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for Cancer Research", "date": "2006-11-15", "authors": "Ura Katsuaki, Obama Kazutaka, Satoh Seiji, Sakai Yoshiharu, Nakamura Yusuke, Furukawa Yoichi", "reference": { "type": "PubMed", "id": "17121879", "url": "https://pubmed.ncbi.nlm.nih.gov/17121879" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N9B8-1", "protein_name": "Ras-GEF domain-containing family member 1A", "gene_name": "RASGEF1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N9B8", "url": "https://www.uniprot.org/uniprotkb/Q8N9B8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17121879", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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J.", "date": "2002", "authors": "Geserick C, Weiss B, Schleuning WD, Haendler B", "reference": { "type": "PubMed", "id": "11980563", "url": "https://pubmed.ncbi.nlm.nih.gov/11980563" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NHV9-1", "protein_name": "Rhox homeobox family member 1", "gene_name": "RHOXF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NHV9", "url": "https://www.uniprot.org/uniprotkb/Q8NHV9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11980563", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"journal": "Nucleic acids research", "date": "2000", "authors": "Houchens CR, Montigny W, Zeltser L, Dailey L, Gilbert JM, Heintz NH", "reference": { "type": "PubMed", "id": "10606657", "url": "https://pubmed.ncbi.nlm.nih.gov/10606657" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BWE0-3", "protein_name": "DNA-binding protein REPIN1", "gene_name": "REPIN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BWE0", "url": "https://www.uniprot.org/uniprotkb/Q9BWE0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10606657", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Commun.", "date": "2010", "authors": "Ruschke K, Illes M, Kern M, Kloting I, Fasshauer M, Schon MR, Kosacka J, Fitzl G, Kovacs P, Stumvoll M, Bluher M, Kloting N", "reference": { "type": "PubMed", "id": "20727851", "url": "https://pubmed.ncbi.nlm.nih.gov/20727851" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BWE0-3", "protein_name": "DNA-binding protein REPIN1", "gene_name": "REPIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U4E2-1", "protein_name": "DNA-binding protein REPIN1", "gene_name": "Repin1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BWE0", "url": "https://www.uniprot.org/uniprotkb/Q9BWE0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20727851", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ 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"ADAR3 activates NF-kappaB signaling and promotes glioblastoma cell resistance to temozolomide.", "journal": "Scientific reports", "date": "2022", "authors": "Raghava Kurup R, Oakes EK, Vadlamani P, Nwosu O, Danthi P, Hundley HA", "reference": { "type": "PubMed", "id": "35922651", "url": "https://pubmed.ncbi.nlm.nih.gov/35922651" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NS39-1", "protein_name": "Inactive double-stranded RNA-specific editase B2", "gene_name": "ADARB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NS39", "url": "https://www.uniprot.org/uniprotkb/Q9NS39" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35922651", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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cleavage system at 2.0 A resolution and its implication for understanding non-ketotic hyperglycinemia.", "journal": "Journal of molecular biology", "date": "2005", "authors": "Okamura-Ikeda K, Hosaka H, Yoshimura M, Yamashita E, Toma S, Nakagawa A, Fujiwara K, Motokawa Y, Taniguchi H", "reference": { "type": "PubMed", "id": "16051266", "url": "https://pubmed.ncbi.nlm.nih.gov/16051266" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02218-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "OGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09622-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "DLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23378-1", "protein_name": "Glycine dehydrogenase (decarboxylating), mitochondrial", "gene_name": "GLDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23434-1", "protein_name": "Glycine cleavage system H protein, mitochondrial", "gene_name": "GCSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48728-1", "protein_name": "Aminomethyltransferase, mitochondrial", "gene_name": "AMT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82909", "url": "https://www.uniprot.org/uniprotkb/P82909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 129, "end_pos": 129, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of aminomethyltransferase activity.", "evidence": [ { "database": 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "How dihydrolipoamide dehydrogenase-binding protein binds dihydrolipoamide dehydrogenase in the human pyruvate dehydrogenase complex.