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"authors": "Von Dannecker LE, Mercadante AF, Malnic B", "reference": { "type": "PubMed", "id": "15829631", "url": "https://pubmed.ncbi.nlm.nih.gov/15829631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80XE1-2", "protein_name": "Chaperone Ric-8B", "gene_name": "Ric8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80XE1", "url": "https://www.uniprot.org/uniprotkb/Q80XE1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15829631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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MH, Xavier VPS, Gutiyama LM, Machado CF, Reis AH, Donnard ER, Galante PAF, Abreu JG, Festuccia WT, Malnic B", "reference": { "type": "PubMed", "id": "32392211", "url": "https://pubmed.ncbi.nlm.nih.gov/32392211" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80XE1-2", "protein_name": "Chaperone Ric-8B", "gene_name": "Ric8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80XE1", "url": "https://www.uniprot.org/uniprotkb/Q80XE1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32392211", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Clin. Invest.", "date": "2017", "authors": "Knies K, Inano S, Ramirez MJ, Ishiai M, Surralles J, Takata M, Schindler D", "reference": { "type": "PubMed", "id": "28691929", "url": "https://pubmed.ncbi.nlm.nih.gov/28691929" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CIK8-1", "protein_name": "E3 ubiquitin-protein ligase RFWD3", "gene_name": "Rfwd3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PCD5-1", "protein_name": "E3 ubiquitin-protein ligase RFWD3", "gene_name": "RFWD3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CIK8", "url": "https://www.uniprot.org/uniprotkb/Q8CIK8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28691929", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamics of the rhomboid-like protein RHBDD2 expression in mouse retina and involvement of its human ortholog in retinitis pigmentosa.", "journal": "The Journal of biological chemistry", "date": "2013", "authors": "Ahmedli NB, Gribanova Y, Njoku CC, Naidu A, Young A, Mendoza E, Yamashita CK, Ozgul RK, Johnson JE, Fox DA, Farber DB", "reference": { "type": "PubMed", "id": "23386608", "url": "https://pubmed.ncbi.nlm.nih.gov/23386608" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEK2-1", "protein_name": "Rhomboid domain-containing protein 2", "gene_name": "Rhbdd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NTF9-1", "protein_name": "Rhomboid domain-containing protein 2", "gene_name": "RHBDD2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEK2", "url": "https://www.uniprot.org/uniprotkb/Q8VEK2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 185, "end_pos": 185, "sequence_org": "S", "sequence_mut": "L", "comment": "No effect on cis-Golgi localization.", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The E3 ubiquitin ligase RNF185 facilitates the cGAS-mediated innate immune response.", "journal": "PLoS pathogens", "date": "2017", "authors": "Wang Q, Huang L, Hong Z, Lv Z, Mao Z, Tang Y, Kong X, Li S, Cui Y, Liu H, Zhang L, Zhang X, Jiang L, Wang C, Zhou Q", "reference": { "type": "PubMed", "id": "28273161", "url": "https://pubmed.ncbi.nlm.nih.gov/28273161" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q91YT2-1", "protein_name": "E3 ubiquitin-protein ligase RNF185", "gene_name": "Rnf185", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N884-1", "protein_name": "Cyclic GMP-AMP synthase", "gene_name": "CGAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GF1-1", "protein_name": "E3 ubiquitin-protein ligase RNF185", "gene_name": "RNF185", "tax_name": "Human" } ], "species": [ { "name": "Mus 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Strongly decreased ubiquitination by RNF185; when associated with R-173.", "evidence": [ { "database": "UniProtKB", "id": "Q8N884", "url": "https://www.uniprot.org/uniprotkb/Q8N884" }, { "database": "PubMed", "id": "28273161", "url": "https://pubmed.ncbi.nlm.nih.gov/28273161" }, { "database": "PubMed", "id": "30799039", "url": "https://pubmed.ncbi.nlm.nih.gov/30799039" } ], "uniprot_canonical_ac": "Q8N884-1" }, { "start_pos": 39, "end_pos": 39, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolished E3 ubiquitin-protein ligase activity and ability to regulate the cGAS-STING pathway; when associated with A-79.", "evidence": [ { "database": "UniProtKB", "id": "Q96GF1", "url": "https://www.uniprot.org/uniprotkb/Q96GF1" }, { "database": "PubMed", "id": "28273161", "url": "https://pubmed.ncbi.nlm.nih.gov/28273161" } ], "uniprot_canonical_ac": "Q96GF1-1" }, { "start_pos": 79, "end_pos": 79, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolished E3 ubiquitin-protein ligase 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"journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2022", "authors": "Fahl SP, Sertori