[ { "title": "Mechanism of microhomology-mediated end-joining promoted by human DNA polymerase theta.", "journal": "Nature structural & molecular biology", "date": "2015", "authors": "Kent T, Chandramouly G, McDevitt SM, Ozdemir AY, Pomerantz RT", "reference": { "type": "PubMed", "id": "25643323", "url": "https://pubmed.ncbi.nlm.nih.gov/25643323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49916-1", "protein_name": "DNA ligase 3", "gene_name": "LIG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60934-1", "protein_name": "Nibrin", "gene_name": "NBN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39748-1", "protein_name": "Flap endonuclease 1", "gene_name": "FEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18887-1", "protein_name": "DNA repair protein XRCC1", "gene_name": "XRCC1", "tax_name": 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"O75417-1", "protein_name": "DNA polymerase theta", "gene_name": "POLQ", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P49916", "url": "https://www.uniprot.org/uniprotkb/P49916" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25643323", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Homology and enzymatic requirements of microhomology-dependent alternative end joining.", "journal": "Cell death & disease", "date": "2015", "authors": "Sharma S, Javadekar SM, Pandey M, Srivastava M, Kumari R, Raghavan SC", "reference": { "type": "PubMed", "id": "25789972", "url": "https://pubmed.ncbi.nlm.nih.gov/25789972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49916-1", "protein_name": "DNA ligase 3", "gene_name": "LIG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60934-1", "protein_name": "Nibrin", "gene_name": "NBN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39748-1", "protein_name": "Flap endonuclease 1", "gene_name": "FEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18887-1", "protein_name": "DNA repair protein XRCC1", "gene_name": "XRCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49959-1", "protein_name": "Double-strand break repair protein MRE11", "gene_name": "MRE11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99708-1", "protein_name": "DNA endonuclease RBBP8", "gene_name": "RBBP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T7-1", "protein_name": "NAD-dependent protein deacylase sirtuin-6", "gene_name": "SIRT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43351-1", "protein_name": "DNA repair protein RAD52 homolog", "gene_name": "RAD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92878-1", "protein_name": "DNA repair protein RAD50", "gene_name": "RAD50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51587-1", "protein_name": "Breast cancer 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"Human" }, { "uniprot_canonical_ac": "P39748-1", "protein_name": "Flap endonuclease 1", "gene_name": "FEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18887-1", "protein_name": "DNA repair protein XRCC1", "gene_name": "XRCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49959-1", "protein_name": "Double-strand break repair protein MRE11", "gene_name": "MRE11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99708-1", "protein_name": "DNA endonuclease RBBP8", "gene_name": "RBBP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6T7-1", "protein_name": "NAD-dependent protein deacylase sirtuin-6", "gene_name": "SIRT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43351-1", "protein_name": "DNA repair protein RAD52 homolog", "gene_name": "RAD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92878-1", "protein_name": "DNA 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[] } ] }, { "title": "Rac GTPase activating protein 1 promotes gallbladder cancer via binding DNA ligase 3 to reduce apoptosis.", "journal": "International journal of biological sciences", "date": "2021", "authors": "Bian R, Dang W, Song X, Liu L, Jiang C, Yang Y, Li Y, Li L, Li X, Hu Y, Bao R, Liu Y", "reference": { "type": "PubMed", "id": "34239347", "url": "https://pubmed.ncbi.nlm.nih.gov/34239347" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49916-1", "protein_name": "DNA ligase 3", "gene_name": "LIG3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P49916", "url": "https://www.uniprot.org/uniprotkb/P49916" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34239347", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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R, Ames Amanda M, Admiraal Suzanne J, O'Brien Patrick J", "reference": { "type": "PubMed", "id": "36625284", "url": "https://pubmed.ncbi.nlm.nih.gov/36625284" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49916-1", "protein_name": "DNA ligase 3", "gene_name": "LIG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18858-1", "protein_name": "DNA ligase 1", "gene_name": "LIG1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P49916", "url": "https://www.uniprot.org/uniprotkb/P49916" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36625284", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", 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Biol.", "date": "1995", "authors": "Chen J, Tomkinson AE, Ramos W, Mackey ZB, Danehower S, Walter CA, Schultz RA, Besterman JM, Husain I", "reference": { "type": "PubMed", "id": "7565692", "url": "https://pubmed.ncbi.nlm.nih.gov/7565692" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49916-1", "protein_name": "DNA ligase 3", "gene_name": "LIG3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P49916", "url": "https://www.uniprot.org/uniprotkb/P49916" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7565692", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and expression of human cDNAs encoding a novel DNA ligase IV and DNA ligase III, an enzyme active in DNA repair and recombination.", "journal": "Mol. 