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Genet.", "date": "2000", "authors": "Engert JC, Berube P, Mercier J, Dore C, Lepage P, Ge B, Bouchard JP, Mathieu J, Melancon SB, Schalling M, Lander ES, Morgan K, Hudson TJ, Richter A", "reference": { "type": "PubMed", "id": "10655055", "url": "https://pubmed.ncbi.nlm.nih.gov/10655055" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JLC8-1", "protein_name": "Sacsin", "gene_name": "Sacs", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZJ4-1", "protein_name": "Sacsin", "gene_name": "SACS", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JLC8", "url": "https://www.uniprot.org/uniprotkb/Q9JLC8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10655055", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The ataxia protein sacsin is a functional co-chaperone that protects against polyglutamine-expanded ataxin-1.", "journal": "Hum. 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Genet.", "date": "2009", "authors": "Parfitt DA, Michael GJ, Vermeulen EG, Prodromou NV, Webb TR, Gallo JM, Cheetham ME, Nicoll WS, Blatch GL, Chapple JP", "reference": { "type": "PubMed", "id": "19208651", "url": "https://pubmed.ncbi.nlm.nih.gov/19208651" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JLC8-1", "protein_name": "Sacsin", "gene_name": "Sacs", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZJ4-1", "protein_name": "Sacsin", "gene_name": "SACS", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JLC8", "url": "https://www.uniprot.org/uniprotkb/Q9JLC8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19208651", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Physiol.", "date": "2007", "authors": "Chen Li-Ming, Choi Inyeong, Haddad Gabriel G, Boron Walter F", "reference": { "type": "PubMed", "id": "17928512", "url": "https://pubmed.ncbi.nlm.nih.gov/17928512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BTY2-1", "protein_name": "Sodium bicarbonate cotransporter 3", "gene_name": "Slc4a7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5DTL9-1", "protein_name": "Sodium-driven chloride bicarbonate exchanger", "gene_name": "Slc4a10", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BTY2", "url": "https://www.uniprot.org/uniprotkb/Q8BTY2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17928512", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Society and the Korean Society of Pharmacology", "date": "2016", "authors": "Park PW, Ahn JY, Yang D", "reference": { "type": "PubMed", "id": "27382360", "url": "https://pubmed.ncbi.nlm.nih.gov/27382360" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q68FL4-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 2", "gene_name": "Ahcyl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88343-1", "protein_name": "Electrogenic sodium bicarbonate cotransporter 1", "gene_name": "Slc4a4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q68FL4", "url": "https://www.uniprot.org/uniprotkb/Q68FL4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 151, "end_pos": 151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": 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Med.", "date": "2011", "authors": "Bertossi A, Aichinger M, Sansonetti P, Lech M, Neff F, Pal M, Wunderlich FT, Anders HJ, Klein L, Schmidt-Supprian M", "reference": { "type": "PubMed", "id": "21844204", "url": "https://pubmed.ncbi.nlm.nih.gov/21844204" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VGL6-1", "protein_name": "Roquin-1", "gene_name": "Rc3h1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21844204", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Roquin-2 shares functions with its paralog Roquin-1 in the repression of mRNAs controlling T follicular helper cells and systemic inflammation.", "journal": "Immunity", "date": "2013", "authors": "Pratama A, Ramiscal RR, Silva DG, Das SK, Athanasopoulos V, Fitch J, Botelho NK, Chang PP, Hu X, Hogan JJ, Mana P, Bernal D, Korner H, Yu D, Goodnow CC, Cook MC, Vinuesa CG", "reference": { "type": "PubMed", "id": "23583642", "url": "https://pubmed.ncbi.nlm.nih.gov/23583642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VGL6-1", "protein_name": "Roquin-1", "gene_name": "Rc3h1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0C090-1", "protein_name": "Roquin-2", "gene_name": "Rc3h2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23583642", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Roquin paralogs 1 and 2 redundantly repress the Icos and Ox40 costimulator mRNAs and control follicular helper T cell differentiation.", "journal": "Immunity", "date": "2013", "authors": "Vogel KU, Edelmann SL, Jeltsch KM, Bertossi A, Heger K, Heinz GA, Zoller J, Warth SC, Hoefig KP, Lohs C, Neff F, Kremmer E, Schick J, Repsilber D, Geerlof A, Blum H, Wurst W, Heikenwalder M, Schmidt-Supprian M, Heissmeyer V", "reference": { "type": "PubMed", "id": "23583643", "url": "https://pubmed.ncbi.nlm.nih.gov/23583643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VGL6-1", "protein_name": "Roquin-1", "gene_name": "Rc3h1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UJB9-1", "protein_name": "Enhancer of mRNA-decapping protein 4", "gene_name": "Edc4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0C090-1", "protein_name": "Roquin-2", "gene_name": "Rc3h2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23583643", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs.", "journal": "Cell", "date": "2013", "authors": "Leppek