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Immunol.", "date": "2012", "authors": "Chang Li-Kwan, Huang Ping-Han, Shen Wei-Tao, Yang Shu-Han, Liu Wang-Jing, Lo Chu-Fang", "reference": { "type": "PubMed", "id": "21740926", "url": "https://pubmed.ncbi.nlm.nih.gov/21740926" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5RIQ4-1", "protein_name": "Krueppel-like factor 11a", "gene_name": "klf11a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5RIQ4", "url": "https://www.uniprot.org/uniprotkb/Q5RIQ4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21740926", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Research resource: whole transcriptome RNA sequencing detects multiple 1alpha,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish.", "journal": "Mol. Endocrinol.", "date": "2012", "authors": "Craig Theodore A, Zhang Yuji, McNulty Melissa S, Middha Sumit, Ketha Hemamalini, Singh Ravinder J, Magis Andrew T, Funk Cory, Price Nathan D, Ekker Stephen C, Kumar Rajiv", "reference": { "type": "PubMed", "id": "22734042", "url": "https://pubmed.ncbi.nlm.nih.gov/22734042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5RIQ4-1", "protein_name": "Krueppel-like factor 11a", "gene_name": "klf11a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5RIQ4", "url": "https://www.uniprot.org/uniprotkb/Q5RIQ4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22734042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Interleukin-17D in Atlantic salmon (Salmo salar): molecular characterization, 3D modelling and promoter analysis.", "journal": "Fish Shellfish Immunol.", "date": "2009", "authors": "Kumari Jaya, Larsen Atle Noralf, Bogwald Jarl, Dalmo Roy A", "reference": { "type": "PubMed", "id": "19716422", "url": "https://pubmed.ncbi.nlm.nih.gov/19716422" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TKT2-1", "protein_name": "Interleukin-17C precursor", "gene_name": "il17c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TKT4-1", "protein_name": "Interleukin 17a/f1 precursor", "gene_name": "f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TKT3-1", "protein_name": "Interleukin 17a/f2 precursor", "gene_name": "f2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5TKT2", "url": 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Comp. Immunol.", "date": "2011", "authors": "Oehlers Stefan H, Flores Maria Vega, Chen Tony, Hall Chris J, Crosier Kathryn E, Crosier Philip S", "reference": { "type": "PubMed", "id": "21093479", "url": "https://pubmed.ncbi.nlm.nih.gov/21093479" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TKT2-1", "protein_name": "Interleukin-17C precursor", "gene_name": "il17c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TKT4-1", "protein_name": "Interleukin 17a/f1 precursor", "gene_name": "f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NBV9-1", "protein_name": "Beta-defensin-like 2 precursor", "gene_name": "defbl2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5TKT2", "url": "https://www.uniprot.org/uniprotkb/Q5TKT2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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Chieh-Yu, Wu Jen-Leih, Hui Cho-Fat, Lin Cheng-Hui, Chen Jyh-Yih", "reference": { "type": "PubMed", "id": "21925271", "url": "https://pubmed.ncbi.nlm.nih.gov/21925271" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TKT2-1", "protein_name": "Interleukin-17C precursor", "gene_name": "il17c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QW97-1", "protein_name": "Transcription factor Sp1", "gene_name": "sp1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5TKT2", "url": "https://www.uniprot.org/uniprotkb/Q5TKT2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21925271", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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Basis Dis.", "date": "2021", "authors": "Cui X, Du C, Wan S, Wu D, Yan L, Zhang J, Li J, Li H, Yang Z, Zhang H, Zhang J, Mu H, Zhang F, Peng X, Liu M, Hu Y", "reference": { "type": "PubMed", "id": "34339841", "url": "https://pubmed.ncbi.nlm.nih.gov/34339841" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TKT4-1", "protein_name": "Interleukin 17a/f1 precursor", "gene_name": "f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9R0L1-1", "protein_name": "Heat shock factor protein 4", "gene_name": "Hsf4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5CZP2-1", "protein_name": "Heat shock factor protein 4", "gene_name": "hsf4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5TKT4", "url": "https://www.uniprot.org/uniprotkb/Q5TKT4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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Covacu Ruxandra, Queva Hugo, Fonseca-Castro Pedro Henrique, Bladi Maha Al, Cox Laura M, Hodgetts Kevin J, Hahn Mark E, Mildner Alexander, Korzenik Joshua, Hauser