[ { "title": "Early developmental exposure to pentachlorophenol causes alterations on mRNA expressions of caspase protease family in zebrafish embryos.", "journal": "Chemosphere", "date": "2017", "authors": "Zhao Jing, Huang Gaofeng, Xu Ting, Yin Daqiang, Bai Jianfeng, Gu Weihua", "reference": { "type": "PubMed", "id": "28402832", "url": "https://pubmed.ncbi.nlm.nih.gov/28402832" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I9L7-1", "protein_name": "Caspase a", "gene_name": "caspa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q504J1-1", "protein_name": "Caspase b", "gene_name": "caspb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N2M7-1", "protein_name": "Caspase-6", "gene_name": "casp6b.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I9L7", "url": "https://www.uniprot.org/uniprotkb/Q9I9L7" } ], "common_name": "Zebrafish", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the caspase family in zebrafish.", "journal": "PLoS ONE", "date": "2018", "authors": "Spead Olivia, Verreet Tine, Donelson 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Biol.", "date": "2001", "authors": "Martinon F, Hofmann K, Tschopp J", "reference": { "type": "PubMed", "id": "11250163", "url": "https://pubmed.ncbi.nlm.nih.gov/11250163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I9N6-1", "protein_name": "Apoptosis-associated speck-like protein containing a CARD", "gene_name": "pycard", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9C000-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 1", "gene_name": "NLRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX02-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 2", "gene_name": "NLRP2", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I9N6", "url": "https://www.uniprot.org/uniprotkb/Q9I9N6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11250163", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and expression analysis of the ASC gene from mandarin fish and its regulation of NF-kappaB activation.", "journal": "Dev. 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Adv.", "date": "2024", "authors": "Chen J., Wang Y., Xu J., Yu T.", "reference": { "type": "PubMed", "id": "39196933", "url": "https://pubmed.ncbi.nlm.nih.gov/39196933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8AW41-1", "protein_name": "Transcription factor PU.1b isoform 3", "gene_name": "spi1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5MD89-1", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "flt4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QFB6-1", "protein_name": "Transcription factor PU.1a", "gene_name": "spi1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q8AW41", "url": "https://www.uniprot.org/uniprotkb/Q8AW41" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39196933", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The intestinal microbiome and Cetobacterium somerae inhibit viral infection through TLR2-type I IFN signaling axis in zebrafish.", "journal": "Microbiome", "date": "2024", "authors": "Liang Hui, Li Ming, Chen Jie, Zhou Wenhao, Xia Dongmei, Ding Qianwen, Yang Yalin, Zhang Zhen, Ran Chao, Zhou Zhigang", "reference": { "type": "PubMed", "id": "39558430", "url": "https://pubmed.ncbi.nlm.nih.gov/39558430" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8AW41-1", "protein_name": "Transcription factor PU.1b isoform 3", "gene_name": "spi1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8E6E3-1", "protein_name": "Interferon phi 3 precursor", "gene_name": "ifnphi3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TLE6-1", "protein_name": "Interferon gamma related precursor", "gene_name": "ifng1r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P4H4-1", "protein_name": "1.11.1.7; 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Dev.", "date": "1999", "authors": "Mieda M, Kikuchi Y, Hirate Y, Aoki M, Okamoto H", "reference": { "type": "PubMed", "id": "10495292", "url": "https://pubmed.ncbi.nlm.nih.gov/10495292" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W7R3-1", "protein_name": "Teneurin-4", "gene_name": "tenm4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W7R4-1", "protein_name": "Teneurin-3", "gene_name": "tenm3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W7R3", "url": "https://www.uniprot.org/uniprotkb/Q9W7R3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10495292", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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[] } ] }, { "title": "Molecular characterization of the zebrafish PEA3 ETS-domain transcription factor.", "journal": "Oncogene", "date": "1998", "authors": "Brown L A, Amores A, Schilling T F, Jowett T, Baert J L, de Launoit Y, Sharrocks A D", "reference": { "type": "PubMed", "id": "9671318", "url": "https://pubmed.ncbi.nlm.nih.gov/9671318" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PUQ1-1", "protein_name": "ETS translocation variant 4", "gene_name": "etv4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PUQ1", "url": "https://www.uniprot.org/uniprotkb/Q9PUQ1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9671318", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Dev.", "date": "1998", "authors": "Bally-Cuif