K, Schott J, Reitter S, Poetz F, Hammond MC, Stoecklin G", "reference": { "type": "PubMed", "id": "23663784", "url": "https://pubmed.ncbi.nlm.nih.gov/23663784" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VGL6-1", "protein_name": "Roquin-1", "gene_name": "Rc3h1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0C090-1", "protein_name": "Roquin-2", "gene_name": "Rc3h2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 419, "end_pos": 419, "sequence_org": "C", "sequence_mut": "R", "comment": "No effect on RNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "23663784", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation.", "journal": "Nature structural & molecular biology", "date": "2014", "authors": "Schlundt A, Heinz GA, Janowski R, Geerlof A, Stehle R, Heissmeyer V, Niessing D, Sattler M", "reference": { "type": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VGL6-1", "protein_name": "Roquin-1", "gene_name": "Rc3h1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 188, "end_pos": 188, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on CDERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 219, "end_pos": 219, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on CDERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 220, "end_pos": 220, "sequence_org": "K", "sequence_mut": "A", "comment": "Strongly decreases CDE and ADERNA-binding. Increases target-mRNA expression. Increases ICOS surface expression; when associated with A-239 and A-260.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "25282160", "url": "https://pubmed.ncbi.nlm.nih.gov/25282160" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 229, "end_pos": 229, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on CDERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 233, "end_pos": 233, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on CDERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 238, "end_pos": 238, "sequence_org": "S", "sequence_mut": "A", "comment": "Decreases CDERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 239, "end_pos": 239, "sequence_org": "K", "sequence_mut": "A", "comment": "Strongly decreases CDE and ADERNA-binding. Increases target-mRNA expression. Abolishes CDERNA-binding and highly increases target-mRNA expression; when associated with A-260. Increases target-mRNA expression. Increases ICOS surface expression; when associated with A-220 and A-260.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "25282160", "url": "https://pubmed.ncbi.nlm.nih.gov/25282160" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 250, "end_pos": 250, "sequence_org": "Y", "sequence_mut": "A", "comment": "Decreases CDERNA-binding. Increases target-mRNA expression.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 251, "end_pos": 251, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on CDERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 253, "end_pos": 253, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases CDE and ADERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 259, "end_pos": 259, "sequence_org": "K", "sequence_mut": "A", "comment": "Strongly decreases CDE and ADERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 260, "end_pos": 260, "sequence_org": "R", "sequence_mut": "A", "comment": "Strongly decreases CDE and ADERNA-binding. Increases target-mRNA expression. Abolishes CDERNA-binding and highly increases target-mRNA expression; when associated with A-239. Increases target-mRNA expression. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40.", "journal": "Nature communications", "date": "2016", "authors": 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Increases target-mRNA expression.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 253, "end_pos": 253, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases CDE and ADERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 259, "end_pos": 259, "sequence_org": "K", "sequence_mut": "A", "comment": "Strongly decreases CDE and ADERNA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" }, { "database": "PubMed", "id": "27010430", "url": "https://pubmed.ncbi.nlm.nih.gov/27010430" }, { "database": "PubMed", "id": "25026077", "url": "https://pubmed.ncbi.nlm.nih.gov/25026077" } ], "uniprot_canonical_ac": "Q4VGL6-1" }, { "start_pos": 260, "end_pos": 260, "sequence_org": "R", "sequence_mut": "A", "comment": "Strongly decreases CDE and ADERNA-binding. 