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Ciszak EM, Makal A, Hong YS, Vettaikkorumakankauv AK, Korotchkina LG, Patel MS", "reference": { "type": "PubMed", "id": "16263718", "url": "https://pubmed.ncbi.nlm.nih.gov/16263718" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02218-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "OGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09622-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "DLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00330-1", "protein_name": "Pyruvate dehydrogenase protein X component, mitochondrial", "gene_name": "PDHX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23378-1", "protein_name": "Glycine dehydrogenase (decarboxylating), mitochondrial", "gene_name": "GLDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23434-1", "protein_name": "Glycine cleavage system H protein, mitochondrial", "gene_name": "GCSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48728-1", "protein_name": "Aminomethyltransferase, mitochondrial", "gene_name": "AMT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82909", "url": "https://www.uniprot.org/uniprotkb/P82909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16263718", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lipoylation of H-protein of the glycine cleavage system. The effect of site-directed mutagenesis of amino acid residues around the lipoyllysine residue on the lipoate attachment.", "journal": "FEBS letters", "date": "1991", "authors": "Fujiwara K, Okamura-Ikeda K, Motokawa Y", "reference": { "type": "PubMed", "id": "1959641", "url": "https://pubmed.ncbi.nlm.nih.gov/1959641" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02218-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "OGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09622-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "DLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23378-1", "protein_name": "Glycine dehydrogenase (decarboxylating), mitochondrial", "gene_name": "GLDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23434-1", "protein_name": "Glycine cleavage system H protein, mitochondrial", "gene_name": "GCSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48728-1", "protein_name": "Aminomethyltransferase, mitochondrial", "gene_name": "AMT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82909", "url": "https://www.uniprot.org/uniprotkb/P82909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1959641", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The glycine cleavage system. Molecular cloning of the chicken and human glycine decarboxylase cDNAs and some characteristics involved in the deduced protein structures.", "journal": "The Journal of biological chemistry", "date": "1991", "authors": "Kume A, Koyata H, Sakakibara T, Ishiguro Y, Kure S, Hiraga K", "reference": { "type": "PubMed", "id": "1993704", "url": "https://pubmed.ncbi.nlm.nih.gov/1993704" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02218-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "OGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09622-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "DLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15505-1", "protein_name": "Glycine dehydrogenase (decarboxylating), mitochondrial", "gene_name": "GLDC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P23378-1", "protein_name": "Glycine dehydrogenase (decarboxylating), mitochondrial", "gene_name": "GLDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23434-1", "protein_name": "Glycine cleavage system H protein, mitochondrial", "gene_name": "GCSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48728-1", "protein_name": "Aminomethyltransferase, mitochondrial", "gene_name": "AMT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82909", "url": "https://www.uniprot.org/uniprotkb/P82909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The primary structure of human H-protein of the glycine cleavage system deduced by cDNA cloning.", "journal": "Biochemical and biophysical research communications", "date": "1991", "authors": "Fujiwara K, Okamura-Ikeda K, Hayasaka K, 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human Krebs cycle 2-oxoglutarate dehydrogenase complex creates an additional source of superoxide/hydrogen peroxide from 2-oxoadipate as alternative substrate.", "journal": "Free radical biology & medicine", "date": "2017-07", "authors": "Nemeria Natalia S, Gerfen Gary, Guevara Elena, Nareddy Pradeep Reddy, Szostak Michal, Jordan Frank", "reference": { "type": "PubMed", "id": "28435050", "url": "https://pubmed.ncbi.nlm.nih.gov/28435050" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 424, "end_pos": 424, "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of dihydrolipoyllysine-residue succinyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "P36957", "url": "https://www.uniprot.org/uniprotkb/P36957" }, { "database": "PubMed", "id": "30929736", "url": "https://pubmed.ncbi.nlm.nih.gov/30929736" } ], "uniprot_canonical_ac": "P36957-1" } ], "record_id": "pubmed.30929736", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of the glycine cleavage reaction. Further characterization of the intermediate attached to H-protein and of the reaction catalyzed by T-protein.", "journal": "The Journal of biological chemistry", "date": "1984", "authors": "Fujiwara K, Okamura-Ikeda K, Motokawa Y", "reference": { "type": "PubMed", "id": "6469978", "url": "https://pubmed.ncbi.nlm.nih.gov/6469978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02218-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "OGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09622-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "DLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23378-1", "protein_name": "Glycine dehydrogenase (decarboxylating), mitochondrial", "gene_name": "GLDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23434-1", "protein_name": "Glycine cleavage system H protein, mitochondrial", "gene_name": "GCSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48728-1", "protein_name": "Aminomethyltransferase, mitochondrial", "gene_name": "AMT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82909", "url": "https://www.uniprot.org/uniprotkb/P82909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6469978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02218-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "OGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09622-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "DLD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82909", "url": "https://www.uniprot.org/uniprotkb/P82909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8076640", 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"glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dihydrolipoamide dehydrogenase-binding protein of the human pyruvate dehydrogenase complex. DNA-derived amino acid sequence, expression, and reconstitution of the pyruvate dehydrogenase complex.