L, Schatz W J, Ho R K", "reference": { "type": "PubMed", "id": "9784598", "url": "https://pubmed.ncbi.nlm.nih.gov/9784598" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9YGX5-1", "protein_name": "Cytoplasmic polyadenylation element-binding protein 1", "gene_name": "cpeb1b; cpeb1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9YGX5", "url": "https://www.uniprot.org/uniprotkb/Q9YGX5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9784598", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Commun.", "date": "2019", "authors": "Zada D, Bronshtein I, Lerer-Goldshtein T, Garini Y, Appelbaum L", "reference": { "type": "PubMed", "id": "30837464", "url": "https://pubmed.ncbi.nlm.nih.gov/30837464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M3ART8-1", "protein_name": "Telomeric repeat binding factor a isoform X1", "gene_name": "terfa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGX4-1", "protein_name": "Thymopoietin a isoform 1", "gene_name": "tmpoa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAE4-1", "protein_name": "Selenoprotein H", "gene_name": "selenoh", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M3ART8", "url": "https://www.uniprot.org/uniprotkb/A0A8M3ART8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30837464", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Solution structure of the Myb domain of Terfa derived from Zebrafish interacting with both human and plant telomeric DNA.", "journal": "Biochem. 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[] } ] }, { "title": "An evolutionarily conserved PTEN-C/EBPalpha-CTNNA1 axis controls myeloid development and transformation.", "journal": "Blood", "date": "2010", "authors": "Fu Chun-Tang, Zhu Kang-Yong, Mi Jian-Qing, Liu Yuan-Fang, Murray Susan T, Fu Yan-Fang, Ren Chun-Guang, Dong Zhi-Wei, Liu Yi-Jie, Dong Mei, Jin Yi, Chen Yi, Deng Min, Zhang Wu, Chen Bin, Breslin Peter, Chen Sai-Juan, Chen Zhu, Becker Michael W, Zhu Jiang, Zhang Ji-Wang, Liu Ting Xi", "reference": { "type": "PubMed", "id": "20371743", "url": "https://pubmed.ncbi.nlm.nih.gov/20371743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PVF8-1", "protein_name": "Catenin alpha-1", "gene_name": "ctnna1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PHN1-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN", "gene_name": "ptena", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 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[] } ] }, { "title": "Moesin1 and Ve-cadherin are required in endothelial cells during in vivo tubulogenesis.", "journal": "Development", "date": "2010", "authors": "Wang Ying, Kaiser Mark S, Larson Jon D, Nasevicius Aidas, Clark Karl J, Wadman Shannon A, Roberg-Perez Sharon E, Ekker Stephen C, Hackett Perry B, McGrail Maura, Essner Jeffrey J", "reference": { "type": "PubMed", "id": "20736288", "url": "https://pubmed.ncbi.nlm.nih.gov/20736288" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PVF8-1", "protein_name": "Catenin alpha-1", "gene_name": "ctnna1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q66I42-1", "protein_name": "Moesin a", "gene_name": "msna", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68SP4-1", "protein_name": "Cadherin-5", "gene_name": "cdh5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PVF8", "url": 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is essential for proper convergent extension in zebrafish.", "journal": "Biology open", "date": "2016-10-15", "authors": "Han Mitchell K L, Hoijman Esteban, N\u00f6el Emily, Garric Laurence, Bakkers Jeroen, de Rooij Johan", "reference": { "type": "PubMed", "id": "27612508", "url": "https://pubmed.ncbi.nlm.nih.gov/27612508" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PVF8-1", "protein_name": "Catenin alpha-1", "gene_name": "ctnna1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PVF8", "url": "https://www.uniprot.org/uniprotkb/Q9PVF8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27612508", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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Natl. Acad. Sci. U.S.A.", "date": "1999", "authors": "Tsukui T, Capdevila J, Tamura K, Ruiz-Lozano P, Rodriguez-Esteban C, Yonei-Tamura S, Magall\u00f3n J, Chandraratna R A, Chien K, Blumberg B, Evans R M, Belmonte J C", "reference": { "type": "PubMed", "id": "10500184", "url": "https://pubmed.ncbi.nlm.nih.gov/10500184" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W5Z2-1", "protein_name": "Pituitary homeobox 2", "gene_name": "pitx2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W5Z2", "url": "https://www.uniprot.org/uniprotkb/Q9W5Z2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10500184", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish semaphorin Z1b inhibits growing motor axons in vivo.", "journal": "Mech. Dev.", "date": "1999", "authors": "Roos M, Schachner M, Bernhardt R