[ { "title": "In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.", "journal": "Plant physiology", "date": "2004-12", "authors": "Van Damme Dani\u00ebl, Van Poucke Kris, Boutant Emmanuel, Ritzenthaler Christophe, Inz\u00e9 Dirk, Geelen Danny", "reference": { "type": "PubMed", "id": "15557096", "url": "https://pubmed.ncbi.nlm.nih.gov/15557096" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVJ3-1", "protein_name": "65-kDa microtubule-associated protein 5", "gene_name": "MAP65-5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZY0-1", "protein_name": "65-kDa microtubule-associated protein 4", "gene_name": "MAP65-4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLP0-1", "protein_name": "65-kDa microtubule-associated protein 1", "gene_name": "MAP65-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", 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microtubule-associated proteins of Arabidopsis MAP65s promote antiparallel microtubule bundling.", "journal": "Molecular biology of the cell", "date": "2008-10", "authors": "Gaillard J\u00e9r\u00e9mie, Neumann Emmanuelle, Van Damme Daniel, Stoppin-Mellet Virginie, Ebel Christine, Barbier Elodie, Geelen Danny, Vantard Marylin", "reference": { "type": "PubMed", "id": "18667529", "url": "https://pubmed.ncbi.nlm.nih.gov/18667529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVJ3-1", "protein_name": "65-kDa microtubule-associated protein 5", "gene_name": "MAP65-5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLP0-1", "protein_name": "65-kDa microtubule-associated protein 1", "gene_name": "MAP65-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ3", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ3" } ], "common_name": "Mouse-ear 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isotypes.", "journal": "Plant Cell", "date": "2008", "authors": "Smertenko Andrei P, Kaloriti Despina, Chang Hsin-Yu, Fiserova Jindriska, Opatrny Zdenek, Hussey Patrick J", "reference": { "type": "PubMed", "id": "19060108", "url": "https://pubmed.ncbi.nlm.nih.gov/19060108" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVJ3-1", "protein_name": "65-kDa microtubule-associated protein 5", "gene_name": "MAP65-5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZY0-1", "protein_name": "65-kDa microtubule-associated protein 4", "gene_name": "MAP65-4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLP0-1", "protein_name": "65-kDa microtubule-associated protein 1", "gene_name": "MAP65-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHM4-1", "protein_name": "65-kDa microtubule-associated protein 3", "gene_name": "MAP65-3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIS3-1", "protein_name": 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chloroplasts of Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Lippold Felix, vom Dorp Katharina, Abraham Marion, H\u00f6lzl Georg, Wewer Vera, Yilmaz Jenny Lindberg, Lager Ida, Montandon Cyrille, Besagni C\u00e9line, Kessler Felix, Stymne Sten, D\u00f6rmann Peter", "reference": { "type": "PubMed", "id": "22623494", "url": "https://pubmed.ncbi.nlm.nih.gov/22623494" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVN2-1", "protein_name": "Phytyl ester synthase 1, chloroplastic", "gene_name": "PES1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LW26-1", "protein_name": "Phytyl ester synthase 2, chloroplastic", "gene_name": "PES2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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"authors": "Bhuiyan Nazmul H, Friso Giulia, Rowland Elden, Majsec Kristina, van Wijk Klaas J", "reference": { "type": "PubMed", "id": "27895226", "url": "https://pubmed.ncbi.nlm.nih.gov/27895226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVN2-1", "protein_name": "Phytyl ester synthase 1, chloroplastic", "gene_name": "PES1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA15-1", "protein_name": "Protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic", "gene_name": "ABC1K3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49675-1", "protein_name": "Probable carotenoid cleavage dioxygenase 4, chloroplastic", "gene_name": "CCD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSC4-1", "protein_name": "Plastoglobule-localized metallopeptidase 48, chloroplastic", "gene_name": "PGM48", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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{ "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"Functions and substrates of plastoglobule-localized metallopeptidase PGM48.", "journal": "Plant Signal. Behav.", "date": "2017", "authors": "Bhuiyan Nazmul H, van Wijk Klaas J", "reference": { "type": "PubMed", "id": "28534654", "url": "https://pubmed.ncbi.nlm.nih.gov/28534654" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVN2-1", "protein_name": "Phytyl ester synthase 1, chloroplastic", "gene_name": "PES1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49675-1", "protein_name": "Probable carotenoid cleavage dioxygenase 4, chloroplastic", "gene_name": "CCD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSC4-1", "protein_name": "Plastoglobule-localized metallopeptidase 48, chloroplastic", "gene_name": "PGM48", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28534654", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.", "journal": "New Phytol.", "date": "2018", "authors": "Kamranfar Iman, Xue Gang-Ping, Tohge Takayuki, Sedaghatmehr Mastoureh, Fernie Alisdair R, Balazadeh Salma, Mueller-Roeber Bernd", "reference": { "type": "PubMed", "id": "29659022", "url": "https://pubmed.ncbi.nlm.nih.gov/29659022" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVN2-1", "protein_name": "Phytyl ester synthase 1, chloroplastic", "gene_name": "PES1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94CI7-1", "protein_name": "Sugar transporter ERD6-like 17", "gene_name": "SFP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8K8-1", "protein_name": "Protein CHLOROPLAST VESICULATION", "gene_name": "CV", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ56-1", "protein_name": "Alpha-amylase 1", "gene_name": "AMY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VY3-1", "protein_name": "NAC domain-containing protein 72", "gene_name": "NAC072; RD26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FY94-1", "protein_name": "Bidirectional sugar transporter SWEET15", "gene_name": "SWEET15", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.29659022", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT7", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11809881", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.", "journal": "Cell", "date": "2007-12-28", "authors": "Chekanova Julia A, Gregory Brian D, Reverdatto Sergei V, Chen Huaming, Kumar Ravi, Hooker Tanya, Yazaki Junshi, Li Pinghua, Skiba Nikolai, Peng Qian, Alonso Jose, Brukhin Vladimir, Grossniklaus Ueli, Ecker Joseph R, Belostotsky Dmitry A", "reference": { "type": "PubMed", "id": "18160042", "url": "https://pubmed.ncbi.nlm.nih.gov/18160042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVT7-1", "protein_name": "Exosome complex component RRP4 homolog", "gene_name": "RRP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SP08-1", "protein_name": "Exosome complex component RRP41 homolog", "gene_name": "RRP41", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT7", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18160042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HUA ENHANCER2, a putative DExH-box RNA helicase, maintains homeotic B and C gene expression in Arabidopsis.", "journal": "Development (Cambridge, England)", "date": "2002-04", "authors": "Western