[ { "title": "RAF inhibitors transactivate RAF dimers and ERK signalling in cells with wild-type BRAF.", "journal": "Nature", "date": "2010", "authors": "Poulikakos PI, Zhang C, Bollag G, Shokat KM, Rosen N", "reference": { "type": "PubMed", "id": "20179705", "url": "https://pubmed.ncbi.nlm.nih.gov/20179705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20179705", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma.", "journal": "Nature medicine", "date": "2010", "authors": "Palanisamy N, Ateeq B, Kalyana-Sundaram S, Pflueger D, Ramnarayanan K, Shankar S, Han B, Cao Q, Cao X, Suleman K, Kumar-Sinha C, Dhanasekaran SM, Chen YB, Esgueva R, Banerjee S, LaFargue CJ, Siddiqui J, Demichelis F, Moeller P, Bismar TA, Kuefer R, Fullen DR, Johnson TM, Greenson JK, Giordano TJ, Tan P, Tomlins SA, Varambally S, Rubin MA, Maher CA, Chinnaiyan AM", "reference": { "type": "PubMed", "id": "20526349", "url": "https://pubmed.ncbi.nlm.nih.gov/20526349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20526349", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of mutated, activated BRAF in metastatic melanoma.", "journal": "The New England journal of medicine", "date": "2010", "authors": "Flaherty KT, Puzanov I, Kim KB, Ribas A, McArthur GA, Sosman JA, O'Dwyer PJ, Lee RJ, Grippo JF, Nolop K, Chapman PB", "reference": { "type": "PubMed", "id": "20818844", "url": "https://pubmed.ncbi.nlm.nih.gov/20818844" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20818844", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Melanomas acquire resistance to B-RAF(V600E) inhibition by RTK or N-RAS upregulation.", "journal": "Nature", "date": "2010", "authors": "Nazarian R, Shi H, Wang Q, Kong X, Koya RC, Lee H, Chen Z, Lee MK, Attar N, Sazegar H, Chodon T, Nelson SF, McArthur G, Sosman JA, Ribas A, Lo RS", "reference": { "type": "PubMed", "id": "21107323", "url": "https://pubmed.ncbi.nlm.nih.gov/21107323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21107323", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of miR-204 in the regulation of apoptosis, endoplasmic reticulum stress response, and inflammation in human trabecular meshwork cells.", "journal": "Investigative ophthalmology & visual science", "date": "2011", "authors": "Li G, Luna C, Qiu J, Epstein DL, Gonzalez P", "reference": { "type": "PubMed", "id": "21282569", "url": "https://pubmed.ncbi.nlm.nih.gov/21282569" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14773-1", "protein_name": "Tripeptidyl-peptidase 1", "gene_name": "TPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14203-1", "protein_name": "Dynactin subunit 1", "gene_name": "DCTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "ARFGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C869-1", "protein_name": "Cytosolic phospholipase A2 beta", "gene_name": "PLA2G4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS3-1", "protein_name": "DnaJ homolog subfamily B member 9", "gene_name": "DNAJB9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14554-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS4-1", "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95070-1", "protein_name": "Protein YIF1A", "gene_name": "YIF1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14999-1", "protein_name": "Cullin-7", "gene_name": "CUL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14653-1", "protein_name": "Golgi SNAP receptor complex member 2", "gene_name": "GOSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWM8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP14", "gene_name": "FKBP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2G4-1", "protein_name": "Testis-specific Y-encoded-like protein 2", "gene_name": "TSPYL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14595-1", "protein_name": "Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2", "gene_name": "CTDSP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U4-1", "protein_name": "CXXC-type zinc finger protein 1", "gene_name": "CXXC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43731-1", "protein_name": "ER lumen protein-retaining receptor 3", "gene_name": "KDELR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DMM9-1", "protein_name": "Sulfotransferase 1A3", "gene_name": "SULT1A3; SULT1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06210-1", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "GFPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49840-1", "protein_name": "Glycogen synthase kinase-3 alpha", "gene_name": "GSK3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92611-1", "protein_name": "ER degradation-enhancing alpha-mannosidase-like protein 1", "gene_name": "EDEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13105-1", "protein_name": "Zinc finger and BTB domain-containing protein 17", "gene_name": "ZBTB17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU5-1", "protein_name": "Guanine nucleotide-exchange factor SEC12", "gene_name": "PREB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51858-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "HDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15084-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "PDIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93075-1", "protein_name": "3'-5' RNA nuclease TATDN2", "gene_name": "TATDN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X1-1", "protein_name": "Stress-associated endoplasmic reticulum protein 1", "gene_name": "SERP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5MNZ9-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 1", "gene_name": "WIPI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92935-1", "protein_name": "Exostosin-like 1", "gene_name": "EXTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76024-1", "protein_name": "Wolframin", "gene_name": "WFS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61421-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "ATP6V0D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49748-1", "protein_name": "Very long-chain acyl-CoA dehydrogenase, mitochondrial", "gene_name": "ACADVL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H8-1", "protein_name": "Myeloid-derived growth factor", "gene_name": "MYDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35611-1", "protein_name": "Alpha-adducin", "gene_name": "ADD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15173-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform", "gene_name": "PPP2R5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21282569", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Oncogenic FAM131B-BRAF fusion resulting from 7q34 deletion comprises an alternative mechanism of MAPK pathway activation in pilocytic astrocytoma.", "journal": "Acta neuropathologica", "date": "2011", "authors": "Cin H, Meyer C, Herr R, Janzarik WG, Lambert S, Jones DT, Jacob K, Benner A, Witt H, Remke M, Bender S, Falkenstein F, Van Anh TN, Olbrich H, von Deimling A, Pekrun A, Kulozik AE, Gnekow A, Scheurlen W, Witt O, Omran H, Jabado N, Collins VP, Brummer T, Marschalek R, Lichter P, Korshunov A, Pfister SM", "reference": { "type": "PubMed", "id": "21424530", "url": "https://pubmed.ncbi.nlm.nih.gov/21424530" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21424530", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "c-Raf, but not B-Raf, is essential for development of K-Ras oncogene-driven non-small cell lung carcinoma.", "journal": "Cancer cell", "date": "2011", "authors": "Blasco RB, Francoz S, Santamaria D, Canamero M, Dubus P, Charron J, Baccarini M, Barbacid M", "reference": { "type": "PubMed", "id": "21514245", "url": "https://pubmed.ncbi.nlm.nih.gov/21514245" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21514245", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Improved survival with vemurafenib in melanoma with BRAF V600E mutation.", "journal": "The New England journal of medicine", "date": "2011", "authors": "Chapman PB, Hauschild A, Robert C, Haanen JB, Ascierto P, Larkin J, Dummer R, Garbe C, Testori A, Maio M, Hogg D, Lorigan P, Lebbe C, Jouary T, Schadendorf D, Ribas A, O'Day SJ, Sosman JA, Kirkwood JM, Eggermont AM, Dreno B, Nolop K, Li J, Nelson B, Hou J, Lee RJ, Flaherty KT, McArthur GA", "reference": { "type": "PubMed", "id": "21639808", "url": "https://pubmed.ncbi.nlm.nih.gov/21639808" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21639808", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Osteoblast mineralization requires beta1 integrin/ICAP-1-dependent fibronectin deposition.", "journal": "J. Cell Biol.", "date": "2011", "authors": "Brunner M, Millon-Fremillon A, Chevalier G, Nakchbandi IA, Mosher D, Block MR, Albiges-Rizo C, Bouvard D", "reference": { "type": "PubMed", "id": "21768292", "url": "https://pubmed.ncbi.nlm.nih.gov/21768292" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBL0-3", "protein_name": "Tensin-1", "gene_name": "TNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26039-1", "protein_name": "Talin-1", "gene_name": "Tln1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35671-1", "protein_name": "Integrin beta-1-binding protein 1", "gene_name": "Itgb1bp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96AC1-1", "protein_name": "Fermitin family homolog 2", "gene_name": "FERMT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11276-1", "protein_name": "Fibronectin", "gene_name": "Fn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09055-1", "protein_name": "Integrin beta-1", "gene_name": "Itgb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70335-1", "protein_name": "Rho-associated protein kinase 1", "gene_name": "Rock1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CIB5-1", "protein_name": "Fermitin family homolog 2", "gene_name": "Fermt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O14713-1", "protein_name": "Integrin beta-1-binding protein 1", "gene_name": "ITGB1BP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 787, "end_pos": 787, "sequence_org": "V", "sequence_mut": "T", "comment": "Reduces interaction with ITGB1BP1, but not with FERMT2 or TLN1. Inhibits fibronectin deposition and mineralized bone nodules formation.", "evidence": [ { "database": "UniProtKB", "id": "P05556", "url": "https://www.uniprot.org/uniprotkb/P05556" }, { "database": "PubMed", "id": "21768292", "url": "https://pubmed.ncbi.nlm.nih.gov/21768292" } ], "uniprot_canonical_ac": "P05556-1" } ], "record_id": "pubmed.21768292", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spectrum of mutations in Noonan syndrome and their correlation with phenotypes.", "journal": "The Journal of pediatrics", "date": "2011", "authors": "Lee BH, Kim JM, Jin HY, Kim GH, Choi JH, Yoo HW", "reference": { "type": "PubMed", "id": "21784453", "url": "https://pubmed.ncbi.nlm.nih.gov/21784453" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21784453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "C-Raf is required for the initiation of lung cancer by K-Ras(G12D).", "journal": "Cancer discovery", "date": "2011", "authors": "Karreth FA, Frese KK, DeNicola GM, Baccarini M, Tuveson DA", "reference": { "type": "PubMed", "id": "22043453", "url": "https://pubmed.ncbi.nlm.nih.gov/22043453" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22043453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAF inhibitor resistance is mediated by dimerization of aberrantly spliced BRAF(V600E).", "journal": "Nature", "date": "2011", "authors": "Poulikakos PI, Persaud Y, Janakiraman M, Kong X, Ng C, Moriceau G, Shi H, Atefi M, Titz B, Gabay MT, Salton M, Dahlman KB, Tadi M, Wargo JA, Flaherty KT, Kelley MC, Misteli T, Chapman PB, Sosman JA, Graeber TG, Ribas A, Lo RS, Rosen N, Solit DB", "reference": { "type": "PubMed", "id": "22113612", "url": "https://pubmed.ncbi.nlm.nih.gov/22113612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22113612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of RAF isoform switching induced by oncogenic RAS in melanoma.", "journal": "Small GTPases", "date": "2011", "authors": "Dumaz N", "reference": { "type": "PubMed", "id": "22292133", "url": "https://pubmed.ncbi.nlm.nih.gov/22292133" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 151, "end_pos": 151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15056", "url": "https://www.uniprot.org/uniprotkb/P15056" }, { "database": "PubMed", "id": "24275569", "url": "https://pubmed.ncbi.nlm.nih.gov/24275569" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PRO", "id": "P15056", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P15056" }, { "database": "iPTMnet", "id": "P15056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15056" }, { "database": "PubMed", "id": "22292133", "url": "https://pubmed.ncbi.nlm.nih.gov/22292133" }, { "database": "PubMed", "id": "27034005", "url": "https://pubmed.ncbi.nlm.nih.gov/27034005" }, { "database": "PubMed", "id": "29335436", "url": "https://pubmed.ncbi.nlm.nih.gov/29335436" } ], "site_lbl": "Ser151", "uniprot_canonical_ac": "P15056-1" } ], "record_id": "pubmed.22292133", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Survival in BRAF V600-mutant advanced melanoma treated with vemurafenib.", "journal": "The New England journal of medicine", "date": "2012", "authors": "Sosman JA, Kim KB, Schuchter L, Gonzalez R, Pavlick AC, Weber JS, McArthur GA, Hutson TE, Moschos SJ, Flaherty KT, Hersey P, Kefford R, Lawrence D, Puzanov I, Lewis KD, Amaravadi RK, Chmielowski B, Lawrence HJ, Shyr Y, Ye F, Li J, Nolop KB, Lee RJ, Joe AK, Ribas A", "reference": { "type": "PubMed", "id": "22356324", "url": "https://pubmed.ncbi.nlm.nih.gov/22356324" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22356324", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Melanoma whole-exome sequencing identifies (V600E)B-RAF amplification-mediated acquired B-RAF inhibitor resistance.", "journal": "Nature communications", "date": "2012", "authors": "Shi H, Moriceau G, Kong X, Lee MK, Lee H, Koya RC, Ng C, Chodon T, Scolyer RA, Dahlman KB, Sosman JA, Kefford RF, Long GV, Nelson SF, Ribas A, Lo RS", "reference": { "type": "PubMed", "id": "22395615", "url": "https://pubmed.ncbi.nlm.nih.gov/22395615" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22395615", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vivo imaging of molecular interactions at damaged sarcolemma.", "journal": "Developmental cell", "date": "2012", "authors": "Roostalu U, Strahle U", "reference": { "type": "PubMed", "id": "22421042", "url": "https://pubmed.ncbi.nlm.nih.gov/22421042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "B8A4V2-1", "protein_name": "Annexin", "gene_name": "anxa11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYX5-1", "protein_name": "Lysosomal-associated transmembrane protein 4A", "gene_name": "laptm4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AB32TWG9-1", "protein_name": "Annexin", "gene_name": "anxa1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A8M1P3Z5-1", "protein_name": "Ras-related protein Rab-6A isoform 2", "gene_name": "rab6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QCP4-1", "protein_name": "Lysosome-associated membrane glycoprotein 1b precursor", "gene_name": "lamp1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A8M1PC84-1", "protein_name": "Annexin", "gene_name": "anxa11b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22421042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct requirement for an intact dimer interface in wild-type, V600E and kinase-dead B-Raf signalling.", "journal": "The EMBO journal", "date": "2012", "authors": "Roring M, Herr R, Fiala GJ, Heilmann K, Braun S, Eisenhardt AE, Halbach S, Capper D, von Deimling A, Schamel WW, Saunders DN, Brummer T", "reference": { "type": "PubMed", "id": "22510884", "url": "https://pubmed.ncbi.nlm.nih.gov/22510884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22510884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel SND1-BRAF fusion confers resistance to c-Met inhibitor PF-04217903 in GTL16 cells through [corrected] MAPK activation.", "journal": "PloS one", "date": "2012", "authors": "Lee NV, Lira ME, Pavlicek A, Ye J, Buckman D, Bagrodia S, Srinivasa SP, Zhao Y, Aparicio S, Rejto PA, Christensen JG, Ching KA", "reference": { "type": "PubMed", "id": "22745804", "url": "https://pubmed.ncbi.nlm.nih.gov/22745804" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08581-1", "protein_name": "Hepatocyte growth factor receptor", "gene_name": "MET", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 1235, "end_pos": 1235, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "P08581", "url": "https://www.uniprot.org/uniprotkb/P08581" }, { "database": "iPTMnet", "id": "P08581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08581" }, { "database": "PubMed", "id": "12475979", "url": "https://pubmed.ncbi.nlm.nih.gov/12475979" }, { "database": "IntAct", "id": "P08581", "url": "https://www.ebi.ac.uk/intact/interactors/id:P08581*" }, { "database": "PubMed", "id": "16101282", "url": "https://pubmed.ncbi.nlm.nih.gov/16101282" }, { "database": "PubMed", "id": "16914575", "url": "https://pubmed.ncbi.nlm.nih.gov/16914575" }, { "database": "PubMed", "id": "19240370", "url": "https://pubmed.ncbi.nlm.nih.gov/19240370" }, { "database": "PubMed", "id": "20085644", "url": "https://pubmed.ncbi.nlm.nih.gov/20085644" }, { "database": "PubMed", "id": "20623641", "url": "https://pubmed.ncbi.nlm.nih.gov/20623641" }, { "database": "PubMed", "id": "21119598", "url": "https://pubmed.ncbi.nlm.nih.gov/21119598" }, { "database": "PubMed", "id": "21247903", "url": "https://pubmed.ncbi.nlm.nih.gov/21247903" }, { "database": "PubMed", "id": "21423210", "url": "https://pubmed.ncbi.nlm.nih.gov/21423210" }, { "database": "PubMed", "id": "21992464", "url": "https://pubmed.ncbi.nlm.nih.gov/21992464" }, { "database": "PubMed", "id": "22511956", "url": "https://pubmed.ncbi.nlm.nih.gov/22511956" }, { "database": "PubMed", "id": "22745804", "url": "https://pubmed.ncbi.nlm.nih.gov/22745804" }, { "database": "PubMed", "id": "23968581", "url": "https://pubmed.ncbi.nlm.nih.gov/23968581" }, { "database": "PubMed", "id": "24362531", "url": "https://pubmed.ncbi.nlm.nih.gov/24362531" }, { "database": "PubMed", "id": "24634221", "url": "https://pubmed.ncbi.nlm.nih.gov/24634221" }, { "database": "PubMed", "id": "26252654", "url": "https://pubmed.ncbi.nlm.nih.gov/26252654" }, { "database": "PubMed", "id": "26801760", "url": "https://pubmed.ncbi.nlm.nih.gov/26801760" }, { "database": "PubMed", "id": "27191264", "url": "https://pubmed.ncbi.nlm.nih.gov/27191264" }, { "database": "PubMed", "id": "27323832", "url": "https://pubmed.ncbi.nlm.nih.gov/27323832" }, { "database": "PubMed", "id": "28248267", "url": "https://pubmed.ncbi.nlm.nih.gov/28248267" }, { "database": "PubMed", "id": "28332364", "url": "https://pubmed.ncbi.nlm.nih.gov/28332364" }, { "database": "PubMed", "id": "29254183", "url": "https://pubmed.ncbi.nlm.nih.gov/29254183" }, { "database": "PubMed", "id": "30638462", "url": "https://pubmed.ncbi.nlm.nih.gov/30638462" }, { "database": "PubMed", "id": "30999598", "url": "https://pubmed.ncbi.nlm.nih.gov/30999598" }, { "database": "PubMed", "id": "31072019", "url": "https://pubmed.ncbi.nlm.nih.gov/31072019" }, { "database": "PubMed", "id": "31440058", "url": "https://pubmed.ncbi.nlm.nih.gov/31440058" }, { "database": "PubMed", "id": "32565941", "url": "https://pubmed.ncbi.nlm.nih.gov/32565941" }, { "database": "PubMed", "id": "32650779", "url": "https://pubmed.ncbi.nlm.nih.gov/32650779" }, { "database": "PubMed", "id": "32782246", "url": "https://pubmed.ncbi.nlm.nih.gov/32782246" }, { "database": "PubMed", "id": "1655790", "url": "https://pubmed.ncbi.nlm.nih.gov/1655790" } ], "site_lbl": "Tyr1235", "uniprot_canonical_ac": "P08581-1" }, { "start_pos": 