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Pharmacol.", "date": "2016", "authors": "Bugel Sean M, Wehmas Leah C, La Du Jane K, Tanguay Robert L", "reference": { "type": "PubMed", "id": "26908177", "url": "https://pubmed.ncbi.nlm.nih.gov/26908177" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICR8-1", "protein_name": "Basigin", "gene_name": "bsg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QE31-1", "protein_name": "Calpain-3", "gene_name": "capn3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IB00-1", "protein_name": "Matrix metalloproteinase-17b isoform 1 precursor", "gene_name": "mmp17b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LYC9-1", "protein_name": "3.4.22.17; Calpain small subunit 1a", "gene_name": "capns1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3ALB2-1", "protein_name": "Calpastatin", "gene_name": "cast", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BLC4-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "capn1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICR8", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICR8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26908177", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Immunomodulatory drugs disrupt the cereblon-CD147-MCT1 axis to exert antitumor activity and teratogenicity.", "journal": "Nat. Med.", "date": "2016", "authors": "Eichner Ruth, Heider Michael, Fern\u00e1ndez-S\u00e1iz Vanesa, van Bebber Frauke, Garz Anne-Kathrin, Lemeer Simone, Rudelius Martina, Targosz Bianca-Sabrina, Jacobs Laura, Knorn Anna-Maria, Slawska Jolanta, Platzbecker Uwe, Germing Ulrich, Langer Christian, Knop Stefan, Einsele Herrmann, Peschel Christian, Haass Christian, Keller Ulrich, Schmid Bettina, G\u00f6tze Katharina S, Kuster Bernhard, Bassermann Florian", "reference": { "type": "PubMed", "id": "27294876", "url": "https://pubmed.ncbi.nlm.nih.gov/27294876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICR8-1", "protein_name": "Basigin", "gene_name": "bsg", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICR8", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICR8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27294876", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Common responses of fish embryos to metals: an integrated analysis of transcriptomes and methylomes in zebrafish embryos under the stress of copper ions or silver nanoparticles.", "journal": "Metallomics", "date": "2019", "authors": "Tai ZhiPeng, Guan PengPeng, Wang ZiYang, Li LingYa, Zhang Ting, Li GuoLiang, Liu Jing-Xia", "reference": { "type": "PubMed", "id": "31468037", "url": "https://pubmed.ncbi.nlm.nih.gov/31468037" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICR8-1", "protein_name": "Basigin", "gene_name": "bsg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F3I8-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "dhx15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKE0-1", "protein_name": "Calsequestrin", "gene_name": "casq1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBT9-1", "protein_name": "Zinc finger protein 385B", "gene_name": "znf385b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NGF4-1", "protein_name": "3.4.21.104; 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"Zebrafish slc30a10 deficiency revealed a novel compensatory mechanism of Atp2c1 in maintaining manganese homeostasis.", "journal": "PLoS Genet.", "date": "2017", "authors": "Xia Z, Wei J, Li Y, Wang J, Li W, Wang K, Hong X, Zhao L, Chen C, Min J, Wang F", "reference": { "type": "PubMed", "id": "28692648", "url": "https://pubmed.ncbi.nlm.nih.gov/28692648" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IEQ2-1", "protein_name": "Calcium/manganese antiporter SLC30A10", "gene_name": "slc30a10", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IEQ2", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IEQ2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28692648", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Dyn.", "date": "2022", "authors": "Germano Giuseppe, Porazzi Patrizia, Felix Carolyn A", "reference": { "type": "PubMed", "id": "35429189", "url": "https://pubmed.ncbi.nlm.nih.gov/35429189" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IEQ2-1", "protein_name": "Calcium/manganese antiporter SLC30A10", "gene_name": "slc30a10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6E2N3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM33", "gene_name": "trim33", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FGT5-1", "protein_name": "Focadhesin", "gene_name": "focad", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NVN2-1", "protein_name": "Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase", "gene_name": "hacd4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IEQ2", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IEQ2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35429189", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endothelial versus pronephron fate decision is modulated by the transcription factors Cloche/Npas4l, Tal1, and Lmo2.", "journal": "Sci. Adv.", "date": "2022", "authors": "Mattonet Kenny, Riemslagh Fr\u00e9derike W, Guenther Stefan, Prummel Karin D, Kesavan Gokul, Hans Stefan, Ebersberger Ingo, Brand Michael, Burger Alexa, Reischauer Sven, Mosimann Christian, Stainier Didier Y R", "reference": { "type": "PubMed", "id": "36044573", "url": "https://pubmed.ncbi.nlm.nih.gov/36044573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IEQ2-1", "protein_name": "Calcium/manganese antiporter SLC30A10", "gene_name": "slc30a10", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IEQ2", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IEQ2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36044573", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endoderm-derived islet1-expressing cells differentiate into endothelial cells to function as the vascular HSPC niche in zebrafish.", "journal": "Dev. Cell", "date": "2023", "authors": "Yamamoto T., Kikuchi