Tamara L, Cheng Yulan, Liu Jun, Chen Xuemei", "reference": { "type": "PubMed", "id": "11923195", "url": "https://pubmed.ncbi.nlm.nih.gov/11923195" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVW2-1", "protein_name": "DExH-box ATP-dependent RNA helicase DExH10", "gene_name": "HEN2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVW2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVW2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11923195", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis SET-domain protein ASHR3 is involved in stamen development and interacts with the bHLH transcription factor ABORTED MICROSPORES (AMS).", "journal": "Plant Mol. Biol.", "date": "2008", "authors": "Thorstensen Tage, Grini Paul E, Mercy Inderjit S, Alm Vibeke, Erdal Sigrid, Aasland Rein, Aalen Reidunn B", "reference": { "type": "PubMed", "id": "17978851", "url": "https://pubmed.ncbi.nlm.nih.gov/17978851" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZVX2-1", "protein_name": "Transcription factor ABORTED MICROSPORES", "gene_name": "AMS", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q949T8-1", "protein_name": "Histone-lysine N-methyltransferase ASHR3", "gene_name": "ASHR3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVX2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVX2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17978851", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A comparison of the expression patterns of several senescence-associated genes in response to stress and hormone treatment.", "journal": "Plant Mol. Biol.", "date": "1998", "authors": "Weaver L M, Gan S, Quirino B, Amasino R M", "reference": { "type": "PubMed", "id": "9617813", "url": "https://pubmed.ncbi.nlm.nih.gov/9617813" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZW18-1", "protein_name": "Senescence-associated protein 13", "gene_name": "SAG13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AK6-1", "protein_name": "Senescence associated gene 20", "gene_name": "SAG20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H166-1", "protein_name": "Thiol protease aleurain", "gene_name": "ALEU; ALP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WF6-1", "protein_name": "Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial", "gene_name": "SAG21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJ47-1", "protein_name": "Senescence-specific cysteine protease SAG12", "gene_name": "SAG12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW18", "url": "https://www.uniprot.org/uniprotkb/Q9ZW18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9617813", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional identification of sterol-4alpha-methyl oxidase cDNAs from Arabidopsis thaliana by complementation of a yeast erg25 mutant lacking sterol-4alpha-methyl oxidation.", "journal": "FEBS letters", "date": "2001-11-09", "authors": "Darnet S, Bard M, Rahier A", "reference": { "type": "PubMed", "id": "11707264", "url": "https://pubmed.ncbi.nlm.nih.gov/11707264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZW22-1", "protein_name": "Methylsterol monooxygenase 2-1", "gene_name": "SMO2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWZ8-1", "protein_name": "Methylsterol monooxygenase 2-2", "gene_name": "SMO2-2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW22", "url": "https://www.uniprot.org/uniprotkb/Q9ZW22" } ], "common_name": "Mouse-ear cress", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Plant sterol biosynthesis: identification of two distinct families of sterol 4alpha-methyl oxidases.", "journal": 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J.", "date": "2004", "authors": "Darnet Sylvain, Rahier Alain", "reference": { "type": "PubMed", "id": "14653780", "url": "https://pubmed.ncbi.nlm.nih.gov/14653780" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZW22-1", "protein_name": "Methylsterol monooxygenase 2-1", "gene_name": "SMO2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7W5-1", "protein_name": "Methylsterol monooxygenase 1-1", "gene_name": "SMO1-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWZ8-1", "protein_name": "Methylsterol monooxygenase 2-2", "gene_name": "SMO2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1EC69-1", "protein_name": "Methylsterol monooxygenase 1-2", "gene_name": "SMO1-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLZ6-1", "protein_name": "Methylsterol monooxygenase 1-3", "gene_name": "SMO1-3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW22", "url": "https://www.uniprot.org/uniprotkb/Q9ZW22" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14653780", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Sterol Methyl Oxidases Affect Embryo Development via Auxin-Associated Mechanisms.", "journal": "Plant physiology", "date": "2016-05", "authors": "Zhang Xia, Sun Shuangli, Nie Xiang, Boutt\u00e9 Yohann, Grison Magali, Li Panpan, Kuang Susu, Men Shuzhen", "reference": { "type": "PubMed", "id": "27006488", "url": "https://pubmed.ncbi.nlm.nih.gov/27006488" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZW22-1", "protein_name": "Methylsterol monooxygenase 2-1", "gene_name": "SMO2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWZ8-1", "protein_name": "Methylsterol monooxygenase 2-2", "gene_name": "SMO2-2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW22", "url": "https://www.uniprot.org/uniprotkb/Q9ZW22" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Systematic studies of 12S seed storage protein accumulation and degradation patterns during Arabidopsis seed maturation and early seedling germination stages.", "journal": "J. Biochem. Mol. Biol.", "date": "2007", "authors": "Li Qing, Wang Bai-Chen, Xu Yu, Zhu Yu-Xian", "reference": { "type": "PubMed", "id": "17562289", "url": "https://pubmed.ncbi.nlm.nih.gov/17562289" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZWA9-1", "protein_name": "12S seed storage protein CRD", "gene_name": "CRD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96318-1", "protein_name": "12S seed storage protein CRC", "gene_name": "CRC; CRU3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P15455-1", "protein_name": "12S seed storage protein CRA1", "gene_name": "CRA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P15456-1", "protein_name": "12S seed storage protein CRB", "gene_name": "CRB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZWA9", "url": "https://www.uniprot.org/uniprotkb/Q9ZWA9" } ], "common_name": 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threonine, and tyrosine.", "journal": "The Journal of biological chemistry", "date": "1994-12-16", "authors": "Ali N, Halfter U, Chua N H", "reference": { "type": "PubMed", "id": "7527390", "url": "https://pubmed.ncbi.nlm.nih.gov/7527390" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZWB3-1", "protein_name": "Casein kinase 1-like protein 9", "gene_name": "CKL9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZWB3", "url": "https://www.uniprot.org/uniprotkb/Q9ZWB3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7527390", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants.", "journal": "Nucleic acids research", "date": "1999-01-15", "authors": "Kagaya Y, Ohmiya K, Hattori T", "reference": { "type": "PubMed", "id": "9862967", "url": "https://pubmed.ncbi.nlm.nih.gov/9862967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZWM9-1", "protein_name": "AP2/ERF and B3 domain-containing transcription factor RAV1", "gene_name": "RAV1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P82280-1", "protein_name": "AP2/ERF and B3 domain-containing transcription repressor