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Biotechnol. Biochem.", "date": "2000", "authors": "Nishii A, Takemura M, Fujita H, Shikata M, Yokota A, Kohchi T", "reference": { "type": "PubMed", "id": "10945256", "url": "https://pubmed.ncbi.nlm.nih.gov/10945256" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LRH6-1", "protein_name": "GATA transcription factor 25", "gene_name": "GATA25; ZIM", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LRH6", "url": "https://www.uniprot.org/uniprotkb/Q9LRH6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10945256", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family.", "journal": "Journal of experimental botany", "date": "2004-03", "authors": "Shikata Masahito, Matsuda Yuko, Ando Kohei, Nishii Akiko, Takemura Miho, Yokota Akiho, Kohchi Takayuki", "reference": { "type": "PubMed", "id": "14966217", "url": "https://pubmed.ncbi.nlm.nih.gov/14966217" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LRH6-1", "protein_name": "GATA transcription 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tify family previously known as ZIM.", "journal": "Trends Plant Sci.", "date": "2007", "authors": "Vanholme Bartel, Grunewald Wim, Bateman Alex, Kohchi Takayuki, Gheysen Godelieve", "reference": { "type": "PubMed", "id": "17499004", "url": "https://pubmed.ncbi.nlm.nih.gov/17499004" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LRH6-1", "protein_name": "GATA transcription factor 25", "gene_name": "GATA25; ZIM", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; TIFY10A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1G0-1", "protein_name": "GATA transcription factor 28", "gene_name": "GATA28", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXL7-1", "protein_name": "GATA transcription factor 24", "gene_name": "GATA24; ZML1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64687-1", "protein_name": "Protein TIFY 5B", "gene_name": "TIFY 5B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZM9-1", "protein_name": "Protein TIFY 9", "gene_name": "JAZ10; TIFY9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDU5-1", "protein_name": "Protein TIFY 11A", "gene_name": "JAZ5; TIFY11A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9E3-1", "protein_name": "Protein TIFY 11B", "gene_name": "JAZ6; TIFY11B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7M2-1", "protein_name": "Protein TIFY 10B", "gene_name": "TIFY10B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBM2-1", "protein_name": "Protein TIFY 5A", "gene_name": "TIFY5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5K8-1", "protein_name": "Protein TIFY 3B", "gene_name": "TIFY3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q58G47-1", "protein_name": "Protein TIFY 6A", "gene_name": "JAZ4; TIFY6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M246-1", "protein_name": "Protein TIFY 3A", "gene_name": "JAZ11; TIFY3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84MB2-1", "protein_name": "Protein TIFY 8", "gene_name": "TIFY8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4J8-1", "protein_name": "Protein TIFY 7", "gene_name": "TIFY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI4-1", "protein_name": "Protein TIFY 6B", "gene_name": "JAZ3; TIFY6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LRH6", "url": "https://www.uniprot.org/uniprotkb/Q9LRH6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17499004", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of chloroplastic fructose 1,6-bisphosphate aldolases as lysine-methylated proteins in plants.", "journal": "The Journal of biological chemistry", "date": "2012-06-15", "authors": "Mininno Morgane, Brugi\u00e8re Sabine, Pautre Virginie, Gilgen Annabelle, Ma Sheng, Ferro Myriam, Tardif Marianne, Alban Claude, Ravanel St\u00e9phane", "reference": { "type": "PubMed", "id": "22547063", "url": "https://pubmed.ncbi.nlm.nih.gov/22547063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q944G9-1", "protein_name": "Fructose-bisphosphate aldolase 2, chloroplastic", "gene_name": "FBA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XI84-1", "protein_name": "[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic", "gene_name": "LSMT-L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZU52-1", "protein_name": "Fructose-bisphosphate aldolase 3, chloroplastic", "gene_name": "FBA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJU4-1", "protein_name": "Fructose-bisphosphate