[ { "title": "Comparison of Zebrafish tmem88a mutant and morpholino knockdown phenotypes.", "journal": "PLoS ONE", "date": "2017", "authors": "Eve Alexander M J, Place Elsie S, Smith James C", "reference": { "type": "PubMed", "id": "28192479", "url": "https://pubmed.ncbi.nlm.nih.gov/28192479" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F115-1", "protein_name": "Transmembrane protein 88b", "gene_name": "tmem88b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F115", "url": "https://www.uniprot.org/uniprotkb/E7F115" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28192479", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sp2 is a maternally inherited transcription factor required for embryonic development.", "journal": "J. Biol. Chem.", "date": "2010", "authors": "Xie Jianzhen, Yin Haifeng, Nichols Teresa D, Yoder Jeffrey A, Horowitz Jonathan M", "reference": { "type": "PubMed", "id": "19959469", "url": "https://pubmed.ncbi.nlm.nih.gov/19959469" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q4L6-1", "protein_name": "Transcription factor Sp2", "gene_name": "sp2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q4L6", "url": "https://www.uniprot.org/uniprotkb/F1Q4L6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19959469", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An embryonic atrazine exposure results in reproductive dysfunction in adult zebrafish and morphological alterations in their offspring.", "journal": "Sci. Rep.", "date": "2016", "authors": "Wirbisky Sara E, Weber Gregory J, Sep\u00falveda Maria S, Lin Tsang-Long, Jannasch Amber S, Freeman Jennifer L", "reference": { "type": "PubMed", "id": "26891955", "url": "https://pubmed.ncbi.nlm.nih.gov/26891955" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F258-1", "protein_name": "15-hydroxyprostaglandin dehydrogenase [NAD(+)]", "gene_name": "hpgd", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F258", "url": "https://www.uniprot.org/uniprotkb/E7F258" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26891955", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel IQCE variations confirm its role in postaxial polydactyly and cause ciliary defect phenotype in zebrafish.", "journal": "Hum. Mutat.", "date": "2020", "authors": "Estrada-Cuzcano A, Etard C, Delvallee C, Stoetzel C, Schaefer E, Scheidecker S, Geoffroy V, Schneider A, Studer F, Mattioli F, Chennen K, Sigaudy S, Plassard D, Poch O, Piton A, Strahle U, Muller J, Dollfus H", "reference": { "type": "PubMed", "id": "31549751", "url": "https://pubmed.ncbi.nlm.nih.gov/31549751" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F5G1-1", "protein_name": "IQ domain-containing protein E isoform X1", "gene_name": "iqce", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6IPM2-1", "protein_name": "IQ domain-containing protein E", "gene_name": "IQCE", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F5G1", "url": "https://www.uniprot.org/uniprotkb/E7F5G1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31549751", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and expression of a novel member of Ly-6 superfamily in zebrafish Denio rerio.", "journal": "Dev. Genes Evol.", "date": "2012", "authors": "Ji Dongrui, Liu Pei, Wang Fei, Zhang Shicui, Li Hongyan", "reference": { "type": "PubMed", "id": "22415300", "url": "https://pubmed.ncbi.nlm.nih.gov/22415300" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0S8J0-1", "protein_name": "Ly6/PLAUR domain-containing protein 6B", "gene_name": "lypd6b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3T4-1", "protein_name": "Uncharacterized protein LOC566752 precursor", "gene_name": "si:dkey-102g19.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3U9-1", "protein_name": "Lymphocyte antigen-6, epidermis precursor", "gene_name": "lye", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IAR1-1", "protein_name": "Lymphocyte antigen 6 family member M2 precursor", "gene_name": "ly6m2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IGF8-1", "protein_name": "Lymphocyte antigen 6 family member pge precursor", "gene_name": "ly6pge", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IW80-1", "protein_name": "Lymphocyte antigen 6 family member M6 precursor", "gene_name": "ly6m6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P827-1", "protein_name": "Uncharacterized protein LOC107963954 precursor; Uncharacterized protein isoform X1", "gene_name": "si:dkeyp-80c12.8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0S8J0", "url": "https://www.uniprot.org/uniprotkb/B0S8J0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22415300", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of bovine A20 gene: Expression mediated by NF-kappaB pathway in MDBK cells infected with bovine viral diarrhea virus-1.", "journal": "Gene", "date": "2016", "authors": "Fredericksen Fernanda, Villalba Melina, Olavarr\u00eda V\u00edctor H", "reference": { "type": "PubMed", "id": "26809100", "url": "https://pubmed.ncbi.nlm.nih.gov/26809100" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9QJH9-1", "protein_name": "CB1 cannabinoid receptor-interacting protein 1b", "gene_name": "cnrip1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BKC3-1", "protein_name": "Tumor necrosis factor alpha-induced protein 3", "gene_name": "TNFAIP3", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8M1P8E2-1", "protein_name": "Uncharacterized protein LOC100321084 precursor; Uncharacterized protein isoform X1", "gene_name": "si:ch73-52p7.