1349, "end_pos": 1349, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "P08581", "url": "https://www.uniprot.org/uniprotkb/P08581" }, { "database": "iPTMnet", "id": "P08581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08581" }, { "database": "PubMed", "id": "10069803", "url": "https://pubmed.ncbi.nlm.nih.gov/10069803" }, { "database": "PubMed", "id": "12475979", "url": "https://pubmed.ncbi.nlm.nih.gov/12475979" }, { "database": "PubMed", "id": "7708691", "url": "https://pubmed.ncbi.nlm.nih.gov/7708691" }, { "database": "PubMed", "id": "16914575", "url": "https://pubmed.ncbi.nlm.nih.gov/16914575" }, { "database": "PubMed", "id": "18046719", "url": "https://pubmed.ncbi.nlm.nih.gov/18046719" }, { "database": "PubMed", "id": "18779368", "url": "https://pubmed.ncbi.nlm.nih.gov/18779368" }, { "database": "PubMed", "id": "18930356", "url": "https://pubmed.ncbi.nlm.nih.gov/18930356" }, { "database": "PubMed", "id": "19187270", "url": "https://pubmed.ncbi.nlm.nih.gov/19187270" }, { "database": "PubMed", "id": "20432459", "url": "https://pubmed.ncbi.nlm.nih.gov/20432459" }, { "database": "PubMed", "id": "21283737", "url": "https://pubmed.ncbi.nlm.nih.gov/21283737" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "21777671", "url": "https://pubmed.ncbi.nlm.nih.gov/21777671" }, { "database": "PubMed", "id": "22745804", "url": "https://pubmed.ncbi.nlm.nih.gov/22745804" }, { "database": "PubMed", "id": "23583448", "url": "https://pubmed.ncbi.nlm.nih.gov/23583448" }, { "database": "PubMed", "id": "24362531", "url": "https://pubmed.ncbi.nlm.nih.gov/24362531" }, { "database": "PubMed", "id": "24634221", "url": "https://pubmed.ncbi.nlm.nih.gov/24634221" }, { "database": "PubMed", "id": "26215852", "url": "https://pubmed.ncbi.nlm.nih.gov/26215852" }, { "database": "PubMed", "id": "26259250", "url": "https://pubmed.ncbi.nlm.nih.gov/26259250" }, { "database": "PubMed", "id": "26436697", "url": "https://pubmed.ncbi.nlm.nih.gov/26436697" }, { "database": "PubMed", "id": "27191264", "url": "https://pubmed.ncbi.nlm.nih.gov/27191264" }, { "database": "PubMed", "id": "28332364", "url": "https://pubmed.ncbi.nlm.nih.gov/28332364" }, { "database": "PubMed", "id": "32565941", "url": "https://pubmed.ncbi.nlm.nih.gov/32565941" }, { "database": "PubMed", "id": "32782246", "url": "https://pubmed.ncbi.nlm.nih.gov/32782246" }, { "database": "PubMed", "id": "7513258", "url": "https://pubmed.ncbi.nlm.nih.gov/7513258" } ], "site_lbl": "Tyr1349", "uniprot_canonical_ac": "P08581-1" } ], "record_id": "pubmed.22745804", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 65 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cinaciguat, a soluble guanylate cyclase activator, unloads the heart but also causes hypotension in acute decompensated heart failure.", "journal": "European heart journal", "date": "2013", "authors": "Erdmann E, Semigran MJ, Nieminen MS, Gheorghiade M, Agrawal R, Mitrovic V, Mebazaa A", "reference": { "type": "PubMed", "id": "22778174", "url": "https://pubmed.ncbi.nlm.nih.gov/22778174" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22778174", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Increased BRAF heterodimerization is the common pathogenic mechanism for noonan syndrome-associated RAF1 mutants.", "journal": "Molecular and cellular biology", "date": "2012", "authors": "Wu X, Yin J, Simpson J, Kim KH, Gu S, Hong JH, Bayliss P, Backx PH, Neel BG, Araki T", "reference": { "type": "PubMed", "id": "22826437", "url": "https://pubmed.ncbi.nlm.nih.gov/22826437" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22826437", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Elucidating distinct roles for NF1 in melanomagenesis.", "journal": "Cancer discovery", "date": "2013", "authors": "Maertens O, Johnson B, Hollstein P, Frederick DT, Cooper ZA, Messiaen L, Bronson RT, McMahon M, Granter S, Flaherty K, Wargo JA, Marais R, Cichowski K", "reference": { "type": "PubMed", "id": "23171796", "url": "https://pubmed.ncbi.nlm.nih.gov/23171796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z698-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 2", "gene_name": "SPRED2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z699-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 1", "gene_name": "SPRED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2MJR0-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 3", "gene_name": "SPRED3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21359-1", "protein_name": "Neurofibromin", "gene_name": "NF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23171796", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A genome-scale RNA interference screen implicates NF1 loss in resistance to RAF inhibition.", "journal": "Cancer discovery", "date": "2013", "authors": "Whittaker SR, Theurillat JP, Van Allen E, Wagle N, Hsiao J, Cowley GS, Schadendorf D, Root DE, Garraway LA", "reference": { "type": "PubMed", "id": "23288408", "url": "https://pubmed.ncbi.nlm.nih.gov/23288408" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23288408", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effects of Raf dimerization and its inhibition on normal and disease-associated Raf signaling.", "journal": "Molecular cell", "date": "2013", "authors": "Freeman AK, Ritt DA, Morrison DK", "reference": { "type": "PubMed", "id": "23352452", "url": "https://pubmed.ncbi.nlm.nih.gov/23352452" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23352452", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selective requirement of PI3K/PDK1 signaling for Kras oncogene-driven pancreatic cell plasticity and cancer.", "journal": "Cancer cell", "date": "2013", "authors": "Eser S, Reiff N, Messer M, Seidler B, Gottschalk K, Dobler M, Hieber M, Arbeiter A, Klein S, Kong B, Michalski CW, Schlitter AM, Esposito I, Kind AJ, Rad L, Schnieke AE, Baccarini M, Alessi DR, Rad R, Schmid RM, Schneider G, Saur D", "reference": { "type": "PubMed", "id": "23453624", "url": "https://pubmed.ncbi.nlm.nih.gov/23453624" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23453624", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas.", "journal": "Nature genetics", "date": "2013", "authors": "Zhang J, Wu G, Miller CP, Tatevossian RG, Dalton JD, Tang B, Orisme W, Punchihewa C, Parker M, Qaddoumi I, Boop FA, Lu C, Kandoth C, Ding L, Lee R, Huether R, Chen X, Hedlund E, Nagahawatte P, Rusch M, Boggs K, Cheng J, Becksfort J, Ma J, Song G, Li Y, Wei L, Wang J, Shurtleff S, Easton J, Zhao D, Fulton RS, Fulton LL, Dooling DJ, Vadodaria B, Mulder HL, Tang C, Ochoa K, Mullighan CG, Gajjar A, Kriwacki R, Sheer D, Gilbertson RJ, Mardis ER, Wilson RK, Downing JR, Baker SJ, Ellison DW", "reference": { "type": "PubMed", "id": "23583981", "url": "https://pubmed.ncbi.nlm.nih.gov/23583981" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23583981", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAF inhibitors activate the MAPK pathway by relieving inhibitory autophosphorylation.", "journal": "Cancer cell", "date": "2013", "authors": "Holderfield M, Merritt H, Chan J, Wallroth M, Tandeske L, Zhai H, Tellew J, Hardy S, Hekmat-Nejad M, Stuart DD, McCormick F, Nagel TE", "reference": { "type": "PubMed", "id": "23680146", "url": "https://pubmed.ncbi.nlm.nih.gov/23680146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23680146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Low threshold T-type calcium channels as targets for novel epilepsy treatments.", "journal": "British journal of clinical pharmacology", "date": "2014", "authors": "Powell KL, Cain SM, Snutch TP, O'Brien TJ", "reference": { "type": "PubMed", "id": "23834404", "url": "https://pubmed.ncbi.nlm.nih.gov/23834404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23834404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The RASopathies.", "journal": "Annual review of genomics and human genetics", "date": "2013", "authors": "Rauen KA", "reference": { "type": "PubMed", "id": "23875798", "url": "https://pubmed.ncbi.nlm.nih.gov/23875798" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23875798", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 41 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MEK in cancer and cancer therapy.", "journal": "Pharmacology & therapeutics", "date": "2014", "authors": "Neuzillet C, Tijeras-Raballand A, de Mestier L, Cros J, Faivre S, Raymond E", "reference": { "type": "PubMed", "id": "24121058", "url": "https://pubmed.ncbi.nlm.nih.gov/24121058" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24121058", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers.", "journal": "The Journal of clinical investigation", "date": "2013", "authors": "Ricarte-Filho JC, Li S, Garcia-Rendueles ME, Montero-Conde C, Voza F, Knauf JA, Heguy A, Viale A, Bogdanova T, Thomas GA, Mason CE, Fagin JA", "reference": { "type": "PubMed", "id": "24135138", "url": "https://pubmed.ncbi.nlm.nih.gov/24135138" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24135138", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tumor adaptation and resistance to RAF inhibitors.", "journal": "Nature medicine", "date": "2013", "authors": "Lito P, Rosen N, Solit DB", "reference": { "type": "PubMed", "id": "24202393", "url": "https://pubmed.ncbi.nlm.nih.gov/24202393" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24202393", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BRAF fusions define a distinct molecular subset of melanomas with potential sensitivity to MEK inhibition.", "journal": "Clinical cancer research : an official journal of the American Association for Cancer Research", "date": "2013", "authors": "Hutchinson KE, Lipson D, Stephens PJ, Otto G, Lehmann BD, Lyle PL, Vnencak-Jones CL, Ross JS, Pietenpol JA, Sosman JA, Puzanov I, Miller VA, Pao W", "reference": { "type": "PubMed", "id": "24345920", "url": "https://pubmed.ncbi.nlm.nih.gov/24345920" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24345920", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dragging ras back in the ring.", "journal": "Cancer cell", "date": "2014", "authors": "Stephen AG, Esposito D, Bagni RK, McCormick F", "reference": { "type": "PubMed", "id": "24651010", "url": "https://pubmed.ncbi.nlm.nih.gov/24651010" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24651010", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Talin1 phosphorylation activates beta1 integrins: a novel mechanism to promote prostate cancer bone metastasis.", "journal": "Oncogene", "date": "2015", "authors": "Jin JK, Tien PC, Cheng CJ, Song JH, Huang C, Lin SH, Gallick GE", "reference": { "type": "PubMed", "id": "24793790", "url": "https://pubmed.ncbi.nlm.nih.gov/24793790" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 425, "end_pos": 425, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "iPTMnet", "id": "Q9Y490", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Y490" }, { "database": "PubMed", "id": "18088087", "url": "https://pubmed.ncbi.nlm.nih.gov/18088087" }, { "database": "PubMed", "id": "18452278", "url": "https://pubmed.ncbi.nlm.nih.gov/18452278" }, { "database": "PubMed", "id": "19415658", "url": "https://pubmed.ncbi.nlm.nih.gov/19415658" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "19363486", "url": "https://pubmed.ncbi.nlm.nih.gov/19363486" }, { "database": "PubMed", "id": "24793790", "url": "https://pubmed.ncbi.nlm.nih.gov/24793790" }, { "database": "PubMed", "id": "31108958", "url": "https://pubmed.ncbi.nlm.nih.gov/31108958" } ], "site_lbl": "Ser425", "uniprot_canonical_ac": "Q9Y490-1" } ], "record_id": "pubmed.24793790", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Calcium channel blockers in cardiovascular pharmacotherapy.", "journal": "Journal of cardiovascular pharmacology and therapeutics", "date": "2014", "authors": "Godfraind T", "reference": { "type": "PubMed", "id": "24872348", "url": "https://pubmed.ncbi.nlm.nih.gov/24872348" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24872348", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeting RAF kinases for cancer therapy: BRAF-mutated melanoma and beyond.", "journal": "Nature reviews. Cancer", "date": "2014", "authors": "Holderfield M, Deuker MM, McCormick F, McMahon M", "reference": { "type": "PubMed", "id": "24957944", "url": "https://pubmed.ncbi.nlm.nih.gov/24957944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24957944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HCMV pUL135 remodels the actin cytoskeleton to impair immune recognition of infected cells.", "journal": "Cell Host Microbe", "date": "2014", "authors": "Stanton Richard J, Prod'homme Virginie, Purbhoo Marco A, Moore Melanie, Aicheler Rebecca J, Heinzmann Marcus, Bailer Susanne M, Haas J\u00fcrgen, Antrobus Robin, Weekes Michael P, Lehner Paul J, Vojtesek Borivoj, Miners Kelly L, Man Stephen, Wilkie Gavin S, Davison Andrew J, Wang Eddie C Y, Tomasec Peter, Wilkinson Gavin W G", "reference": { "type": "PubMed", "id": "25121749", "url": "https://pubmed.ncbi.nlm.nih.gov/25121749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2A7-1", "protein_name": "Nck-associated protein 1", "gene_name": "NCKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W5-1", "protein_name": "Actin-binding protein WASF2", "gene_name": "WASF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZP0-1", "protein_name": "Abl interactor 1", "gene_name": "ABI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYB9-1", "protein_name": "Abl interactor 2", "gene_name": "ABI2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25121749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The landscape of kinase fusions in cancer.", "journal": "Nature communications", "date": "2014", "authors": "Stransky N, Cerami E, Schalm S, Kim JL, Lengauer C", "reference": { "type": "PubMed", "id": "25204415", "url": "https://pubmed.ncbi.nlm.nih.gov/25204415" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25204415", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and differential expression of human vascular smooth muscle myosin light chain 2 isoform in nonmuscle cells.", "journal": "Biochemistry", "date": "1989", "authors": "Kumar CC, Mohan SR, Zavodny PJ, Narula SK, Leibowitz PJ", "reference": { "type": "PubMed", "id": "2526655", "url": "https://pubmed.ncbi.nlm.nih.gov/2526655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2526655", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of RAF protein kinases in ERK signalling.", "journal": "Nature reviews. Molecular cell biology", "date": "2015", "authors": "Lavoie H, Therrien M", "reference": { "type": "PubMed", "id": "25907612", "url": "https://pubmed.ncbi.nlm.nih.gov/25907612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N302-1", "protein_name": "Angiogenic factor with G patch and FHA domains 1", "gene_name": "AGGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51797-1", "protein_name": "H(+)/Cl(-) exchange transporter 6", "gene_name": "CLCN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62714-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform", "gene_name": "PPP2CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2W4-1", "protein_name": "Zinc finger CCCH-type antiviral protein 1", "gene_name": "ZC3HAV1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36873-1", "protein_name": "Serine/threonine-protein phosphatase PP1-gamma catalytic subunit", "gene_name": "PPP1CC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU8-1", "protein_name": "KH domain-containing RNA-binding protein QKI", "gene_name": "QKI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35232-1", "protein_name": "Prohibitin 1", "gene_name": "PHB1; PHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30086-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM3-1", "protein_name": "UPF0606 protein KIAA1549", "gene_name": "KIAA1549", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ13-1", "protein_name": "Leucine-rich repeat protein SHOC-2", "gene_name": "SHOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43252-1", "protein_name": "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1", "gene_name": "PAPSS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XG87-1", "protein_name": "Terminal nucleotidyltransferase 4A", "gene_name": "TENT4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16537-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform", "gene_name": "PPP2R5E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15172-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform", "gene_name": "PPP2R5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6RW13-1", "protein_name": "Type-1 angiotensin II receptor-associated protein", "gene_name": "AGTRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z569-1", "protein_name": "BRCA1-associated protein", "gene_name": "BRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRY5-1", "protein_name": "Protein FAM114A2", "gene_name": "FAM114A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZF4-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "SND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV9-1", "protein_name": "Trafficking kinesin-binding protein 1", "gene_name": "TRAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14807-1", "protein_name": "Ras-related protein M-Ras", "gene_name": "MRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01116-1", "protein_name": "GTPase KRas", "gene_name": "KRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16584-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 11", "gene_name": "MAP3K11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD5-1", "protein_name": "Protein FAM131B", "gene_name": "FAM131B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15164-1", "protein_name": "Transcription intermediary factor 1-alpha", "gene_name": "TRIM24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51114-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "FXR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WCQ1-1", "protein_name": "Myosin phosphatase Rho-interacting