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Harris RA, Bowker-Kinley MM, Wu P, Jeng J, Popov KM", "reference": { "type": "PubMed", "id": "9242632", "url": "https://pubmed.ncbi.nlm.nih.gov/9242632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82909-1", "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "gene_name": "KGD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36957-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02218-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "OGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09622-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "DLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00330-1", "protein_name": "Pyruvate dehydrogenase protein X component, mitochondrial", "gene_name": "PDHX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23378-1", "protein_name": "Glycine dehydrogenase (decarboxylating), mitochondrial", "gene_name": "GLDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23434-1", "protein_name": "Glycine cleavage system H protein, mitochondrial", "gene_name": "GCSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48728-1", "protein_name": "Aminomethyltransferase, mitochondrial", "gene_name": "AMT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82909", "url": "https://www.uniprot.org/uniprotkb/P82909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9242632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Genet.", "date": "2010", "authors": "Doherty L, Sheen MR, Vlachos A, Choesmel V, O'Donohue MF, Clinton C, Schneider HE, Sieff CA, Newburger PE, Ball SE, Niewiadomska E, Matysiak M, Glader B, Arceci RJ, Farrar JE, Atsidaftos E, Lipton JM, Gleizes PE, Gazda HT", "reference": { "type": "PubMed", "id": "20116044", "url": "https://pubmed.ncbi.nlm.nih.gov/20116044" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46783", "url": "https://www.uniprot.org/uniprotkb/P46783" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20116044", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Methylation of ribosomal protein S10 by protein-arginine methyltransferase 5 regulates ribosome biogenesis.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Ren J, Wang Y, Liang Y, Zhang Y, Bao S, Xu Z", "reference": { "type": "PubMed", "id": "20159986", "url": "https://pubmed.ncbi.nlm.nih.gov/20159986" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14744-1", "protein_name": "Protein arginine N-methyltransferase 5", "gene_name": "PRMT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46783", "url": "https://www.uniprot.org/uniprotkb/P46783" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 158, "end_pos": 158, "sequence_org": "R", "sequence_mut": "K", "comment": "Weakly methylated. 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Complete loss of methylation; inefficient assembly into ribosomes; instability; increased degradation by the proteasomal pathway; decreased interaction with NPM1; absence of localization in the granular component (GC) region of the nucleolus; when associated with K-158.", "evidence": [ { "database": "UniProtKB", "id": "P46783", "url": "https://www.uniprot.org/uniprotkb/P46783" }, { "database": "PubMed", "id": "20159986", "url": "https://pubmed.ncbi.nlm.nih.gov/20159986" } ], "uniprot_canonical_ac": "P46783-1" } ], "record_id": "pubmed.20159986", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The G3BP1-Family-USP10 Deubiquitinase Complex Rescues Ubiquitinated 40S Subunits of Ribosomes Stalled in Translation from Lysosomal Degradation.", "journal": "Molecular cell", "date": "2020-03-19", "authors": "Meyer Cindy, Garzia Aitor, Morozov Pavel, Molina Henrik, Tuschl Thomas", "reference": { "type": "PubMed", "id": "31981475", "url": "https://pubmed.ncbi.nlm.nih.gov/31981475" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13283-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14694-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 10", "gene_name": "USP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN86-1", "protein_name": "Ras GTPase-activating protein-binding protein 2", "gene_name": "G3BP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46783", "url": "https://www.uniprot.org/uniprotkb/P46783" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 214, "end_pos": 214, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on sumoylation. Abolishes sumoylation; when associated with R-18 and R-230. Abolished ubiquitination by RNF10 in response to ribosome stalling and deubiquitination by USP10.", "evidence": [ { "database": "UniProtKB", "id": "P23396", "url": "https://www.uniprot.org/uniprotkb/P23396" }, { "database": "PubMed", "id": "21968017", "url": "https://pubmed.ncbi.nlm.nih.gov/21968017" }, { "database": "PubMed", "id": "34348161", "url": "https://pubmed.ncbi.nlm.nih.gov/34348161" }, { "database": "PubMed", "id": "31981475", "url": "https://pubmed.ncbi.nlm.nih.gov/31981475" }, { "database": "PubMed", "id": "39609413", "url": "https://pubmed.ncbi.nlm.nih.gov/39609413" }, { "database": "PubMed", "id": "39947182", "url": "https://pubmed.ncbi.nlm.nih.gov/39947182" } ], "uniprot_canonical_ac": "P23396-1" }, { "start_pos": 