aldolase 1, chloroplastic", "gene_name": "FBA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944G9", "url": "https://www.uniprot.org/uniprotkb/Q944G9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 394, "end_pos": 394, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of methylation, but no effect on enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q944G9", "url": "https://www.uniprot.org/uniprotkb/Q944G9" }, { "database": "PubMed", "id": "22547063", "url": "https://pubmed.ncbi.nlm.nih.gov/22547063" } ], "uniprot_canonical_ac": "Q944G9-1" } ], "record_id": "pubmed.22547063", "abstract": "", "glycosylation": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of fructose 1,6-bisphosphate aldolase genes in Arabidopsis reveal a gene family with diverse responses to abiotic stresses.", "journal": "Gene", "date": "2012", "authors": "Lu Wei, Tang Xiaoli, Huo Yanqing, Xu Rui, Qi Shengdong, Huang Jinguang, Zheng Chengchao, Wu Chang-ai", "reference": { "type": "PubMed", "id": "22561114", "url": "https://pubmed.ncbi.nlm.nih.gov/22561114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q944G9-1", "protein_name": "Fructose-bisphosphate aldolase 2, chloroplastic", "gene_name": "FBA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LF98-1", "protein_name": "Fructose-bisphosphate aldolase 8, cytosolic", "gene_name": "FBA8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P22197-1", "protein_name": "Fructose-bisphosphate aldolase 7, cytosolic", "gene_name": "FBA7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65581-1", "protein_name": "Fructose-bisphosphate aldolase 5, cytosolic", "gene_name": "FBA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZU52-1", "protein_name": "Fructose-bisphosphate aldolase 3, chloroplastic", "gene_name": "FBA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJU4-1", "protein_name": "Fructose-bisphosphate aldolase 1, chloroplastic", "gene_name": "FBA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KGQ0-1", "protein_name": "Fructose-bisphosphate aldolase 4, cytosolic", "gene_name": "FBA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJQ9-1", "protein_name": "Fructose-bisphosphate aldolase 6, cytosolic", "gene_name": "FBA6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944G9", "url": "https://www.uniprot.org/uniprotkb/Q944G9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22561114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aux/IAA proteins are phosphorylated by phytochrome in vitro.", "journal": "Plant physiology", "date": "2000-12", "authors": "Col\u00f3n-Carmona A, Chen D L, Yeh K C, Abel S", "reference": { "type": "PubMed", "id": "11115889", "url": "https://pubmed.ncbi.nlm.nih.gov/11115889" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q38827-1", "protein_name": "Auxin-responsive protein IAA9", "gene_name": "IAA9", "tax_name": "Mouse-ear cress" }, { 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Opin. Plant Biol.", "date": "1998", "authors": "Oppenheimer D G", "reference": { "type": "PubMed", "id": "10066632", "url": "https://pubmed.ncbi.nlm.nih.gov/10066632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FHN8-1", "protein_name": "Kinesin-like protein KIN-14E", "gene_name": "KIN14E; ZWI", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHN8", "url": "https://www.uniprot.org/uniprotkb/Q9FHN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10066632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interaction of a kinesin-like protein with calmodulin isoforms from Arabidopsis.", "journal": "J. Biol. Chem.", "date": "1999", "authors": "Reddy V S, Safadi F, Zielinski R E, Reddy A S", "reference": { "type": "PubMed", "id": "10531384", "url": "https://pubmed.ncbi.nlm.nih.gov/10531384" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FHN8-1", "protein_name": "Kinesin-like protein KIN-14E", "gene_name": "KIN14E; ZWI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DH97-1", "protein_name": "Calmodulin-2", "gene_name": "CAM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DH96-1", "protein_name": "Calmodulin-4", "gene_name": "CAM4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q03509-1", "protein_name": "Calmodulin-6", "gene_name": "CAM6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHN8", "url": "https://www.uniprot.org/uniprotkb/Q9FHN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10531384", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bundling of microtubules