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PFF3-1", "protein_name": "BAG family molecular chaperone regulator 2", "gene_name": "bag2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E9QJH9", "url": "https://www.uniprot.org/uniprotkb/E9QJH9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26809100", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Cannabinoid Receptor Interacting Proteins 1 of zebrafish are not required for morphological development, viability or fertility.", "journal": "Sci. Rep.", "date": "2017", "authors": "Fin Laura, Bergamin Giorgia, Steiner Roberto A, Hughes Simon M", "reference": { "type": "PubMed", "id": "28687732", "url": "https://pubmed.ncbi.nlm.nih.gov/28687732" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9QJH9-1", "protein_name": "CB1 cannabinoid receptor-interacting protein 1b", "gene_name": "cnrip1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NGR6-1", "protein_name": "Ewing's tumor-associated antigen 1", "gene_name": "etaa1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AL87-1", "protein_name": "4.2.99.18; Aprataxin and PNK-like factor", "gene_name": "aplf", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E9QJH9", "url": "https://www.uniprot.org/uniprotkb/E9QJH9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28687732", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spatio-temporal mRNA tracking in the early zebrafish embryo.", "journal": "Nat. Commun.", "date": "2021", "authors": "Holler Karoline, Neuschulz Anika, Drewe-Bo\u00df Philipp, Mintcheva Janita, Spanjaard Bastiaan, Arsi\u00e8 Roberto, Ohler Uwe, Landthaler Markus, Junker Jan Philipp", "reference": { "type": "PubMed", "id": "34099733", "url": "https://pubmed.ncbi.nlm.nih.gov/34099733" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q5B0-1", "protein_name": "SH2 domain-containing protein 5 isoform 1", "gene_name": "sh2d5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QCI3-1", "protein_name": "Protein Daple", "gene_name": "ccdc88c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PEN2-1", "protein_name": "SHC SH2 domain-binding protein 1", "gene_name": "shcbp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9W9-1", "protein_name": "Protein Hook homolog 2", "gene_name": "hook2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13ABL6-1", "protein_name": "Glutamate receptor-interacting protein 2a isoform 2", "gene_name": "grip2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A286Y917-1", "protein_name": "Anillin", "gene_name": "anln", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9A8-1", "protein_name": "2.3.2.27; E3 ubiquitin-protein ligase TRIM36 isoform 1", "gene_name": "trim36", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q5B0", "url": "https://www.uniprot.org/uniprotkb/F1Q5B0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34099733", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the receptors for prolactin-releasing peptide (PrRP) and Carassius RFamide peptide (C-RFa) in chickens.", "journal": "Endocrinology", "date": "2012", "authors": "Wang Yajun, Wang Crystal Ying, Wu Yuting, Huang Guian, Li Juan, Leung Frederick C", "reference": { "type": "PubMed", "id": "22355069", "url": "https://pubmed.ncbi.nlm.nih.gov/22355069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F496-1", "protein_name": "GTPase IMAP family member 4 isoform 1", "gene_name": "gimap4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QR26-1", "protein_name": "Prolactin releasing hormone 2 precursor", "gene_name": "prlh2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P3Z9-1", "protein_name": "Pseudouridylate synthase RPUSD2", "gene_name": "rpusd2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F496", "url": "https://www.uniprot.org/uniprotkb/E7F496" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22355069", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of a conditional gene trap reveals that tbx5a is required for heart regeneration in zebrafish.", "journal": "PLoS ONE", "date": "2018", "authors": "Grajevskaja Viktorija, Camerota Diana, Bellipanni Gianfranco, Balciuniene Jorune, Balciunas