227, "end_pos": 227, "sequence_org": "K", "sequence_mut": "R", "comment": "Does not affect ubiquitination in response to ribosome stalling.", "evidence": [ { "database": "UniProtKB", "id": "P23396", "url": "https://www.uniprot.org/uniprotkb/P23396" }, { "database": "PubMed", "id": "34348161", "url": "https://pubmed.ncbi.nlm.nih.gov/34348161" }, { "database": "PubMed", "id": "31981475", "url": "https://pubmed.ncbi.nlm.nih.gov/31981475" } ], "uniprot_canonical_ac": "P23396-1" }, { "start_pos": 230, "end_pos": 230, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on sumoylation. Abolishes sumoylation; when associated with R-18 and R-214. Does not affect ubiquitination in response to ribosome stalling.", "evidence": [ { "database": "UniProtKB", "id": "P23396", "url": "https://www.uniprot.org/uniprotkb/P23396" }, { "database": "PubMed", "id": "21968017", "url": "https://pubmed.ncbi.nlm.nih.gov/21968017" }, { "database": "PubMed", "id": "34348161", "url": "https://pubmed.ncbi.nlm.nih.gov/34348161" }, { "database": "PubMed", "id": "31981475", "url": "https://pubmed.ncbi.nlm.nih.gov/31981475" } ], "uniprot_canonical_ac": "P23396-1" }, { "start_pos": 424, "end_pos": 424, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes deubiquitinating activity and ability to deubiquitinate 40S ribosomal proteins.", "evidence": [ { "database": "UniProtKB", "id": "Q14694", "url": "https://www.uniprot.org/uniprotkb/Q14694" }, { "database": "PubMed", "id": "21962518", "url": "https://pubmed.ncbi.nlm.nih.gov/21962518" }, { "database": "PubMed", "id": "24845384", "url": "https://pubmed.ncbi.nlm.nih.gov/24845384" }, { "database": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct regulatory ribosomal ubiquitylation events are reversible and hierarchically organized.", "journal": "eLife", "date": "2020-02-03", "authors": "Garshott Danielle M, Sundaramoorthy Elayanambi, Leonard Marilyn, Bennett Eric J", "reference": { "type": "PubMed", "id": "32011234", "url": "https://pubmed.ncbi.nlm.nih.gov/32011234" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T2D3-1", "protein_name": "OTU domain-containing protein 3", "gene_name": "OTUD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK80-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 21", "gene_name": "USP21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14694-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 10", "gene_name": "USP10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46783", "url": "https://www.uniprot.org/uniprotkb/P46783" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 138, "end_pos": 139, "sequence_org": "KK", "sequence_mut": "RR", "comment": "Abolishes monoubiquitination by ZNF598, leading to enhanced readthrough on the poly(A)-stall sequences.", "evidence": [ { "database": "UniProtKB", "id": "P46783", "url": "https://www.uniprot.org/uniprotkb/P46783" }, { "database": "PubMed", "id": "28065601", "url": 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stably bound by HLA-A*0201 is significantly reduced in the absence of tapasin.", "journal": "Tissue antigens", "date": "2001-12", "authors": "Barber L D, Howarth M, Bowness P, Elliott T", "reference": { "type": "PubMed", "id": "11929586", "url": "https://pubmed.ncbi.nlm.nih.gov/11929586" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62917", "url": "https://www.uniprot.org/uniprotkb/P62917" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11929586", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteasome-independent HLA-B27 ligands arise mainly from small basic proteins.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-05", "authors": "Marcilla Miguel, Cragnolini Juan J, L\u00f3pez de Castro Jos\u00e9 A", "reference": { "type": "PubMed", "id": "17308301", "url": "https://pubmed.ncbi.nlm.nih.gov/17308301" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14324-1", "protein_name": "Farnesyl pyrophosphate synthase", "gene_name": "FDPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99829-1", "protein_name": "Copine-1", "gene_name": "CPNE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10619-1", "protein_name": "Lysosomal protective protein", "gene_name": "CTSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13200-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 2", "gene_name": "PSMD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXE6-1", "protein_name": "Armadillo repeat-containing protein 6", "gene_name": "ARMC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13283-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48201-1", "protein_name": "ATP synthase F(0) complex subunit C3, mitochondrial", "gene_name": "ATP5MC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43242-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3", "gene_name": "PSMD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2H1-1", "protein_name": "Serine/threonine-protein kinase 38-like", "gene_name": "STK38L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07195-1", "protein_name": "L-lactate dehydrogenase B chain", "gene_name": "LDHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49721-1", "protein_name": "Proteasome subunit beta type-2", "gene_name": "PSMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20618-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PSMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37268-1", "protein_name": "Squalene