by motor and tail domains of a kinesin-like calmodulin-binding protein from Arabidopsis: regulation by Ca(2+)/Calmodulin.", "journal": "Biochemical and biophysical research communications", "date": "2000-01-07", "authors": "Kao Y L, Deavours B E, Phelps K K, Walker R A, Reddy A S", "reference": { "type": "PubMed", "id": "10623599", "url": "https://pubmed.ncbi.nlm.nih.gov/10623599" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FHN8-1", "protein_name": "Kinesin-like protein KIN-14E", "gene_name": "KIN14E; 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Biol. Chem.", "date": "2000", "authors": "Day I S, Miller C, Golovkin M, Reddy A S", "reference": { "type": "PubMed", "id": "10788494", "url": "https://pubmed.ncbi.nlm.nih.gov/10788494" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FHN8-1", "protein_name": "Kinesin-like protein KIN-14E", "gene_name": "KIN14E; ZWI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFA2-1", "protein_name": "Serine/threonine-protein kinase KIPK1", "gene_name": "KIPK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHN8", "url": "https://www.uniprot.org/uniprotkb/Q9FHN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10788494", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cell morphogenesis gene ANGUSTIFOLIA encodes a CtBP/BARS-like protein and is involved in the control of the microtubule cytoskeleton.", "journal": "EMBO J.", "date": "2002", "authors": "Folkers U, Kirik V, Sch\u00f6binger U, Falk S, Krishnakumar S, Pollock M A, Oppenheimer D G, Day I, Reddy A S M, J\u00fcrgens G, H\u00fclskamp M, Reddy A R", "reference": { "type": "PubMed", "id": "11889034", "url": "https://pubmed.ncbi.nlm.nih.gov/11889034" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FHN8-1", "protein_name": "Kinesin-like protein KIN-14E", "gene_name": "KIN14E; 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molecular biology", "date": "2019-02", "authors": "Lai Yan, Cuzick Alayne, Lu Xueqing M, Wang Jianqiang, Katiyar Neerja, Tsuchiya Tokuji, Le Roch Karine, McDowell John M, Holub Eric, Eulgem Thomas", "reference": { "type": "PubMed", "id": "30407670", "url": "https://pubmed.ncbi.nlm.nih.gov/30407670" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K3G5-1", "protein_name": "Protein ENHANCED DOWNY MILDEW 2", "gene_name": "EDM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W3K0-1", "protein_name": "Protein RECOGNITION OF PERONOSPORA PARASITICA 7", "gene_name": "RPP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNE8-1", "protein_name": "ASI1-immunoprecipitated protein 1", "gene_name": "AIPP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K3G5", "url": "https://www.uniprot.org/uniprotkb/F4K3G5" } ], "common_name": 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U.S.A.", "date": "2009", "authors": "Rawat Reetika, Schwartz Jacob, Jones Matthew A, Sairanen Ilkka, Cheng Youfa, Andersson Carol R, Zhao Yunde, Ljung Karin, Harmer Stacey L", "reference": { "type": "PubMed", "id": "19805390", "url": "https://pubmed.ncbi.nlm.nih.gov/19805390" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K5X6-1", "protein_name": "Protein REVEILLE 2", "gene_name": "RVE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVU0-1", "protein_name": "Probable indole-3-pyruvate monooxygenase YUCCA8", "gene_name": "YUC8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H0W3-1", "protein_name": "Protein REVEILLE 6", "gene_name": "RVE6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J2J6-1", "protein_name": "Protein REVEILLE 7-like", "gene_name": "RVE7L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R0H0-1", "protein_name": "Protein REVEILLE 3", "gene_name": "ASG4; RVE3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0SVG5-1", "protein_name": "Protein REVEILLE 5", "gene_name": "RVE5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWU3-1", "protein_name": "Protein REVEILLE 8", "gene_name": "RVE8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R0G4-1", "protein_name": "Protein REVEILLE 4", "gene_name": "LCL1; RVE4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B3H5A8-1", "protein_name": "Protein REVEILLE 7", "gene_name": "RVE7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KGY6-1", "protein_name": "Protein REVEILLE 1", "gene_name": "RVE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K5X6", "url": "https://www.uniprot.org/uniprotkb/F4K5X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19805390", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes.", "journal": "Biol. Direct", "date": "2012", "authors": "Filichkin