RAV2", "gene_name": "RAV2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZWM9", "url": "https://www.uniprot.org/uniprotkb/Q9ZWM9" } ], "common_name": 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Mitochondria of Arabidopsis.", "journal": "Plant physiology", "date": "2014-07", "authors": "Ewald Ralph, Hoffmann Christiane, Florian Alexandra, Neuhaus Ekkehard, Fernie Alisdair R, Bauwe Hermann", "reference": { "type": "PubMed", "id": "24872381", "url": "https://pubmed.ncbi.nlm.nih.gov/24872381" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZWT1-1", "protein_name": "Lipoyl synthase, mitochondrial", "gene_name": "LIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXP7-1", "protein_name": "Octanoyltransferase LIP2, mitochondrial", "gene_name": "LIP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZWT1", "url": "https://www.uniprot.org/uniprotkb/Q9ZWT1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24872381", "abstract": "", 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"uniprot_canonical_ac": "Q9LTB0-1", "protein_name": "Exocyst complex component EXO84B", "gene_name": "EXO84B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "X5JB51", "url": "https://www.uniprot.org/uniprotkb/X5JB51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20870962", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 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Biol. Cell", "date": "2014", "authors": "Ding Yu, Wang Juan, Chun Lai John Ho, Ling Chan Vivian Hoi, Wang Xiangfeng, Cai Yi, Tan Xiaoyun, Bao Yiqun, Xia Jun, Robinson David G, Jiang Liwen", "reference": { "type": "PubMed", "id": "24307681", "url": "https://pubmed.ncbi.nlm.nih.gov/24307681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "X5JB51-1", "protein_name": "Exocyst complex component SEC10b", "gene_name": "SEC10b", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AI6-1", "protein_name": "Exocyst complex component SEC6", "gene_name": "SEC6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "X5JA13-1", "protein_name": "Exocyst complex component SEC10a", "gene_name": "SEC10a; SEC10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S3U9-1", "protein_name": "Exocyst complex component SEC5A", "gene_name": "SEC5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93YU5-1", "protein_name": "Exocyst complex 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"mutagenesis": [ { "start_pos": 124, "end_pos": 124, "sequence_org": "K", "sequence_mut": "E", "comment": "Normal uridylylation and cell death induction in response to the Xanthomonas campestris effector XopAC/AvrAC in the presence of RKS1 and RPP13L4/ZAR1.", "evidence": [ { "database": "UniProtKB", "id": "O49839", "url": "https://www.uniprot.org/uniprotkb/O49839" }, { "database": "PubMed", "id": "26355215", "url": "https://pubmed.ncbi.nlm.nih.gov/26355215" } ], "uniprot_canonical_ac": "O49839-1" }, { "start_pos": 219, "end_pos": 219, "sequence_org": "D", "sequence_mut": "A", "comment": "Normal cell death induction in response to the Xanthomonas campestris effector XopAC/AvrAC in the presence of RKS1 and RPP13L4/ZAR1.", "evidence": [ { "database": "UniProtKB", "id": "O49839", "url": "https://www.uniprot.org/uniprotkb/O49839" }, { "database": "PubMed", "id": "26355215", "url": "https://pubmed.ncbi.nlm.nih.gov/26355215" } ], "uniprot_canonical_ac": "O49839-1" }, { "start_pos": 247, 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Lost ability to trigger cell death in response to the Xanthomonas campestris effector XopAC/AvrAC in the presence of PBL2 and RKS1. Impaired Xanthomonas campestris effector AvrAC/XopAC-mediated uridylylation; when associated with A-254.", "evidence": [ { "database": "UniProtKB", "id": "O49839", "url": "https://www.uniprot.org/uniprotkb/O49839" }, { "database": "PubMed", "id": "26355215", "url": "https://pubmed.ncbi.nlm.nih.gov/26355215" } ], "uniprot_canonical_ac": "O49839-1" }, { "start_pos": 254, "end_pos": 254, "sequence_org": "T", "sequence_mut": "A", "comment": "Increased sensitivity to the pathogenic biotrophic bacteria Xanthomonas campestris pv. campestris (Xcc) in vascular tissues. Lost ability to trigger cell death in response to the Xanthomonas campestris effector XopAC/AvrAC in the presence of PBL2 and RKS1. 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Biol. Chem.", "date": "2002", "authors": "Reddy Vaka S, Ali Gul S, Reddy Anireddy S N", "reference": { "type": "PubMed", "id": "11782485", "url": "https://pubmed.ncbi.nlm.nih.gov/11782485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "C0SVV6-1", "protein_name": "Calmodulin-binding protein 60 A", "gene_name": "CBP60A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IPM3-1", "protein_name": "Calmodulin-binding protein 60 E", "gene_name": "CBP60E", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0SV51-1", "protein_name": "Calmodulin-binding protein 60 C", "gene_name": "CBP60C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKL6-1", "protein_name": "Calmodulin-binding protein 60 B", "gene_name": "CBP60B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WVV6-1", "protein_name": "Calmodulin-binding protein 60 D", "gene_name": "CBP60D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FYG2-1", "protein_name": "Calmodulin-binding transcription activator 4", "gene_name": "CAMTA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CB03-1", "protein_name": "Protein NPGR1", "gene_name": "NPGR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JR57-1", "protein_name": "Calmodulin-binding protein 60 F", "gene_name": "CBP60F", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q66GN3-1", "protein_name": "Protein NPGR2", "gene_name": "NPGR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23463-1", "protein_name": "Calmodulin-binding transcription activator 5", "gene_name": "CAMTA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GSA7-1", "protein_name": "Calmodulin-binding transcription activator 3", "gene_name": "CAMTA3; 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Biol.", "date": "2009", "authors": "Barth Olaf, Vogt Sebastian, Uhlemann Ria, Zschiesche Wiebke, Humbeck Klaus", "reference": { "type": "PubMed", "id": "18974936", "url": "https://pubmed.ncbi.nlm.nih.gov/18974936" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IQG4-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 30", "gene_name": "HIPP30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXG0-1", "protein_name": "Zinc-finger homeodomain protein 8", "gene_name": "ZHD8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VP2-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 22", "gene_name": "HIPP22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9A3-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 20", "gene_name": "HIPP20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LF57-1", "protein_name": "Heavy metal-associated 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.", "journal": "Plant Physiol.", "date": "2003", "authors": "Marian Calin O, Bordoli Stefano J, Goltz Marion, Santarella Rachel A, Jackson Leisa P, Danilevskaya Olga, Beckstette Michael, Meeley Robert, Bass Hank W", "reference": { "type": "PubMed", "id": "14576282", "url": "https://pubmed.ncbi.nlm.nih.gov/14576282" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I7L1-1", "protein_name": "Telomere repeat-binding factor 4", "gene_name": "F1L3.23; F1L3_23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IEY4-1", "protein_name": "Telomere repeat-binding factor 5", "gene_name": "F28P22.7; F28P22_7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJW5-1", "protein_name": "Telomere repeat-binding factor 