R", "reference": { "type": "PubMed", "id": "10495275", "url": "https://pubmed.ncbi.nlm.nih.gov/10495275" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W686-1", "protein_name": "Semaphorin-3ab", "gene_name": "sema3ab", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W686", "url": "https://www.uniprot.org/uniprotkb/Q9W686" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10495275", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of six zebrafish photoreceptor opsin cDNAs and immunolocalization of their corresponding proteins.", "journal": "Vis. Neurosci.", "date": "1999", "authors": "Vihtelic T S, Doro C J, Hyde D R", "reference": { "type": "PubMed", "id": "10349976", "url": "https://pubmed.ncbi.nlm.nih.gov/10349976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W6A7-1", "protein_name": "Red-sensitive opsin-1", "gene_name": "opn1lw1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P35359-1", "protein_name": "Rhodopsin", "gene_name": "rho", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W6A6-1", "protein_name": "Green-sensitive opsin-4", "gene_name": "opn1mw4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W6A8-1", "protein_name": "Opsin-1, short-wave-sensitive 2", "gene_name": "opn1sw2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W6A9-1", "protein_name": "Opsin-1, short-wave-sensitive 1", "gene_name": "opn1sw1", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene duplication and spectral diversification of cone visual pigments of zebrafish.", "journal": "Genetics", "date": "2003", "authors": "Chinen Akito, Hamaoka Takanori, Yamada Yukihiro, Kawamura Shoji", "reference": { "type": "PubMed", "id": "12618404", "url": "https://pubmed.ncbi.nlm.nih.gov/12618404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W6A7-1", "protein_name": "Red-sensitive opsin-1", "gene_name": "opn1lw1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8AYM7-1", "protein_name": "Green-sensitive opsin-3", "gene_name": "opn1mw3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8AYM8-1", "protein_name": "Green-sensitive opsin-2", "gene_name": "opn1mw2", "tax_name": "Zebrafish" }, { 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Acta", "date": "2001", "authors": "Stuart J A, Cadenas S, Jekabsons M B, Roussel D, Brand M D", "reference": { "type": "PubMed", "id": "11239491", "url": "https://pubmed.ncbi.nlm.nih.gov/11239491" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W720-1", "protein_name": "Dicarboxylate carrier UCP2", "gene_name": "ucp2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W720", "url": "https://www.uniprot.org/uniprotkb/Q9W720" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11239491", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Uncoupling protein 1 in fish uncovers an ancient evolutionary history of mammalian nonshivering thermogenesis.", "journal": "Physiol. Genomics", "date": "2005", "authors": "Jastroch Martin, Wuertz Sven, Kloas Werner, Klingenspor Martin", "reference": { "type": "PubMed", "id": "15886331", "url": "https://pubmed.ncbi.nlm.nih.gov/15886331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W720-1", "protein_name": "Dicarboxylate carrier UCP2", "gene_name": "ucp2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P1T7-1", "protein_name": "ELMO domain-containing protein 2 precursor", "gene_name": "elmod2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W720", "url": "https://www.uniprot.org/uniprotkb/Q9W720" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15886331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Marsupial uncoupling protein 1 sheds light on the evolution of mammalian nonshivering thermogenesis.", "journal": "Physiol. Genomics", "date": "2008", "authors": "Jastroch M, Withers K W, Taudien S, Frappell P B, Helwig M, Fromme T, Hirschberg V, Heldmaier G, McAllan B M, Firth B T, Burmester T, Platzer M, Klingenspor M", "reference": { "type": "PubMed", "id": "17971503", "url": "https://pubmed.ncbi.nlm.nih.gov/17971503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W720-1", "protein_name": "Dicarboxylate carrier UCP2", "gene_name": "ucp2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W720", "url": "https://www.uniprot.org/uniprotkb/Q9W720" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17971503", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 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U.S.A.", "date": "2022", "authors": "Morgan Rachael, Andreassen Anna H, \u00c5sheim Eirik R, Finn\u00f8en Mette H, Dresler Gunnar, Brembu Tore, Loh Adrian, Miest Joanna J, Jutfelt Fredrik", "reference": { "type": "PubMed", "id": "35617428", "url": "https://pubmed.ncbi.nlm.nih.gov/35617428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W720-1", "protein_name": "Dicarboxylate carrier UCP2", "gene_name": "ucp2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WUM0-1", "protein_name": "5'-AMP-activated protein kinase catalytic subunit alpha-1", "gene_name": "prkaa1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H0S2-1", "protein_name": "glutathione transferase", "gene_name": "gsta.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W720", "url": "https://www.uniprot.org/uniprotkb/Q9W720" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", 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