Darius", "reference": { "type": "PubMed", "id": "29933372", "url": "https://pubmed.ncbi.nlm.nih.gov/29933372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JLP7-1", "protein_name": "Ankyrin repeat domain-containing protein 12", "gene_name": "ankrd12", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { 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Neurobiol.", "date": "2015", "authors": "Hinaux H\u00e9l\u00e8ne, Blin Maryline, Fumey Julien, Legendre Laurent, Heuz\u00e9 Aur\u00e9lie, Casane Didier, R\u00e9taux Sylvie", "reference": { "type": "PubMed", "id": "25348293", "url": "https://pubmed.ncbi.nlm.nih.gov/25348293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0S6P0-1", "protein_name": "Crystallin, gamma M2d9", "gene_name": "crygm2d9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1MZY8-1", "protein_name": "Crystallin, gamma M2d6", "gene_name": "crygm2d6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0R2-1", "protein_name": "Crystallin, gamma M2d15", "gene_name": "crygm2d15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5I8-1", "protein_name": "Crystallin, beta A1, like 1", "gene_name": "cryba1l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9H1-1", "protein_name": "Crystallin, gamma M2d2", "gene_name": "crygm2d2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QE97-1", "protein_name": "Crystallin, gamma S1 isoform 1", "gene_name": "crygs1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0S6P0", "url": "https://www.uniprot.org/uniprotkb/B0S6P0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25348293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of Kruppel-like factor 9 deregulates both physiological gene expression and development.", "journal": "Sci. 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Mol. Genet.", "date": "2014", "authors": "Iglesias Adriana I, Springelkamp Henri\u00ebt, van der Linde Herma, Severijnen Lies-Anne, Amin Najaf, Oostra Ben, Kockx Christel E M, van den Hout Mirjam C G N, van Ijcken Wilfred F J, Hofman Albert, Uitterlinden Andr\u00e9 G, Verdijk Rob M, Klaver Caroline C W, Willemsen Rob, van Duijn Cornelia M", "reference": { "type": "PubMed", "id": "24150847", "url": "https://pubmed.ncbi.nlm.nih.gov/24150847" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0UXZ0-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor C", "gene_name": "cdkn2c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R4Z6-1", "protein_name": "Dachshund b", "gene_name": "dachb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0UXZ0", "url": "https://www.uniprot.org/uniprotkb/B0UXZ0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": 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Genet.", "date": "2013", "authors": "Cardenas-Rodriguez M, Osborn DP, Irigoin F, Grana M, Romero H, Beales PL, Badano JL", "reference": { "type": "PubMed", "id": "23015189", "url": "https://pubmed.ncbi.nlm.nih.gov/23015189" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8A4M8-1", "protein_name": "Coiled-coil domain-containing protein 28B", "gene_name": "ccdc28b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9BUN5-1", "protein_name": "Coiled-coil domain-containing protein 28B", "gene_name": "CCDC28B", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8A4M8", "url": "https://www.uniprot.org/uniprotkb/B8A4M8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23015189", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Bardet-Biedl syndrome-related protein CCDC28B modulates mTORC2 function and interacts with SIN1 to control cilia length independently of the mTOR complex.", "journal": "Hum. 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Saltatory control of isometric growth in the zebrafish caudal fin is disrupted in long fin and rapunzel mutants.", "journal": "Dev. Biol.", "date": "2003", "authors": "Goldsmith Matthew I, Fisher Shannon, Waterman Rick, Johnson Stephen L", "reference": { "type": "PubMed", "id": "12871703", "url": "https://pubmed.ncbi.nlm.nih.gov/12871703" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JHY7-1", "protein_name": "Enamelin precursor", "gene_name": "enam", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QUP1-1", "protein_name": "Protein rapunzel", "gene_name": "rpz", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JHY7", "url": "https://www.uniprot.org/uniprotkb/B8JHY7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 90, "end_pos": 90, "sequence_org": "V", "sequence_mut": "E", "comment": "In c14; gain-of-function mutation. Homozygous lethal, with no survival beyond 5 days post-fertilization (dpf). At 3 dpf, embryos show a range of developmental defects including a shortened and curved body axis, pericardial edema, malformed fin folds and a poorly developed jaw. Heterozygous adults have a fin overgrowth phenotype characterized by increased segment number. In addition, animals develop marked hyperossification of the axial skeleton. 