2", "gene_name": "TRB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWK4-1", "protein_name": "Telomere repeat-binding factor 1", "gene_name": "TRB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2X3-1", "protein_name": "Telomere repeat-binding factor 3", "gene_name": "TRB3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I7L1", "url": "https://www.uniprot.org/uniprotkb/F4I7L1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14576282", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor.", "journal": "FEBS Lett.", "date": "2004", "authors": "Chew Orinda, Lister Ryan, Qbadou Soumya, Heazlewood Joshua L, Soll Jurgen, Schleiff Enrico, Millar A Harvey, Whelan James", "reference": { "type": "PubMed", "id": "14741350", "url": "https://pubmed.ncbi.nlm.nih.gov/14741350" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVH5-1", "protein_name": "Outer envelope protein 64, chloroplastic", "gene_name": "OEP64; TOC64-III", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KCL7-1", "protein_name": "Outer envelope protein 64, mitochondrial", "gene_name": "OM64", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FR37-1", "protein_name": "Amidase 1", "gene_name": "AMI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVH5", "url": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The transmembrane domain of AtToc64 and its C-terminal lysine-rich flanking region are targeting signals to the chloroplast outer envelope membrane [correction].", "journal": "Mol. Cells", "date": "2004", "authors": "Lee Yong Jik, Sohn Eun Ju, Lee Kwang Hee, Lee Dong Wok, Hwang Inhwan", "reference": { "type": "PubMed", "id": "15179043", "url": "https://pubmed.ncbi.nlm.nih.gov/15179043" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVH5-1", "protein_name": "Outer envelope protein 64, chloroplastic", "gene_name": "OEP64; TOC64-III", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVH5", "url": "https://www.uniprot.org/uniprotkb/Q9LVH5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15179043", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The molecular chaperone Hsp90 delivers precursor proteins to the chloroplast import receptor Toc64.", "journal": "The EMBO journal", "date": "2006-05-03", "authors": "Qbadou Soumya, Becker Thomas, Mirus Oliver, Tews Ivo, Soll J\u00fcrgen, Schleiff Enrico", "reference": { "type": "PubMed", "id": "16619024", "url": "https://pubmed.ncbi.nlm.nih.gov/16619024" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVH5-1", "protein_name": "Outer envelope protein 64, chloroplastic", "gene_name": "OEP64; 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of long-chain fatty alcohol oxidase LjFAO1 in lotus japonicus.", "journal": "Biotechnology progress", "date": "2008", "authors": "Zhao Shilan, Lin Zhixin, Ma Wei, Luo Da, Cheng Qi", "reference": { "type": "PubMed", "id": "18396913", "url": "https://pubmed.ncbi.nlm.nih.gov/18396913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LW56-1", "protein_name": "Long-chain-alcohol oxidase FAO3", "gene_name": "FAO3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LW56", "url": "https://www.uniprot.org/uniprotkb/Q9LW56" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18396913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of four extensin genes in Arabidopsis thaliana by differential gene expression under stress and non-stress conditions.", "journal": "DNA Res.", "date": "2001", "authors": "Yoshiba Y, Aoki C, Iuchi S, Nanjo T, Seki M, Sekiguchi F, Yamaguchi-Shinozaki K, Shinozaki K", "reference": { "type": "PubMed", "id": "11475326", "url": "https://pubmed.ncbi.nlm.nih.gov/11475326" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1G9-1", "protein_name": "Extensin-2", "gene_name": "EXT2; HRGP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FS16-1", "protein_name": "Extensin-3", "gene_name": "EXT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38913-1", "protein_name": "Extensin-1", "gene_name": "EXT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A bioinformatics approach to the identification, classification, and analysis of hydroxyproline-rich glycoproteins.", "journal": "Plant Physiol.", "date": "2010", "authors": "Showalter Allan M, Keppler Brian, Lichtenberg Jens, Gu Dazhang, Welch Lonnie R", "reference": { "type": "PubMed", "id": "20395450", "url": "https://pubmed.ncbi.nlm.nih.gov/20395450" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1G9-1", "protein_name": "Extensin-2", "gene_name": "EXT2; HRGP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FS16-1", "protein_name": "Extensin-3", "gene_name": "EXT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38913-1", "protein_name": "Extensin-1", "gene_name": "EXT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1G9", "url": "https://www.uniprot.org/uniprotkb/Q9M1G9" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Autophagic nutrient recycling in Arabidopsis directed by the ATG8 and ATG12 conjugation pathways.", "journal": "Plant physiology", "date": "2005-08", "authors": "Thompson Allison R, Doelling Jed H, Suttangkakul Anongpat, Vierstra Richard D", "reference": { "type": "PubMed", "id": "16040659", "url": "https://pubmed.ncbi.nlm.nih.gov/16040659" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVK3-1", "protein_name": "Ubiquitin-like protein ATG12B", "gene_name": "APG12B; ATG12B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S924-1", "protein_name": "Ubiquitin-like protein ATG12A", "gene_name": "ATG12A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFI2-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVK3", "url": "https://www.uniprot.org/uniprotkb/Q9LVK3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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"table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The crystal structure of plant ATG12 and its biological implication in autophagy.", "journal": "Autophagy", "date": "2005", "authors": "Suzuki Nobuo N, Yoshimoto Kohki, Fujioka Yuko, Ohsumi Yoshinori, Inagaki Fuyuhiko", "reference": { "type": "PubMed", "id": "16874047", "url": "https://pubmed.ncbi.nlm.nih.gov/16874047" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVK3-1", "protein_name": "Ubiquitin-like protein ATG12B", "gene_name": "APG12B; ATG12B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVK3", "url": "https://www.uniprot.org/uniprotkb/Q9LVK3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16874047", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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Mol. Evol.", "date": "2007", "authors": "Luo Jie, Hall Benjamin D", "reference": { "type": "PubMed", "id": "17160640", "url": "https://pubmed.ncbi.nlm.nih.gov/17160640" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LV32-1", "protein_name": "DNA-directed RNA polymerase D subunit 2b", "gene_name": "NRPD2B; NRPD2b", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ02-1", "protein_name": "DNA-directed RNA polymerase IV subunit 1", "gene_name": "NRPD1A; NRPD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5D869-1", "protein_name": "DNA-directed RNA polymerase V subunit 1", "gene_name": "NRPD1B; NRPE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LV32", "url": "https://www.uniprot.org/uniprotkb/Q9LV32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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Henderson Ian R, Lu Cheng, Green Pamela J, Jacobsen Steven E", "reference": { "type": "PubMed", "id": "17360559", "url": "https://pubmed.ncbi.nlm.nih.gov/17360559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LV32-1", "protein_name": "DNA-directed RNA polymerase D subunit 2b", "gene_name": "NRPD2B; NRPD2b", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ02-1", "protein_name": "DNA-directed