synthase", "gene_name": "FDFT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13794-1", "protein_name": "Phorbol-12-myristate-13-acetate-induced protein 1", "gene_name": "PMAIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTJ3-1", "protein_name": "Structural maintenance of chromosomes protein 4", "gene_name": "SMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AG3-1", "protein_name": "Mitochondrial outer membrane protein SLC25A46", "gene_name": "SLC25A46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N4H5-1", "protein_name": "Mitochondrial import receptor subunit TOM5 homolog", "gene_name": "TOMM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15239-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "gene_name": "NDUFA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y39-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11", "gene_name": "NDUFA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0J0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13", "gene_name": "NDUFA13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15155-1", "protein_name": "BOS complex subunit NOMO1", "gene_name": "NOMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50395-1", "protein_name": "Rab GDP dissociation inhibitor beta", "gene_name": "GDI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14005-1", "protein_name": "Pro-interleukin-16", "gene_name": "IL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15005-1", "protein_name": "Signal peptidase complex subunit 2", "gene_name": "SPCS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30101-1", "protein_name": "Protein disulfide-isomerase A3", "gene_name": "PDIA3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62917", "url": "https://www.uniprot.org/uniprotkb/P62917" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17308301", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of self peptides bound to purified HLA-B27.", "journal": "Nature", "date": "1991-09-26", "authors": "Jardetzky T S, Lane W S, Robinson R A, Madden D R, Wiley D C", "reference": { "type": "PubMed", "id": "1922338", "url": "https://pubmed.ncbi.nlm.nih.gov/1922338" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62917", "url": "https://www.uniprot.org/uniprotkb/P62917" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1922338", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The diversity of the HLA-E-restricted peptide repertoire explains the immunological impact of the Arg107Gly mismatch.", "journal": "Immunogenetics", "date": "2016-01", "authors": "Celik Alexander A, Kraemer Thomas, Huyton Trevor, Blasczyk Rainer, Bade-D\u00f6ding Christina", "reference": { "type": "PubMed", "id": "26552660", "url": "https://pubmed.ncbi.nlm.nih.gov/26552660" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2L5-1", "protein_name": "Trafficking protein particle complex subunit 8", "gene_name": "TRAPPC8", "tax_name": 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hepatocellular carcinoma by down-regulating the mTORC1 signalling pathway.", "journal": "Human cell", "date": "2022-12-28", "authors": "Sun Tao, Zhu Weiying, Ru Qingjing, Zheng Yi", "reference": { "type": "PubMed", "id": "36577883", "url": "https://pubmed.ncbi.nlm.nih.gov/36577883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62917", "url": "https://www.uniprot.org/uniprotkb/P62917" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36577883", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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Commun.", "date": "1993", "authors": "Hanes J, Klaudiny J, von der Kammer H, Scheit KH", "reference": { "type": "PubMed", "id": "7506540", "url": "https://pubmed.ncbi.nlm.nih.gov/7506540" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62917", "url": "https://www.uniprot.org/uniprotkb/P62917" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7506540", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"ELAV-like protein 2", "gene_name": "ELAVL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DMV8-1", "protein_name": "Heat shock 70 kDa protein 1A", "gene_name": "HSPA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46781", "url": "https://www.uniprot.org/uniprotkb/P46781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17289661", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Ribosomal Protein S9 Expression in Multiple Myeloma and Its Effect on Cell Biological Function].", "journal": "Zhongguo yi xue ke xue yuan xue bao. Acta Academiae Medicinae Sinicae", "date": "2019", "authors": "Song KP, Shu P, Ma JL, Wang B, Chen B", "reference": { "type": "PubMed", "id": "31060671", "url": "https://pubmed.ncbi.nlm.nih.gov/31060671" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46781", "url": "https://www.uniprot.org/uniprotkb/P46781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.31060671", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43686-1", "protein_name": "26S proteasome regulatory subunit 6B", "gene_name": "PSMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99436-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "PSMB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWF3-1", "protein_name": "RNA-binding protein 4", "gene_name": "RBM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49588-1", "protein_name": "Alanine--tRNA ligase, cytoplasmic", "gene_name": "AARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QK1-1", "protein_name": "Vacuolar protein sorting-associated protein 35", "gene_name": "VPS35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2G2-1", "protein_name": "STE20-like serine/threonine-protein