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Biol.", "date": "2006", "authors": "Goldsmith Matthew I, Iovine M Kathryn, O'Reilly-Pol Thomas, Johnson Stephen L", "reference": { "type": "PubMed", "id": "16844108", "url": "https://pubmed.ncbi.nlm.nih.gov/16844108" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JHY7-1", "protein_name": "Enamelin precursor", "gene_name": "enam", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JHY7", "url": "https://www.uniprot.org/uniprotkb/B8JHY7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16844108", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bone growth in zebrafish fins occurs via multiple pulses of cell proliferation.", "journal": "Dev. Dyn.", "date": "2007", "authors": "Jain Isha, Stroka Christine, Yan Jianying, Huang Wei-Min, Iovine M Kathryn", "reference": { "type": "PubMed", "id": "17676636", "url": "https://pubmed.ncbi.nlm.nih.gov/17676636" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JHY7-1", "protein_name": "Enamelin precursor", "gene_name": "enam", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JHY7", "url": "https://www.uniprot.org/uniprotkb/B8JHY7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17676636", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Calcineurin regulates coordinated outgrowth of zebrafish regenerating fins.", "journal": "Dev. Cell", "date": "2014", "authors": "Kujawski Satu, Lin Weilin, Kitte Florian, B\u00f6rmel Mandy, Fuchs Steffen, Arulmozhivarman Guruchandar, Vogt Sebastian, Theil Denise, Zhang Yixin, Antos Christopher L", "reference": { "type": "PubMed", "id": "24561038", "url": "https://pubmed.ncbi.nlm.nih.gov/24561038" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JHY7-1", "protein_name": "Enamelin precursor", "gene_name": "enam", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWW7-1", "protein_name": "Bone morphogenetic protein 8A precursor", "gene_name": "bmp8a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B1V9-1", "protein_name": "Serine/threonine-protein phosphatase", "gene_name": "ppp3ccb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JHY7", "url": "https://www.uniprot.org/uniprotkb/B8JHY7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24561038", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Live Monitoring of Blastemal Cell Contributions during Appendage Regeneration.", "journal": "Curr. 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Immunol.", "date": "2017", "authors": "Langevin Christelle, Aleksejeva Elina, Houel Armel, Briolat Val\u00e9rie, Torhy Corinne, Lunazzi Aur\u00e9lie, Levraud Jean-Pierre, Boudinot Pierre", "reference": { "type": "PubMed", "id": "28603526", "url": "https://pubmed.ncbi.nlm.nih.gov/28603526" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JLS7-1", "protein_name": "Tripartite motif containing 35-34", "gene_name": "trim35-34", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1MT11-1", "protein_name": "Tripartite motif containing 35-22", "gene_name": "trim35-22", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NGD4-1", "protein_name": "Tripartite motif containing 35-31", "gene_name": "trim35-31", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8Y3-1", "protein_name": "Tripartite motif containing 35-9", "gene_name": "trim35-9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QSW1-1", "protein_name": "Uncharacterized protein LOC334149", "gene_name": "trim35-40", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IIJ3-1", "protein_name": "Tripartite motif containing 35-23", "gene_name": "trim35-23", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IPB1-1", "protein_name": "Tripartite motif containing 35-21", "gene_name": "trim35-21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A286Y945-1", "protein_name": "FinTRIM family, member 81", "gene_name": "ftr81", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GIM4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM69 isoform X1", "gene_name": "trim69", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JLS7", "url": "https://www.uniprot.org/uniprotkb/B8JLS7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28603526", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene responses in the central nervous system of zebrafish embryos exposed to the neurotoxicant methyl mercury.", "journal": "Environ. Sci. Technol.", "date": "2013", "authors": "Ho Nga Yu, Yang Lixin, Legradi Jessica, Armant Olivier, Takamiya Masanari, Rastegar Sepand, Str\u00e4hle Uwe", "reference": { "type": "PubMed", "id": "23458150", "url": "https://pubmed.ncbi.nlm.nih.gov/23458150" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JME6-1", "protein_name": "Uncharacterized protein LOC555816 precursor", "gene_name": "si:ch1073-126c3.