RNA polymerase IV subunit 1", "gene_name": "NRPD1A; NRPD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK40-1", "protein_name": "DNA-directed RNA polymerases IV and V subunit 2", "gene_name": "NRPD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5D869-1", "protein_name": "DNA-directed RNA polymerase V subunit 1", "gene_name": "NRPD1B; NRPE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LV32", "url": 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factors in Arabidopsis: implications for membrane biology in genome regulation.", "journal": "Nucleic Acids Res.", "date": "2007", "authors": "Kim Sun-Young, Kim Sang-Gyu, Kim Youn-Sung, Seo Pil Joon, Bae Mikyoung, Yoon Hye-Kyung, Park Chung-Mo", "reference": { "type": "PubMed", "id": "17158162", "url": "https://pubmed.ncbi.nlm.nih.gov/17158162" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LXL9-1", "protein_name": "NAC domain-containing protein 60", "gene_name": "NAC060; NAC60", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B5X570-1", "protein_name": "NAC domain-containing protein 14", "gene_name": "NAC014", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WV96-1", "protein_name": "NAC domain-containing protein 1", "gene_name": "NAC001", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIC5-1", "protein_name": "NAC domain-containing protein 17", "gene_name": "NAC017", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIN7-1", "protein_name": "NAC domain-containing protein 40", "gene_name": "NTL8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84K00-1", "protein_name": "NAC domain-containing protein 78", "gene_name": "NAC078", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCK6-1", "protein_name": "NAC domain-containing protein 62", "gene_name": "NAC062", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M126-1", "protein_name": "NAC domain-containing protein 69", "gene_name": "NAC69", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A4FVP6-1", "protein_name": "NAC domain-containing protein 16", "gene_name": "NAC016", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IED2-1", "protein_name": "NAC domain-containing protein 13", "gene_name": "NAC013; NAC13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MQY1-1", "protein_name": "NAC domain-containing protein 68", "gene_name": "NAC68; NTM1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple isoforms of Arabidopsis casein kinase I combine conserved catalytic domains with variable carboxyl-terminal extensions.", "journal": "Plant Physiol.", "date": "1995", "authors": "Klimczak L J, Farini D, Lin C, Ponti D, Cashmore A R, Giuliano G", "reference": { "type": "PubMed", "id": "7480353", "url": "https://pubmed.ncbi.nlm.nih.gov/7480353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LW62-1", "protein_name": "Casein kinase 1-like protein 10", "gene_name": "CKL10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSX4-1", "protein_name": "Casein kinase 1-like protein 8", "gene_name": "CKL8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39050-1", "protein_name": "Casein kinase 1-like protein 11", "gene_name": "CKI1; CKL11", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LW62", "url": "https://www.uniprot.org/uniprotkb/Q9LW62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7480353", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of the Arabidopsis thaliana P4-ATPases ALA6 and ALA7 impairs pollen fitness and alters the pollen tube plasma membrane.", "journal": "Frontiers in plant science", "date": "2015", "authors": "McDowell Stephen C, L\u00f3pez-Marqu\u00e9s Rosa L, Cohen Taylor, Brown Elizabeth, Rosenberg Alexa, Palmgren Michael G, Harper Jeffrey F", "reference": { "type": "PubMed", "id": "25954280", "url": "https://pubmed.ncbi.nlm.nih.gov/25954280" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVK9-1", "protein_name": "Probable phospholipid-transporting ATPase 7", "gene_name": "ALA7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLK6-1", "protein_name": "Phospholipid-transporting ATPase 6", "gene_name": "ALA6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVK9", "url": "https://www.uniprot.org/uniprotkb/Q9LVK9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25954280", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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related protein (MRP) ABC transporter genes in Arabidopsis thaliana.", "journal": "Planta", "date": "2002", "authors": "Kolukisaoglu H Uner, Bovet Lucien, Klein Markus, Eggmann Thomas, Geisler Markus, Wanke Dierk, Martinoia Enrico, Schulz Burkhard", "reference": { "type": "PubMed", "id": "12430019", "url": "https://pubmed.ncbi.nlm.nih.gov/12430019" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1C7-1", "protein_name": "ABC transporter C family member 9", "gene_name": "ABCC9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYS2-1", "protein_name": "ABC transporter C family member 10", "gene_name": "ABCC10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZJ5-1", "protein_name": "ABC transporter C family member 14", "gene_name": "ABCC14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKX0-1", "protein_name": "ABC transporter C family member 13", "gene_name": "ABCC13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGU1-1", "protein_name": "ABC transporter C family member 8", "gene_name": "ABCC8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZZ4-1", "protein_name": "ABC transporter C family member 6", "gene_name": "ABCC6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK62-1", "protein_name": "ABC transporter C family member 7", "gene_name": "ABCC7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8H1-1", "protein_name": "ABC transporter C family member 11", "gene_name": "ABCC11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8H0-1", "protein_name": "ABC transporter C family member 12", "gene_name": "ABCC12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7GB25-1", "protein_name": "ABC transporter C family member 5", "gene_name": "ABCC5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7DM58-1", "protein_name": "ABC transporter C family member 4", "gene_name": "ABCC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8G9-1", "protein_name": "ABC transporter C family member 1", "gene_name": "ABCC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK64-1", "protein_name": "ABC transporter C family member 3", "gene_name": "ABCC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42093-1", "protein_name": "ABC transporter C family member 2", "gene_name": "ABCC2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1C7", "url": "https://www.uniprot.org/uniprotkb/Q9M1C7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12430019", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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Feij\u00f3 Jos\u00e9, Zipfel Cyril", "reference": { "type": "PubMed", "id": "32846426", "url": "https://pubmed.ncbi.nlm.nih.gov/32846426" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B5TYT3-1", "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 1.3", "gene_name": "OSCA1.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVE4-1", "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 1.5", "gene_name": "OSCA1.