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Shulin packages axonemal outer dynein arms for ciliary targeting.", "journal": "Science (New York, N.Y.)", "date": "2021-02-26", "authors": "Mali Girish R, Ali Ferdos Abid, Lau Clinton K, Begum Farida, Boulanger J\u00e9r\u00f4me, Howe Jonathan D, Chen Zhuo A, Rappsilber Juri, Skehel Mark, Carter Andrew P", "reference": { "type": "PubMed", "id": "33632841", "url": "https://pubmed.ncbi.nlm.nih.gov/33632841" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TEA3-1", "protein_name": "Dynein axonemal assembly factor 9", "gene_name": "DNAAF9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5TEA3", "url": "https://www.uniprot.org/uniprotkb/Q5TEA3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33632841", 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA Repair Network Analysis Reveals Shieldin as a Key Regulator of NHEJ and PARP Inhibitor Sensitivity.", "journal": "Cell", "date": "2018", "authors": "Gupta R, Somyajit K, Narita T, Maskey E, Stanlie A, Kremer M, Typas D, Lammers M, Mailand N, Nussenzweig A, Lukas J, Choudhary C", "reference": { "type": "PubMed", "id": "29656893", "url": "https://pubmed.ncbi.nlm.nih.gov/29656893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8IYI0-1", "protein_name": "Shieldin complex subunit 1", "gene_name": "SHLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V20-1", "protein_name": "Shieldin complex subunit 2", "gene_name": "SHLD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNX1-1", "protein_name": "Shieldin complex subunit 3", "gene_name": "SHLD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI95-1", "protein_name": "Mitotic spindle assembly checkpoint protein MAD2B", "gene_name": "MAD2L2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8IYI0", "url": "https://www.uniprot.org/uniprotkb/Q8IYI0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 6, "end_pos": 11, "sequence_org": "QVHIFW", "sequence_mut": "", "comment": "Fails to interact with SHLD3 or MAD2L2.", "evidence": [ { "database": "UniProtKB", "id": "Q86V20", "url": "https://www.uniprot.org/uniprotkb/Q86V20" }, { "database": "PubMed", "id": "29656893", "url": "https://pubmed.ncbi.nlm.nih.gov/29656893" } ], "uniprot_canonical_ac": "Q86V20-1" }, { "start_pos": 53, "end_pos": 58, "sequence_org": "PKRSPP", "sequence_mut": "AKRSPA", "comment": "Fails to interact with MAD2L2.", "evidence": [ { "database": "UniProtKB", "id": "Q6ZNX1", "url": "https://www.uniprot.org/uniprotkb/Q6ZNX1" }, { "database": "PubMed", "id": "29656893", "url": "https://pubmed.ncbi.nlm.nih.gov/29656893" } ], "uniprot_canonical_ac": "Q6ZNX1-1" } ], "record_id": "pubmed.29656893", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"authors": "Horvath R, Holinski-Feder E, Neeve VC, Pyle A, Griffin H, Ashok D, Foley C, Hudson G, Rautenstrauss B, Nurnberg G, Nurnberg P, Kortler J, Neitzel B, Bassmann I, Rahman T, Keavney B, Loughlin J, Hambleton S, Schoser B, Lochmuller H, Santibanez-Koref M, Chinnery PF", "reference": { "type": "PubMed", "id": "22508347", "url": "https://pubmed.ncbi.nlm.nih.gov/22508347" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NSK7-4", "protein_name": "Protein C19orf12", "gene_name": "C19orf12", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NSK7", "url": "https://www.uniprot.org/uniprotkb/Q9NSK7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22508347", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional characterization of rabbit and human L-gulonate 3-dehydrogenase.", "journal": "Journal of biochemistry", "date": "2005", "authors": "Ishikura S, Usami N, Araki M, Hara A", "reference": { "type": "PubMed", "id": "15809331", "url": "https://pubmed.ncbi.nlm.nih.gov/15809331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2S2-1", "protein_name": "Lambda-crystallin homolog", "gene_name": "CRYL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00796-1", "protein_name": "Sorbitol dehydrogenase", "gene_name": "SORD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14550-1", "protein_name": "Aldo-keto reductase family 1 member A1", "gene_name": "AKR1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75191-1", "protein_name": "Xylulose kinase", "gene_name": "XYLB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4W1-1", 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The primary structure of the human liver enzyme.", "journal": "European journal of biochemistry", "date": "1989", "authors": "Karlsson C, Maret W, Auld DS, Hoog JO, Jornvall H", "reference": { "type": "PubMed", "id": "2691249", "url": "https://pubmed.ncbi.nlm.nih.gov/2691249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2S2-1", "protein_name": "Lambda-crystallin homolog", "gene_name": "CRYL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00796-1", "protein_name": "Sorbitol dehydrogenase", "gene_name": "SORD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15121-1", "protein_name": "Aldo-keto reductase family 1 member B1", "gene_name": "AKR1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14550-1", "protein_name": "Aldo-keto reductase family 1 member A1", "gene_name": "AKR1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75191-1", "protein_name": "Xylulose kinase", "gene_name": "XYLB", "tax_name": "Human" }, { 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WW", "reference": { "type": "PubMed", "id": "3170592", "url": "https://pubmed.ncbi.nlm.nih.gov/3170592" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2S2-1", "protein_name": "Lambda-crystallin