Russ, Snapper Scott B, Quintana Francisco J", "reference": { "type": "PubMed", "id": "36266581", "url": "https://pubmed.ncbi.nlm.nih.gov/36266581" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TKT4-1", "protein_name": "Interleukin 17a/f1 precursor", "gene_name": "f1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5TKT4", "url": "https://www.uniprot.org/uniprotkb/Q5TKT4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36266581", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Mol. Med.", "date": "2022", "authors": "Chen Xiang-Ke, Kwan Joseph Shiu-Kwong, Wong Gordon Tin-Chun, Yi Zhen-Ni, Ma Alvin Chun-Hang, Chang Raymond Chuen-Chung", "reference": { "type": "PubMed", "id": "35831435", "url": "https://pubmed.ncbi.nlm.nih.gov/35831435" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TYQ0-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38a.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QK93-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 1", "gene_name": "psmd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WFI9-1", "protein_name": "High mobility group protein B1b", "gene_name": "hmgb1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B3R9-1", "protein_name": "Apoptosis inducing factor mitochondria associated 4", "gene_name": "aifm4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5TYQ0", "url": "https://www.uniprot.org/uniprotkb/Q5TYQ0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35831435", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tibetan medicine salidroside improves host anti-mycobacterial response by boosting inflammatory cytokine production in zebrafish.", "journal": "Front. Pharmacol.", "date": "2022", "authors": "He Shumei, Fan Hongyan, Sun Bin, Yang Meipan, Liu Hongxu, Yang Jianwei, Liu Jianxin, Luo Sizhu, Chen Zihan, Zhou Jing, Xia Lu, Zhang Shulin, Yan Bo", "reference": { "type": "PubMed", "id": "36120339", "url": "https://pubmed.ncbi.nlm.nih.gov/36120339" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TYQ0-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38a.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4INB9-1", "protein_name": "C-X-C motif chemokine 11-1", "gene_name": "cxcl11.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5TYQ0", "url": "https://www.uniprot.org/uniprotkb/Q5TYQ0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36120339", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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three-spined stickleback fabp2a and fabp2b genes with fabp2 of zebrafish.", "journal": "Genome", "date": "2013", "authors": "Parmar Manoj B, Wright Jonathan M", "reference": { "type": "PubMed", "id": "23379336", "url": "https://pubmed.ncbi.nlm.nih.gov/23379336" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5XJA2-1", "protein_name": "Coiled-coil domain-containing protein 149-A", "gene_name": "ccdc149a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DH86-1", "protein_name": "Coiled-coil domain-containing protein 149-B", "gene_name": "ccdc149b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5XJA2", "url": "https://www.uniprot.org/uniprotkb/Q5XJA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23379336", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Commun.", "date": "2023", "authors": "Kim Jeonghyun, Kim Bo-Young, Lee Jeong-Soo, Jeong Yun-Mi, Cho Hyun-Ju, Park Eunkuk, Kim Dowan, Kim Sung-Soo, Kim Bom-Taeck, Choi Yong Jun, Won Ye-Yeon, Jin Hyun-Seok, Chung Yoon-Sok, Jeong Seon-Yong", "reference": { "type": "PubMed", "id": "37339951", "url": "https://pubmed.ncbi.nlm.nih.gov/37339951" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M6Z3P0-1", "protein_name": "Ubiquitin-associated protein 2a isoform X1", "gene_name": "ubap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91VX2-1", "protein_name": "Ubiquitin-associated protein 2", "gene_name": "Ubap2", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M6Z3P0", "url": "https://www.uniprot.org/uniprotkb/A0A8M6Z3P0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37339951", 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Methods", "date": "2012", "authors": "Gupta Ankit, Christensen Ryan G, Rayla Amy L, Lakshmanan Abirami, Stormo Gary D, Wolfe Scot A", "reference": { "type": "PubMed", "id": "22543349", "url": "https://pubmed.ncbi.nlm.nih.gov/22543349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A5PF31-1", "protein_name": "DAB2 interacting protein b isoform X1", "gene_name": "dab2ipb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TVW1-1", "protein_name": "Leptin receptor isoform X1", "gene_name": "lepr", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A5PF31", "url": "https://www.uniprot.org/uniprotkb/A5PF31" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22543349", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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[] } ] }, { "title": "son