[ { "title": "Plastocyanin of Arabidopsis thaliana; isolation and characterization of the gene and chloroplast import of the precursor protein.", "journal": "Gene", "date": "1988", "authors": "Vorst O, Oosterhoff-Teertstra R, Vankan P, Smeekens S, Weisbeek P", "reference": { "type": "PubMed", "id": "3396882", "url": "https://pubmed.ncbi.nlm.nih.gov/3396882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11490-1", "protein_name": "Plastocyanin minor isoform, chloroplastic", "gene_name": "PETE1; PETE", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P11490", "url": "https://www.uniprot.org/uniprotkb/P11490" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.3396882", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Val\u00e9rie, Mullen Robert T, Palmieri Ferdinando, Hanson Andrew D", "reference": { "type": "PubMed", "id": "23590975", "url": "https://pubmed.ncbi.nlm.nih.gov/23590975" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HW79-1", "protein_name": "Mitochondrial carrier protein CoAc1", "gene_name": "COAC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JU70-1", "protein_name": "Mitochondrial carrier protein CoAc2", "gene_name": "COAC2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HW79", "url": "https://www.uniprot.org/uniprotkb/F4HW79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23590975", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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deposits the histone H3.3 is conserved in Arabidopsis and facilitates transcriptional dynamics.", "journal": "Biol. Open", "date": "2014", "authors": "Nie Xin, Wang Haifeng, Li Jing, Holec Sarah, Berger Fr\u00e9d\u00e9ric", "reference": { "type": "PubMed", "id": "25086063", "url": "https://pubmed.ncbi.nlm.nih.gov/25086063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I700-1", "protein_name": "Ubinuclein-2", "gene_name": "UBN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JV59-1", "protein_name": "Calcineurin-binding protein 1", "gene_name": "CABIN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX78-1", "protein_name": "Ubinuclein-1", "gene_name": "UBN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9M6-1", "protein_name": "Probable histone chaperone ASF1A", "gene_name": "ASF1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59169-1", "protein_name": "Histone H3.3", "gene_name": "H33; HTR4; HTR5; HTR8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59226-1", "protein_name": 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"sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Are plant formins integral membrane proteins?", "journal": "Genome Biol.", "date": "2000", "authors": "Cvrckov\u00e1 F", "reference": { "type": "PubMed", "id": "11104517", "url": "https://pubmed.ncbi.nlm.nih.gov/11104517" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48682-1", "protein_name": "Formin-like protein 4", "gene_name": "FH4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04532-1", "protein_name": "Formin-like protein 8", "gene_name": "FH8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIE0-1", "protein_name": "Formin-like protein 7", "gene_name": "FH7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B77-1", "protein_name": "Formin-like protein 5", "gene_name": "FH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJX6-1", "protein_name": "Formin-like protein 6", "gene_name": "FH6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22824-1", "protein_name": "Formin-like protein 2", "gene_name": "FH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SE97-1", "protein_name": "Formin-like protein 1", "gene_name": "FH1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48682", "url": "https://www.uniprot.org/uniprotkb/O48682" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11104517", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.", "journal": "J. Mol. Biol.", "date": "2005", "authors": "Yamasaki Kazuhiko, Kigawa Takanori, Inoue Makoto, Yamasaki Tomoko, Yabuki Takashi, Aoki Masaaki, Seki Eiko, Matsuda Takayoshi, Tomo Yasuko, Terada Takaho, Shirouzu Mikako, Tanaka Akiko, Seki Motoaki, Shinozaki Kazuo, Yokoyama Shigeyuki", "reference": { "type": "PubMed", "id": "15811366", "url": "https://pubmed.ncbi.nlm.nih.gov/15811366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23116-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 3 protein", "gene_name": "EIL3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23116", "url": "https://www.uniprot.org/uniprotkb/O23116" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15811366", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MYB72 is required in early signaling steps of rhizobacteria-induced systemic resistance in Arabidopsis.", "journal": "Plant Physiol.", "date": "2008", "authors": "Van der Ent Sjoerd, Verhagen Bas W M, Van Doorn Ronald, Bakker Daniel, Verlaan Maarten G, Pel Michiel J C, Joosten Ruth G, Proveniers Marcel C G, Van Loon L C, Ton Jurriaan, Pieterse Corn\u00e9 M