protein", "gene_name": "MPRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30154-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform", "gene_name": "PPP2R1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14738-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform", "gene_name": "PPP2R5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13362-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform", "gene_name": "PPP2R5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15173-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform", "gene_name": "PPP2R5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25907612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas.", "journal": "Nature genetics", "date": "2015", "authors": "Krauthammer M, Kong Y, Bacchiocchi A, Evans P, Pornputtapong N, Wu C, McCusker JP, Ma S, Cheng E, Straub R, Serin M, Bosenberg M, Ariyan S, Narayan D, Sznol M, Kluger HM, Mane S, Schlessinger J, Lifton RP, Halaban R", "reference": { "type": "PubMed", "id": "26214590", "url": "https://pubmed.ncbi.nlm.nih.gov/26214590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36507-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 2", "gene_name": "MAP2K2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z698-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 2", "gene_name": "SPRED2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32121-1", "protein_name": "Beta-arrestin-2", "gene_name": "ARRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H4-1", "protein_name": "Connector enhancer of kinase suppressor of ras 1", "gene_name": "CNKSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI2-1", "protein_name": "Connector enhancer of kinase suppressor of ras 2", "gene_name": "CNKSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02750-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "MAP2K1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z699-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 1", "gene_name": "SPRED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2MJR0-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 3", "gene_name": "SPRED3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VAB6-1", "protein_name": "Kinase suppressor of Ras 2", "gene_name": "KSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21359-1", "protein_name": "Neurofibromin", "gene_name": "NF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15056-1", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31946-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26214590", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Physiology, Pathology, and Pharmacology of Voltage-Gated Calcium Channels and Their Future Therapeutic Potential.", "journal": "Pharmacological reviews", "date": "2015", "authors": "Zamponi GW, Striessnig J, Koschak A, Dolphin AC", "reference": { "type": "PubMed", "id": "26362469", "url": "https://pubmed.ncbi.nlm.nih.gov/26362469" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26362469", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Receptor Activity-modifying Protein-directed G Protein Signaling Specificity for the Calcitonin Gene-related Peptide Family of Receptors.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Weston C, Winfield I, Harris M, Hodgson R, Shah A, Dowell SJ, Mobarec JC, Woodlock DA, Reynolds CA, Poyner DR, Watkins HA, Ladds G", "reference": { "type": "PubMed", "id": "27566546", "url": "https://pubmed.ncbi.nlm.nih.gov/27566546" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27566546", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 69 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The distribution of heavy-chain isoforms of myosin in airways smooth muscle from adult and neonate humans.", "journal": "The Biochemical journal", "date": "1989", "authors": "Mohammad MA, Sparrow MP", "reference": { "type": "PubMed", "id": "2764880", "url": "https://pubmed.ncbi.nlm.nih.gov/2764880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2764880", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Formation of Nitric Oxide by Aldehyde Dehydrogenase-2 Is Necessary and Sufficient for Vascular Bioactivation of Nitroglycerin.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Opelt M, Eroglu E, Waldeck-Weiermair M, Russwurm M, Koesling D, Malli R, Graier WF, Fassett JT, Schrammel A, Mayer B", "reference": { "type": "PubMed", "id": "27679490", "url": "https://pubmed.ncbi.nlm.nih.gov/27679490" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20000-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27679490", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "THSD1 (thrombospondin type 1 domain containing protein 1) mutation in the pathogenesis of intracranial aneurysm and subarachnoid emorrhage.", "journal": "Stroke", "date": "2016", "authors": "Santiago-Sim T, Fang X, Hennessy ML, Nalbach SV, DePalma SR, Lee MS, Greenway SC, McDonough B, Hergenroeder GW, Patek KJ, Colosimo SM, Qualmann KJ, Hagan JP, Milewicz DM, MacRae CA, Dymecki SM, Seidman CE, Seidman JG, Kim DH", "reference": { "type": "PubMed", "id": "27895300", "url": "https://pubmed.ncbi.nlm.nih.gov/27895300" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JM61-1", "protein_name": "Thrombospondin type-1 domain-containing protein 1", "gene_name": "Thsd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NS62-1", "protein_name": "Thrombospondin type-1 domain-containing protein 1", "gene_name": "THSD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27895300", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptome profile of the human placenta.", "journal": "Funct. Integr. Genomics", "date": "2017", "authors": "Majewska Marta, Lipka Aleksandra, Paukszto Lukasz, Jastrzebski Jan Pawel, Myszczynski Kamil, Gowkielewicz Marek, Jozwik Marcin, Majewski Mariusz Krzysztof", "reference": { "type": "PubMed", "id": "28251419", "url": "https://pubmed.ncbi.nlm.nih.gov/28251419" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28251419", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Direct comparison of tadalafil with sildenafil for the treatment of erectile dysfunction: a systematic review and meta-analysis.", "journal": "International urology and nephrology", "date": "2017", "authors": "Gong B, Ma M, Xie W, Yang X, Huang Y, Sun T, Luo Y, Huang J", "reference": { "type": "PubMed", "id": "28741090", "url": "https://pubmed.ncbi.nlm.nih.gov/28741090" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28741090", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Intracranial Aneurysm Gene THSD1 Connects Endosome Dynamics to Nascent Focal Adhesion Assembly.", "journal": "Cell. Physiol. Biochem.", "date": "2017", "authors": "Rui YN, Xu Z, Fang X, Menezes MR, Balzeau J, Niu A, Hagan JP, Kim DH", "reference": { "type": "PubMed", "id": "29069646", "url": "https://pubmed.ncbi.nlm.nih.gov/29069646" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS62-1", "protein_name": "Thrombospondin type-1 domain-containing protein 1", "gene_name": "THSD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29069646", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "O-GlcNAcylation regulates integrin-mediated cell adhesion and migration via formation of focal adhesion complexes.", "journal": "The Journal of biological chemistry", "date": "2019", "authors": "Xu Z, Isaji T, Fukuda T, Wang Y, Gu J", "reference": { "type": "PubMed", "id": "30587575", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1021, "start_aa": "Ser", "end_pos": 1021, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser1021", "evidence": [ { "id": "32119511", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32119511" }, { "id": "Q9Y490", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Y490" }, { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "33465208", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33465208" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "40914422", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40914422" }, { "id": "26853435", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26853435" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "34229054", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34229054" }, { "id": "35138101", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35138101" }, { "id": "25367160", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25367160" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "Q9Y490", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9Y490" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01011", "uniprot_canonical_ac": "Q9Y490-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 167, "start_aa": "Thr", "end_pos": 167, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr167", "evidence": [ { "id": "32119511", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32119511" }, { "id": "Q9Y490", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Y490" }, { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "33465208", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33465208" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "40914422", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40914422" }, { "id": "26853435", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26853435" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "34229054", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34229054" }, { "id": "35138101", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35138101" }, { "id": "25367160", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25367160" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "Q9Y490", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9Y490" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01010", "uniprot_canonical_ac": "Q9Y490-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1752, "start_aa": "Thr", "end_pos": 1752, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1752", "evidence": [ { "id": "32119511", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32119511" }, { "id": "Q9Y490", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Y490" }, { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "33465208", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33465208" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "40914422", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40914422" }, { "id": "26853435", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26853435" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "34229054", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34229054" }, { "id": "35138101", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35138101" }, { "id": "25367160", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25367160" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "Q9Y490", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9Y490" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "Q9Y490-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 179, "start_aa": "Thr", "end_pos": 179, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr179", "evidence": [ { "id": "32119511", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32119511" }, { "id": "Q9Y490", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Y490" }, { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "33465208", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33465208" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "40914422", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40914422" }, { "id": "26853435", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26853435" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "34229054", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34229054" }, { "id": "35138101", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35138101" }, { "id": "25367160", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25367160" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "Q9Y490", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9Y490" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "Q9Y490-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "Q05397", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q05397" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "28510447", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28510447" }, { "id": "29485866", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29485866" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" } ], "filter_code": "000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "Q05397-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 74, "start_aa": "Ser", "end_pos": 74, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser74", "evidence": [ { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "P49023", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P49023" }, { "id": "16408927", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16408927" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "31492838", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31492838" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "20829364", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20829364" }, { "id": "39894887", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39894887" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "16212439", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16212439" }, { "id": "P49023", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P49023" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P49023-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 83, "start_aa": "Ser", "end_pos": 83, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser83", "evidence": [ { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "P49023", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P49023" }, { "id": "16408927", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16408927" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "31492838", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31492838" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "20829364", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20829364" }, { "id": "39894887", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39894887" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "P49023", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P49023" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01011", "uniprot_canonical_ac": "P49023-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 84, "start_aa": "Ser", "end_pos": 84, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser84", "evidence": [ { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "P49023", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P49023" }, { "id": "16408927", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16408927" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "31492838", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31492838" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "20829364", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20829364" }, { "id": "39894887", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39894887" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "P49023", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P49023" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P49023-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 85, "start_aa": "Ser", "end_pos": 85, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser85", "evidence": [ { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "P49023", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P49023" }, { "id": "16408927", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16408927" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "31492838", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31492838" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "20829364", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20829364" }, { "id": "39894887", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39894887" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "P49023", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P49023" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01010", "uniprot_canonical_ac": "P49023-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 90, "start_aa": "Ser", "end_pos": 90, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser90", "evidence": [ { "id": "30587575", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30587575" }, { "id": "P49023", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P49023" }, { "id": "16408927", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16408927" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "31492838", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31492838" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "39302247", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39302247" }, { "id": "20829364", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20829364" }, { "id": "39894887", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39894887" }, { "id": "34725712", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34725712" }, { "id": "P49023", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P49023" }, { "id": "35513511", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35513511" }, { "id": "39534244", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39534244" }, { "id": "31373491", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31373491" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P49023-1" } ], "record_id": "pubmed.30587575", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 10 }, { "field": "total_sites", "count": 10 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 10 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 10 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 9 }, { "field": "exact_o_linked_sites", "count": 9 }, { "field": "exact_o_linked_glycan_sites", "count": 9 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 10 }, { "field": "total_sites", "count": 10 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 10 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 10 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 9 }, { "field": "exact_o_linked_sites", "count": 9 }, { "field": "exact_o_linked_glycan_sites", "count": 9 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphoproteomic Profiling Identifies Aberrant Activation of Integrin Signaling in Aggressive Non-Type Bladder Carcinoma.", "journal": "Journal of clinical medicine", "date": "2019", "authors": "Deb B, Puttamallesh VN, Gondkar K, Thiery JP, Gowda H, Kumar P", "reference": { "type": "PubMed", "id": "31108958", "url": "https://pubmed.ncbi.nlm.nih.gov/31108958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 425, "end_pos": 425, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "iPTMnet", "id": "Q9Y490", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Y490" }, { "database": "PubMed", "id": "18088087", "url": "https://pubmed.ncbi.nlm.nih.gov/18088087" }, { "database": "PubMed", "id": "18452278", "url": "https://pubmed.ncbi.nlm.nih.gov/18452278" }, { "database": "PubMed", "id": "19415658", "url": "https://pubmed.ncbi.nlm.nih.gov/19415658" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "19363486", "url": "https://pubmed.ncbi.nlm.nih.gov/19363486" }, { "database": "PubMed", "id": "24793790", "url": "https://pubmed.ncbi.nlm.nih.gov/24793790" }, { "database": "PubMed", "id": "31108958", "url": "https://pubmed.ncbi.nlm.nih.gov/31108958" } ], "site_lbl": "Ser425", "uniprot_canonical_ac": "Q9Y490-1" } ], "record_id": "pubmed.31108958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Shear stress-induced endothelial adrenomedullin signaling regulates vascular tone and blood pressure.", "journal": "The Journal of clinical investigation", "date": "2019", "authors": "Iring A, Jin YJ, Albarran-Juarez J, Siragusa M, Wang S, Dancs PT, Nakayama A, Tonack S, Chen M, Kunne C, Sokol AM, Gunther S, Martinez A, Fleming I, Wettschureck N, Graumann J, Weinstein LS, Offermanns S", "reference": { "type": "PubMed", "id": "31205027", "url": "https://pubmed.ncbi.nlm.nih.gov/31205027" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.31205027", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 69 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and Dynamics of Adrenomedullin Receptors AM1 and AM2 Reveal Key Mechanisms in the Control of Receptor Phenotype by Receptor Activity-Modifying Proteins.", "journal": "ACS pharmacology & translational science", "date": "2020-04-10", "authors": "Liang Yi-Lynn, Belousoff Matthew J, Fletcher Madeleine M, Zhang Xin, Khoshouei Maryam, Deganutti Giuseppe, Koole Cassandra, Furness Sebastian G B, Miller Laurence J, Hay Debbie L, Christopoulos Arthur, Reynolds Christopher A, Danev Radostin, Wootten Denise, Sexton Patrick M", "reference": { "type": "PubMed", "id": "32296767", "url": "https://pubmed.ncbi.nlm.nih.gov/32296767" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H4-1", "protein_name": "Protein ADM2", "gene_name": "ADM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60896-1", "protein_name": "Receptor activity-modifying protein 3", "gene_name": "RAMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32296767", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein kinase N2 mediates flow-induced endothelial NOS activation and vascular tone regulation.", "journal": "The Journal of clinical investigation", "date": "2021", "authors": "Jin YJ, Chennupati R, Li R, Liang G, Wang S, Iring A, Graumann J, Wettschureck N, Offermanns S", "reference": { "type": "PubMed", "id": "34499618", "url": "https://pubmed.ncbi.nlm.nih.gov/34499618" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BWW9-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "Pkn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34499618", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 70 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Talin1 regulates glucose metabolism and endometrial receptivity via GLUT-4 in patients with polycystic ovary syndrome and insulin resistance.", "journal": "Gynecological endocrinology : the official journal of the International Society of Gynecological Endocrinology", "date": "2023-12", "authors": "Li Jingjing, Chen Saiqiong, Qin Rongyan, Liu Xin, Fan Li, Wei Mengjun, Wei Jiajia, Lin Jiajing, Zheng Fengque", "reference": { "type": "PubMed", "id": "37395213", "url": "https://pubmed.ncbi.nlm.nih.gov/37395213" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37395213", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BCKDK regulates breast cancer cell adhesion and tumor metastasis by inhibiting TRIM21 ubiquitinate talin1.", "journal": "Cell death & disease", "date": "2023-07-17", "authors": "Xu Chunlan, Yang Kunao, Xuan Zuodong, Li Jinxin, Liu Yankuo, Zhao Yue, Zheng Zeyuan, Bai Yang, Shi Zhiyuan, Shao Chen, Zhang Lei, Sun Huimin", "reference": { "type": "PubMed", "id": "37460470", "url": "https://pubmed.ncbi.nlm.nih.gov/37460470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14874-1", "protein_name": "Branched-chain alpha-ketoacid dehydrogenase kinase", "gene_name": "BCKDK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37460470", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isoforms of myosin and actin in human, monkey and rat myometrium. Comparison of pregnant and non-pregnant uterus proteins.", "journal": "European journal of biochemistry", "date": "1986", "authors": "Cavaille F, Janmot C, Ropert S, d'Albis A", "reference": { "type": "PubMed", "id": "3780718", "url": "https://pubmed.ncbi.nlm.nih.gov/3780718" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3780718", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HDAC1/2 control mesothelium/ovarian cancer adhesive interactions impacting on Talin-1-\u03b15\u03b21-integrin-mediated actin cytoskeleton and extracellular matrix protein remodeling.", "journal": "Journal of experimental & clinical cancer research : CR", "date": "2024-01-23", "authors": "Terri Michela, Sandoval Pilar, Bontempi Giulio, Montaldo Claudia, Tomero-Sanz Henar, de Turris Valeria, Trionfetti Flavia, Pascual-Ant\u00f3n Luc\u00eda, Clares-Pedrero Irene, Battistelli Cecilia, Valente Sergio, Zwergel Clemens, Mai Antonello, Rosan\u00f2 Laura, Del Pozo Miguel \u00c1ngel, S\u00e1nchez-\u00c1lvarez Miguel, Caba\u00f1as Carlos, Tripodi Marco, L\u00f3pez-Cabrera Manuel, Strippoli Raffaele", "reference": { "type": "PubMed", "id": "38254102", "url": "https://pubmed.ncbi.nlm.nih.gov/38254102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38254102", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Integrin activating molecule-talin1 promotes skin fibrosis in systemic sclerosis.", "journal": "Frontiers in immunology", "date": "2024", "authors": "Xu Dan, Yuan Xiandun, Li Zhaohua, Mu Rong", "reference": { "type": "PubMed", "id": "38863696", "url": "https://pubmed.ncbi.nlm.nih.gov/38863696" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38863696", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Syk activation by the Src-family tyrosine kinase in the B cell receptor signaling.", "journal": "The Journal of experimental medicine", "date": "1994", "authors": "Kurosaki T, Takata M, Yamanashi Y, Inazu T, Taniguchi T, Yamamoto T, Yamamura H", "reference": { "type": "PubMed", "id": "7513017", "url": "https://pubmed.ncbi.nlm.nih.gov/7513017" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43405-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LDG7-1", "protein_name": "RAS guanyl-releasing protein 2", "gene_name": "RASGRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WZA2-1", "protein_name": "Rap guanine nucleotide exchange factor 4", "gene_name": "RAPGEF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95398-1", "protein_name": "Rap guanine nucleotide exchange factor 3", "gene_name": "RAPGEF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18031-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 1", "gene_name": "PTPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00655-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P25911-1", "protein_name": "Tyrosine-protein kinase Lyn", "gene_name": "Lyn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48025-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "Syk", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95267-1", "protein_name": "RAS guanyl-releasing protein 1", "gene_name": "RASGRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7513017", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and sequencing of the cDNA encoding human P5.", "journal": "Gene", "date": "1995", "authors": "Hayano T, Kikuchi M", "reference": { "type": "PubMed", "id": "7590364", "url": "https://pubmed.ncbi.nlm.nih.gov/7590364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14773-1", "protein_name": "Tripeptidyl-peptidase 1", "gene_name": "TPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14203-1", "protein_name": "Dynactin subunit 1", "gene_name": "DCTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "ARFGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C869-1", "protein_name": "Cytosolic phospholipase A2 beta", "gene_name": "PLA2G4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS3-1", "protein_name": "DnaJ homolog subfamily B member 9", "gene_name": "DNAJB9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14554-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS4-1", "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95070-1", "protein_name": "Protein YIF1A", "gene_name": "YIF1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14999-1", "protein_name": "Cullin-7", "gene_name": "CUL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14653-1", "protein_name": "Golgi SNAP receptor complex member 2", "gene_name": "GOSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWM8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP14", "gene_name": "FKBP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2G4-1", "protein_name": "Testis-specific Y-encoded-like protein 2", "gene_name": "TSPYL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14595-1", "protein_name": "Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2", "gene_name": "CTDSP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U4-1", "protein_name": "CXXC-type zinc finger protein 1", "gene_name": "CXXC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43731-1", "protein_name": "ER lumen protein-retaining receptor 3", "gene_name": "KDELR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DMM9-1", "protein_name": "Sulfotransferase 1A3", "gene_name": "SULT1A3; SULT1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06210-1", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "GFPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49840-1", "protein_name": "Glycogen synthase kinase-3 alpha", "gene_name": "GSK3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92611-1", "protein_name": "ER degradation-enhancing alpha-mannosidase-like protein 1", "gene_name": "EDEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13105-1", "protein_name": "Zinc finger and BTB domain-containing protein 17", "gene_name": "ZBTB17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU5-1", "protein_name": "Guanine nucleotide-exchange factor SEC12", "gene_name": "PREB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51858-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "HDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15084-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "PDIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93075-1", "protein_name": "3'-5' RNA nuclease TATDN2", "gene_name": "TATDN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X1-1", "protein_name": "Stress-associated endoplasmic reticulum protein 1", "gene_name": "SERP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5MNZ9-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 1", "gene_name": "WIPI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92935-1", "protein_name": "Exostosin-like 1", "gene_name": "EXTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76024-1", "protein_name": "Wolframin", "gene_name": "WFS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61421-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "ATP6V0D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49748-1", "protein_name": "Very long-chain acyl-CoA dehydrogenase, mitochondrial", "gene_name": "ACADVL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H8-1", "protein_name": "Myeloid-derived growth factor", "gene_name": "MYDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35611-1", "protein_name": "Alpha-adducin", "gene_name": "ADD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15173-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform", "gene_name": "PPP2R5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7590364", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Site-directed mutagenesis of P2U purinoceptors. Positively charged amino acids in transmembrane helices 6 and 7 affect agonist potency and specificity.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Erb L, Garrad R, Wang Y, Quinn T, Turner JT, Weisman GA", "reference": { "type": "PubMed", "id": "7876172", "url": "https://pubmed.ncbi.nlm.nih.gov/7876172" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35383-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2ry2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 107, "end_pos": 107, "sequence_org": "K", "sequence_mut": "I", "comment": "No effect on receptor activation.", "evidence": [ { "database": "UniProtKB", "id": "P35383", "url": "https://www.uniprot.org/uniprotkb/P35383" }, { "database": "PubMed", "id": "7876172", "url": "https://pubmed.ncbi.nlm.nih.gov/7876172" } ], "uniprot_canonical_ac": "P35383-1" }, { "start_pos": 110, "end_pos": 110, "sequence_org": "R", "sequence_mut": "L", "comment": "No effect on receptor activation.", "evidence": [ { "database": "UniProtKB", "id": "P35383", "url": "https://www.uniprot.org/uniprotkb/P35383" }, { "database": "PubMed", "id": "7876172", "url": "https://pubmed.ncbi.nlm.nih.gov/7876172" } ], "uniprot_canonical_ac": "P35383-1" }, { "start_pos": 262, "end_pos": 262, "sequence_org": "H", "sequence_mut": "L", "comment": "Decrease in receptor activation.", "evidence": [ { "database": "UniProtKB", "id": "P35383", "url": "https://www.uniprot.org/uniprotkb/P35383" }, { "database": "PubMed", "id": "7876172", "url": "https://pubmed.ncbi.nlm.nih.gov/7876172" } ], "uniprot_canonical_ac": "P35383-1" }, { "start_pos": 265, "end_pos": 265, "sequence_org": "R", "sequence_mut": "L", "comment": "Decrease in receptor activation.", "evidence": [ { "database": "UniProtKB", "id": "P35383", "url": "https://www.uniprot.org/uniprotkb/P35383" }, { "database": "PubMed", "id": "7876172", "url": "https://pubmed.ncbi.nlm.nih.gov/7876172" } ], "uniprot_canonical_ac": "P35383-1" }, { "start_pos": 289, "end_pos": 289, "sequence_org": "K", "sequence_mut": "I", "comment": "No effect on receptor activation.", "evidence": [ { "database": "UniProtKB", "id": "P35383", "url": "https://www.uniprot.org/uniprotkb/P35383" }, { "database": "PubMed", "id": "7876172", "url": "https://pubmed.ncbi.nlm.nih.gov/7876172" } ], "uniprot_canonical_ac": "P35383-1" }, { "start_pos": 292, "end_pos": 292, "sequence_org": "R", "sequence_mut": "L", "comment": "Decrease in receptor activation.", "evidence": [ { "database": "UniProtKB", "id": "P35383", "url": "https://www.uniprot.org/uniprotkb/P35383" }, { "database": "PubMed", "id": "7876172", "url": "https://pubmed.ncbi.nlm.nih.gov/7876172" } ], "uniprot_canonical_ac": "P35383-1" } ], "record_id": "pubmed.7876172", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 70 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Integrin-mediated signal transduction linked to Ras pathway by GRB2 binding to focal adhesion kinase.", "journal": "Nature", "date": "1994", "authors": "Schlaepfer DD, Hanks SK, Hunter T, van der Geer P", "reference": { "type": "PubMed", "id": "7997267", "url": "https://pubmed.ncbi.nlm.nih.gov/7997267" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q60631-1", "protein_name": "Growth factor receptor-bound protein 2", "gene_name": "Grb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P34152-3", "protein_name": "Focal adhesion kinase 1", "gene_name": "Ptk2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75582-1", "protein_name": "Ribosomal protein S6 kinase alpha-5", "gene_name": "RPS6KA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01111-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01082-1", "protein_name": "Spectrin beta chain, non-erythrocytic 1", "gene_name": "SPTBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H254-1", "protein_name": "Spectrin beta chain, non-erythrocytic 4", "gene_name": "SPTBN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11277-1", "protein_name": "Spectrin beta chain, erythrocytic", "gene_name": "SPTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRC6-1", "protein_name": "Spectrin beta chain, non-erythrocytic 5", "gene_name": "SPTBN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07889-1", "protein_name": "Son of sevenless homolog 1", "gene_name": "SOS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02549-1", "protein_name": "Spectrin alpha chain, erythrocytic 1", "gene_name": "SPTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18433-5", "protein_name": "Receptor-type tyrosine-protein phosphatase alpha", "gene_name": "PTPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15020-1", "protein_name": "Spectrin beta chain, non-erythrocytic 2", "gene_name": "SPTBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13813-1", "protein_name": "Spectrin alpha chain, non-erythrocytic 1", "gene_name": "SPTAN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 925, "end_pos": 925, "sequence_org": "Y", "sequence_mut": "F", "comment": "Abolishes interaction with GRB2.", "evidence": [ { "database": "UniProtKB", "id": "P34152", "url": "https://www.uniprot.org/uniprotkb/P34152" }, { "database": "PubMed", "id": "7997267", "url": "https://pubmed.ncbi.nlm.nih.gov/7997267" }, { "database": "PubMed", "id": "8816475", "url": "https://pubmed.ncbi.nlm.nih.gov/8816475" } ], "uniprot_canonical_ac": "P34152-3" } ], "phosphorylation": [ { "start_pos": 925, "end_pos": 925, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P34152", "url": "https://www.uniprot.org/uniprotkb/P34152" }, { "database": "IntAct", "id": "P34152", "url": "https://www.ebi.ac.uk/intact/interactors/id:P34152*" }, { "database": "iPTMnet", "id": "P34152", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34152" }, { "database": "PubMed", "id": "7997267", "url": "https://pubmed.ncbi.nlm.nih.gov/7997267" }, { "database": "PubMed", "id": "9148935", "url": "https://pubmed.ncbi.nlm.nih.gov/9148935" }, { "database": "PubMed", "id": "8816475", "url": "https://pubmed.ncbi.nlm.nih.gov/8816475" }, { "database": "PubMed", "id": "11420674", "url": "https://pubmed.ncbi.nlm.nih.gov/11420674" }, { "database": "PubMed", "id": "11468287", "url": "https://pubmed.ncbi.nlm.nih.gov/11468287" }, { "database": "PubMed", "id": "16293639", "url": "https://pubmed.ncbi.nlm.nih.gov/16293639" }, { "database": "PubMed", "id": "16682956", "url": "https://pubmed.ncbi.nlm.nih.gov/16682956" }, { "database": "PubMed", "id": "16828471", "url": "https://pubmed.ncbi.nlm.nih.gov/16828471" }, { "database": "PubMed", "id": "18356303", "url": "https://pubmed.ncbi.nlm.nih.gov/18356303" }, { "database": "PubMed", "id": "21289086", "url": "https://pubmed.ncbi.nlm.nih.gov/21289086" }, { "database": "PubMed", "id": "21535874", "url": "https://pubmed.ncbi.nlm.nih.gov/21535874" }, { "database": "PubMed", "id": "22128142", "url": "https://pubmed.ncbi.nlm.nih.gov/22128142" }, { "database": "PubMed", "id": "22614008", "url": "https://pubmed.ncbi.nlm.nih.gov/22614008" }, { "database": "PubMed", "id": "22919583", "url": "https://pubmed.ncbi.nlm.nih.gov/22919583" }, { "database": "PubMed", "id": "22974528", "url": "https://pubmed.ncbi.nlm.nih.gov/22974528" }, { "database": "PubMed", "id": "23027128", "url": "https://pubmed.ncbi.nlm.nih.gov/23027128" }, { "database": "PubMed", "id": "23028449", "url": "https://pubmed.ncbi.nlm.nih.gov/23028449" }, { "database": "PubMed", "id": "24108461", "url": "https://pubmed.ncbi.nlm.nih.gov/24108461" }, { "database": "PubMed", "id": "24169345", "url": "https://pubmed.ncbi.nlm.nih.gov/24169345" }, { "database": "PubMed", "id": "24416452", "url": "https://pubmed.ncbi.nlm.nih.gov/24416452" }, { "database": "PubMed", "id": "25063025", "url": "https://pubmed.ncbi.nlm.nih.gov/25063025" }, { "database": "PubMed", "id": "25319025", "url": "https://pubmed.ncbi.nlm.nih.gov/25319025" }, { "database": "PubMed", "id": "25938342", "url": "https://pubmed.ncbi.nlm.nih.gov/25938342" }, { "database": "PubMed", "id": "26378057", "url": "https://pubmed.ncbi.nlm.nih.gov/26378057" }, { "database": "PubMed", "id": "27176481", "url": "https://pubmed.ncbi.nlm.nih.gov/27176481" }, { "database": "PubMed", "id": "27708220", "url": "https://pubmed.ncbi.nlm.nih.gov/27708220" }, { "database": "PubMed", "id": "28255537", "url": "https://pubmed.ncbi.nlm.nih.gov/28255537" }, { "database": "PubMed", "id": "28416479", "url": "https://pubmed.ncbi.nlm.nih.gov/28416479" }, { "database": "PubMed", "id": "28424421", "url": "https://pubmed.ncbi.nlm.nih.gov/28424421" }, { "database": "PubMed", "id": "28444899", "url": "https://pubmed.ncbi.nlm.nih.gov/28444899" }, { "database": "PubMed", "id": "28915654", "url": "https://pubmed.ncbi.nlm.nih.gov/28915654" }, { "database": "PubMed", "id": "29209901", "url": "https://pubmed.ncbi.nlm.nih.gov/29209901" }, { "database": "PubMed", "id": "29420611", "url": "https://pubmed.ncbi.nlm.nih.gov/29420611" }, { "database": "PubMed", "id": "32655375", "url": "https://pubmed.ncbi.nlm.nih.gov/32655375" }, { "database": "PubMed", "id": "35325397", "url": "https://pubmed.ncbi.nlm.nih.gov/35325397" }, { "database": "PubMed", "id": "9032297", "url": "https://pubmed.ncbi.nlm.nih.gov/9032297" }, { "database": "PubMed", "id": "18034455", "url": "https://pubmed.ncbi.nlm.nih.gov/18034455" } ], "site_lbl": "Tyr925", "uniprot_canonical_ac": "P34152-3" }, { "start_pos": 925, "end_pos": 925, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05397" }, { "database": "PubMed", "id": "7997267", "url": "https://pubmed.ncbi.nlm.nih.gov/7997267" }, { "database": "PubMed", "id": "8816475", "url": "https://pubmed.ncbi.nlm.nih.gov/8816475" } ], "site_lbl": "Tyr925", "uniprot_canonical_ac": "Q05397-1" }, { "start_pos": 925, "end_pos": 925, "kinase_uniprot_canonical_ac": "Q05397-1", "kinase_gene_name": "PTK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05397" }, { "database": "PubMed", "id": "7997267", "url": "https://pubmed.ncbi.nlm.nih.gov/7997267" }, { "database": "PubMed", "id": "8816475", "url": "https://pubmed.ncbi.nlm.nih.gov/8816475" } ], "site_lbl": "Tyr925", "uniprot_canonical_ac": "Q05397-1" } ], "record_id": "pubmed.7997267", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Direct binding of C-terminal region of p130Cas to SH2 and SH3 domains of Src kinase.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Nakamoto T, Sakai R, Ozawa K, Yazaki Y, Hirai H", "reference": { "type": "PubMed", "id": "8621540", "url": "https://pubmed.ncbi.nlm.nih.gov/8621540" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46108-1", "protein_name": "Adapter molecule crk", "gene_name": "CRK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8621540", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Outside-in integrin signal transduction. Alpha IIb beta 3-(GP IIb IIIa) tyrosine phosphorylation induced by platelet aggregation.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Law DA, Nannizzi-Alaimo L, Phillips DR", "reference": { "type": "PubMed", "id": "8631894", "url": "https://pubmed.ncbi.nlm.nih.gov/8631894" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43405-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LDG7-1", "protein_name": "RAS guanyl-releasing protein 2", "gene_name": "RASGRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WZA2-1", "protein_name": "Rap guanine nucleotide exchange factor 4", "gene_name": "RAPGEF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95398-1", "protein_name": "Rap guanine nucleotide exchange factor 3", "gene_name": "RAPGEF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18031-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 1", "gene_name": "PTPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95267-1", "protein_name": "RAS guanyl-releasing protein 1", "gene_name": "RASGRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 785, "end_pos": 785, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P05106", "url": "https://www.uniprot.org/uniprotkb/P05106" }, { "database": "PubMed", "id": "8631894", "url": "https://pubmed.ncbi.nlm.nih.gov/8631894" }, { "database": "IntAct", "id": "P05106", "url": "https://www.ebi.ac.uk/intact/interactors/id:P05106*" }, { "database": "iPTMnet", "id": "P05106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P05106" }, { "database": "PubMed", "id": "33436498", "url": "https://pubmed.ncbi.nlm.nih.gov/33436498" }, { "database": "PubMed", "id": "27145276", "url": "https://pubmed.ncbi.nlm.nih.gov/27145276" } ], "site_lbl": "Tyr785", "uniprot_canonical_ac": "P05106-1" } ], "record_id": "pubmed.8631894", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Introduction of p130cas signaling complex formation upon integrin-mediated cell adhesion: a role for Src family kinases.", "journal": "Molecular and cellular biology", "date": "1996", "authors": "Vuori K, Hirai H, Aizawa S, Ruoslahti E", "reference": { "type": "PubMed", "id": "8649368", "url": "https://pubmed.ncbi.nlm.nih.gov/8649368" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46108-1", "protein_name": "Adapter molecule crk", "gene_name": "CRK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8649368", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning, expression, and cellular localization of the oncogenic 58-kDa inhibitor of the RNA-activated human and mouse protein kinase.", "journal": "Gene", "date": "1996", "authors": "Korth MJ, Lyons CN, Wambach M, Katze MG", "reference": { "type": "PubMed", "id": "8666242", "url": "https://pubmed.ncbi.nlm.nih.gov/8666242" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14773-1", "protein_name": "Tripeptidyl-peptidase 1", "gene_name": "TPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14203-1", "protein_name": "Dynactin subunit 1", "gene_name": "DCTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "ARFGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C869-1", "protein_name": "Cytosolic phospholipase A2 beta", "gene_name": "PLA2G4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q27968-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9UBS3-1", "protein_name": "DnaJ homolog subfamily B member 9", "gene_name": "DNAJB9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14554-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS4-1", "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95070-1", "protein_name": "Protein YIF1A", "gene_name": "YIF1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14999-1", "protein_name": "Cullin-7", "gene_name": "CUL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91YW3-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "Dnajc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O14653-1", "protein_name": "Golgi SNAP receptor complex member 2", "gene_name": "GOSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWM8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP14", "gene_name": "FKBP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2G4-1", "protein_name": "Testis-specific Y-encoded-like protein 2", "gene_name": "TSPYL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14595-1", "protein_name": "Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2", "gene_name": "CTDSP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U4-1", "protein_name": "CXXC-type zinc finger protein 1", "gene_name": "CXXC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43731-1", "protein_name": "ER lumen protein-retaining receptor 3", "gene_name": "KDELR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DMM9-1", "protein_name": "Sulfotransferase 1A3", "gene_name": "SULT1A3; SULT1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06210-1", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "GFPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49840-1", "protein_name": "Glycogen synthase kinase-3 alpha", "gene_name": "GSK3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92611-1", "protein_name": "ER degradation-enhancing alpha-mannosidase-like protein 1", "gene_name": "EDEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13105-1", "protein_name": "Zinc finger and BTB domain-containing protein 17", "gene_name": "ZBTB17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU5-1", "protein_name": "Guanine nucleotide-exchange factor SEC12", "gene_name": "PREB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51858-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "HDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15084-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "PDIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93075-1", "protein_name": "3'-5' RNA nuclease TATDN2", "gene_name": "TATDN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X1-1", "protein_name": "Stress-associated endoplasmic reticulum protein 1", "gene_name": "SERP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5MNZ9-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 1", "gene_name": "WIPI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92935-1", "protein_name": "Exostosin-like 1", "gene_name": "EXTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76024-1", "protein_name": "Wolframin", "gene_name": "WFS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61421-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "ATP6V0D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49748-1", "protein_name": "Very long-chain acyl-CoA dehydrogenase, mitochondrial", "gene_name": "ACADVL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H8-1", "protein_name": "Myeloid-derived growth factor", "gene_name": "MYDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35611-1", "protein_name": "Alpha-adducin", "gene_name": "ADD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15173-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform", "gene_name": "PPP2R5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8666242", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 49 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Uridine nucleotide selectivity of three phospholipase C-activating P2 receptors: identification of a UDP-selective, a UTP-selective, and an ATP- and UTP-specific receptor.", "journal": "Molecular pharmacology", "date": "1996", "authors": "Nicholas RA, Watt WC, Lazarowski ER, Li Q, Harden K", "reference": { "type": "PubMed", "id": "8700127", "url": "https://pubmed.ncbi.nlm.nih.gov/8700127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15077-1", "protein_name": "P2Y purinoceptor 6", "gene_name": "P2RY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8700127", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 70 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Not all Shc's roads lead to Ras.", "journal": "Trends in biochemical sciences", "date": "1996", "authors": "Bonfini L, Migliaccio E, Pelicci G, Lanfrancone L, Pelicci PG", "reference": { "type": "PubMed", "id": "8755247", "url": "https://pubmed.ncbi.nlm.nih.gov/8755247" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43405-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LDG7-1", "protein_name": "RAS guanyl-releasing protein 2", "gene_name": "RASGRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WZA2-1", "protein_name": "Rap guanine nucleotide exchange factor 4", "gene_name": "RAPGEF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95398-1", "protein_name": "Rap guanine nucleotide exchange factor 3", "gene_name": "RAPGEF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18031-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 1", "gene_name": "PTPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95267-1", "protein_name": "RAS guanyl-releasing protein 1", "gene_name": "RASGRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8755247", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sildenafil: an orally active type 5 cyclic GMP-specific phosphodiesterase inhibitor for the treatment of penile erectile dysfunction.", "journal": "International journal of impotence research", "date": "1996", "authors": "Boolell M, Allen MJ, Ballard SA, Gepi-Attee S, Muirhead GJ, Naylor AM, Osterloh IH, Gingell C", "reference": { "type": "PubMed", "id": "8858389", "url": "https://pubmed.ncbi.nlm.nih.gov/8858389" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8858389", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polymorphism in the alpha 1 helix of the HLA-B heavy chain can have an overriding influence on peptide-binding specificity.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "1997-02-15", "authors": "Barber L D, Percival L, Arnett K L, Gumperz J E, Chen L, Parham P", "reference": { "type": "PubMed", "id": "9029102", "url": "https://pubmed.ncbi.nlm.nih.gov/9029102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11388-1", "protein_name": "DNA topoisomerase 2-alpha", "gene_name": "TOP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75293-1", "protein_name": "Growth arrest and DNA damage-inducible protein GADD45 beta", "gene_name": "GADD45B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16633-1", "protein_name": "POU domain class 2-associating factor 1", "gene_name": "POU2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15782-4", "protein_name": "Chitinase-3-like protein 2", "gene_name": "CHI3L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01082-1", "protein_name": "Spectrin beta chain, non-erythrocytic 1", "gene_name": "SPTBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35659-1", "protein_name": "Protein DEK", "gene_name": "DEK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20023-1", "protein_name": "Complement receptor type 2", "gene_name": "CR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43504-1", "protein_name": "Ragulator complex protein LAMTOR5", "gene_name": "LAMTOR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16763-1", "protein_name": "Ubiquitin-conjugating enzyme E2 S", "gene_name": "UBE2S", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45973-1", "protein_name": "Chromobox protein homolog 5", "gene_name": "CBX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13164-1", "protein_name": "Interferon-induced transmembrane protein 1", "gene_name": "IFITM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VIR3-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3B", "gene_name": "EIF2S3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53FV1-1", "protein_name": "ORM1-like protein 2", "gene_name": "ORMDL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15069-1", "protein_name": "NAC-alpha domain-containing protein 1", "gene_name": "NACAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28066-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PSMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01591-1", "protein_name": "Immunoglobulin J chain", "gene_name": "JCHAIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEY8-1", "protein_name": "Periphilin-1", "gene_name": "PPHLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33552-1", "protein_name": "Cyclin-dependent kinases regulatory subunit 2", "gene_name": "CKS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84090-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "ERH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63244-1", "protein_name": "Small ribosomal subunit protein RACK1", "gene_name": "RACK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9029102", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and localization of the gene for EXTL, a third member of the multiple exostoses gene family.", "journal": "Genome research", "date": "1997", "authors": "Wise CA, Clines GA, Massa H, Trask BJ, Lovett M", "reference": { "type": "PubMed", "id": "9037597", "url": "https://pubmed.ncbi.nlm.nih.gov/9037597" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14773-1", "protein_name": "Tripeptidyl-peptidase 1", "gene_name": "TPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14203-1", "protein_name": "Dynactin subunit 1", "gene_name": "DCTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "ARFGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C869-1", "protein_name": "Cytosolic phospholipase A2 beta", "gene_name": "PLA2G4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS3-1", "protein_name": "DnaJ homolog subfamily B member 9", "gene_name": "DNAJB9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14554-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS4-1", "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95070-1", "protein_name": "Protein YIF1A", "gene_name": "YIF1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14999-1", "protein_name": "Cullin-7", "gene_name": "CUL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14653-1", "protein_name": "Golgi SNAP receptor complex member 2", "gene_name": "GOSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWM8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP14", "gene_name": "FKBP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2G4-1", "protein_name": "Testis-specific Y-encoded-like protein 2", "gene_name": "TSPYL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14595-1", "protein_name": "Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2", "gene_name": "CTDSP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U4-1", "protein_name": "CXXC-type zinc finger protein 1", "gene_name": "CXXC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43731-1", "protein_name": "ER lumen protein-retaining receptor 3", "gene_name": "KDELR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DMM9-1", "protein_name": "Sulfotransferase 1A3", "gene_name": "SULT1A3; SULT1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06210-1", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "GFPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49840-1", "protein_name": "Glycogen synthase kinase-3 alpha", "gene_name": "GSK3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92611-1", "protein_name": "ER degradation-enhancing alpha-mannosidase-like protein 