Sergei A, Mockler Todd C", "reference": { "type": "PubMed", "id": "22747664", "url": "https://pubmed.ncbi.nlm.nih.gov/22747664" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K5X6-1", "protein_name": "Protein REVEILLE 2", "gene_name": "RVE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K5X6", "url": "https://www.uniprot.org/uniprotkb/F4K5X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22747664", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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[] } ] }, { "title": "RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana.", "journal": "Cell research", "date": "2016-06", "authors": "Ou Yang, Lu Xiaoting, Zi Quaner, Xun Qingqing, Zhang Jingjie, Wu Yujun, Shi Hongyong, Wei Zhuoyun, Zhao Baolin, Zhang Xiaoyue, He Kai, Gou Xiaoping, Li Chuanyou, Li Jia", "reference": { "type": "PubMed", "id": "27229312", "url": "https://pubmed.ncbi.nlm.nih.gov/27229312" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K6B8-1", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4", "gene_name": "RGI4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3E880-1", "protein_name": "Protein GOLVEN 11", "gene_name": "GLV11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LHP4-1", "protein_name": "LRR receptor-like serine/threonine-protein kinase RGI1", "gene_name": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis MAKR5 is a positive effector of BAM3-dependent CLE45 signaling.", "journal": "EMBO reports", "date": "2016-08", "authors": "Kang Yeon Hee, Hardtke Christian S", "reference": { "type": "PubMed", "id": "27354416", "url": "https://pubmed.ncbi.nlm.nih.gov/27354416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K6B8-1", 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[] } ] }, { "title": "Transcriptional regulator AtET2 is required for the induction of dormancy during late seed development.", "journal": "Journal of plant physiology", "date": "2012-03-15", "authors": "Ivanov Rumen, Tiedemann Jens, Czihal Andreas, Baumlein Helmut", "reference": { "type": "PubMed", "id": "22226340", "url": "https://pubmed.ncbi.nlm.nih.gov/22226340" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4K933-1", "protein_name": "Protein EFFECTOR OF TRANSCRIPTION 2", "gene_name": "ET2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JU69-1", "protein_name": "Protein EFFECTOR OF TRANSCRIPTION 1", "gene_name": "ET1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K933", "url": "https://www.uniprot.org/uniprotkb/F4K933" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana 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"authors": "Zhang Yu, Feng Suhua, Chen Fangfang, Chen Haodong, Wang Jia, McCall Chad, Xiong Yue, Deng Xing Wang", "reference": { "type": "PubMed", "id": "18552200", "url": "https://pubmed.ncbi.nlm.nih.gov/18552200" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KB17-1", "protein_name": "Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3", "gene_name": "KTN80.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUN8-1", "protein_name": "Protein HEAT STRESS TOLERANT DWD 1", "gene_name": "HTD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H0T9-1", "protein_name": "Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4", "gene_name": "KTN80.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGH4-1", "protein_name": "Cullin-4", "gene_name": "CUL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BQ3-1", "protein_name": "Protein ALTERED SEED GERMINATION 2", "gene_name": "ASG2", 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two thymidine kinases and one multisubstrate deoxyribonucleoside kinase salvage DNA precursors in Arabidopsis thaliana.", "journal": "The FEBS journal", "date": "2012-10", "authors": "Clausen Anders R, Girandon Lenart, Ali Ashfaq, Knecht Wolfgang, Rozpedowska Elzbieta, Sandrini Michael P B, Andreasson Erik, Munch-Petersen Birgitte, Pi\u0161kur Jure", "reference": { "type": "PubMed", "id": "22897443", "url": "https://pubmed.ncbi.nlm.nih.gov/22897443" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KBF5-1", "protein_name": "Thymidine kinase b", "gene_name": "TK1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S750-1", "protein_name": "Thymidine kinase