J", "reference": { "type": "PubMed", "id": "18218967", "url": "https://pubmed.ncbi.nlm.nih.gov/18218967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23116-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 3 protein", "gene_name": "EIL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGU3-1", "protein_name": "Transcription factor MYB72", "gene_name": "MYB72", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23116", "url": "https://www.uniprot.org/uniprotkb/O23116" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18218967", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins.", "journal": "Cell", "date": "1997-06-27", "authors": "Chao Q, Rothenberg M, Solano R, Roman G, Terzaghi W, Ecker J R", "reference": { "type": "PubMed", "id": "9215635", "url": "https://pubmed.ncbi.nlm.nih.gov/9215635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23116-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 3 protein", "gene_name": "EIL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLH0-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 1 protein", "gene_name": "EIL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23115-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 2 protein", "gene_name": "EIL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24606-1", "protein_name": "Protein ETHYLENE INSENSITIVE 3", "gene_name": "EIN3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23116", "url": "https://www.uniprot.org/uniprotkb/O23116" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9215635", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1.", "journal": "Genes & development", "date": "1998-12-01", "authors": "Solano R, Stepanova A, Chao Q, Ecker J R", "reference": { "type": "PubMed", "id": "9851977", "url": "https://pubmed.ncbi.nlm.nih.gov/9851977" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23116-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 3 protein", "gene_name": "EIL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLH0-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 1 protein", "gene_name": "EIL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23115-1", "protein_name": "ETHYLENE INSENSITIVE 3-like 2 protein", "gene_name": "EIL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LDC8-1", "protein_name": "Ethylene-responsive transcription factor 1B", "gene_name": "ERF1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24606-1", "protein_name": "Protein ETHYLENE INSENSITIVE 3", "gene_name": "EIN3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23116", "url": "https://www.uniprot.org/uniprotkb/O23116" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9851977", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular and biochemical characterization of the Fe(III) chelate reductase gene family in Arabidopsis thaliana.", "journal": "Plant & cell physiology", "date": "2005-09", "authors": "Wu Huilan, Li Lihua, Du Juan, Yuan Youxi, Cheng Xudong, Ling Hong-Qing", "reference": { "type": "PubMed", "id": "16006655", "url": "https://pubmed.ncbi.nlm.nih.gov/16006655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I4K7-1", "protein_name": "Ferric reduction oxidase 3, mitochondrial", "gene_name": "FRO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY13-1", "protein_name": "Ferric reduction oxidase 8, mitochondrial", "gene_name": "FRO8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W110-1", "protein_name": "Ferric reduction oxidase 4", "gene_name": "FRO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLW2-1", "protein_name": "Ferric reduction oxidase 5", "gene_name": "FRO5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWS6-1", "protein_name": "Ferric reduction oxidase 6", "gene_name": "FRO6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92949-1", "protein_name": "Ferric reduction oxidase 2", "gene_name": "FRO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3KTM0-1", "protein_name": "Ferric reduction oxidase 7, chloroplastic", "gene_name": "FRO7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I4K7", "url": "https://www.uniprot.org/uniprotkb/F4I4K7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16006655", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression profiling of the Arabidopsis ferric chelate reductase (FRO) gene family reveals differential regulation by iron and copper.", "journal": "Planta", "date": "2006", "authors": "Mukherjee Indrani, Campbell Nathan H, Ash Joshua S, Connolly Erin L", "reference": { "type": "PubMed", "id": "16362328", "url": "https://pubmed.ncbi.nlm.nih.gov/16362328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I4K7-1", "protein_name": "Ferric reduction oxidase 3, mitochondrial", "gene_name": "FRO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY13-1", "protein_name": "Ferric reduction oxidase 8, mitochondrial", "gene_name": "FRO8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W110-1", "protein_name": "Ferric reduction oxidase 4", "gene_name": "FRO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLW2-1", "protein_name": "Ferric reduction oxidase 5", "gene_name": "FRO5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMM2-1", "protein_name": "Probable