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B3H9-1", "protein_name": "Nephronectin a isoform X1", "gene_name": "npnta", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P097-1", "protein_name": "Monocarboxylate transporter 9", "gene_name": "slc16a9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5K1-1", "protein_name": "Chromobox homolog 7a", "gene_name": "cbx7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAI0-1", "protein_name": "Krueppel-like factor 11b", "gene_name": "klf11b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3K7-1", "protein_name": "Complement C4-B", "gene_name": "c4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NB90-1", "protein_name": "UDP-glucuronosyltransferase", "gene_name": "ugt5a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AA18-1", "protein_name": "Bromodomain-containing protein 8", "gene_name": "brd8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NXI0-1", "protein_name": "6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 4b isoform 1", "gene_name": "pfkfb4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QZX9-1", "protein_name": "Cocaine- and amphetamine-regulated transcript protein-like precursor", "gene_name": "cart3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B846-1", "protein_name": "Complement component C6 precursor", "gene_name": "c6.1; c6.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IBI5-1", "protein_name": "Uncharacterized protein LOC797677 precursor", "gene_name": "si:dkey-247k7.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JME6", "url": "https://www.uniprot.org/uniprotkb/B8JME6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23458150", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comprehensive and quantitative proteomic analyses of zebrafish plasma reveals conserved protein profiles between genders and between zebrafish and human.", "journal": "Sci. Rep.", "date": "2016", "authors": "Li Caixia, Tan Xing Fei, Lim Teck Kwang, Lin Qingsong, Gong Zhiyuan", "reference": { "type": "PubMed", "id": "27071722", "url": "https://pubmed.ncbi.nlm.nih.gov/27071722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JME6-1", "protein_name": "Uncharacterized protein LOC555816 precursor", "gene_name": "si:ch1073-126c3.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FEJ4-1", "protein_name": "Vitelline membrane outer layer 1 homolog a precursor", "gene_name": "vmo1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QC84-1", "protein_name": "Coagulation factor XIII, A1 polypeptide a, tandem duplicate 1", "gene_name": "f13a1a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40EBQ7-1", "protein_name": "Thyroxine-binding globulin", "gene_name": "zgc:174259", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JME6", "url": "https://www.uniprot.org/uniprotkb/B8JME6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27071722", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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and Regulates the Zebrafish Germ Stem Cell Niche in Autocrine- and Paracrine-Dependent Manners.", "journal": "Cells", "date": "2022", "authors": "Doretto Lucas B, Butzge Arno J, Nakajima Rafael T, Martinez Emanuel R M, de Souza Beatriz Marques, Rodrigues Maira da Silva, Rosa Ivana F, Ricci Juliana M B, Tovo-Neto Aldo, Costa Daniel F, Malafaia Guilherme, Shao Changwei, N\u00f3brega Rafael H", "reference": { "type": "PubMed", "id": "35455974", "url": "https://pubmed.ncbi.nlm.nih.gov/35455974" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JME6-1", "protein_name": "Uncharacterized protein LOC555816 precursor", "gene_name": "si:ch1073-126c3.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F349-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "bms1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A6E8-1", "protein_name": "Leucine zipper putative tumor suppressor 2 homolog", "gene_name": "lzts2a", "tax_name": 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Genes Evol.", "date": "2015", "authors": "Ji Dongrui, Li Lingyi, Zhang Shicui, Li Hongyan", "reference": { "type": "PubMed", "id": "25586305", "url": "https://pubmed.ncbi.nlm.nih.gov/25586305" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F0J8-1", "protein_name": "Neuromast-expressed gpi-anchored lymphocyte antigen 6 precursor", "gene_name": "negaly6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F0J8", "url": "https://www.uniprot.org/uniprotkb/E7F0J8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25586305", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila.", "journal": "Elife", "date": "2019", "authors": "Cheng Shouqiang, Ashley James, Kurleto Justyna D, Lobb-Rabe Meike, Park Yeonhee Jenny, Carrillo Robert A, \u00d6zkan Engin", "reference": { "type": "PubMed", "id": "30688651", "url": "https://pubmed.ncbi.nlm.nih.gov/30688651" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VT83-1", "protein_name": "Defective