX5-1", "protein_name": "Endoplasmin homolog", "gene_name": "HSP90-7; SHD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIF2-1", "protein_name": "Heat shock protein 90-5, chloroplastic", "gene_name": "HSP90-5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JFN3", "url": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of plant MSH2 and MSH6 genes in the UV-B-induced DNA damage response.", "journal": "Journal of experimental botany", "date": "2011-05", "authors": "Lario Luciana D, Ramirez-Parra Elena, Gutierrez Crisanto, Casati Paula, Spampinato Claudia P", "reference": { "type": "PubMed", "id": "21307385", "url": "https://pubmed.ncbi.nlm.nih.gov/21307385" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04716-1", "protein_name": "DNA mismatch repair protein MSH6", "gene_name": "MSH6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24617-1", "protein_name": "DNA mismatch repair protein MSH2", "gene_name": "MSH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04716", "url": "https://www.uniprot.org/uniprotkb/O04716" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21307385", "abstract": "", 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[] } ] }, { "title": "The forever young gene encodes an oxidoreductase required for proper development of the Arabidopsis vegetative shoot apex.", "journal": "The Plant journal : for cell and molecular biology", "date": "1994-12", "authors": "Callos J D, DiRado M, Xu B, Behringer F J, Link B M, Medford J I", "reference": { "type": "PubMed", "id": "7849756", "url": "https://pubmed.ncbi.nlm.nih.gov/7849756" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JJR8-1", "protein_name": "Dehydrogenase/reductase SDR family member FEY", "gene_name": "FEY", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JJR8", "url": "https://www.uniprot.org/uniprotkb/F4JJR8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7849756", "abstract": "", "glycosylation": [], "mutagenesis": 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Integr. Plant Biol.", "date": "2009", "authors": "Liu Man, Yuan Li, Liu Nai-You, Shi Dong-Qiao, Liu Jie, Yang Wei-Cai", "reference": { "type": "PubMed", "id": "19261069", "url": "https://pubmed.ncbi.nlm.nih.gov/19261069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JWP9-1", "protein_name": "109 kDa U5 small nuclear ribonucleoprotein component GFL", "gene_name": "GFL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNC5-1", "protein_name": "110 kDa U5 small nuclear ribonucleoprotein component CLO", "gene_name": "CLO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSD2-1", "protein_name": "Pre-mRNA-processing-splicing factor 8A", "gene_name": "PRP8A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYP1-1", "protein_name": "DExH-box ATP-dependent RNA helicase DExH12", "gene_name": "BRR2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"Arabidopsis DNA methyltransferase AtDNMT2 associates with histone deacetylase AtHD2s activity.", "journal": "Biochemical and biophysical research communications", "date": "2010-05-28", "authors": "Song Yuan, Wu Keqiang, Dhaubhadel Sangeeta, An Lizhe, Tian Lining", "reference": { "type": "PubMed", "id": "20331964", "url": "https://pubmed.ncbi.nlm.nih.gov/20331964" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JWT7-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase 2", "gene_name": "DNMT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVE6-1", "protein_name": "Histone deacetylase HDT1", "gene_name": "HDA3; HDT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56WH4-1", "protein_name": "Histone deacetylase HDT2", "gene_name": "HDT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZR5-1", "protein_name": "Histone deacetylase HDT3", "gene_name": "HDT3", "tax_name": "Mouse-ear cress" } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Overexpression of an Arabidopsis gene encoding a subtilase (AtSBT5.4) produces a clavata-like phenotype.", "journal": "Planta", "date": "2009-09", "authors": "Liu Jian-Xiang, Srivastava Renu, Howell Stephen", "reference": { "type": "PubMed", "id": "19588163", "url": "https://pubmed.ncbi.nlm.nih.gov/19588163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JXC5-1", "protein_name": "Subtilisin-like protease SBT5.4", "gene_name": "SBT5.4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JXC5", "url": "https://www.uniprot.org/uniprotkb/F4JXC5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 567, "end_pos": 567, "sequence_org": "S", "sequence_mut": "A", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Two G-protein-coupled-receptor candidates, Cand2 and Cand7, are involved in Arabidopsis root growth mediated by the bacterial quorum-sensing signals N-acyl-homoserine lactones.", "journal": "Biochemical and biophysical research communications", "date": "2012-01-20", "authors": "Jin Guoping, Liu Fang, Ma Hong, Hao Shaoyan, Zhao Qian, Bian Zirui, Jia Zhenhua, Song Shuishan", "reference": { "type": "PubMed", "id": "22206669", "url": "https://pubmed.ncbi.nlm.nih.gov/22206669" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JY11-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 