ferric reduction oxidase 1", "gene_name": "FRO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWS6-1", "protein_name": "Ferric reduction oxidase 6", "gene_name": "FRO6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92949-1", "protein_name": "Ferric reduction oxidase 2", "gene_name": "FRO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3KTM0-1", "protein_name": "Ferric reduction oxidase 7, chloroplastic", "gene_name": "FRO7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I4K7", "url": "https://www.uniprot.org/uniprotkb/F4I4K7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16362328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cell identity mediates the response of Arabidopsis roots to abiotic stress.", "journal": "Science", "date": "2008", "authors": "Dinneny Jos\u00e9 R, Long Terri A, Wang Jean Y, Jung Jee W, Mace Daniel, Pointer Solomon, Barron Christa, Brady Siobhan M, Schiefelbein John, Benfey Philip N", "reference": { "type": "PubMed", "id": "18436742", "url": "https://pubmed.ncbi.nlm.nih.gov/18436742" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I4K7-1", "protein_name": "Ferric reduction oxidase 3, mitochondrial", "gene_name": "FRO3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I4K7", "url": "https://www.uniprot.org/uniprotkb/F4I4K7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18436742", 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Poulton Jonathan E", "reference": { "type": "PubMed", "id": "16814332", "url": "https://pubmed.ncbi.nlm.nih.gov/16814332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O80689-1", "protein_name": "Beta-glucosidase 45", "gene_name": "BGLU45", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80690-1", "protein_name": "Beta-glucosidase 46", "gene_name": "BGLU46", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80689", "url": "https://www.uniprot.org/uniprotkb/O80689" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16814332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": 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characterization of a cDNA encoding mitochondrial chaperonin 10 from Arabidopsis thaliana by functional complementation of an Escherichia coli groES mutant.", "journal": "The Plant journal : for cell and molecular biology", "date": "1996-12", "authors": "Koumoto Y, Tsugeki R, Shimada T, Mori H, Kondo M, Hara-Nishimura I, Nishimura M", "reference": { "type": "PubMed", "id": "9011092", "url": "https://pubmed.ncbi.nlm.nih.gov/9011092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34893-1", "protein_name": "10 kDa chaperonin, mitochondrial", "gene_name": "CPN10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34893", "url": "https://www.uniprot.org/uniprotkb/P34893" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9011092", "abstract": "", "glycosylation": [], 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A bestrophin-like protein modulates the proton motive force across the thylakoid membrane in Arabidopsis.", "journal": "Journal of integrative plant biology", "date": "2016-10", "authors": "Duan Zhikun, Kong Fanna, Zhang Lin, Li Wenjing, Zhang Jiao, Peng Lianwei", "reference": { "type": "PubMed", "id": "26947269", "url": "https://pubmed.ncbi.nlm.nih.gov/26947269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O80832-1", "protein_name": "Voltage-dependent chloride channel 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Natl. Acad. Sci. U.S.A.", "date": "2011", "authors": "Babiychuk Elena, Vandepoele Klaas, Wissing Josef, Garcia-Diaz Miguel, De Rycke Riet, Akbari Hana, Joub\u00e8s J\u00e9r\u00f4me, Beeckman Tom, J\u00e4nsch Lothar, Frentzen Margrit, Van Montagu Marc C E, Kushnir Sergei", "reference": { "type": "PubMed", "id": "21464319", "url": "https://pubmed.ncbi.nlm.nih.gov/21464319" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IHL3-1", "protein_name": "Transcription termination factor MTERF2, chloroplastic", "gene_name": "EMB2219; MTERF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FM80-1", "protein_name": "Transcription termination factor MTERF9, chloroplastic", "gene_name": "MTERF9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6A1-1", "protein_name": "Transcription termination factor MTERF15, mitochondrial", "gene_name": "MTERF15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK23-1", "protein_name": "Transcription termination factor MTERF8, chloroplastic", "gene_name": "MTERF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M219-1", "protein_name": "Transcription termination factor MTEF18, mitochondrial", "gene_name": "MTERF18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZT96-1", "protein_name": "Transcription termination factor MTERF4, chloroplastic", "gene_name": "MTERF4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84X53-1", "protein_name": "Transcription termination factor MTEF1, chloroplastic", "gene_name": "MTERF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JVI3-1", "protein_name": "Transcription termination factor