is necessary for proper vertebrate blood development.", "journal": "PloS one", "date": "2021", "authors": "Belmonte Rebecca L, Engbretson Isabella L, Kim Jung-Hyun, Cajias Illiana, Ahn Eun-Young Erin, Stachura David L", "reference": { "type": "PubMed", "id": "33630943", "url": "https://pubmed.ncbi.nlm.nih.gov/33630943" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8N7UR74-1", "protein_name": "Protein SON isoform X1", "gene_name": "sonb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8N7UR74", "url": "https://www.uniprot.org/uniprotkb/A0A8N7UR74" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33630943", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Rep.", "date": "2019", "authors": "Park Ki-Hoon, Ye Zhi-Wei, Zhang Jie, Hammad Samar M, Townsend Danyelle M, Rockey Don C, Kim Seok-Hyung", "reference": { "type": "PubMed", "id": "30718751", "url": "https://pubmed.ncbi.nlm.nih.gov/30718751" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AAR9J7U1-1", "protein_name": "3-dehydrosphinganine reductase", "gene_name": "kdsr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QWW8-1", "protein_name": "3-dehydrosphinganine reductase", "gene_name": "kdsr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NTA0-1", "protein_name": "Thioredoxin-like protein 1", "gene_name": "txnl1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P933-1", "protein_name": "Sphingomyelin phosphodiesterase", "gene_name": "smpd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AAR9J7U1", "url": "https://www.uniprot.org/uniprotkb/A0AAR9J7U1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 105, "end_pos": 105, "sequence_org": "I", "sequence_mut": "R", "comment": "Mutants develop progressive liver injury and mitochondrial cristae defects and die 8-10 days post fertilization. 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Syndromol.", "date": "2016", "authors": "Spiegler Stefanie, Kirchmaier Bettina, Rath Matthias, Korenke G Christoph, Tetzlaff Fabian, van de Vorst Maartje, Neveling Kornelia, Acker-Palmer Amparo, Kuss Andreas W, Gilissen Christian, Fischer Andreas, Schulte-Merker Stefan, Felbor Ute", "reference": { "type": "PubMed", "id": "27587990", "url": "https://pubmed.ncbi.nlm.nih.gov/27587990" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PK94-1", "protein_name": "Uncharacterized protein LOC561123; Uncharacterized protein isoform X1", "gene_name": "fam222ba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PK94", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PK94" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27587990", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conservation of novel Mahya genes shows the existence of neural functions common between Hymenoptera and Deuterostome.", "journal": "Dev. Genes Evol.", "date": "2005", "authors": "Tsuchimoto Mayumi, Yasuo Shinobu, Funada Masahiro, Aoki Makoto, Sasagawa Hiromi, Yoshimura Takashi, Tadauchi Osamu, Cameron Sydney A, Kitagawa Yasuo, Kadowaki Tatsuhiko", "reference": { "type": "PubMed", "id": "16193321", "url": "https://pubmed.ncbi.nlm.nih.gov/16193321" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PQK6-1", "protein_name": "Follistatin-related protein 4 isoform X1; Follistatin-related protein 4 precursor", "gene_name": "fstl4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PQK6", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PQK6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16193321", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RING finger protein 121 facilitates the degradation and membrane localization of voltage-gated sodium channels.", "journal": "Proc. 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Commun.", "date": "2024", "authors": "Zhou Ru, Cui Wei, Zeng Ni, Su Baochun, Chen Yayue, Shi Hui, Zhao Shuyi", "reference": { "type": "PubMed", "id": "38564939", "url": "https://pubmed.ncbi.nlm.nih.gov/38564939" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8N7UZA2-1", "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 2", "gene_name": "dnttip2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8N7UZA2", "url": "https://www.uniprot.org/uniprotkb/A0A8N7UZA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38564939", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Immunol.", "date": "2012", "authors": "Xiong Ran, Nie Li, Xiang Li-xin, Shao Jian-zhong", "reference": { "type": "PubMed", "id": "22345667", "url": "https://pubmed.ncbi.nlm.nih.gov/22345667" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2BHB8-1", "protein_name": "Ubiquitin-like protein ISG15", "gene_name": "isg15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W4B9-1", "protein_name": "E3 SUMO-protein ligase PIAS4b isoform 1", "gene_name": "pias4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R4C4-1", "protein_name": "E3 SUMO-protein ligase PIAS4-A", "gene_name": "pias4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BCP8-1", "protein_name": "E3 SUMO-protein ligase PIAS2 isoform X1", "gene_name": "pias2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A2BHB8", "url": "https://www.uniprot.org/uniprotkb/A2BHB8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22345667", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct features of the regenerating heart uncovered through comparative single-cell profiling.", "journal": "Biol. 