proboscis extension response 10, isoform A; 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple isoforms of the Activin-like receptor baboon differentially regulate proliferation and conversion behaviors of neuroblasts and neuroepithelial cells in the Drosophila larval brain.", "journal": "PloS one", "date": "2024", "authors": "Lee Gyunghee G, Peterson Aidan J, Kim Myung-Jun, O'Connor Michael B, Park Jae H", "reference": { "type": "PubMed", "id": "38913612", "url": "https://pubmed.ncbi.nlm.nih.gov/38913612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VQG9-1", "protein_name": "Protein dawdle", "gene_name": "daw", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "A1Z7L8-1", "protein_name": "Receptor protein serine/threonine kinase babo", "gene_name": "babo", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O96660-1", "protein_name": "SMAD family member 2", "gene_name": "Smox", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, 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[] } ] }, { "title": "The Drosophila melanogaster homologue of the human histo-blood group Pk gene encodes a glycolipid-modifying alpha1,4-N-acetylgalactosaminyltransferase.", "journal": "The Biochemical journal", "date": "2004-08-15", "authors": "Mucha J\u00e1n, Domlatil Jir\u00ed, Lochnit G\u00fcnter, Rendi\u0107 Dubravko, Paschinger Katharina, Hinterk\u00f6rner Georg, Hofinger Andreas, Kosma Paul, Wilson Iain B H", "reference": { "type": "PubMed", "id": "15130086", "url": "https://pubmed.ncbi.nlm.nih.gov/15130086" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VQK4-1", "protein_name": "Alpha1,4-N-acetylgalactosaminyltransferase 1", "gene_name": "alpha4GT1", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VQK4", "url": "https://www.uniprot.org/uniprotkb/Q9VQK4" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.15130086", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glycosphingolipids with extended sugar chain have specialized functions in development and behavior of Drosophila.", "journal": "Developmental biology", "date": "2007-06-15", "authors": "Chen Ya-Wen, Pedersen Johannes W, Wandall Hans H, Levery Steven B, Pizette Sandrine, Clausen Henrik, Cohen Stephen M", "reference": { "type": "PubMed", "id": "17498683", "url": "https://pubmed.ncbi.nlm.nih.gov/17498683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VQK4-1", "protein_name": "Alpha1,4-N-acetylgalactosaminyltransferase 1", "gene_name": "alpha4GT1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O01346-1", "protein_name": "Glycolipid beta-1,4-mannosyltransferase egh", "gene_name": "egh", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24157-1", "protein_name": "Beta-1,4-mannosylglycolipid beta-1,3-N-acetylglucosaminyltransferase brn", "gene_name": "brn", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7KN92-1", "protein_name": "Beta1,4-N-acetylgalactosaminyltransferase A", "gene_name": "beta4GalNAcTA", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VBL5-1", "protein_name": 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"species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VQK4", "url": "https://www.uniprot.org/uniprotkb/Q9VQK4" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.19252929", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dual roles of \u03b11,4-galactosyltransferase\u00a01 in spermatogenesis of Drosophila melanogaster.", "journal": "Insect science", "date": "2025-02", "authors": "Xiao Yanhong, Huang Bo, Chen Sibo, Lin Zhikai, Zhu Zhiying, Lu Yuzhen, Yu Xiao-Qiang, Wen Liang, Hu Qihao", "reference": { "type": "PubMed", "id": "38643371", "url": "https://pubmed.ncbi.nlm.nih.gov/38643371" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VQK4-1", "protein_name": "Alpha1,4-N-acetylgalactosaminyltransferase 1", "gene_name": "alpha4GT1", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VQK4", "url": "https://www.uniprot.org/uniprotkb/Q9VQK4" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for substrate activation and regulation by cystathionine beta-synthase (CBS) domains in cystathionine {beta}-synthase.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2010", "authors": "Koutmos Markos, Kabil Omer, Smith Janet L, Banerjee Ruma", "reference": { "type": "PubMed", "id": "21081698", "url": "https://pubmed.ncbi.nlm.nih.gov/21081698" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VRD9-1", "protein_name": "Cystathionine beta-synthase", "gene_name": "Cbs", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VRD9", "url": "https://www.uniprot.org/uniprotkb/Q9VRD9" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.21081698", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"Sperm-Leucylaminopeptidases are required for male fertility as structural components of mitochondrial paracrystalline material in Drosophila