MTERF5, chloroplastic", "gene_name": "MTERF5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZL6-1", "protein_name": "Transcription termination factor MTERF6, chloroplastic/mitochondrial", "gene_name": "MTERF6; PDE191", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IHL3", "url": "https://www.uniprot.org/uniprotkb/F4IHL3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21464319", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis thaliana mTERF proteins: evolution and functional classification.", "journal": "Front. Plant Sci.", "date": "2012", "authors": "Kleine Tatjana", "reference": { "type": "PubMed", "id": "23087700", "url": "https://pubmed.ncbi.nlm.nih.gov/23087700" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IHL3-1", "protein_name": "Transcription termination factor MTERF2, chloroplastic", "gene_name": "EMB2219; MTERF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FM80-1", "protein_name": "Transcription termination factor MTERF9, chloroplastic", "gene_name": "MTERF9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6A1-1", "protein_name": "Transcription termination factor MTERF15, mitochondrial", "gene_name": "MTERF15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK23-1", "protein_name": "Transcription termination factor MTERF8, chloroplastic", "gene_name": "MTERF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M219-1", "protein_name": "Transcription termination factor MTEF18, mitochondrial", "gene_name": "MTERF18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZT96-1", "protein_name": "Transcription termination factor MTERF4, chloroplastic", "gene_name": "MTERF4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84X53-1", "protein_name": "Transcription termination factor MTEF1, chloroplastic", "gene_name": "MTERF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JVI3-1", "protein_name": "Transcription termination factor MTERF5, chloroplastic", "gene_name": "MTERF5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZL6-1", "protein_name": "Transcription termination factor MTERF6, chloroplastic/mitochondrial", "gene_name": "MTERF6; PDE191", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ50-1", "protein_name": "Protein SEEDLING LETHAL 1, chloroplastic", "gene_name": "SL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IHL3", "url": "https://www.uniprot.org/uniprotkb/F4IHL3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23087700", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-12", "authors": "Li Lixin, Shimada Tomoo, Takahashi Hideyuki, Koumoto Yasuko, Shirakawa Makoto, Takagi Junpei, Zhao Xiaonan, Tu Baoyu, Jin Hongmin, Shen Zhe, Han Baoda, Jia Meihui, Kondo Maki, Nishimura Mikio, Hara-Nishimura Ikuko", "reference": { "type": "PubMed", "id": "24118572", "url": "https://pubmed.ncbi.nlm.nih.gov/24118572" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IP69-1", "protein_name": "Sec1 family domain-containing protein MIP3", "gene_name": "MIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIN7-1", "protein_name": "MAG2-interacting protein 2", "gene_name": "MIP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48626-1", "protein_name": "Centromere/kinetochore protein zw10 homolog", "gene_name": "ZW10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9STU3-1", "protein_name": "RINT1-like protein MAG2", "gene_name": "MAG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IP69", "url": "https://www.uniprot.org/uniprotkb/F4IP69" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24118572", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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acyltransferase 1", "gene_name": "WSD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5KS41-1", "protein_name": "Wax ester synthase/diacylglycerol acyltransferase 11", "gene_name": "WSD11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M3B1-1", "protein_name": "Wax ester synthase/diacylglycerol acyltransferase 6", "gene_name": "WSD6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M3B3-1", "protein_name": "Wax ester synthase/diacylglycerol acyltransferase 4", "gene_name": "WSD4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IU14", "url": "https://www.uniprot.org/uniprotkb/F4IU14" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18621978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"database": "UniProtKB", "id": "F4IU14", "url": "https://www.uniprot.org/uniprotkb/F4IU14" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.30729606", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"Identification and characterization of the Arabidopsis gene encoding the tetrapyrrole biosynthesis enzyme uroporphyrinogen III synthase.", "journal": "The Biochemical journal", "date": "2008-03-01", "authors": "Tan Fui-Ching, Cheng Qi, Saha Kaushik, Heinemann Ilka U, Jahn Martina, Jahn Dieter, Smith Alison G", "reference": { "type": "PubMed", "id": "18042043", "url": "https://pubmed.ncbi.nlm.nih.gov/18042043" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48721-1", "protein_name": "Uroporphyrinogen-III