7", "gene_name": "CAND7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AH1-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 2", "gene_name": "CAND2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JY11", "url": "https://www.uniprot.org/uniprotkb/F4JY11" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22206669", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, 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"GNOM-LIKE 2, encoding an adenosine diphosphate-ribosylation factor-guanine nucleotide exchange factor protein homologous to GNOM and GNL1, is essential for pollen germination in Arabidopsis.", "journal": "Journal of integrative plant biology", "date": "2009-08", "authors": "Jia Dong-Jie, Cao Xi, Wang Wei, Tan Xiao-Yun, Zhang Xue-Qin, Chen Li-Qun, Ye De", "reference": { "type": "PubMed", "id": "19686373", "url": "https://pubmed.ncbi.nlm.nih.gov/19686373" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K2K3-1", "protein_name": "ARF guanine-nucleotide exchange factor GNL2", "gene_name": "GNL2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K2K3", "url": "https://www.uniprot.org/uniprotkb/F4K2K3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19686373", 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Wada Masamitsu", "reference": { "type": "PubMed", "id": "26324877", "url": "https://pubmed.ncbi.nlm.nih.gov/26324877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K5K6-1", "protein_name": "Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1", "gene_name": "PMIR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7Y219-1", "protein_name": "Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 2", "gene_name": "PMIR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8E6-1", "protein_name": "Protein PLASTID MOVEMENT IMPAIRED 1", "gene_name": "PMI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K5K6", "url": "https://www.uniprot.org/uniprotkb/F4K5K6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26324877", "abstract": "", "glycosylation": [], 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Kenneth, Wilkerson Curtis G, Pauly Markus", "reference": { "type": "PubMed", "id": "22474179", "url": "https://pubmed.ncbi.nlm.nih.gov/22474179" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K6F1-1", "protein_name": "Xyloglucan galactosyltransferase XLT2", "gene_name": "XLT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K6F1", "url": "https://www.uniprot.org/uniprotkb/F4K6F1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22474179", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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communications", "date": "2019-08-27", "authors": "Lange Heike, Ndecky Simon Y A, Gomez-Diaz Carlos, Pflieger David, Butel Nicolas, Zumsteg Julie, Kuhn Lauriane, Piermaria Christina, Chicher Johana, Christie Michael, Karaaslan Ezgi S, Lang Patricia L M, Weigel Detlef, Vaucheret Herv\u00e9, Hammann Philippe, Gagliardi Dominique", "reference": { "type": "PubMed", "id": "31455787", "url": "https://pubmed.ncbi.nlm.nih.gov/31455787" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K8S5-1", "protein_name": "Protein ECERIFERUM 16", "gene_name": "CER16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7XZF5-1", "protein_name": "Protein RST1", "gene_name": "RST1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K8S5", "url": "https://www.uniprot.org/uniprotkb/F4K8S5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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Xianpeng, Feng Tao, Li Shipeng, Zhao Huayan, Zhao Shuangshuang, Ma Changle, Jenks Matthew A, L\u00fc Shiyou", "reference": { "type": "PubMed", "id": "31941670", "url": "https://pubmed.ncbi.nlm.nih.gov/31941670" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K8S5-1", "protein_name": "Protein ECERIFERUM 16", "gene_name": "CER16", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K8S5", "url": "https://www.uniprot.org/uniprotkb/F4K8S5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.31941670", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Maria, Peirera Lucie, Vezon Daniel, Jolivet Sylvie, Froger Nicole, Chelysheva Liudmila, Grelon Mathilde, Mercier Rapha\u00ebl", "reference": { "type": "PubMed", "id": "18812090", "url": "https://pubmed.ncbi.nlm.nih.gov/18812090" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KG50-1", "protein_name": "Protein SHORTAGE IN CHIASMATA 1", "gene_name": "SHOC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JEP5-1", "protein_name": "DNA mismatch repair protein MSH5", "gene_name": "MSH5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4KG50", "url": "https://www.uniprot.org/uniprotkb/F4KG50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18812090", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"id": "F4KG58", "url": "https://www.uniprot.org/uniprotkb/F4KG58" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16942608", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]