a", "gene_name": "TK1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4KBF5", "url": "https://www.uniprot.org/uniprotkb/F4KBF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22897443", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thymidine kinase 1 regulatory fine-tuning through tetramer formation.", "journal": "FEBS J.", "date": "2013", "authors": "Mutahir Z, Clausen AR, Andersson KM, Wisen SM, Munch-Petersen B, Piskur J", "reference": { "type": "PubMed", "id": "23351158", "url": "https://pubmed.ncbi.nlm.nih.gov/23351158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KBF5-1", "protein_name": "Thymidine kinase b", "gene_name": "TK1B", 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Natl. Acad. Sci. U.S.A.", "date": "1999", "authors": "Ogas J, Kaufmann S, Henderson J, Somerville C", "reference": { "type": "PubMed", "id": "10570159", "url": "https://pubmed.ncbi.nlm.nih.gov/10570159" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KBP5-1", "protein_name": "Protein CHROMATIN REMODELING 4", "gene_name": "CHR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S775-1", "protein_name": "CHD3-type chromatin-remodeling factor PICKLE", "gene_name": "PKL", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4KBP5", "url": "https://www.uniprot.org/uniprotkb/F4KBP5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10570159", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An Arabidopsis Fip1 homolog interacts with RNA and provides conceptual links with a number of other polyadenylation factor subunits.", "journal": "J. Biol. Chem.", "date": "2006", "authors": "Forbes Kevin P, Addepalli Balasubrahmanyam, Hunt Arthur G", "reference": { "type": "PubMed", "id": "16282318", "url": "https://pubmed.ncbi.nlm.nih.gov/16282318" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93VI4-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GUP1-1", "protein_name": "Cleavage stimulation factor subunit 77", "gene_name": "CSTF77", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VYW1-1", "protein_name": "Nuclear poly(A) polymerase 4", "gene_name": "PAPS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AF0-1", "protein_name": "Pre-mRNA cleavage factor Im 25 kDa subunit 1", "gene_name": "CFIS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L4J2-1", "protein_name": "Cleavage stimulation factor subunit 50", "gene_name": "CSTF50", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JC20-1", "protein_name": "FIP1[III]-like protein", "gene_name": "FIPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A9LNK9-1", "protein_name": "30-kDa cleavage and polyadenylation specificity factor 30", "gene_name": "CPSF30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KDH9-1", "protein_name": "FIP1[V]-like protein", "gene_name": "FIP1[V]; FIPS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9G6-1", "protein_name": "Cleavage stimulating factor 64", "gene_name": "CSTF64", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VI4", "url": "https://www.uniprot.org/uniprotkb/Q93VI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16282318", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Processing peptidases in mitochondria and chloroplasts.", "journal": "Biochim. Biophys. Acta", "date": "2013", "authors": "Teixeira Pedro Filipe, Glaser Elzbieta", "reference": { "type": "PubMed", "id": "22495024", "url": "https://pubmed.ncbi.nlm.nih.gov/22495024" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KDA5-1", "protein_name": "Mitochondrial intermediate peptidase, mitochondrial", "gene_name": "OCT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIH8-1", "protein_name": "Stromal processing peptidase, chloroplastic", "gene_name": "SPP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HZG9-1", "protein_name": "Intermediate cleaving peptidase 55, mitochondrial", "gene_name": "ICP55", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4KDA5", "url": "https://www.uniprot.org/uniprotkb/F4KDA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22495024", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], 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"2009-09", "authors": "Jiang Hua, Wang Fen-Fei, Wu Yu-Ting, Zhou Xi, Huang Xue-Yong, Zhu Jun, Gao Ju-Fang, Dong Rui-Bin, Cao Kai-Ming, Yang Zhong-Nan", "reference": { "type": "PubMed", "id": "19500302", "url": "https://pubmed.ncbi.nlm.nih.gov/19500302" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KDF5-1", "protein_name": "Protein MULTIPOLAR SPINDLE 