synthase, chloroplastic", "gene_name": "HEMD; UROS", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48721", "url": "https://www.uniprot.org/uniprotkb/O48721" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18042043", "abstract": "", "glycosylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNase MRP RNA and RNase P activity in plants are associated with a Pop1p containing complex.", "journal": "Nucleic acids research", "date": "2012-09", "authors": "Krehan Mario, Heubeck Christian, Menzel Nicolas, Seibel Peter, Sch\u00f6n Astrid", "reference": { "type": "PubMed", "id": 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U.S.A.", "date": "2000", "authors": "van der Biezen E A, Sun J, Coleman M J, Bibb M J, Jones J D", "reference": { "type": "PubMed", "id": "10725385", "url": "https://pubmed.ncbi.nlm.nih.gov/10725385" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JNB7-1", "protein_name": "Disease resistance protein RPP5", "gene_name": "RPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JHA2-1", "protein_name": "Putative GTP diphosphokinase RSH1, chloroplastic", "gene_name": "RSH1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JNB7", "url": "https://www.uniprot.org/uniprotkb/F4JNB7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10725385", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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RPP5 shares similarity to the toll and interleukin-1 receptors with N and L6.", "journal": "Plant Cell", "date": "1997", "authors": "Parker J E, Coleman M J, Szab\u00f2 V, Frost L N, Schmidt R, van der Biezen E A, Moores T, Dean C, Daniels M J, Jones J D", "reference": { "type": "PubMed", "id": "9212464", "url": "https://pubmed.ncbi.nlm.nih.gov/9212464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JNB7-1", "protein_name": "Disease resistance protein RPP5", "gene_name": "RPP5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JNB7", "url": "https://www.uniprot.org/uniprotkb/F4JNB7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9212464", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Cell Sci.", "date": "2011", "authors": "Macaisne N, Vignard J, Mercier R", "reference": { "type": "PubMed", "id": "21771883", "url": "https://pubmed.ncbi.nlm.nih.gov/21771883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JN26-1", "protein_name": "DNA mismatch repair protein MLH3", "gene_name": "MLH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KG50-1", "protein_name": "Protein SHORTAGE IN CHIASMATA 1", "gene_name": "SHOC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JEP5-1", "protein_name": "DNA mismatch repair protein MSH5", "gene_name": "MSH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IDW9-1", "protein_name": "Protein PARTING DANCERS", "gene_name": "PTD", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JN26", "url": "https://www.uniprot.org/uniprotkb/F4JN26" } ], "common_name": "Mouse-ear 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phylogenetic and expression analysis of sucrose phosphate synthase isozymes in plants.", "journal": "J. Plant Physiol.", "date": "2007", "authors": "Lutfiyya Linda L, Xu Nanfei, D'Ordine Robert L, Morrell James A, Miller Philip W, Duff Stephen M G", "reference": { "type": "PubMed", "id": "16876912", "url": "https://pubmed.ncbi.nlm.nih.gov/16876912" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JLK2-1", "protein_name": "Sucrose-phosphate synthase 4", "gene_name": "SPS4F; SPS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RY24-1", "protein_name": "Probable sucrose-phosphate synthase 3", "gene_name": "SPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BT0-1", "protein_name": "Sucrose-phosphate synthase 1", "gene_name": "SPS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FY54-1", "protein_name": "Probable sucrose-phosphate synthase 2", "gene_name": "SPS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JLK2", "url": "https://www.uniprot.org/uniprotkb/F4JLK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16876912", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Decrease in leaf sucrose synthesis leads to increased leaf starch turnover and decreased RuBP regeneration-limited photosynthesis but not Rubisco-limited photosynthesis in Arabidopsis null mutants of SPSA1.", "journal": "Plant Cell Environ.", "date": "2011", "authors": "Sun Jindong, Zhang Jisen, Larue Clayton T, Huber Steven C", "reference": { "type": "PubMed", "id": "21309792", "url": "https://pubmed.ncbi.nlm.nih.gov/21309792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JLK2-1", "protein_name": "Sucrose-phosphate synthase 4", "gene_name": "SPS4F; 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Biol. Chem.", "date": "2004", "authors": "Hesberg Christine, H\u00e4nsch Robert, Mendel Ralf R, Bittner Florian", "reference": { "type": "PubMed", "id": "14726515", "url": "https://pubmed.ncbi.nlm.nih.gov/14726515" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JLI5-1", "protein_name": "Xanthine dehydrogenase 2", "gene_name": "XDH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5X8-1", "protein_name": "Molybdenum