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A human immune dysregulation syndrome characterized by severe hyperinflammation with a homozygous nonsense Roquin-1 mutation.", "journal": "Nature communications", "date": "2019", "authors": "Tavernier SJ, Athanasopoulos V, Verloo P, Behrens G, Staal J, Bogaert DJ, Naesens L, De Bruyne M, Van Gassen S, Parthoens E, Ellyard J, Cappello J, Morris LX, Van Gorp H, Van Isterdael G, Saeys Y, Lamkanfi M, Schelstraete P, Dehoorne J, Bordon V, Van Coster R, Lambrecht BN, Menten B, Beyaert R, Vinuesa CG, Heissmeyer V, Dullaers M, Haerynck F", "reference": { "type": "PubMed", "id": "31636267", "url": "https://pubmed.ncbi.nlm.nih.gov/31636267" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VGL6-1", "protein_name": "Roquin-1", "gene_name": "Rc3h1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TC82-1", "protein_name": "Roquin-1", "gene_name": "RC3H1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 199, "end_pos": 199, 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Jin G, Zhao X, Xu J, Zhang G, Ma Y, Yin N, Peng M", "reference": { "type": "PubMed", "id": "34879274", "url": "https://pubmed.ncbi.nlm.nih.gov/34879274" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VGL6-1", "protein_name": "Roquin-1", "gene_name": "Rc3h1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4VGL6", "url": "https://www.uniprot.org/uniprotkb/Q4VGL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.34879274", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 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Genet.", "date": "1990", "authors": "Boer P H, Potten H, Adra C N, Jardine K, Mullhofer G, McBurney M W", "reference": { "type": "PubMed", "id": "1975492", "url": "https://pubmed.ncbi.nlm.nih.gov/1975492" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09411-1", "protein_name": "Phosphoglycerate kinase 1", "gene_name": "Pgk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P09411", "url": "https://www.uniprot.org/uniprotkb/P09411" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1975492", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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conservation of the substrate-binding cleft of phosphoglycerate kinases.", "journal": "FEBS Lett.", "date": "1986", "authors": "Mori N, Singer-Sam J, Riggs A D", "reference": { "type": "PubMed", "id": "3525226", "url": "https://pubmed.ncbi.nlm.nih.gov/3525226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09411-1", "protein_name": "Phosphoglycerate kinase 1", "gene_name": "Pgk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P09411", "url": "https://www.uniprot.org/uniprotkb/P09411" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.3525226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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"authors": "Fu C, Li Q, Zou J, Xing C, Luo M, Yin B, Chu J, Yu J, Liu X, Wang HY, Wang RF", "reference": { "type": "PubMed", "id": "31393857", "url": "https://pubmed.ncbi.nlm.nih.gov/31393857" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P70271-1", "protein_name": "PDZ and LIM domain protein 4", "gene_name": "Pdlim4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.31393857", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[PDCD4 knockdown ameliorates lipopolysaccharide-induced endothelial cell damage by improving mitochondrial dynamics].", "journal": "Nan fang yi ke da xue xue bao = Journal of Southern Medical University", "date": "2024-01-20", "authors": "Yu J, Li R, Xia T, Wang J, Jin J, Yuan M, Li M", "reference": { "type": "PubMed", "id": "38293973", "url": "https://pubmed.ncbi.nlm.nih.gov/38293973" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61823-1", "protein_name": "Programmed cell death protein 4", "gene_name": "Pdcd4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61823", "url": "https://www.uniprot.org/uniprotkb/Q61823" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38293973", "abstract": "", 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Liu Minghao, Fang Liang, Gao Fei, Qin Yingying, Ding Lingling", "reference": { "type": "PubMed", "id": "38324980", "url": "https://pubmed.ncbi.nlm.nih.gov/38324980" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61823-1", "protein_name": "Programmed cell death protein 4", "gene_name": "Pdcd4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61823", "url": "https://www.uniprot.org/uniprotkb/Q61823" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38324980", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Commun.", "date": "1996", "authors": "Onishi Y, Kizaki H", "reference": { "type": "PubMed", "id": "8912629", "url": "https://pubmed.ncbi.nlm.nih.gov/8912629" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61823-1", "protein_name": "Programmed cell death protein 4", "gene_name": "Pdcd4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49312-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61823", "url": "https://www.uniprot.org/uniprotkb/Q61823" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8912629", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 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Cell. 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Guo M, Wang Q, Wang Q, Zuo S, Zhang X, Tong H, Chen J, Wang H, Chen X, Guo J, Su X, Liang H, Zhou H, Li JZ", "reference": { "type": "PubMed", "id": "32103509", "url": "https://pubmed.ncbi.nlm.nih.gov/32103509" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2AJ88-1", "protein_name": "Patatin-like phospholipase domain-containing protein 7", "gene_name": "Pnpla7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZV29-1", "protein_name": "Patatin-like phospholipase domain-containing protein 7", "gene_name": "PNPLA7", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2AJ88", "url": "https://www.uniprot.org/uniprotkb/A2AJ88" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32103509", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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