1", "gene_name": "MPS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4KDF5", "url": "https://www.uniprot.org/uniprotkb/F4KDF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19500302", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Hara-Nishimura Ikuko, Nishimura Mikio", "reference": { "type": "PubMed", "id": "23166355", "url": "https://pubmed.ncbi.nlm.nih.gov/23166355" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KFS7-1", "protein_name": "Membrane protein of ER body 2", "gene_name": "MEB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPT3-1", "protein_name": "Membrane protein of ER body-like protein", "gene_name": "MEBL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4P8-1", "protein_name": "Membrane protein of ER body 1", "gene_name": "MEB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSB4-1", "protein_name": "TSA1-like protein", "gene_name": "NAI2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4KFS7", "url": "https://www.uniprot.org/uniprotkb/F4KFS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 213, "end_pos": 213, "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of hydrolase activity.", "evidence": [ { "database": "UniProtKB", "id": "F4KFT7", "url": "https://www.uniprot.org/uniprotkb/F4KFT7" }, { "database": "PubMed", "id": "27677881", "url": "https://pubmed.ncbi.nlm.nih.gov/27677881" } ], "uniprot_canonical_ac": "F4KFT7-1" }, { "start_pos": 317, "end_pos": 317, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of phosphatase activity.", "evidence": [ { "database": "UniProtKB", "id": "F4KFT7", "url": "https://www.uniprot.org/uniprotkb/F4KFT7" }, { "database": "PubMed", "id": "27677881", "url": "https://pubmed.ncbi.nlm.nih.gov/27677881" } ], "uniprot_canonical_ac": "F4KFT7-1" }, { "start_pos": 47, "end_pos": 47, "sequence_org": "M", "sequence_mut": "L", "comment": "No effect on the mitochondrial 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of enzymes for adenosine-to-inosine editing and discovery of cytidine-to-uridine editing in nucleus-encoded transfer RNAs of Arabidopsis.", "journal": "Plant physiology", "date": "2014-12", "authors": "Zhou Wenbin, Karcher Daniel, Bock Ralph", "reference": { "type": "PubMed", "id": "25315605", "url": "https://pubmed.ncbi.nlm.nih.gov/25315605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4KH86-1", "protein_name": "tRNA-specific adenosine deaminase TAD3", "gene_name": "EMB2820; TAD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BU8-1", "protein_name": "Guanosine deaminase", "gene_name": "GSDA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6IDB6-1", "protein_name": "tRNA-specific adenosine deaminase TAD2", "gene_name": "EMB2191; TAD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HU58-1", "protein_name": "tRNA-specific adenosine 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Increased sensitivity to ABA and loss of phosphatase activity; when associated with T-185, or Y-259, or C-304, or D-307, or F-314, or L-328, or N-316. 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Dolores, Gonz\u00e1lez-Garc\u00eda Mary Paz, Sanz Luis, Nicol\u00e1s Gregorio, Lorenzo Oscar", "reference": { "type": "PubMed", "id": "19889877", "url": "https://pubmed.ncbi.nlm.nih.gov/19889877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FGM1-1", "protein_name": "Abscisic acid receptor PYL8", "gene_name": "PYL8; RCAR3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGM1", "url": "https://www.uniprot.org/uniprotkb/Q9FGM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19889877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The molecular basis of ABA-independent inhibition of PP2Cs by a subclass of PYL proteins.", "journal": "Molecular cell", "date": "2011-06-10", "authors": "Hao Qi, Yin Ping, Li Wenqi, Wang Li, Yan Chuangye, Lin Zhaohu, Wu Jim Zhen, Wang Jiawei, Yan S Frank, Yan Nieng", "reference": { "type": "PubMed", "id": "21658606", "url": "https://pubmed.ncbi.nlm.nih.gov/21658606" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FGM1-1", "protein_name": "Abscisic acid receptor PYL8", 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"Increased constitutive inhibition of PP2C phosphatase.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "21658606", "url": "https://pubmed.ncbi.nlm.nih.gov/21658606" } ], "uniprot_canonical_ac": "O80992-1" }, { "start_pos": 88, "end_pos": 88, "sequence_org": "I", "sequence_mut": "K", "comment": "Monomer due to impaired homodimerization. Increased ABA-binding affinity and increased constitutive inhibition of PP2C phosphatase.