cofactor sulfurase", "gene_name": "ABA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GUQ8-1", "protein_name": "Xanthine dehydrogenase 1", "gene_name": "XDH1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JLI5", "url": "https://www.uniprot.org/uniprotkb/F4JLI5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The RNAi-mediated silencing of xanthine dehydrogenase impairs growth and fertility and accelerates leaf senescence in transgenic Arabidopsis plants.", "journal": "Plant & cell physiology", "date": "2007-10", "authors": "Nakagawa Ayami, Sakamoto Saori, Takahashi Misa, Morikawa Hiromichi, Sakamoto Atsushi", "reference": { "type": "PubMed", "id": "17872919", "url": "https://pubmed.ncbi.nlm.nih.gov/17872919" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JLI5-1", "protein_name": "Xanthine dehydrogenase 2", "gene_name": "XDH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GUQ8-1", "protein_name": "Xanthine dehydrogenase 1", "gene_name": "XDH1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JLI5", "url": "https://www.uniprot.org/uniprotkb/F4JLI5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17872919", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Behav.", "date": "2010", "authors": "Thompson Elinor P, Davies Julia M, Glover Beverley J", "reference": { "type": "PubMed", "id": "20505354", "url": "https://pubmed.ncbi.nlm.nih.gov/20505354" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JTB3-1", "protein_name": "Protein DETOXIFICATION 35", "gene_name": "DTX35", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JTB3", "url": "https://www.uniprot.org/uniprotkb/F4JTB3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20505354", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The DYW Subgroup PPR Protein MEF35 Targets RNA Editing Sites in the Mitochondrial rpl16, nad4 and cob mRNAs in Arabidopsis thaliana.", "journal": "PloS one", "date": "2015", "authors": "Brehme Nadja, Bayer-Cs\u00e1sz\u00e1r Eszter, Glass Franziska, Takenaka Mizuki", "reference": { "type": "PubMed", "id": "26470017", "url": "https://pubmed.ncbi.nlm.nih.gov/26470017" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23266-1", "protein_name": "Pentatricopeptide repeat-containing protein At4g14050, 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Arabidopsis cyclase-associated protein 1 as the first nucleotide exchange factor for plant actin.", "journal": "Molecular biology of the cell", "date": "2007-08", "authors": "Chaudhry Faisal, Gu\u00e9rin Christophe, von Witsch Matthias, Blanchoin Laurent, Staiger Christopher J", "reference": { "type": "PubMed", "id": "17538023", "url": "https://pubmed.ncbi.nlm.nih.gov/17538023" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O65902-1", "protein_name": "Cyclase-associated protein 1", "gene_name": "CAP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39250-1", "protein_name": "Actin-depolymerizing factor 1", "gene_name": "ADF1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65902", 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key regulator of actin organisation and development.", "journal": "Journal of cell science", "date": "2007-08-01", "authors": "Deeks Michael J, Rodrigues Cec\u00edlia, Dimmock Simon, Ketelaar Tijs, Maciver Sutherland K, Malh\u00f3 Rui, Hussey Patrick J", "reference": { "type": "PubMed", "id": "17635992", "url": "https://pubmed.ncbi.nlm.nih.gov/17635992" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O65902-1", "protein_name": "Cyclase-associated protein 1", "gene_name": "CAP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65902", "url": "https://www.uniprot.org/uniprotkb/O65902" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17635992", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Rev. Plant Biol.", "date": "2004", "authors": "Rasmusson Allan G, Soole Kathleen L, Elthon Thomas E", "reference": { "type": "PubMed", "id": "15725055", "url": "https://pubmed.ncbi.nlm.nih.gov/15725055" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4JJJ3-1", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial", "gene_name": "NDB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80874-1", "protein_name": "Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial", "gene_name": "NDA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BV7-1", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial", "gene_name": "NDB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWA1-1", "protein_name": "Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial", "gene_name": "NDA1", "tax_name": "Mouse-ear cress" }, { 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Biol.", "date": "1990", "authors": "Chopra S, Dolferus R, Jacobs M", "reference": { "type": "PubMed", "id": "2103470", "url": "https://pubmed.ncbi.nlm.nih.gov/2103470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P22197-1", "protein_name": "Fructose-bisphosphate aldolase 