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48814-1", "protein_name": "Serine/threonine-protein kinase BIK1", "gene_name": "BIK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SY14-1", "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 1.7", "gene_name": "OSCA1.7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZM5-1", "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 1.6", "gene_name": "OSCA1.6", "tax_name": "Mouse-ear cress" }, { 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"authors": "Takagi Junpei, Renna Luciana, Takahashi Hideyuki, Koumoto Yasuko, Tamura Kentaro, Stefano Giovanni, Fukao Yoichiro, Kondo Maki, Nishimura Mikio, Shimada Tomoo, Brandizzi Federica, Hara-Nishimura Ikuko", "reference": { "type": "PubMed", "id": "24280388", "url": "https://pubmed.ncbi.nlm.nih.gov/24280388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4ICD9-1", "protein_name": "Protein transport protein SEC31 homolog A", "gene_name": "SEC31A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64740-1", "protein_name": "Protein transport protein SEC13 homolog B", "gene_name": "SEC13B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRI1-1", "protein_name": "Protein transport protein SEC13 homolog A", "gene_name": "SEC13A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGK8-1", "protein_name": "Protein transport protein SEC16B homolog", "gene_name": "MNJ7.8; SEC16B", "tax_name": "Mouse-ear cress" }, { 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"reference": { "type": "PubMed", "id": "19626137", "url": "https://pubmed.ncbi.nlm.nih.gov/19626137" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I878-1", "protein_name": "Protein BRANCHLESS TRICHOME", "gene_name": "BLT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FF86-1", "protein_name": "BAHD acyltransferase DCR", "gene_name": "DCR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I878", "url": "https://www.uniprot.org/uniprotkb/F4I878" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19626137", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabinosylation of a Yariv-precipitable cell wall polymer impacts plant growth as exemplified by the Arabidopsis glycosyltransferase mutant ray1.", "journal": "Molecular plant", "date": "2013-07", "authors": "Gille Sascha, Sharma Vaishali, Baidoo Edward E K, Keasling Jay D, Scheller Henrik Vibe, Pauly Markus", "reference": { "type": "PubMed", "id": "23396039", "url": "https://pubmed.ncbi.nlm.nih.gov/23396039" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I6V0-1", 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regulatory properties to the heterotetrameric enzyme.", "journal": "J. Biol. Chem.", "date": "2003", "authors": "Crevill\u00e9n Pedro, Ballicora Miguel A, M\u00e9rida Angel, Preiss Jack, Romero Jos\u00e9 M", "reference": { "type": "PubMed", "id": "12748181", "url": "https://pubmed.ncbi.nlm.nih.gov/12748181" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I8U2-1", "protein_name": "Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic", "gene_name": "APS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I8U2", "url": "https://www.uniprot.org/uniprotkb/F4I8U2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12748181", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"PubMed", "id": "15347792", "url": "https://pubmed.ncbi.nlm.nih.gov/15347792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I8U2-1", "protein_name": "Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic", "gene_name": "APS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LFG1-1", "protein_name": "Probable alpha-amylase 2", "gene_name": "AMY2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ56-1", "protein_name": "Alpha-amylase 1", "gene_name": "AMY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94A41-1", "protein_name": "Alpha-amylase 3, chloroplastic", "gene_name": "AMY3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MAQ0-1", "protein_name": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "gene_name": "GBSS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"Differential pattern of expression and sugar regulation of Arabidopsis thaliana ADP-glucose pyrophosphorylase-encoding genes.", "journal": "J. Biol. Chem.", "date": "2005", "authors": "Crevill\u00e9n Pedro, Ventriglia Tiziana, Pinto Francisco, Orea Alicia, M\u00e9rida Angel, Romero Jos\u00e9 M", "reference": { "type": "PubMed", "id": "15598655", "url": "https://pubmed.ncbi.nlm.nih.gov/15598655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I8U2-1", "protein_name": "Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic", "gene_name": "APS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I8U2", "url": "https://www.uniprot.org/uniprotkb/F4I8U2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15598655", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization.", "journal": "Plant Physiol.", "date": "2006", "authors": "Palmieri Luigi, Arrigoni Roberto, Blanco Emanuela, Carrari Fernando, Zanor Maria Ines, Studart-Guimaraes Claudia, Fernie Alisdair R, Palmieri Ferdinando", "reference": { "type": "PubMed", "id": "16950860", "url": "https://pubmed.ncbi.nlm.nih.gov/16950860" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HT41-1", "protein_name": "Probable S-adenosylmethionine carrier 2, chloroplastic", "gene_name": "SAMC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AG6-1", "protein_name": "S-adenosylmethionine carrier 1, chloroplastic/mitochondrial", "gene_name": "SAMC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HT41", "url": "https://www.uniprot.org/uniprotkb/F4HT41" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16950860", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development.", "journal": "Plant Cell", "date": "2006", "authors": "Bouvier Florence, Linka Nicole, Isner Jean-Charles, Mutterer J\u00e9r\u00f4me, Weber Andreas P M, Camara Bilal", "reference": { "type": "PubMed", "id": "17098813", "url": "https://pubmed.ncbi.nlm.nih.gov/17098813" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4HT41-1", "protein_name": "Probable S-adenosylmethionine carrier 2, chloroplastic", "gene_name": "SAMC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AG6-1", "protein_name": "S-adenosylmethionine carrier 1, chloroplastic/mitochondrial", "gene_name": "SAMC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HT41", "url": "https://www.uniprot.org/uniprotkb/F4HT41" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Yu, Zeng Yonglun, Ueda Takashi, Nakano Akihiko, Jiang Liwen", "reference": { "type": "PubMed", "id": "24824487", "url": "https://pubmed.ncbi.nlm.nih.gov/24824487" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I2S4-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog A", "gene_name": "CCZ1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0Z274-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog B", "gene_name": "CCZ1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SN68-1", "protein_name": "Ras-related protein RABF2b", "gene_name": "ARA7; RABF2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS94-1", "protein_name": "Ras-related protein RABG3f", "gene_name": "RABG3F", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKN1-1", "protein_name": "Vacuolar fusion protein MON1 homolog", "gene_name": "MON1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis 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Cell Fact.", "date": "2019", "authors": "Wang Caixia, Su Xinyao, Sun Mengchu, Zhang Mengting, Wu Jiajia, Xing Jianmin, Wang Ying, Xue Jianping, Liu Xia, Sun Wei, Chen Shilin", "reference": { "type": "PubMed", "id": "31138208", "url": "https://pubmed.ncbi.nlm.nih.gov/31138208" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B6EXY6-1", "protein_name": "Beta-amyrin synthase", "gene_name": "BAS", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB48-1", "protein_name": "NADPH--cytochrome P450 reductase 