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Comp. Endocrinol.", "date": "2015", "authors": "Fern\u00e1ndez J A, Bubner E J, Takeuchi Y, Yoshizaki G, Wang T, Cummins S F, Elizur A", "reference": { "type": "PubMed", "id": "25708429", "url": "https://pubmed.ncbi.nlm.nih.gov/25708429" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2BIR7-1", "protein_name": "Stromal cell-derived factor 2-like protein 1 precursor", "gene_name": "sdf2l1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A2BIR7", "url": "https://www.uniprot.org/uniprotkb/A2BIR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25708429", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Examining the liver-pancreas crosstalk reveals a role for the molybdenum cofactor in beta-cell regeneration.", "journal": "Life. Sci Alliance", "date": "2024", "authors": "Karampelias Christos, B\u0103loiu Bianca, Rathkolb Birgit, da Silva-Buttkus Patricia, Bachar-Wikstr\u00f6m Etty, Marschall Susan, Fuchs Helmut, Gailus-Durner Valerie, Chu Lianhe, Hrab\u011b de Angelis Martin, Andersson Olov", "reference": { "type": "PubMed", "id": "39159974", "url": "https://pubmed.ncbi.nlm.nih.gov/39159974" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2BIR7-1", "protein_name": "Stromal cell-derived factor 2-like protein 1 precursor", "gene_name": "sdf2l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKF7-1", "protein_name": "Sulfite oxidase, mitochondrial", "gene_name": "suox", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E857-1", "protein_name": "E3 ubiquitin-protein ligase RNF182", "gene_name": "rnf182", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N1J9-1", "protein_name": "Glucose-6-phosphatase", "gene_name": "g6pc1a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AJ79-1", "protein_name": "Molybdenum cofactor biosynthesis protein 1", "gene_name": "mocs1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A2BIR7", "url": "https://www.uniprot.org/uniprotkb/A2BIR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39159974", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Quantitative Proteomics Analysis Reveals Novel Targets of miR-21 in Zebrafish Embryos.", "journal": "Sci. Rep.", "date": "2017", "authors": "Wu Ying, Lou Qi-Yong, Ge Feng, Xiong Qian", "reference": { "type": "PubMed", "id": "28642470", "url": "https://pubmed.ncbi.nlm.nih.gov/28642470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2CEA9-1", "protein_name": "BRI3-binding protein precursor", "gene_name": "bri3bp", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A2CEA9", "url": "https://www.uniprot.org/uniprotkb/A2CEA9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28642470", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Ozes B, Karaca E, Jhangiani SN, Bainbridge MN, Lawson KS, Pehlivan D, Okamoto Y, Withers M, Mancias P, Slavotinek A, Reitnauer PJ, Goksungur MT, Shy M, Crawford TO, Koenig M, Willer J, Flores BN, Pediaditrakis I, Us O, Wiszniewski W, Parman Y, Antonellis A, Muzny DM, Katsanis N, Battaloglu E, Boerwinkle E, Gibbs RA, Lupski JR", "reference": { "type": "PubMed", "id": "26257172", "url": "https://pubmed.ncbi.nlm.nih.gov/26257172" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A5WUU0-1", "protein_name": "DnaJ homolog subfamily B member 5", "gene_name": "dnajb5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P2G9-1", "protein_name": "Ankyrin repeat domain-containing protein 6b isoform X1", "gene_name": "ankrd6b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9Q9N3-1", "protein_name": "serine C-palmitoyltransferase", "gene_name": "sptlc3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P02689-1", "protein_name": "Myelin P2 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Genet. 