melanogaster sperm.", "journal": "PLoS genetics", "date": "2019-02", "authors": "Laurinyecz Barbara, Vedelek Viktor, Kov\u00e1cs Attila L, Szilasi Kinga, Lipinszki Zolt\u00e1n, Slez\u00e1k Csilla, Darula Zsuzsanna, Juh\u00e1sz G\u00e1bor, Sinka Rita", "reference": { "type": "PubMed", "id": "30802236", "url": "https://pubmed.ncbi.nlm.nih.gov/30802236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VSM6-1", "protein_name": "Crystallomitin S-Lap1", "gene_name": "S-Lap1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A0C4FEI8-1", "protein_name": "Aminopeptidase grsm", "gene_name": "grsm", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P17336-1", "protein_name": "Catalase", "gene_name": "Cat", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "A1Z9G3-1", "protein_name": "Crystallomitin S-Lap5", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular basis for chromatin binding and regulation of MLL5.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013", "authors": "Ali M, Rincon-Arano H, Zhao W, Rothbart SB, Tong Q, Parkhurst SM, Strahl BD, Deng LW, Groudine M, Kutateladze TG", 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"Wnk kinases are positive regulators of canonical Wnt/beta-catenin signalling.", "journal": "EMBO reports", "date": "2013", "authors": "Serysheva E, Berhane H, Grumolato L, Demir K, Balmer S, Bodak M, Boutros M, Aaronson S, Mlodzik M, Jenny A", "reference": { "type": "PubMed", "id": "23797875", "url": "https://pubmed.ncbi.nlm.nih.gov/23797875" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "M9PGC5-1", "protein_name": "Serine/threonine-protein kinase Wnk", "gene_name": "Wnk", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "M9PGC5", "url": "https://www.uniprot.org/uniprotkb/M9PGC5" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "mutagenesis": [ { "start_pos": 618, "end_pos": 618, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of kinase activity.", "evidence": [ { "database": 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"Hypotonicity stimulates potassium flux through the WNK-SPAK/OSR1 kinase cascade and the Ncc69 sodium-potassium-2-chloride cotransporter in the Drosophila renal tubule.", "journal": "The Journal of biological chemistry", "date": "2014-09-19", "authors": "Wu Yipin, Schellinger Jeffrey N, Huang Chou-Long, Rodan Aylin R", "reference": { "type": "PubMed", "id": "25086033", "url": "https://pubmed.ncbi.nlm.nih.gov/25086033" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "M9PGC5-1", "protein_name": "Serine/threonine-protein kinase Wnk", "gene_name": "Wnk", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "M9PGC5", "url": "https://www.uniprot.org/uniprotkb/M9PGC5" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.25086033", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "WNKs are potassium-sensitive kinases.", "journal": "American journal of physiology. Cell physiology", "date": "2021", "authors": "Pleinis JM, Norrell L, Akella R, Humphreys JM, He H, Sun Q, Zhang F, Sosa-Pagan J, Morrison DE, Schellinger JN, Jackson LK, Goldsmith EJ, Rodan AR", "reference": { "type": "PubMed", "id": "33439774", "url": "https://pubmed.ncbi.nlm.nih.gov/33439774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "M9PGC5-1", "protein_name": "Serine/threonine-protein kinase Wnk", "gene_name": "Wnk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9JIH7-1", "protein_name": "Serine/threonine-protein kinase WNK1", "gene_name": "Wnk1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q80UE6-1", "protein_name": "Serine/threonine-protein kinase WNK4", "gene_name": "Wnk4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BYP7-1", "protein_name": "Serine/threonine-protein kinase WNK3", "gene_name": "WNK3", "tax_name": "Human" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": 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interaction during Drosophila development.", "journal": "Development (Cambridge, England)", "date": "2003", "authors": "Brown S, Hu N, Hombria JC", "reference": { "type": "PubMed", "id": "12783781", "url": "https://pubmed.ncbi.nlm.nih.gov/12783781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VWX2-1", "protein_name": "Unpaired 2", "gene_name": "upd2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24592-1", "protein_name": "Tyrosine-protein kinase hopscotch", "gene_name": "hop", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VWE0-1", "protein_name": "Cytokine receptor", "gene_name": "dome", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q59E38-1", "protein_name": "Unpaired 3", "gene_name": "upd3", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VWX2", "url": "https://www.uniprot.org/uniprotkb/Q9VWX2" } ], "common_name": "Fruit 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cell", "date": "2003", "authors": "Agaisse H, Petersen UM, Boutros