R, Zhang Y, Contreras AV, Harris B, Wang M, Perrigoue J, Balachandran S, Kennedy BK, Wiest DL", "reference": { "type": "PubMed", "id": "35046107", "url": "https://pubmed.ncbi.nlm.nih.gov/35046107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9D7S7-1", "protein_name": "Ribosomal protein eL22-like 1", "gene_name": "Rpl22l1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9D7S7", "url": "https://www.uniprot.org/uniprotkb/Q9D7S7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.35046107", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } 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Biophys. Res. Commun.", "date": "1998", "authors": "Kitano T, Sumiyama K, Shiroishi T, Saitou N", "reference": { "type": "PubMed", "id": "9705835", "url": "https://pubmed.ncbi.nlm.nih.gov/9705835" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QUT0-1", "protein_name": "Ammonium transporter Rh type A", "gene_name": "Rhag", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CF94-1", "protein_name": "Blood group Rh(D) polypeptide", "gene_name": "Rhd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88298-1", "protein_name": "Blood group Rh(D) polypeptide", "gene_name": "Rhd", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q7TNK7-1", "protein_name": "Ammonium transporter Rh type A", "gene_name": "Rhag", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QUT0", "url": "https://www.uniprot.org/uniprotkb/Q9QUT0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9705835", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The members of the RH gene family (RH50 and RH30) followed different evolutionary pathways.", "journal": "J. Mol. Evol.", "date": "1999", "authors": "Matassi G, Cherif-Zahar B, Pesole G, Raynal V, Cartron JP", "reference": { "type": "PubMed", "id": "9929383", "url": "https://pubmed.ncbi.nlm.nih.gov/9929383" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QUT0-1", "protein_name": "Ammonium transporter Rh type A", "gene_name": "Rhag", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CF94-1", "protein_name": "Blood group Rh(D) polypeptide", "gene_name": "Rhd", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QUT0", "url": "https://www.uniprot.org/uniprotkb/Q9QUT0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9929383", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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Kozak CA, Furie BC, Furie B", "reference": { "type": "PubMed", "id": "8639776", "url": "https://pubmed.ncbi.nlm.nih.gov/8639776" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q62170-1", "protein_name": "P-selectin glycoprotein ligand 1", "gene_name": "Selplg", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q62170", "url": "https://www.uniprot.org/uniprotkb/Q62170" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8639776", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 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Reprod.", "date": "2000", "authors": "Koga M, Tanaka H, Yomogida K, Nozaki M, Tsuchida J, Ohta H, Nakamura Y, Masai K, Yoshimura Y, Yamanaka M, Iguchi N, Nojima H, Matsumiya K, Okuyama A, Nishimune Y", "reference": { "type": "PubMed", "id": "11090426", "url": "https://pubmed.ncbi.nlm.nih.gov/11090426" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ESL0-1", "protein_name": "Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial", "gene_name": "Oxct2b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9ESL0", "url": "https://www.uniprot.org/uniprotkb/Q9ESL0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11090426", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene structure and evolution of testicular haploid germ cell-specific genes, Oxct2a and Oxct2b.", "journal": "Genomics", "date": "2004", "authors": "Onishi M, Yasunaga T, Tanaka H, Nishimune Y, Nozaki M", "reference": { "type": "PubMed", "id": "15028287", "url": "https://pubmed.ncbi.nlm.nih.gov/15028287" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ESL0-1", "protein_name": 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Amino Acid Transporters SLC38A9 and SLC36A1 Involved in mTORC1 Signaling in C2C12 Cells.", "journal": "Biomolecules", "date": "2021", "authors": "Wang D, Wan X, Du X, Zhong Z, Peng J, Xiong Q, Chai J, Jiang S", "reference": { "type": "PubMed", "id": "34572527", "url": "https://pubmed.ncbi.nlm.nih.gov/34572527" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BGD6-1", "protein_name": "Neutral amino acid transporter 9", "gene_name": "Slc38a9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K4D3-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "Slc36a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BGD6", "url": "https://www.uniprot.org/uniprotkb/Q8BGD6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.34572527", "abstract": "", "glycosylation": [], "mutagenesis": [], 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