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Chem. Neuroanat.", "date": "2015", "authors": "Teoh Seong Lin, Ogawa Satoshi, Parhar Ishwar S", "reference": { "type": "PubMed", "id": "26571427", "url": "https://pubmed.ncbi.nlm.nih.gov/26571427" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A5WVQ9-1", "protein_name": "Sodium-coupled neutral amino acid transporter 8a", "gene_name": "slc38a8a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A5WVQ9", "url": "https://www.uniprot.org/uniprotkb/A5WVQ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26571427", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional diversification in the teleost S100 family of calcium-binding proteins.", "journal": "BMC Evol. Biol.", "date": "2008", "authors": "Kraemer Andreas M, Saraiva Luis R, Korsching Sigrun I", "reference": { "type": "PubMed", "id": "18275604", "url": "https://pubmed.ncbi.nlm.nih.gov/18275604" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A5WW28-1", "protein_name": "Protein S100-A11", "gene_name": "s100a11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9Y8-1", "protein_name": "S100 calcium binding protein V1", "gene_name": "s100v1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4R7-1", "protein_name": "Protein S100", "gene_name": "s100t", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WW31-1", "protein_name": "S100 calcium binding protein U", "gene_name": "s100u", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WW32-1", "protein_name": "Protein S100", "gene_name": "s100s", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q503K9-1", "protein_name": "Protein S100-Z", "gene_name": "s100z", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVA0-1", "protein_name": "S100 calcium binding protein W", "gene_name": "s100w", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A5WW28", "url": "https://www.uniprot.org/uniprotkb/A5WW28" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18275604", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Possible molecular mechanism underlying cadmium-induced circadian rhythms disruption in zebrafish.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2016", "authors": "Xiao Bo, Chen Tian-Ming, Zhong Yingbin", "reference": { "type": "PubMed", "id": "27784643", "url": "https://pubmed.ncbi.nlm.nih.gov/27784643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A5WW28-1", "protein_name": "Protein S100-A11", "gene_name": "s100a11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRA3-1", "protein_name": "Odorant receptor 125-4", "gene_name": "or62b3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRI3-1", "protein_name": "Odorant receptor 115-11", "gene_name": "or70a11", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A5WW28", "url": "https://www.uniprot.org/uniprotkb/A5WW28" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27784643", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metabolic disruption of zebrafish (Danio rerio) embryos by bisphenol A. An integrated metabolomic and transcriptomic approach.", "journal": "Environ. Pollut.", "date": "2017", "authors": "Ortiz-Villanueva Elena, Navarro-Mart\u00edn Laia, Jaumot Joaquim, Benavente Fernando, Sanz-Nebot Victoria, Pi\u00f1a Benjam\u00edn, Tauler Rom\u00e0", "reference": { "type": "PubMed", "id": "28780062", "url": "https://pubmed.ncbi.nlm.nih.gov/28780062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A5WW28-1", "protein_name": "Protein S100-A11", "gene_name": "s100a11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNN6-1", "protein_name": "Uncharacterized protein LOC562950", "gene_name": "si:dkey-7c18.24", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QC84-1", "protein_name": "Coagulation factor XIII, A1 polypeptide a, tandem duplicate 1", "gene_name": "f13a1a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWI5-1", "protein_name": "Alpha-2-HS-glycoprotein 2", "gene_name": "ahsg2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { 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J. Mol. 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel hepatic lectin of zebrafish Danio rerio is involved in innate immune defense.", "journal": "Fish Shellfish Immunol.", "date": "2020", "authors": "Yang Qingyun, Wang Peng, Yang Shuaiqi, Li Xianpeng, Zhang Xiangmin, Ji Guangdong, Zhang Shicui, Wang Su, Li Hongyan", "reference": { "type": "PubMed", "id": "31689552", "url": "https://pubmed.ncbi.nlm.nih.gov/31689552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A9C461-1", "protein_name": "Asialoglycoprotein 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Transl. Med.", "date": "2020", "authors": "Wu Szu-Yuan, Yang Wan-Yu, Cheng Chun-Chia, Lin Kuan-Hao, Sampurna Bonifasius Putera, Chan Suat-Ming, Yuh Chiou-Hwa", "reference": { "type": "PubMed", "id": "33377648", "url": "https://pubmed.ncbi.nlm.nih.gov/33377648" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A9C461-1", "protein_name": "Asialoglycoprotein receptor-like 1", "gene_name": "asgrl1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJN9-1", "protein_name": "Carboxypeptidase B", "gene_name": "cpb1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVP9-1", "protein_name": "Heparanase", "gene_name": "hpse", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PN43-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase delta", "gene_name": "agpat4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A9C461", "url": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Therapeutic Silencing of Centromere Protein X Ameliorates Hyperglycemia in Zebrafish and Mouse Models of Type 2 Diabetes Mellitus.", "journal": "Front. Genet.", "date": "2019", "authors": "Zang Liqing, Shimada Yasuhito, Nakayama Hiroko, Chen Wenbiao, Okamoto Ayaka, Koide Hiroyuki, Oku Naoto, Dewa Takehisa, Shiota Masayuki, Nishimura Norihiro", "reference": { "type": "PubMed", "id": "31417608", "url": "https://pubmed.ncbi.nlm.nih.gov/31417608" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8N0-1", "protein_name": "1.1.1.184; Dehydrogenase/reductase SDR family member 4", "gene_name": "dhrs4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1X6-1", "protein_name": "Centromere protein X", "gene_name": "cenpx", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8N0", "url": "https://www.uniprot.org/uniprotkb/F1Q8N0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31417608", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish Nkd1 promotes Dvl degradation and is required for left-right patterning.", "journal": "Dev. Biol.", "date": "2010", "authors": "Schneider Igor, Schneider Patricia N, Derry Sarah W, Lin Shengda, Barton Lacy J, Westfall Trudi, Slusarski Diane C", "reference": { "type": "PubMed", "id": "20858476", "url": "https://pubmed.ncbi.nlm.nih.gov/20858476" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F1Y9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC100330546; LOC100500933; LOC796282; nkd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2TJA6-1", "protein_name": "Protein naked cuticle homolog 1", "gene_name": "nkd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F1Y9", "url": "https://www.uniprot.org/uniprotkb/E7F1Y9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20858476", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Nkd EF-hand domain modulates divergent wnt signaling outputs in zebrafish.", "journal": "Dev. Biol.", "date": "2018", "authors": "Marsden Autumn N, Derry Sarah W, Schneider Igor, Scott C Anthony, Westfall Trudi A, Brastrom Lindy K, Shea Madeline A, Dawson Deborah V, Slusarski Diane C", "reference": { "type": "PubMed", "id": "29180104", "url": "https://pubmed.ncbi.nlm.nih.gov/29180104" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F1Y9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC100330546; LOC100500933; LOC796282; nkd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2TJA6-1", "protein_name": "Protein naked cuticle homolog 1", "gene_name": "nkd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LU88-1", "protein_name": "NKD inhibitor of WNT signaling pathway 3, like", "gene_name": "nkd3l", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F1Y9", "url": "https://www.uniprot.org/uniprotkb/E7F1Y9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29180104", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptomic analysis of zebrafish (Danio rerio) embryos to assess integrated biotoxicity of Xitiaoxi River waters.", "journal": "Environ. Pollut.", "date": "2018", "authors": "Zhou Shengli, Wei Zheng, Chu Tianyi, Yu Haiyan, Li Shuying, Zhang Wei, Gui Wenjun", "reference": { "type": "PubMed", "id": "29958174", "url": "https://pubmed.ncbi.nlm.nih.gov/29958174" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E7F1Y9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC100330546; LOC100500933; LOC796282; nkd3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E7F1Y9", "url": "https://www.uniprot.org/uniprotkb/E7F1Y9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29958174", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Impact of functional studies on exome sequence variant interpretation in early-onset cardiac conduction system diseases.", "journal": "Cardiovasc. Res.", "date": "2020", "authors": "Hayashi Kenshi, Teramoto Ryota, Nomura Akihiro, Asano Yoshihiro, Beerens Manu, Kurata Yasutaka, Kobayashi Isao, Fujino Noboru, Furusho Hiroshi, Sakata Kenji, Onoue Kenji, Chiang David Y, Kiviniemi Tuomas O, Buys Eva, Sips Patrick, Burch Micah L, Zhao Yanbin, Kelly Amy E, Namura Masanobu, Kita Yoshihito, Tsuchiya Taketsugu, Kaku Bunji, Oe Kotaro, Takeda Yuko, Konno Tetsuo, Inoue Masaru, Fujita Takashi, Kato Takeshi, Funada Akira, Tada Hayato, Hodatsu Akihiko, Nakanishi Chiaki, Sakamoto Yuichiro, Tsuda Toyonobu, Nagata Yoji, Tanaka Yoshihiro, Okada Hirofumi, Usuda Keisuke, Cui Shihe, Saito Yoshihiko, MacRae Calum A, Takashima Seiji, Yamagishi Masakazu, Kawashiri Masa-Aki, Takamura Masayuki", "reference": { "type": "PubMed", "id": "31977013", "url": "https://pubmed.ncbi.nlm.nih.gov/31977013" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9QIK0-1", "protein_name": "Emerin (Emery-Dreifuss muscular dystrophy) isoform 1", 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