kinase", "gene_name": "SLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62714-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform", "gene_name": "PPP2CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06132-1", "protein_name": "Uroporphyrinogen decarboxylase", "gene_name": "UROD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN3-1", "protein_name": "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4/5", "gene_name": "MACF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01082-1", "protein_name": "Spectrin beta chain, non-erythrocytic 1", "gene_name": "SPTBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H254-1", "protein_name": "Spectrin beta chain, non-erythrocytic 4", "gene_name": "SPTBN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13283-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12277-1", "protein_name": "Creatine kinase B-type", "gene_name": "CKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15160-1", "protein_name": "DNA-directed RNA polymerases I and III subunit RPAC1", "gene_name": "POLR1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUT1-1", "protein_name": "Dehydrogenase/reductase SDR family member 6", "gene_name": "BDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16568-1", "protein_name": "Cocaine- and amphetamine-regulated transcript protein", "gene_name": "CARTPT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC51-1", "protein_name": "SERPINE1 mRNA-binding protein 1", "gene_name": "SERBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L576-1", "protein_name": "Cytoplasmic FMR1-interacting protein 1", "gene_name": "CYFIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35579-1", "protein_name": "Myosin-9", "gene_name": "MYH9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNH7-1", "protein_name": "Sorting nexin-6", "gene_name": "SNX6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB07-1", "protein_name": "MYG1 exonuclease", "gene_name": "MYG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07195-1", "protein_name": "L-lactate dehydrogenase B chain", "gene_name": "LDHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1G4-1", "protein_name": "Leucine-rich repeat-containing protein 47", "gene_name": "LRRC47", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ80-1", "protein_name": "Proliferation-associated protein 2G4", "gene_name": "PA2G4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15435-1", "protein_name": "Protein phosphatase 1 regulatory subunit 7", "gene_name": "PPP1R7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6S8J3-1", "protein_name": "POTE ankyrin domain family member E", "gene_name": "POTEE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IMI6-1", "protein_name": "Sulfotransferase 1C3", "gene_name": "SULT1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQW7-1", "protein_name": "Xaa-Pro aminopeptidase 1", "gene_name": "XPNPEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75131-1", "protein_name": "Copine-3", "gene_name": "CPNE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST3-1", "protein_name": "Paired amphipathic helix protein Sin3a", "gene_name": "SIN3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27816-1", "protein_name": "Microtubule-associated protein 4", "gene_name": "MAP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNF0-1", "protein_name": "Protein kinase C and casein kinase substrate in neurons protein 2", "gene_name": "PACSIN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29144-1", "protein_name": "Tripeptidyl-peptidase 2", "gene_name": "TPP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35609-1", "protein_name": "Alpha-actinin-2", "gene_name": "ACTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04792-1", "protein_name": "Heat shock protein beta-1", "gene_name": "HSPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99598-1", "protein_name": "Translin-associated protein X", "gene_name": "TSNAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q562R1-1", "protein_name": "Beta-actin-like protein 2", "gene_name": "ACTBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12814-1", "protein_name": "Alpha-actinin-1", "gene_name": "ACTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13185-1", "protein_name": "Chromobox protein homolog 3", "gene_name": "CBX3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68104-1", "protein_name": "Elongation factor 1-alpha 1", "gene_name": "EEF1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25786-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "PSMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40123-1", "protein_name": "Adenylyl cyclase-associated protein 2", "gene_name": "CAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2A7-1", "protein_name": "Nck-associated protein 1", "gene_name": "NCKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08043-1", "protein_name": "Alpha-actinin-3", "gene_name": "ACTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZY2-1", "protein_name": "Phospholipid-transporting ATPase ABCA7", "gene_name": "ABCA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01844-1", "protein_name": "RNA-binding protein EWS", "gene_name": "EWSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92734-1", "protein_name": "Protein TFG", "gene_name": "TFG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07666-1", "protein_name": "KH domain-containing, RNA-binding, signal transduction-associated protein 1", "gene_name": "KHDRBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NE71-1", "protein_name": "ATP-binding cassette sub-family F member 