7, cytosolic", "gene_name": "FBA7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P22197", "url": "https://www.uniprot.org/uniprotkb/P22197" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.2103470", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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"journal": "Mol. Plant", "date": "2015", "authors": "Kong Zhaosheng, Ioki Motohide, Braybrook Siobhan, Li Shundai, Ye Zheng-Hua, Julie Lee Yuh-Ru, Hotta Takashi, Chang Anny, Tian Juan, Wang Guangda, Liu Bo", "reference": { "type": "PubMed", "id": "25600279", "url": "https://pubmed.ncbi.nlm.nih.gov/25600279" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K0J3-1", "protein_name": "Kinesin-like protein KIN-4C", "gene_name": "KIN4C; MSL3.50", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94LW7-1", "protein_name": "Kinesin-like protein KIN-4B", "gene_name": "KICP-02; KIN4B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GS71-1", "protein_name": "Kinesin-like protein KIN-4A", "gene_name": "KIN4A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K0J3", "url": "https://www.uniprot.org/uniprotkb/F4K0J3" } ], "common_name": "Mouse-ear cress", 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"authors": "Meyer , Verdoucq , Vignols", "reference": { "type": "PubMed", "id": "10498962", "url": "https://pubmed.ncbi.nlm.nih.gov/10498962" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O64654-1", "protein_name": "Thioredoxin-like 1-1, chloroplastic", "gene_name": "ACHT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XFI1-1", "protein_name": "Thioredoxin-like 1-2, chloroplastic", "gene_name": "ACHT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEK4-1", "protein_name": "Thioredoxin-like 2-1, chloroplastic", "gene_name": "F20B18.270", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LDI5-1", "protein_name": "Thioredoxin-like protein CXXS1", "gene_name": "CXXS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XFH8-1", "protein_name": "Thioredoxin F1, chloroplastic", "gene_name": "F13E7.33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XFH9-1", "protein_name": "Thioredoxin 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the formation of branched short-chain fatty acid:CoAs for bitter acid biosynthesis in hop glandular trichomes.", "journal": "Molecular plant", "date": "2013-07", "authors": "Xu Haiyang, Zhang Fengxia, Liu Baoxiu, Huhman David V, Sumner Lloyd W, Dixon Richard A, Wang Guodong", "reference": { "type": "PubMed", "id": "23300257", "url": "https://pubmed.ncbi.nlm.nih.gov/23300257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HUK6-1", "protein_name": "Butanoate--CoA ligase AAE1", "gene_name": "AAE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEY5-1", "protein_name": "Isovalerate--CoA ligase AAE2", "gene_name": "AAE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HUK6", "url": "https://www.uniprot.org/uniprotkb/F4HUK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23300257", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AtCCMH, an essential component of the c-type cytochrome maturation pathway in Arabidopsis mitochondria, interacts with apocytochrome c.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2005", "authors": "Meyer Etienne H, Gieg\u00e9 Philippe, Gelhaye Eric, Rayapuram Naganand, Ahuja Umesh, Th\u00f6ny-Meyer Linda, Grienenberger Jean-Michel, Bonnard G\u00e9raldine", "reference": { "type": "PubMed", "id": "16236729", "url": "https://pubmed.ncbi.nlm.nih.gov/16236729" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23138-1", "protein_name": "Cytochrome c-1", "gene_name": "CYTC-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XI46-1", "protein_name": "Cytochrome c-type biogenesis CcmH-like mitochondrial protein", "gene_name": "CCMH", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23138", "url": "https://www.uniprot.org/uniprotkb/O23138" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16236729", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The three mitochondrial encoded CcmF proteins form a complex that interacts with CCMH and c-type apocytochromes in Arabidopsis.", "journal": "J. Biol. Chem.", "date": "2008", "authors": "Rayapuram Naganand, Hagenmuller J\u00e9r\u00e9mie, Grienenberger Jean Michel, Bonnard G\u00e9raldine, Gieg\u00e9 Philippe", "reference": { "type": "PubMed", "id": "18644794", "url": "https://pubmed.ncbi.nlm.nih.gov/18644794" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23138-1", "protein_name": "Cytochrome c-1", "gene_name": "CYTC-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XI46-1", "protein_name": "Cytochrome c-type biogenesis CcmH-like mitochondrial protein", "gene_name": "CCMH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93286-1", "protein_name": "Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein", "gene_name": "CCMFC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q33884-1", "protein_name": "Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2", "gene_name": "CCMFN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T6H8-1", "protein_name": "Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1", "gene_name": "CCB382; 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