M, Mathey-Prevot B, Perrimon N", "reference": { "type": "PubMed", "id": "12967563", "url": "https://pubmed.ncbi.nlm.nih.gov/12967563" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VWX2-1", "protein_name": "Unpaired 2", "gene_name": "upd2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8IN44-1", "protein_name": "Protein Turandot A", "gene_name": "TotA", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24592-1", "protein_name": "Tyrosine-protein kinase hopscotch", "gene_name": "hop", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VWE0-1", "protein_name": "Cytokine receptor", "gene_name": "dome", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q59E38-1", "protein_name": "Unpaired 3", "gene_name": "upd3", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VWX2", 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JAK/STAT pathway, unpaired2, is revealed by an in vivo reporter of pathway activation.", "journal": "Mechanisms of development", "date": "2005", "authors": "Gilbert MM, Weaver BK, Gergen JP, Reich NC", "reference": { "type": "PubMed", "id": "15925495", "url": "https://pubmed.ncbi.nlm.nih.gov/15925495" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VWX2-1", "protein_name": "Unpaired 2", "gene_name": "upd2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24592-1", "protein_name": "Tyrosine-protein kinase hopscotch", "gene_name": "hop", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VWE0-1", "protein_name": "Cytokine receptor", "gene_name": "dome", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q59E38-1", "protein_name": "Unpaired 3", "gene_name": "upd3", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VWX2", "url": 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components by genome-wide RNA interference.", "journal": "Nature", "date": "2005", "authors": "Muller P, Kuttenkeuler D, Gesellchen V, Zeidler MP, Boutros M", "reference": { "type": "PubMed", "id": "16094372", "url": "https://pubmed.ncbi.nlm.nih.gov/16094372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VWX2-1", "protein_name": "Unpaired 2", "gene_name": "upd2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24592-1", "protein_name": "Tyrosine-protein kinase hopscotch", "gene_name": "hop", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VWE0-1", "protein_name": "Cytokine receptor", "gene_name": "dome", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q59E38-1", "protein_name": "Unpaired 3", "gene_name": "upd3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24151-1", "protein_name": "Signal transducer and transcription activator", "gene_name": "Stat92E", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutational analysis reveals separable DNA binding and trans-activation of Drosophila STAT92E.", "journal": "Cellular signalling", "date": "2006", "authors": "Karsten P, Plischke I, Perrimon N, Zeidler MP", "reference": { "type": "PubMed", "id": "16129580", "url": "https://pubmed.ncbi.nlm.nih.gov/16129580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VWX2-1", "protein_name": "Unpaired 2", "gene_name": "upd2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24592-1", "protein_name": "Tyrosine-protein kinase hopscotch", "gene_name": "hop", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VWE0-1", "protein_name": "Cytokine receptor", "gene_name": "dome", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q59E38-1", "protein_name": "Unpaired 3", "gene_name": "upd3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24151-1", "protein_name": "Signal transducer and transcription 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterisation of Upd2, a Drosophila JAK/STAT pathway ligand.", "journal": "Developmental biology", "date": "2005", "authors": "Hombria JC, Brown S, Hader S, Zeidler MP", "reference": { "type": "PubMed", "id": "16277982", "url": "https://pubmed.ncbi.nlm.nih.gov/16277982" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9VWX2-1", "protein_name": "Unpaired 2", "gene_name": "upd2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24592-1", "protein_name": "Tyrosine-protein kinase hopscotch", "gene_name": "hop", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VWE0-1", "protein_name": "Cytokine receptor", "gene_name": "dome", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q59E38-1", "protein_name": "Unpaired 3", "gene_name": "upd3", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila 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"uniprot_canonical_ac": "Q59E38-1", "protein_name": "Unpaired 3", "gene_name": "upd3", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q9VWX2", "url": "https://www.uniprot.org/uniprotkb/Q9VWX2" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9620640", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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