1", "gene_name": "ABCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06830-1", "protein_name": "Peroxiredoxin-1", "gene_name": "PRDX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25788-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PSMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0MZ66-1", "protein_name": "Shootin-1", "gene_name": "SHTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49327-1", "protein_name": "Fatty acid synthase", "gene_name": "FASN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75369-1", "protein_name": "Filamin-B", "gene_name": "FLNB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15149-1", "protein_name": "Plectin", "gene_name": "PLEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33176-1", "protein_name": "Kinesin-1 heavy chain", "gene_name": "KIF5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22059-1", "protein_name": "Oxysterol-binding protein 1", "gene_name": "OSBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15631-1", "protein_name": "Translin", "gene_name": "TSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14697-1", "protein_name": "Neutral alpha-glucosidase AB", "gene_name": "GANAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11413-1", "protein_name": "Glucose-6-phosphate 1-dehydrogenase", "gene_name": "G6PD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14997-1", "protein_name": "Proteasome activator complex subunit 4", "gene_name": "PSME4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60900-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PSMA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43684-1", "protein_name": "Mitotic checkpoint protein BUB3", "gene_name": "BUB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10809-1", "protein_name": "60 kDa heat shock protein, mitochondrial", "gene_name": "HSPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78347-1", "protein_name": "General transcription factor II-I", "gene_name": "GTF2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00499-1", "protein_name": "Myc box-dependent-interacting protein 1", "gene_name": "BIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08209-1", "protein_name": "Protein phosphatase 3 catalytic subunit alpha", "gene_name": "PPP3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86VP6-1", "protein_name": "Cullin-associated NEDD8-dissociated protein 1", "gene_name": "CAND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1N0-1", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "gene_name": "CC2D1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56537-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "EIF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00273-1", "protein_name": "DNA fragmentation factor subunit alpha", "gene_name": "DFFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94776-1", "protein_name": "Metastasis-associated protein MTA2", "gene_name": "MTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55884-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit B", "gene_name": "EIF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z406-1", "protein_name": "Myosin-14", "gene_name": "MYH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35580-1", "protein_name": "Myosin-10", "gene_name": "MYH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "E9PAV3-1", "protein_name": "Nascent polypeptide-associated complex subunit alpha, muscle-specific form", "gene_name": "NACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IN85-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3A", "gene_name": "PPP4R3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01970-1", "protein_name": "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3", "gene_name": "PLCB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06203-1", "protein_name": "Amidophosphoribosyltransferase", "gene_name": "PPAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00232-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 12", "gene_name": "PSMD12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49321-1", "protein_name": "Nuclear autoantigenic sperm protein", "gene_name": "NASP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51858-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "HDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21281-1", "protein_name": "V-type proton ATPase subunit B, brain isoform", "gene_name": "ATP6V1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35241-1", "protein_name": "Radixin", "gene_name": "RDX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Y8-1", "protein_name": "SEC23-interacting protein", "gene_name": "SEC23IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04837-1", "protein_name": "Single-stranded DNA-binding protein, mitochondrial", "gene_name": "SSBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human L7a ribosomal protein: sequence, structural organization, and expression of a functional gene.", "journal": "Gene", "date": "1993", "authors": "De Falco S, Russo G, Angiolillo A, Pietropaolo C", "reference": { "type": "PubMed", "id": "8482538", "url": "https://pubmed.ncbi.nlm.nih.gov/8482538" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62424", "url": "https://www.uniprot.org/uniprotkb/P62424" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8482538", "abstract": "", 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"https://pubmed.ncbi.nlm.nih.gov/33429084" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62701", "url": "https://www.uniprot.org/uniprotkb/P62701" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33429084", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": 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