1", "gene_name": "EDEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13105-1", "protein_name": "Zinc finger and BTB domain-containing protein 17", "gene_name": "ZBTB17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU5-1", "protein_name": "Guanine nucleotide-exchange factor SEC12", "gene_name": "PREB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51858-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "HDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15084-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "PDIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93075-1", "protein_name": "3'-5' RNA nuclease TATDN2", "gene_name": "TATDN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X1-1", "protein_name": "Stress-associated endoplasmic reticulum protein 1", "gene_name": "SERP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5MNZ9-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 1", "gene_name": "WIPI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92935-1", "protein_name": "Exostosin-like 1", "gene_name": "EXTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76024-1", "protein_name": "Wolframin", "gene_name": "WFS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61421-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "ATP6V0D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49748-1", "protein_name": "Very long-chain acyl-CoA dehydrogenase, mitochondrial", "gene_name": "ACADVL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H8-1", "protein_name": "Myeloid-derived growth factor", "gene_name": "MYDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35611-1", "protein_name": "Alpha-adducin", "gene_name": "ADD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15173-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform", "gene_name": "PPP2R5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9037597", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of the pp72syk protein tyrosine kinase by platelet integrin alpha IIb beta 3.", "journal": "The EMBO journal", "date": "1997", "authors": "Gao J, Zoller KE, Ginsberg MH, Brugge JS, Shattil SJ", "reference": { "type": "PubMed", "id": "9351824", "url": "https://pubmed.ncbi.nlm.nih.gov/9351824" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43405-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LDG7-1", "protein_name": "RAS guanyl-releasing protein 2", "gene_name": "RASGRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WZA2-1", "protein_name": "Rap guanine nucleotide exchange factor 4", "gene_name": "RAPGEF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95398-1", "protein_name": "Rap guanine nucleotide exchange factor 3", "gene_name": "RAPGEF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18031-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 1", "gene_name": "PTPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41240-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "CSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95267-1", "protein_name": "RAS guanyl-releasing protein 1", "gene_name": "RASGRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9351824", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of a novel member of the EXT gene family, EXTL2.", "journal": "European journal of human genetics : EJHG", "date": "1997", "authors": "Wuyts W, Van Hul W, Hendrickx J, Speleman F, Wauters J, De Boulle K, Van Roy N, Van Agtmael T, Bossuyt P, Willems PJ", "reference": { "type": "PubMed", "id": "9450183", "url": "https://pubmed.ncbi.nlm.nih.gov/9450183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14773-1", "protein_name": "Tripeptidyl-peptidase 1", "gene_name": "TPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14203-1", "protein_name": "Dynactin subunit 1", "gene_name": "DCTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "ARFGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C869-1", "protein_name": "Cytosolic phospholipase A2 beta", "gene_name": "PLA2G4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS3-1", "protein_name": "DnaJ homolog subfamily B member 9", "gene_name": "DNAJB9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14554-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS4-1", "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95070-1", "protein_name": "Protein YIF1A", "gene_name": "YIF1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14999-1", "protein_name": "Cullin-7", "gene_name": "CUL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14653-1", "protein_name": "Golgi SNAP receptor complex member 2", "gene_name": "GOSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWM8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP14", "gene_name": "FKBP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2G4-1", "protein_name": "Testis-specific Y-encoded-like protein 2", "gene_name": "TSPYL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14595-1", "protein_name": "Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2", "gene_name": "CTDSP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U4-1", "protein_name": "CXXC-type zinc finger protein 1", "gene_name": "CXXC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43731-1", "protein_name": "ER lumen protein-retaining receptor 3", "gene_name": "KDELR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DMM9-1", "protein_name": "Sulfotransferase 1A3", "gene_name": "SULT1A3; SULT1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06210-1", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "GFPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49840-1", "protein_name": "Glycogen synthase kinase-3 alpha", "gene_name": "GSK3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92611-1", "protein_name": "ER degradation-enhancing alpha-mannosidase-like protein 1", "gene_name": "EDEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13105-1", "protein_name": "Zinc finger and BTB domain-containing protein 17", "gene_name": "ZBTB17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU5-1", "protein_name": "Guanine nucleotide-exchange factor SEC12", "gene_name": "PREB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51858-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "HDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15084-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "PDIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93075-1", "protein_name": "3'-5' RNA nuclease TATDN2", "gene_name": "TATDN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X1-1", "protein_name": "Stress-associated endoplasmic reticulum protein 1", "gene_name": "SERP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5MNZ9-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 1", "gene_name": "WIPI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92935-1", "protein_name": "Exostosin-like 1", "gene_name": "EXTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76024-1", "protein_name": "Wolframin", "gene_name": "WFS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61421-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "ATP6V0D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49748-1", "protein_name": "Very long-chain acyl-CoA dehydrogenase, mitochondrial", "gene_name": "ACADVL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H8-1", "protein_name": "Myeloid-derived growth factor", "gene_name": "MYDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35611-1", "protein_name": "Alpha-adducin", "gene_name": "ADD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15173-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform", "gene_name": "PPP2R5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9450183", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure, chromosomal location, and expression profile of EXTR1 and EXTR2, new members of the multiple exostoses gene family.", "journal": "Biochemical and biophysical research communications", "date": "1998", "authors": "Saito T, Seki N, Yamauchi M, Tsuji S, Hayashi A, Kozuma S, Hori T", "reference": { "type": "PubMed", "id": "9473480", "url": "https://pubmed.ncbi.nlm.nih.gov/9473480" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14773-1", "protein_name": "Tripeptidyl-peptidase 1", "gene_name": "TPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14203-1", "protein_name": "Dynactin subunit 1", "gene_name": "DCTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "ARFGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C869-1", "protein_name": "Cytosolic phospholipase A2 beta", "gene_name": "PLA2G4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS3-1", "protein_name": "DnaJ homolog subfamily B member 9", "gene_name": "DNAJB9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14554-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS4-1", "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95070-1", "protein_name": "Protein YIF1A", "gene_name": "YIF1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14999-1", "protein_name": "Cullin-7", "gene_name": "CUL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14653-1", "protein_name": "Golgi SNAP receptor complex member 2", "gene_name": "GOSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWM8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP14", "gene_name": "FKBP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2G4-1", "protein_name": "Testis-specific Y-encoded-like protein 2", "gene_name": "TSPYL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14595-1", "protein_name": "Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2", "gene_name": "CTDSP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U4-1", "protein_name": "CXXC-type zinc finger protein 1", "gene_name": "CXXC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43731-1", "protein_name": "ER lumen protein-retaining receptor 3", "gene_name": "KDELR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DMM9-1", "protein_name": "Sulfotransferase 1A3", "gene_name": "SULT1A3; SULT1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06210-1", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "GFPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49840-1", "protein_name": "Glycogen synthase kinase-3 alpha", "gene_name": "GSK3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92611-1", "protein_name": "ER degradation-enhancing alpha-mannosidase-like protein 1", "gene_name": "EDEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13105-1", "protein_name": "Zinc finger and BTB domain-containing protein 17", "gene_name": "ZBTB17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU5-1", "protein_name": "Guanine nucleotide-exchange factor SEC12", "gene_name": "PREB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51858-1", "protein_name": "Hepatoma-derived growth factor", "gene_name": "HDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15084-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "PDIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93075-1", "protein_name": "3'-5' RNA nuclease TATDN2", "gene_name": "TATDN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X1-1", "protein_name": "Stress-associated endoplasmic reticulum protein 1", "gene_name": "SERP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5MNZ9-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 1", "gene_name": "WIPI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92935-1", "protein_name": "Exostosin-like 1", "gene_name": "EXTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76024-1", "protein_name": "Wolframin", "gene_name": "WFS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61421-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "ATP6V0D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49748-1", "protein_name": "Very long-chain acyl-CoA dehydrogenase, mitochondrial", "gene_name": "ACADVL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H8-1", "protein_name": "Myeloid-derived growth factor", "gene_name": "MYDGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35611-1", "protein_name": "Alpha-adducin", "gene_name": "ADD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15173-1", "protein_name": "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform", "gene_name": "PPP2R5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9473480", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cardiovascular T-type calcium channels: physiological and pharmacological significance.", "journal": "Journal of hypertension. Supplement : official journal of the International Society of Hypertension", "date": "1997", "authors": "Triggle DJ", "reference": { "type": "PubMed", "id": "9481611", "url": "https://pubmed.ncbi.nlm.nih.gov/9481611" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9481611", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple Grb2-mediated integrin-stimulated signaling pathways to ERK2/mitogen-activated protein kinase: summation of both c-Src- and focal adhesion kinase-initiated tyrosine phosphorylation events.", "journal": "Molecular and cellular biology", "date": "1998", "authors": "Schlaepfer DD, Jones KC, Hunter T", "reference": { "type": "PubMed", "id": "9566877", "url": "https://pubmed.ncbi.nlm.nih.gov/9566877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05397-1", "protein_name": "Focal adhesion kinase 1", "gene_name": "PTK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07889-1", "protein_name": "Son of sevenless homolog 1", "gene_name": "SOS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29353-1", "protein_name": "SHC-transforming protein 1", "gene_name": "SHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12931-1", "protein_name": "Proto-oncogene tyrosine-protein kinase Src", "gene_name": "SRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5R6-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "Q05397-1", "kinase_gene_name": "PTK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29353", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29353" }, { "database": "PubMed", "id": "9566877", "url": "https://pubmed.ncbi.nlm.nih.gov/9566877" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P29353-1" }, { "start_pos": 349, "end_pos": 349, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P29353", "url": "https://www.uniprot.org/uniprotkb/P29353" }, { "database": "PubMed", "id": "8939605", "url": "https://pubmed.ncbi.nlm.nih.gov/8939605" }, { "database": "PubMed", "id": "9121430", "url": "https://pubmed.ncbi.nlm.nih.gov/9121430" }, { "database": "PubMed", "id": "9566877", "url": "https://pubmed.ncbi.nlm.nih.gov/9566877" }, { "database": "IntAct", "id": "P29353", "url": "https://www.ebi.ac.uk/intact/interactors/id:P29353*" }, { "database": "iPTMnet", "id": "P29353", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29353" }, { "database": "PubMed", "id": "9872323", "url": "https://pubmed.ncbi.nlm.nih.gov/9872323" }, { "database": "PRO", "id": "P29353", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P29353" }, { "database": "PubMed", "id": "28492659", "url": "https://pubmed.ncbi.nlm.nih.gov/28492659" } ], "site_lbl": "Tyr349", "uniprot_canonical_ac": "P29353-1" }, { "start_pos": 350, "end_pos": 350, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P29353", "url": "https://www.uniprot.org/uniprotkb/P29353" }, { "database": "PubMed", "id": "9566877", "url": "https://pubmed.ncbi.nlm.nih.gov/9566877" }, { "database": "PubMed", "id": "9121430", "url": "https://pubmed.ncbi.nlm.nih.gov/9121430" }, { "database": "PubMed", "id": "8939605", "url": "https://pubmed.ncbi.nlm.nih.gov/8939605" }, { "database": "PRO", "id": "P29353", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P29353" }, { "database": "iPTMnet", "id": "P29353", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29353" } ], "site_lbl": "Tyr350", "uniprot_canonical_ac": "P29353-1" }, { "start_pos": 427, "end_pos": 427, "kinase_uniprot_canonical_ac": "Q05397-1", "kinase_gene_name": "PTK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29353", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29353" }, { "database": "PubMed", "id": "9566877", "url": "https://pubmed.ncbi.nlm.nih.gov/9566877" } ], "site_lbl": "Tyr427", "uniprot_canonical_ac": "P29353-1" }, { "start_pos": 427, "end_pos": 427, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P29353", "url": "https://www.uniprot.org/uniprotkb/P29353" }, { "database": "PubMed", "id": "9121430", "url": "https://pubmed.ncbi.nlm.nih.gov/9121430" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "9566877", "url": "https://pubmed.ncbi.nlm.nih.gov/9566877" }, { "database": "IntAct", "id": "P29353", "url": "https://www.ebi.ac.uk/intact/interactors/id:P29353*" }, { "database": "iPTMnet", "id": "P29353", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29353" }, { "database": "PubMed", "id": "22057045", "url": "https://pubmed.ncbi.nlm.nih.gov/22057045" }, { "database": "PubMed", "id": "11827484", "url": "https://pubmed.ncbi.nlm.nih.gov/11827484" }, { "database": "PubMed", "id": "12213123", "url": "https://pubmed.ncbi.nlm.nih.gov/12213123" }, { "database": "PubMed", "id": "9254595", "url": "https://pubmed.ncbi.nlm.nih.gov/9254595" }, { "database": "PubMed", "id": "9083103", "url": "https://pubmed.ncbi.nlm.nih.gov/9083103" }, { "database": "PubMed", "id": "8084588", "url": "https://pubmed.ncbi.nlm.nih.gov/8084588" }, { "database": "PubMed", "id": "9175774", "url": "https://pubmed.ncbi.nlm.nih.gov/9175774" }, { "database": "PubMed", "id": "9872323", "url": "https://pubmed.ncbi.nlm.nih.gov/9872323" }, { "database": "PubMed", "id": "8940013", "url": "https://pubmed.ncbi.nlm.nih.gov/8940013" }, { "database": "PubMed", "id": "9973396", "url": "https://pubmed.ncbi.nlm.nih.gov/9973396" }, { "database": "PubMed", "id": "8995379", "url": "https://pubmed.ncbi.nlm.nih.gov/8995379" }, { "database": "PubMed", "id": "8663178", "url": "https://pubmed.ncbi.nlm.nih.gov/8663178" }, { "database": "PRO", "id": "P29353", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P29353" } ], "site_lbl": "Tyr427", "uniprot_canonical_ac": "P29353-1" } ], "record_id": "pubmed.9566877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effects of sildenafil on the relaxation of human corpus cavernosum tissue in vitro and on the activities of cyclic nucleotide phosphodiesterase isozymes.", "journal": "The Journal of urology", "date": "1998", "authors": "Ballard SA, Gingell CJ, Tang K, Turner LA, Price ME, Naylor AM", "reference": { "type": "PubMed", "id": "9598563", "url": "https://pubmed.ncbi.nlm.nih.gov/9598563" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9598563", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sildenafil, a novel inhibitor of phosphodiesterase type 5 in human corpus cavernosum smooth muscle cells.", "journal": "Life sciences", "date": "1998", "authors": "Moreland RB, Goldstein I, Traish A", "reference": { "type": "PubMed", "id": "9600334", "url": "https://pubmed.ncbi.nlm.nih.gov/9600334" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9600334", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAMPs regulate the transport and ligand specificity of the calcitonin-receptor-like receptor.", "journal": "Nature", "date": "1998", "authors": "McLatchie LM, Fraser NJ, Main MJ, Wise A, Brown J, Thompson N, Solari R, Lee MG, Foord SM", "reference": { "type": "PubMed", "id": "9620797", "url": "https://pubmed.ncbi.nlm.nih.gov/9620797" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10092-1", "protein_name": "Calcitonin gene-related peptide 2", "gene_name": "CALCB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30988-2", "protein_name": "Calcitonin receptor", "gene_name": "CALCR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H4-1", "protein_name": "Protein ADM2", "gene_name": "ADM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60896-1", "protein_name": "Receptor activity-modifying protein 3", "gene_name": "RAMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60894-1", "protein_name": "Receptor activity-modifying protein 1", "gene_name": "RAMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9620797", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 76 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "YC-1 potentiates nitric oxide- and carbon monoxide-induced cyclic GMP effects in human platelets.", "journal": "Molecular pharmacology", "date": "1998", "authors": "Friebe A, Mullershausen F, Smolenski A, Walter U, Schultz G, Koesling D", "reference": { "type": "PubMed", "id": "9855623", "url": "https://pubmed.ncbi.nlm.nih.gov/9855623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13153-1", "protein_name": "Serine/threonine-protein kinase PAK 1", "gene_name": "PAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08133-1", "protein_name": "Annexin A6", "gene_name": "ANXA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04083-1", "protein_name": "Annexin A1", "gene_name": "ANXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13177-1", "protein_name": "Serine/threonine-protein kinase PAK 2", "gene_name": "PAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56539-1", "protein_name": "Caveolin-3", "gene_name": "CAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0X4-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1I", "gene_name": "CACNA1I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05682-1", "protein_name": "Caldesmon", "gene_name": "CALD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06753-1", "protein_name": "Tropomyosin alpha-3 chain", "gene_name": "TPM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09493-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A32-1", "protein_name": "Myosin regulatory light chain 11", "gene_name": "MYL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX66-1", "protein_name": "Sorbin and SH3 domain-containing protein 1", "gene_name": "SORBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14950-1", "protein_name": "Myosin regulatory light chain 12B", "gene_name": "MYL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07355-1", "protein_name": "Annexin A2", "gene_name": "ANXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75923-1", "protein_name": "Dysferlin", "gene_name": "DYSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05091-1", "protein_name": "Aldehyde dehydrogenase, mitochondrial", "gene_name": "ALDH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60504-1", "protein_name": "Vinexin", "gene_name": "SORBS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43497-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "gene_name": "CACNA1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14649-1", "protein_name": "Myosin light chain 6B", "gene_name": "MYL6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01449-1", "protein_name": "Myosin regulatory light chain 2, atrial isoform", "gene_name": "MYL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02045-1", "protein_name": "Myosin light chain 5", "gene_name": "MYL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19105-1", "protein_name": "Myosin regulatory light chain 12A", "gene_name": "MYL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24844-1", "protein_name": "Myosin regulatory light polypeptide 9", "gene_name": "MYL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUA6-1", "protein_name": "Myosin regulatory light chain 10", "gene_name": "MYL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15746-1", "protein_name": "Myosin light chain kinase, smooth muscle", "gene_name": "MYLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMU5-1", "protein_name": "Tripartite motif-containing protein 72", "gene_name": "TRIM72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67936-1", "protein_name": "Tropomyosin alpha-4 chain", "gene_name": "TPM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75343-1", "protein_name": "Guanylate cyclase soluble subunit beta-2", "gene_name": "GUCY1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33402-1", "protein_name": "Guanylate cyclase soluble subunit alpha-2", "gene_name": "GUCY1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02108-1", "protein_name": "Guanylate cyclase soluble subunit alpha-1", "gene_name": "GUCY1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02153-1", "protein_name": "Guanylate cyclase soluble subunit beta-1", "gene_name": "GUCY1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76074-1", "protein_name": "cGMP-specific 3',5'-cyclic phosphodiesterase", "gene_name": "PDE5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29536-1", "protein_name": "Leiomodin-1", "gene_name": "LMOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35749-1", "protein_name": "Myosin-11", "gene_name": "MYH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07951-1", "protein_name": "Tropomyosin beta chain", "gene_name": "TPM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y490", "url": "https://www.uniprot.org/uniprotkb/Q9Y490" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9855623", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of human gastric lipase and model of lysosomal acid lipase, two lipolytic enzymes of medical interest.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Roussel A, Canaan S, Egloff MP, Riviere M, Dupuis L, Verger R, Cambillau C", "reference": { "type": "PubMed", "id": "10358049", "url": "https://pubmed.ncbi.nlm.nih.gov/10358049" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19835-1", "protein_name": "Bile salt-activated lipase", "gene_name": "CEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54315-1", "protein_name": "Inactive pancreatic lipase-related protein 1", "gene_name": "PNLIPRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07098-1", "protein_name": "Gastric triacylglycerol lipase", "gene_name": "LIPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RR3-1", "protein_name": "Pancreatic lipase-related protein 3", "gene_name": "PNLIPRP3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 271, "start_aa": "Asn", "end_pos": 271, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn271", "evidence": [ { "id": "P07098", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07098#ptm_processing" }, { "id": "10358049", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10358049" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07098-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1HLG&bu=0&command=select+.B:308;+center+selection;+zoom+selection" }, "start_pos": 327, "start_aa": "Asn", "end_pos": 327, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn327", "evidence": [ { "id": "P07098", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07098#ptm_processing" }, { "id": "10358049", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10358049" }, { "id": "1HLG", "database": "PDB", "url": "https://www.rcsb.org/structure/1HLG" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P07098-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1HLG&bu=0&command=select+.B:15;+center+selection;+zoom+selection" }, "start_pos": 34, "start_aa": "Asn", "end_pos": 34, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn34", "evidence": [ { "id": "P07098", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07098#ptm_processing" }, { "id": "10358049", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10358049" }, { "id": "1HLG", "database": "PDB", "url": "https://www.rcsb.org/structure/1HLG" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P07098-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1HLG&bu=0&command=select+.B:80;+center+selection;+zoom+selection" }, "start_pos": 99, "start_aa": "Asn", "end_pos": 99, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn99", "evidence": [ { "id": "P07098", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07098#ptm_processing" }, { "id": "10358049", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10358049" }, { "id": "1HLG", "database": "PDB", "url": "https://www.rcsb.org/structure/1HLG" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07098-1" } ], "record_id": "pubmed.10358049", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 4 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_n_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 4 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_n_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discoordinate expression of pancreatic lipase and two related proteins in the human fetal pancreas.", "journal": "Pediatr. Res.", "date": "2000", "authors": "Yang Y, Sanchez D, Figarella C, Lowe M E", "reference": { "type": "PubMed", "id": "10674344", "url": "https://pubmed.ncbi.nlm.nih.gov/10674344" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10674344", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The specific activities of human digestive lipases measured from the in vivo and in vitro lipolysis of test meals.", "journal": "Gastroenterology", "date": "2000", "authors": "Carriere F, Renou C, Lopez V, De Caro J, Ferrato F, Lengsfeld H, De Caro A, Laugier R, Verger R", "reference": { "type": "PubMed", "id": "11040182", "url": "https://pubmed.ncbi.nlm.nih.gov/11040182" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19835-1", "protein_name": "Bile salt-activated lipase", "gene_name": "CEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54315-1", "protein_name": "Inactive pancreatic lipase-related protein 1", "gene_name": "PNLIPRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07098-1", "protein_name": "Gastric triacylglycerol lipase", "gene_name": "LIPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RR3-1", "protein_name": "Pancreatic lipase-related protein 3", "gene_name": "PNLIPRP3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11040182", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two novel human pancreatic lipase related proteins, hPLRP1 and hPLRP2. Differences in colipase dependence and in lipase activity.", "journal": "J. Biol. Chem.", "date": "1992", "authors": "Giller T, Buchwald P, Blum-Kaelin D, Hunziker W", "reference": { "type": "PubMed", "id": "1379598", "url": "https://pubmed.ncbi.nlm.nih.gov/1379598" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19835-1", "protein_name": "Bile salt-activated lipase", "gene_name": "CEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54315-1", "protein_name": "Inactive pancreatic lipase-related protein 1", "gene_name": "PNLIPRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07098-1", "protein_name": "Gastric triacylglycerol lipase", "gene_name": "LIPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RR3-1", "protein_name": "Pancreatic lipase-related protein 3", "gene_name": "PNLIPRP3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1379598", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human pancreatic lipase-related protein 2 is a galactolipase.", "journal": "Biochemistry", "date": "2004", "authors": "Sias B, Ferrato F, Grandval P, Lafont D, Boullanger P, De Caro A, Leboeuf B, Verger R, Carriere F", "reference": { "type": "PubMed", "id": "15287741", "url": "https://pubmed.ncbi.nlm.nih.gov/15287741" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15287741", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.", "journal": "American journal of human genetics", "date": "2006", "authors": "Grupe A, Li Y, Rowland C, Nowotny P, Hinrichs AL, Smemo S, Kauwe JS, Maxwell TJ, Cherny S, Doil L, Tacey K, van Luchene R, Myers A, Wavrant-De Vrieze F, Kaleem M, Hollingworth P, Jehu L, Foy C, Archer N, Hamilton G, Holmans P, Morris CM, Catanese J, Sninsky J, White TJ, Powell J, Hardy J, O'Donovan M, Lovestone S, Jones L, Morris JC, Thal L, Owen M, Williams J, Goate A", "reference": { "type": "PubMed", "id": "16385451", "url": "https://pubmed.ncbi.nlm.nih.gov/16385451" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P4A7-1", "protein_name": "Sideroflexin-4", "gene_name": "SFXN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS39-1", "protein_name": "Inactive double-stranded RNA-specific editase B2", "gene_name": "ADARB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB2-1", "protein_name": "Sideroflexin-2", "gene_name": "SFXN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQW1-1", "protein_name": "Protein transport protein Sec31B", "gene_name": "SEC31B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD45-1", "protein_name": "Transmembrane 9 superfamily member 3", "gene_name": "TM9SF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYQ7-1", "protein_name": "Threonine synthase-like 1", "gene_name": "THNSL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDW4-1", "protein_name": "Zinc finger protein 248", "gene_name": "ZNF248", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XD8-1", "protein_name": "AN1-type zinc finger protein 4", "gene_name": "ZFAND4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2G6-1", "protein_name": "Zinc finger CCHC domain-containing protein 24", "gene_name": "ZCCHC24", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2H3-1", "protein_name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "gene_name": "PYROXD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYY1-1", "protein_name": "Ankyrin repeat domain-containing protein 22", "gene_name": "ANKRD22", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86SE9-1", "protein_name": "Polycomb group RING finger protein 5", "gene_name": "PCGF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBK9-1", "protein_name": "Arsenite methyltransferase", "gene_name": "AS3MT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N9N2-1", "protein_name": "Activating signal cointegrator 1 complex subunit 1", "gene_name": "ASCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94844-1", "protein_name": "Rho-related BTB domain-containing protein 1", "gene_name": "RHOBTB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PL2-1", "protein_name": "Beta-tectorin", "gene_name": "TECTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FJ0-1", "protein_name": "AMSH-like protease", "gene_name": "STAMBPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95992-1", "protein_name": "Cholesterol 25-hydroxylase", "gene_name": "CH25H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T2E6-1", "protein_name": "Armadillo-like helical domain-containing protein 3", "gene_name": "ARMH3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NCR9-1", "protein_name": "Clarin-3", "gene_name": "CLRN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTK1-1", "protein_name": "Protein DEPP1", "gene_name": "DEPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D05-1", "protein_name": "Protein FAM241B", "gene_name": "FAM241B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T848-1", "protein_name": "Metabotropic glycine receptor", "gene_name": "GPR158", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VZ66-1", "protein_name": "Janus kinase and microtubule-interacting protein 3", "gene_name": "JAKMIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XJ0-1", "protein_name": "Calcium homeostasis modulator protein 3", "gene_name": "CALHM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X67-1", "protein_name": "NAD(P)H pyrophosphatase NUDT13, mitochondrial", "gene_name": "NUDT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYW2-1", "protein_name": "Cilia- and flagella-associated protein 46", "gene_name": "CFAP46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T76-1", "protein_name": "MMS19 nucleotide excision repair protein homolog", "gene_name": "MMS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14CB8-1", "protein_name": "Rho GTPase-activating protein 19", "gene_name": "ARHGAP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV23-1", "protein_name": "S-acyl fatty acid synthase thioesterase, medium chain", "gene_name": "OLAH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYX0-1", "protein_name": "Renalase", "gene_name": "RNLS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LT4-1", "protein_name": "Sphingomyelin synthase-related protein 1", "gene_name": "SAMD8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S3-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWL1-1", "protein_name": "Pulmonary surfactant-associated protein A2", "gene_name": "SFTPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2H2-1", "protein_name": "Phosphatidylinositide 4-phosphatase SAC2", "gene_name": "INPP5F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q504Y0-1", "protein_name": "Zinc transporter ZIP12", "gene_name": "SLC39A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC4-1", "protein_name": "Rhotekin-2", "gene_name": "RTKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY21-1", "protein_name": "VPS10 domain-containing receptor SorCS1", "gene_name": "SORCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXA3-2", "protein_name": "RUN and FYVE domain-containing protein 2", "gene_name": "RUFY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR31-1", "protein_name": "Small COPII coat GTPase SAR1A", "gene_name": "SAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX21-1", "protein_name": "SMC5-SMC6 complex localization factor protein 2", "gene_name": "SLF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H694-1", "protein_name": "Protein bicaudal C homolog 1", "gene_name": "BICC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZUJ8-1", "protein_name": "Phosphoinositide 3-kinase adapter protein 1", "gene_name": "PIK3AP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7W2-4", "protein_name": "BEN domain-containing protein 7", "gene_name": "BEND7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND76-1", "protein_name": "Cyclin-Y", "gene_name": "CCNY", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKB3-1", "protein_name": "DnaJ homolog subfamily C member 12", "gene_name": "DNAJC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTE3-1", "protein_name": "Mini-chromosome maintenance complex-binding