1", "gene_name": "ATR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "B6EXY6", "url": "https://www.uniprot.org/uniprotkb/B6EXY6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.31138208", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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Rep.", "date": "2020", "authors": "Hollender Courtney A, Hill Joseph L, Waite Jessica, Dardick Chris", "reference": { "type": "PubMed", "id": "32269265", "url": "https://pubmed.ncbi.nlm.nih.gov/32269265" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IJ79-1", "protein_name": "Protein TILLER ANGLE CONTROL 1", "gene_name": "TAC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5XV40-1", "protein_name": "Protein LAZY 1", "gene_name": "LAZY1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IJ79", "url": "https://www.uniprot.org/uniprotkb/F4IJ79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.32269265", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Preetam, Steffen Joshua G, Zhurov Vladimir, Berleth Thomas, Clark Richard M, Grbic Vojislava", "reference": { "type": "PubMed", "id": "25070081", "url": "https://pubmed.ncbi.nlm.nih.gov/25070081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IN78-1", "protein_name": "Protein HUA2-LIKE 2", "gene_name": "HULK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IZM8-1", "protein_name": "Protein HUA2-LIKE 3", "gene_name": "HULK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LEY4-1", "protein_name": "Protein HUA2-LIKE 1", "gene_name": "HULK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XER9-1", "protein_name": "ENHANCER OF AG-4 protein 2", "gene_name": "HUA2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IN78", "url": "https://www.uniprot.org/uniprotkb/F4IN78" } ], "common_name": "Mouse-ear cress", 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Cell Sci.", "date": "2007", "authors": "Rossignol Pascale, Collier Sarah, Bush Max, Shaw Peter, Doonan John H", "reference": { "type": "PubMed", "id": "17911168", "url": "https://pubmed.ncbi.nlm.nih.gov/17911168" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A9JTY4-1", "protein_name": "Protection of telomeres protein 1c", "gene_name": "POT1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SPU7-1", "protein_name": "Telomerase reverse transcriptase", "gene_name": "TERT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56Y52-1", "protein_name": "Protection of telomeres protein 1a", "gene_name": "POT1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "A9JTY4", "url": "https://www.uniprot.org/uniprotkb/A9JTY4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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Claudia, Survotseva Yulia, Canal Elijah, Nelson Andrew D L, Shippen Dorothy E", "reference": { "type": "PubMed", "id": "31134349", "url": "https://pubmed.ncbi.nlm.nih.gov/31134349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A9JTY4-1", "protein_name": "Protection of telomeres protein 1c", "gene_name": "POT1C", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "A9JTY4", "url": "https://www.uniprot.org/uniprotkb/A9JTY4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 65, "end_pos": 65, "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on affinity binding to single-stranded telomeric DNA.", "evidence": [ { "database": "UniProtKB", "id": "A9JTY4", "url": "https://www.uniprot.org/uniprotkb/A9JTY4" }, { "database": "PubMed", "id": "31134349", 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"date": "1999", "authors": "Jouannic S, Hamal A, Leprince A S, Tregear J W, Kreis M, Henry Y", "reference": { "type": "PubMed", "id": "10095117", "url": "https://pubmed.ncbi.nlm.nih.gov/10095117" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M0T3-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 3", "gene_name": "MEKK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HRJ4-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 3", "gene_name": "MAP3KA; MAPKKK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5H5-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 5", "gene_name": "MAPKKK5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M0T3", "url": "https://www.uniprot.org/uniprotkb/Q9M0T3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "POLAR-guided signalling complex assembly and localization drive asymmetric cell division.", "journal": "Nature", "date": "2018-11", "authors": "Houbaert Anaxi, Zhang Cheng, Tiwari Manish, Wang Kun, de Marcos Serrano Alberto, Savatin Daniel V, Urs Mounashree J, Zhiponova Miroslava K, Gudesblat Gustavo E, Vanhoutte Isabelle, Eeckhout Dominique, Boeren Sjef, Karimi Mansour, Betti Camilla, Jacobs Thomas, Fenoll Carmen, Mena Monta\u00f1a, de Vries Sacco, De Jaeger Geert, Russinova Eugenia", "reference": { "type": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A1P8B9P9-1", "protein_name": "Protein POLAR-like 1", "gene_name": "PL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q700C7-1", "protein_name": "Transcription factor SPEECHLESS", "gene_name": "SPCH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39011-1", "protein_name": "Shaggy-related protein kinase eta", "gene_name": "ASK7; BIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43289-1", "protein_name": "Shaggy-related protein kinase gamma", "gene_name": "ASK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5BPF3-1", "protein_name": "Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE", "gene_name": "BASL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NQ99-1", "protein_name": "Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION", "gene_name": "POLAR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9P9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9P9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 69, "end_pos": 69, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes kinase activity. Altered BASL exclusion from nucleus.", "evidence": [ { "database": "UniProtKB", "id": "Q39011", "url": "https://www.uniprot.org/uniprotkb/Q39011" }, { "database": "PubMed", "id": "11847343", "url": "https://pubmed.ncbi.nlm.nih.gov/11847343" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" }, { "database": "PubMed", "id": "23496207", "url": "https://pubmed.ncbi.nlm.nih.gov/23496207" } ], "uniprot_canonical_ac": "Q39011-1" }, { "start_pos": 72, "end_pos": 72, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation and impaired polarized subcellular localization. Reduced interaction with YDA and fails to induce polarization; when associated with A-89, A-145, A-168, A-235 and A-246.", "evidence": [ { "database": "UniProtKB", "id": "Q5BPF3", "url": "https://www.uniprot.org/uniprotkb/Q5BPF3" }, { "database": "PubMed", "id": "27746029", "url": "https://pubmed.ncbi.nlm.nih.gov/27746029" }, { "database": "PubMed", "id": "25843888", "url": "https://pubmed.ncbi.nlm.nih.gov/25843888" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q5BPF3-1" }, { "start_pos": 85, "end_pos": 85, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation; when associated with A-86, A-87, A-89 and A-91.", "evidence": [ { "database": "UniProtKB", "id": "Q5BPF3", "url": "https://www.uniprot.org/uniprotkb/Q5BPF3" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q5BPF3-1" }, { "start_pos": 86, "end_pos": 86, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation; when associated with A-85, A-87, A-89 and A-91.", "evidence": [ { "database": "UniProtKB", "id": "Q5BPF3", "url": "https://www.uniprot.org/uniprotkb/Q5BPF3" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q5BPF3-1" }, { "start_pos": 87, "end_pos": 87, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation; when associated with A-85, A-86, A-89 and A-91.", "evidence": [ { "database": "UniProtKB", "id": "Q5BPF3", "url": "https://www.uniprot.org/uniprotkb/Q5BPF3" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q5BPF3-1" }, { "start_pos": 89, "end_pos": 89, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation; when associated with A-85, A-86, A-87 and A-91. Abrogated MPK3/MPK6-mediated phosphorylation and abnormal nuclear retention associated with impaired cortical polar accumulation; when associated with A-145, A-168, A-235 and A-246. Reduced interaction with YDA and fails to induce polarization; when associated with A-72, A-145, A-168, A-235 and A-246.", "evidence": [ { "database": "UniProtKB", "id": "Q5BPF3", "url": "https://www.uniprot.org/uniprotkb/Q5BPF3" }, { "database": "PubMed", "id": "27746029", "url": "https://pubmed.ncbi.nlm.nih.gov/27746029" }, { "database": "PubMed", "id": "25843888", "url": "https://pubmed.ncbi.nlm.nih.gov/25843888" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q5BPF3-1" }, { "start_pos": 91, "end_pos": 91, "sequence_org": "T", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation; when associated with A-85, A-86, A-87 and A-89.", "evidence": [ { "database": "UniProtKB", "id": "Q5BPF3", "url": "https://www.uniprot.org/uniprotkb/Q5BPF3" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q5BPF3-1" }, { "start_pos": 141, "end_pos": 141, "sequence_org": "T", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 145, "end_pos": 145, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 149, "end_pos": 149, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 159, "end_pos": 159, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 163, "end_pos": 163, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { 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phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 19, "end_pos": 19, "sequence_org": "T", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", 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plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 235, "end_pos": 235, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 29, "end_pos": 29, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 308, "end_pos": 308, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-309, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 309, "end_pos": 309, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-320, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 320, "end_pos": 320, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, A-86, A-91, A-94, A-141, A-145, A-149, A-159, A-163, A-193, A-197, A-217, A-233, A-235, A-308, A-309, A-324, A-327, A-331, A-332, A-336 and A-340.", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ99", "url": "https://www.uniprot.org/uniprotkb/Q6NQ99" }, { "database": "PubMed", "id": "30429609", "url": "https://pubmed.ncbi.nlm.nih.gov/30429609" } ], "uniprot_canonical_ac": "Q6NQ99-1" }, { "start_pos": 324, "end_pos": 324, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced ASK7-mediated phosphorylation, enhanced stabilization at the plasma membrane and increased cell division; when associated with A-19, A-29, A-33, A-79, A-84, 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis AtRaptor genes are essential for post-embryonic plant growth.", "journal": "BMC Biol.", "date": "2005", "authors": "Anderson Garrett H, Veit Bruce, Hanson Maureen R", "reference": { "type": "PubMed", "id": "15845148", "url": "https://pubmed.ncbi.nlm.nih.gov/15845148" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZW9-1", "protein_name": "Regulatory-associated protein of TOR 2", "gene_name": "RAPTOR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93YQ1-1", "protein_name": "Regulatory-associated protein of TOR 1", "gene_name": "RAPTOR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZW9", "url": "https://www.uniprot.org/uniprotkb/Q9LZW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15845148", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling.", "journal": "BMC Genomics", "date": "2008", "authors": "Hunt Arthur G, Xu Ruqiang, Addepalli Balasubrahmanyam, Rao Suryadevara, Forbes Kevin P, Meeks Lisa R, Xing Denghui, Mo Min, Zhao Hongwei, Bandyopadhyay Amrita, Dampanaboina Lavanya, Marion Amanda, Von Lanken Carol, Li Qingshun Quinn", "reference": { "type": "PubMed", "id": "18479511", "url": "https://pubmed.ncbi.nlm.nih.gov/18479511" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LX90-1", "protein_name": "Polyadenylate-binding protein 3", "gene_name": "PABN3; RRM", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VI4-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GUP1-1", "protein_name": "Cleavage stimulation factor subunit 77", "gene_name": "CSTF77", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VYW1-1", "protein_name": "Nuclear poly(A) polymerase 4", "gene_name": "PAPS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AF0-1", "protein_name": "Pre-mRNA cleavage factor Im 25 kDa subunit 1", "gene_name": "CFIS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKF9-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF100", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L4J2-1", "protein_name": "Cleavage stimulation factor subunit 50", "gene_name": "CSTF50", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SR06-1", "protein_name": "Protein CLP1 homolog", "gene_name": "CLPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JC20-1", "protein_name": "FIP1[III]-like protein", "gene_name": "FIPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIX8-1", "protein_name": "Polyadenylation and cleavage factor homolog 5", "gene_name": "PCFS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMT2-1", "protein_name": "Nuclear poly(A) polymerase 1", "gene_name": "PAPS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXS3-1", "protein_name": "Pre-mRNA cleavage factor Im 25 kDa subunit 2", "gene_name": "CFIS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C710-1", "protein_name": "Polyadenylation and cleavage factor homolog 1", "gene_name": "PCFS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJN9-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLE2-1", "protein_name": "Protein CLP1 homolog 5", "gene_name": "CLPS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WPF2-1", "protein_name": "Polyadenylation and cleavage factor homolog 4", "gene_name": "PCFS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGR0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF160", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56XM9-1", "protein_name": "Nuclear poly(A) polymerase 3", "gene_name": "PAPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A9LNK9-1", "protein_name": "30-kDa cleavage and polyadenylation specificity factor 30", "gene_name": "CPSF30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82312-1", "protein_name": "Nuclear poly(A) polymerase 2", "gene_name": "PAPS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KDH9-1", "protein_name": "FIP1[V]-like protein", "gene_name": "FIP1[V]; FIPS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9G6-1", "protein_name": "Cleavage stimulating factor 64", "gene_name": "CSTF64", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LX90", "url": "https://www.uniprot.org/uniprotkb/Q9LX90" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18479511", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm.", "journal": "Cell Stress Chaperones", "date": "2013", "authors": "Kim Myung-Hee, Sonoda Yutaka, Sasaki Kentaro, Kaminaka Hironori, Imai Ryozo", "reference": { "type": "PubMed", "id": "23334891", "url": "https://pubmed.ncbi.nlm.nih.gov/23334891" }, "referenced_glycans": [], "referenced_proteins": [ { 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