homolog", "gene_name": "CRYL1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2S2", "url": "https://www.uniprot.org/uniprotkb/Q9Y2S2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3170592", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"Race, Prevalence of POLE and POLD1 Alterations, and Survival Among Patients With Endometrial Cancer.", "journal": "JAMA network open", "date": "2024-01-02", "authors": "Zheng Shuhua, Donnelly Eric D, Strauss Jonathan B", "reference": { "type": "PubMed", "id": "38231514", "url": "https://pubmed.ncbi.nlm.nih.gov/38231514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07864-1", "protein_name": "DNA polymerase epsilon catalytic subunit A", "gene_name": "POLE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q07864", "url": "https://www.uniprot.org/uniprotkb/Q07864" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38231514", "abstract": "", "glycosylation": [], 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"Aging", "date": "2020", "authors": "Yue Z, Shusheng J, Hongtao S, Shu Z, Lan H, Qingyuan Z, Shaoqiang C, Yuanxi H", "reference": { "type": "PubMed", "id": "32716908", "url": "https://pubmed.ncbi.nlm.nih.gov/32716908" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H773-1", "protein_name": "dCTP pyrophosphatase 1", "gene_name": "DCTPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15274-1", "protein_name": "Nicotinate-nucleotide pyrophosphorylase [carboxylating]", "gene_name": "QPRT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H773", "url": "https://www.uniprot.org/uniprotkb/Q9H773" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32716908", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterisation of a new human and murine member of the DnaJ family of proteins.", "journal": "Biochem. Biophys. Res. Commun.", "date": "1998", "authors": "Silins G, Grimmond S, Hayward N", "reference": { "type": "PubMed", "id": "9473517", "url": "https://pubmed.ncbi.nlm.nih.gov/9473517" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NNZ3-1", "protein_name": "DnaJ homolog subfamily C member 4", "gene_name": "DNAJC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9D844-1", "protein_name": "DnaJ homolog subfamily C member 4", "gene_name": "Dnajc4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NNZ3", "url": "https://www.uniprot.org/uniprotkb/Q9NNZ3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9473517", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human homologue of fission Yeast cdc27, p66, is a component of active human DNA polymerase delta.", "journal": "J. Biochem.", "date": "2001", "authors": "Shikata K, Ohta S, Yamada K, Obuse C, Yoshikawa H, Tsurimoto T", "reference": { "type": "PubMed", "id": "11328591", "url": "https://pubmed.ncbi.nlm.nih.gov/11328591" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15054-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49005-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P28340", "url": "https://www.uniprot.org/uniprotkb/P28340" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11328591", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mediation of proliferating cell nuclear antigen (PCNA)-dependent DNA replication through a conserved p21(Cip1)-like PCNA-binding motif present in the third subunit of human DNA polymerase delta.", "journal": "J. Biol. 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MMS19 assembles iron-sulfur proteins required for DNA metabolism and genomic integrity.", "journal": "Science (New York, N.Y.)", "date": "2012", "authors": "Stehling O, Vashisht AA, Mascarenhas J, Jonsson ZO, Sharma T, Netz DJ, Pierik AJ, Wohlschlegel JA, Lill R", "reference": { "type": "PubMed", "id": "22678362", "url": "https://pubmed.ncbi.nlm.nih.gov/22678362" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5Y2-1", "protein_name": "Cytosolic Fe-S cluster assembly factor NUBP2", "gene_name": "NUBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI81-1", "protein_name": "Anamorsin", "gene_name": "CIAPIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB4-1", "protein_name": "NADPH-dependent diflavin oxidoreductase 1", "gene_name": "NDOR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53384-1", "protein_name": "Cytosolic Fe-S cluster assembly factor NUBP1", "gene_name": "NUBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3D0-1", "protein_name": "Cytosolic iron-sulfur assembly component 2B", "gene_name": "CIAO2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76071-1", "protein_name": "Probable cytosolic iron-sulfur protein assembly protein CIAO1", "gene_name": "CIAO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T76-1", "protein_name": "MMS19 nucleotide excision repair protein homolog", "gene_name": "MMS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40469-1", "protein_name": "DNA repair/transcription protein MET18/MMS19", "gene_name": "MET18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9NZ71-1", "protein_name": "Regulator of telomere elongation helicase 1", "gene_name": "RTEL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX63-1", "protein_name": "Fanconi anemia group J protein", "gene_name": "BRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6Q4-1", "protein_name": "Cytosolic iron-sulfur assembly component 3", "gene_name": "CIAO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75027-1", "protein_name": "Iron-sulfur clusters transporter ABCB7, mitochondrial", "gene_name": "ABCB7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P28340", "url": "https://www.uniprot.org/uniprotkb/P28340" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22678362", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ 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