protein", "gene_name": "MCMBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DHV5-5", "protein_name": "Protein CC2D2B", "gene_name": "CC2D2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95260-1", "protein_name": "Arginyl-tRNA--protein transferase 1", "gene_name": "ATE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV63-1", "protein_name": "Attractin-like protein 1", "gene_name": "ATRNL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5W041-2", "protein_name": "Armadillo repeat-containing protein 3", "gene_name": "ARMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KC2-1", "protein_name": "ADP-ribosylation factor-like protein 5B", "gene_name": "ARL5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q69YN2-1", "protein_name": "CWF19-like protein 1", "gene_name": "CWF19L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H7U1-1", "protein_name": "Serine-rich coiled-coil domain-containing protein 2", "gene_name": "CCSER2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA72-1", "protein_name": "Calcium homeostasis modulator protein 2", "gene_name": "CALHM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30039-1", "protein_name": "Phenazine biosynthesis-like domain-containing protein", "gene_name": "PBLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70Z53-1", "protein_name": "Protein FRA10AC1", "gene_name": "FRA10AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDM7-1", "protein_name": "Cilia- and flagella-associated protein 43", "gene_name": "CFAP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBF2-1", "protein_name": "NHL repeat-containing protein 2", "gene_name": "NHLRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96M83-1", "protein_name": "Coiled-coil domain-containing protein 7", "gene_name": "CCDC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NE35-1", "protein_name": "Cytoplasmic polyadenylation element-binding protein 3", "gene_name": "CPEB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H008-1", "protein_name": "Phospholysine phosphohistidine inorganic pyrophosphate phosphatase", "gene_name": "LHPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2I8-1", "protein_name": "Leucine-rich melanocyte differentiation-associated protein", "gene_name": "LRMDA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2L5-1", "protein_name": "Ras association domain-containing protein 4", "gene_name": "RASSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A46-1", "protein_name": "Mitoferrin-2", "gene_name": "SLC25A28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTY1-1", "protein_name": "Monocarboxylate transporter 9", "gene_name": "SLC16A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4VC12-1", "protein_name": "Putative protein MSS51 homolog, mitochondrial", "gene_name": "MSS51", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZQ6-1", "protein_name": "Neuropeptide FF receptor 1", "gene_name": "NPFFR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VWI1-1", "protein_name": "Transcription elongation regulator 1-like protein", "gene_name": "TCERG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H987-1", "protein_name": "Synaptopodin 2-like protein", "gene_name": "SYNPO2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BU40-6", "protein_name": "Chordin-like protein 1", "gene_name": "CHRDL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N436-1", "protein_name": "Inactive carboxypeptidase-like protein X2", "gene_name": "CPXM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE4-1", "protein_name": "GTP-binding protein 4", "gene_name": "GTPBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FC7-1", "protein_name": "Phytanoyl-CoA hydroxylase-interacting protein-like", "gene_name": "PHYHIPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2V4-1", "protein_name": "Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1", "gene_name": "LRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWH5-1", "protein_name": "Pseudouridylate synthase TRUB1", "gene_name": "TRUB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EK5-1", "protein_name": "KIF-binding protein", "gene_name": "KIFBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95905-1", "protein_name": "Protein ecdysoneless homolog", "gene_name": "ECD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H668-1", "protein_name": "CST complex subunit STN1", "gene_name": "STN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P461-1", "protein_name": "Acyl-coenzyme A synthetase ACSM6, mitochondrial", "gene_name": "ACSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53EZ4-1", "protein_name": "Centrosomal protein of 55 kDa", "gene_name": "CEP55", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N4X5-1", "protein_name": "Actin filament-associated protein 1-like 2", "gene_name": "AFAP1L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H467-1", "protein_name": "CUE domain-containing protein 2", "gene_name": "CUEDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0MZ66-1", "protein_name": "Shootin-1", "gene_name": "SHTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBM7-1", "protein_name": "Transmembrane protein 254", "gene_name": "TMEM254", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFZ0-1", "protein_name": "F-box DNA helicase 1", "gene_name": "FBH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTN9-1", "protein_name": "Semaphorin-4G", "gene_name": "SEMA4G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16260-1", "protein_name": "Mitochondrial coenzyme A transporter SLC25A16", "gene_name": "SLC25A16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N983-1", "protein_name": "Large ribosomal subunit protein mL43", "gene_name": "MRPL43", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55107-1", "protein_name": "Growth/differentiation factor 10", "gene_name": "GDF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3K2-1", "protein_name": "Growth hormone-inducible transmembrane protein", "gene_name": "GHITM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5GFL6-1", "protein_name": "von Willebrand factor A domain-containing protein 2", "gene_name": "VWA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969W1-1", "protein_name": "Palmitoyltransferase ZDHHC16", "gene_name": "ZDHHC16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4V0-1", "protein_name": "Zinc finger protein 438", "gene_name": "ZNF438", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBU5-1", "protein_name": "Outer mitochondrial transmembrane helix translocase", "gene_name": "ATAD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UII6-1", "protein_name": "Dual specificity protein phosphatase 13B", "gene_name": "DUSP13B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVV4-1", "protein_name": "Poly(A) RNA polymerase, mitochondrial", "gene_name": "MTPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYX4-1", "protein_name": "Neuron-specific vesicular protein calcyon", "gene_name": "CALY", "tax_name": "Human" }, { "uniprot_canonical_ac": "B0YJ81-1", "protein_name": "Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1", "gene_name": "HACD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0VDF9-1", "protein_name": "Heat shock 70 kDa protein 14", "gene_name": "HSPA14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49903-1", "protein_name": "Zincore component SEPHS1", "gene_name": "SEPHS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5GLZ8-1", "protein_name": "Probable E3 ubiquitin-protein ligase HERC4", "gene_name": "HERC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5R9-1", "protein_name": "Probable E3 ubiquitin-protein ligase HECTD2", "gene_name": "HECTD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86YV9-1", "protein_name": "BLOC-2 complex member HPS6", "gene_name": "HPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UX2-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H5", "gene_name": "ITIH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13325-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 5", "gene_name": "IFIT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IW00-1", "protein_name": "V-set and transmembrane domain-containing protein 4", "gene_name": "VSTM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14981-1", "protein_name": "TATA-binding protein-associated factor 172", "gene_name": "BTAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T686-1", "protein_name": "Arginine vasopressin-induced protein 1", "gene_name": "AVPI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XK3-1", "protein_name": "Swi5-dependent recombination DNA repair protein 1 homolog", "gene_name": "SFR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5L2-1", "protein_name": "Coiled-coil domain-containing protein R3HCC1L", "gene_name": "R3HCC1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75794-1", "protein_name": "Translation initiation factor eIF2 assembly protein", "gene_name": "CDC123", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86VU5-1", "protein_name": "Catechol O-methyltransferase domain-containing protein 1", "gene_name": "COMTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ45-1", "protein_name": "CDGSH iron-sulfur domain-containing protein 1", "gene_name": "CISD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX94-1", "protein_name": "WW domain binding protein 1-like", "gene_name": "WBP1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "A2VDF0-1", "protein_name": "Fucose mutarotase", "gene_name": "FUOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W3-1", "protein_name": "Protein FAM204A", "gene_name": "FAM204A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H098-1", "protein_name": "Protein FAM107B", "gene_name": "FAM107B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCA0-1", "protein_name": "Leucine-rich repeat-containing protein 20", "gene_name": "LRRC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T0T0-1", "protein_name": "E3 ubiquitin-protein ligase MARCHF8", "gene_name": "MARCHF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFU7-1", "protein_name": "Methylcytosine dioxygenase TET1", "gene_name": "TET1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JPI9-2", "protein_name": "EEF1A lysine methyltransferase 2", "gene_name": "EEF1AKMT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZS81-1", "protein_name": "WD repeat- and FYVE domain-containing protein 4", "gene_name": "WDFY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NCK3-1", "protein_name": "Zinc finger protein 485", "gene_name": "ZNF485", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16385451", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 129 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Further biochemical characterization of human pancreatic lipase-related protein 2 expressed in yeast cells.", "journal": "Journal of lipid research", "date": "2007-07", "authors": "Eydoux C\u00e9cilia, De Caro Josiane, Ferrato Francine, Boullanger Paul, Lafont Dominique, Laugier Ren\u00e9, Carri\u00e8re Fr\u00e9d\u00e9ric, De Caro Alain", "reference": { "type": "PubMed", "id": "17401110", "url": "https://pubmed.ncbi.nlm.nih.gov/17401110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17401110", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of human pancreatic lipase-related protein 2 with the lid in an open conformation.", "journal": "Biochemistry", "date": "2008", "authors": "Eydoux C, Spinelli S, Davis TL, Walker JR, Seitova A, Dhe-Paganon S, De Caro A, Cambillau C, Carriere F", "reference": { "type": "PubMed", "id": "18702514", "url": "https://pubmed.ncbi.nlm.nih.gov/18702514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 353, "start_aa": "Asn", "end_pos": 353, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn353", "evidence": [ { "id": "P54317", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P54317#ptm_processing" }, { "id": "18702514", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18702514" }, { "id": "2OXE", "database": "PDB", "url": "https://www.rcsb.org/sequence/2OXE" } ], "filter_code": "001000000000000000000.00010000000000.00.01100", "uniprot_canonical_ac": "P54317-1" } ], "mutagenesis": [ { "start_pos": 353, "end_pos": 353, "sequence_org": "N", "sequence_mut": "Q", "comment": "Loss of N-glycosylation.", "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" }, { "database": "PubMed", "id": "18702514", "url": "https://pubmed.ncbi.nlm.nih.gov/18702514" } ], "uniprot_canonical_ac": "P54317-1" } ], "record_id": "pubmed.18702514", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pancreatic lipase-related protein 2 (PLRP2) induction by IL-4 in cytotoxic T lymphocytes (CTLs) and reevaluation of the negative effects of its gene ablation on cytotoxicity.", "journal": "Journal of leukocyte biology", "date": "2009", "authors": "Alves BN, Leong J, Tamang DL, Elliott V, Edelnant J, Redelman D, Singer CA, Kuhn AR, Miller R, Lowe ME, Hudig D", "reference": { "type": "PubMed", "id": "19451396", "url": "https://pubmed.ncbi.nlm.nih.gov/19451396" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17892-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "Pnliprp2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19451396", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Individual and combined action of pancreatic lipase and pancreatic lipase-related proteins 1 and 2 on native versus homogenized milk fat globules.", "journal": "Molecular nutrition & food research", "date": "2009", "authors": "Berton A, Sebban-Kreuzer C, Rouvellac S, Lopez C, Crenon I", "reference": { "type": "PubMed", "id": "19824014", "url": "https://pubmed.ncbi.nlm.nih.gov/19824014" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54315-1", "protein_name": "Inactive pancreatic lipase-related protein 1", "gene_name": "PNLIPRP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19824014", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lipolysis of natural long chain and synthetic medium chain galactolipids by pancreatic lipase-related protein 2.", "journal": "Biochimica et biophysica acta", "date": "2010-04", "authors": "Amara Sawsan, Barouh Nathalie, Lecomte J\u00e9r\u00f4me, Lafont Dominique, Robert Sylvie, Villeneuve Pierre, De Caro Alain, Carri\u00e8re Fr\u00e9d\u00e9ric", "reference": { "type": "PubMed", "id": "20083229", "url": "https://pubmed.ncbi.nlm.nih.gov/20083229" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20083229", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Colloquium paper: human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010", "authors": "Hancock AM, Witonsky DB, Ehler E, Alkorta-Aranburu G, Beall C, Gebremedhin A, Sukernik R, Utermann G, Pritchard J, Coop G, Di Rienzo A", "reference": { "type": "PubMed", "id": "20445095", "url": "https://pubmed.ncbi.nlm.nih.gov/20445095" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20445095", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pancreatic lipase-related protein-2 (PLRP2) can contribute to dietary fat digestion in human newborns.", "journal": "The Journal of biological chemistry", "date": "2011", "authors": "Xiao X, Mukherjee A, Ross LE, Lowe ME", "reference": { "type": "PubMed", "id": "21652702", "url": "https://pubmed.ncbi.nlm.nih.gov/21652702" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21652702", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BSSL and PLRP2: key enzymes for lipid digestion in the newborn examined using the Caco-2 cell line.", "journal": "Journal of lipid research", "date": "2011-11", "authors": "Andersson Eva-Lotta, Hernell Olle, Bl\u00e4ckberg Lars, F\u00e4lt Helen, Lindquist Susanne", "reference": { "type": "PubMed", "id": "21865348", "url": "https://pubmed.ncbi.nlm.nih.gov/21865348" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21865348", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The complete digestion of human milk triacylglycerol in vitro requires gastric lipase, pancreatic colipase-dependent lipase, and bile salt-stimulated lipase.", "journal": "The Journal of clinical investigation", "date": "1990", "authors": "Bernback S, Blackberg L, Hernell O", "reference": { "type": "PubMed", "id": "2318975", "url": "https://pubmed.ncbi.nlm.nih.gov/2318975" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19835-1", "protein_name": "Bile salt-activated lipase", "gene_name": "CEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54315-1", "protein_name": "Inactive pancreatic lipase-related protein 1", "gene_name": "PNLIPRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07098-1", "protein_name": "Gastric triacylglycerol lipase", "gene_name": "LIPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RR3-1", "protein_name": "Pancreatic lipase-related protein 3", "gene_name": "PNLIPRP3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2318975", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pancreatic lipase-related protein 2 digests fats in human milk and formula in concert with gastric lipase and carboxyl ester lipase.", "journal": "Pediatric research", "date": "2013", "authors": "Johnson K, Ross L, Miller R, Xiao X, Lowe ME", "reference": { "type": "PubMed", "id": "23732775", "url": "https://pubmed.ncbi.nlm.nih.gov/23732775" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23732775", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The beta5-Loop and Lid Domain Contribute to the Substrate Specificity of Pancreatic Lipase-related Protein 2 (PNLIPRP2).", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Xiao X, Lowe ME", "reference": { "type": "PubMed", "id": "26494624", "url": "https://pubmed.ncbi.nlm.nih.gov/26494624" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26494624", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lysosomal Lipases PLRP2 and LPLA2 Process Mycobacterial Multi-acylated Lipids and Generate T Cell Stimulatory Antigens.", "journal": "Cell chemical biology", "date": "2016", "authors": "Gilleron M, Lepore M, Layre E, Cala-De Paepe D, Mebarek N, Shayman JA, Canaan S, Mori L, Carriere F, Puzo G, De Libero G", "reference": { "type": "PubMed", "id": "27662254", "url": "https://pubmed.ncbi.nlm.nih.gov/27662254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27662254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The common truncation variant in pancreatic lipase related protein 2 (PNLIPRP2) is expressed poorly and does not alter risk for chronic pancreatitis.", "journal": "PloS one", "date": "2018", "authors": "Nemeth BC, Pesei ZG, Hegyi E, Szucs A, Szentesi A, Hegyi P, Lowe ME, Sahin-Toth M", "reference": { "type": "PubMed", "id": "30408063", "url": "https://pubmed.ncbi.nlm.nih.gov/30408063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P54317-1", "protein_name": "Pancreatic lipase-related protein 2", "gene_name": "PNLIPRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P54317", "url": "https://www.uniprot.org/uniprotkb/P54317" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30408063", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]