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "21658606", "url": "https://pubmed.ncbi.nlm.nih.gov/21658606" } ], "uniprot_canonical_ac": "O80992-1" } ], "record_id": "pubmed.21658606", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional roles of the protein phosphatase 2C, AtAIP1, in abscisic acid signaling and sugar tolerance in Arabidopsis.", "journal": "Plant Sci.", "date": "2012", "authors": "Lim Chae Woo, Kim Jung-Hyun, Baek Woonhee, Kim Beom Seok, Lee Sung Chul", "reference": { "type": "PubMed", "id": "22404835", "url": "https://pubmed.ncbi.nlm.nih.gov/22404835" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FGM1-1", "protein_name": "Abscisic acid receptor PYL8", "gene_name": "PYL8; RCAR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNW3-1", "protein_name": "Protein phosphatase 2C 3", "gene_name": "AIP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGM1", "url": "https://www.uniprot.org/uniprotkb/Q9FGM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22404835", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural insights into the abscisic acid stereospecificity by the ABA receptors PYR/PYL/RCAR.", "journal": "PloS one", "date": "2013", "authors": "Zhang Xingliang, Jiang Lun, Wang Guoqiang, Yu Lin, Zhang Qi, Xin Qi, Wu Wei, Gong Zhizhong, Chen Zhongzhou", "reference": { "type": "PubMed", "id": "23844015", "url": "https://pubmed.ncbi.nlm.nih.gov/23844015" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FGM1-1", "protein_name": "Abscisic acid receptor PYL8", "gene_name": "PYL8; RCAR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49686-1", "protein_name": "Abscisic acid receptor PYR1", "gene_name": "PYR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80920-1", "protein_name": "Abscisic acid receptor PYL4", "gene_name": "PYL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80992-1", "protein_name": "Abscisic acid receptor PYL2", "gene_name": "PYL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84MC7-1", "protein_name": "Abscisic acid receptor PYL9", "gene_name": "PYL9", "tax_name": 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"title": "Autophagy negatively regulates cell death by controlling NPR1-dependent salicylic acid signaling during senescence and the innate immune response in Arabidopsis.", "journal": "The Plant cell", "date": "2009-09", "authors": "Yoshimoto Kohki, Jikumaru Yusuke, Kamiya Yuji, Kusano Miyako, Consonni Chiara, Panstruga Ralph, Ohsumi Yoshinori, Shirasu Ken", "reference": { "type": "PubMed", "id": "19773385", "url": "https://pubmed.ncbi.nlm.nih.gov/19773385" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8S296-1", "protein_name": "Autophagy-related protein 2", "gene_name": "ATG2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFI2-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F8S296", "url": "https://www.uniprot.org/uniprotkb/F8S296" } ], "common_name": "Mouse-ear cress", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2.", "journal": "Science", "date": "2017", "authors": "Aigner H, Wilson R H, Bracher A, Calisse L, Bhat J Y, Hartl F U, Hayer-Hartl M", "reference": { "type": "PubMed", "id": "29217567", "url": "https://pubmed.ncbi.nlm.nih.gov/29217567" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O03042-1", "protein_name": "Ribulose bisphosphate carboxylase large chain", "gene_name": "rbcL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SN73-1", "protein_name": "Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic", "gene_name": "BSD2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O03042", "url": "https://www.uniprot.org/uniprotkb/O03042" } ], "common_name": "Mouse-ear cress", 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"Evidence for transcriptional regulation of plastid photosynthesis genes in Arabidopsis thaliana roots.", "journal": "Plant Physiol.", "date": "1997", "authors": "Isono K, Niwa Y, Satoh K, Kobayashi H", "reference": { "type": "PubMed", "id": "9193094", "url": "https://pubmed.ncbi.nlm.nih.gov/9193094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O03042-1", "protein_name": "Ribulose bisphosphate carboxylase large chain", "gene_name": "rbcL", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O03042", "url": "https://www.uniprot.org/uniprotkb/O03042" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9193094", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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