K., Nakajima H., Mochizuki N., Sako K., Ishikawa H., Fukumoto M., Fukui H., Chiba A., Stainier D.Y.R., Kwon H.B., Hui S.P., Mattonet K., Dobreva G.D., Helker C.S.M.", "reference": { "type": "PubMed", "id": "36693371", "url": "https://pubmed.ncbi.nlm.nih.gov/36693371" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IEQ2-1", "protein_name": "Calcium/manganese antiporter SLC30A10", "gene_name": "slc30a10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JQ56-1", "protein_name": "Tumor protein 63 (p63)", "gene_name": "tp63", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IEQ2", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IEQ2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36693371", "abstract": "", 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Peng, Tong Xiangjun, Zhu Zuoyan, Lin Shuo, Zhang Bo", "reference": { "type": "PubMed", "id": "23748566", "url": "https://pubmed.ncbi.nlm.nih.gov/23748566" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4II16-1", "protein_name": "Proteasome inhibitor PI31 subunit", "gene_name": "psmf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RDA7-1", "protein_name": "General transcription factor 3C polypeptide 3", "gene_name": "gtf3c3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4II16", "url": "https://www.uniprot.org/uniprotkb/A0A0R4II16" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23748566", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Rep.", "date": "2015", "authors": "Zhao Yanbin, Zhang Kun, Giesy John P, Hu Jianying", "reference": { "type": "PubMed", "id": "25711679", "url": "https://pubmed.ncbi.nlm.nih.gov/25711679" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJK6-1", "protein_name": "Hepatocyte nuclear factor 4-gamma isoform X1", "gene_name": "hnf4g", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AQK6-1", "protein_name": "Nuclear receptor subfamily 4 group A member 2", "gene_name": "nr4a3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JJ08-1", "protein_name": "RAR-related orphan receptor C b", "gene_name": "rorcb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W3I2-1", "protein_name": "Nuclear receptor subfamily 0 group B member 2", "gene_name": "nr0b2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TYQ7-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2 isoform X2", "gene_name": "nr2c2", "tax_name": 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Sci.", "date": "2013", "authors": "Carlson Patrick, Smalley David M, Van Beneden Rebecca J", "reference": { "type": "PubMed", "id": "23570992", "url": "https://pubmed.ncbi.nlm.nih.gov/23570992" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJL2-1", "protein_name": "Alpha-galactosidase", "gene_name": "naga", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IJL2", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IJL2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23570992", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "2,3,7,8-Tetrachlorodibenzo-p-dioxin upregulates FoxQ1b in zebrafish jaw primordium.", "journal": "Chem. 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Toxicol.", "date": "2010", "authors": "Planchart Antonio, Mattingly Carolyn J", "reference": { "type": "PubMed", "id": "20055451", "url": "https://pubmed.ncbi.nlm.nih.gov/20055451" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJS9-1", "protein_name": "Forkhead box protein Q1a", "gene_name": "foxq1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1U091-1", "protein_name": "Forkhead box protein Q1b", "gene_name": "foxq1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IJS9", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IJS9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20055451", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping single-cell atlases throughout Metazoa unravels cell type evolution.", "journal": "Elife", "date": "2021", "authors": "Tarashansky 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Genomics", "date": "2022", "authors": "Ferre-Fern\u00e1ndez Jes\u00fas-Jos\u00e9, Muheisen Sanaa, Thompson Samuel, Semina Elena V", "reference": { "type": "PubMed", "id": "36284357", "url": "https://pubmed.ncbi.nlm.nih.gov/36284357" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJS9-1", "protein_name": "Forkhead box protein Q1a", "gene_name": "foxq1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1U091-1", "protein_name": "Forkhead box protein Q1b", "gene_name": "foxq1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IJS9", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IJS9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36284357", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Ther.", "date": "2021", "authors": "Lambert MR, Spinazzola JM, Widrick JJ, Pakula A, Conner JR, Chin JE, Owens JM, Kunkel LM", "reference": { "type": "PubMed", "id": "33221436", "url": "https://pubmed.ncbi.nlm.nih.gov/33221436" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJT4-1", "protein_name": "Phosphodiesterase", "gene_name": "pde10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q00169-1", "protein_name": "Phosphatidylinositol transfer protein alpha isoform", "gene_name": "PITPNA", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IJT4", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IJT4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33221436", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SMN deficiency alters Nrxn2 expression and splicing in zebrafish and mouse models of spinal muscular atrophy.", "journal": "Hum. Mol. Genet.", "date": "2014", "authors": "See Kelvin, Yadav Preeti, Giegerich Marieke, Cheong Pearl S, Graf Martin, Vyas Himanshu, Lee Serene G P, Mathavan Sinnakaruppan, Fischer Utz, Sendtner Michael, Winkler Christoph", "reference": { "type": "PubMed", "id": "24218366", "url": "https://pubmed.ncbi.nlm.nih.gov/24218366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJU5-1", "protein_name": "Synapsin-1", "gene_name": "syn2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6A6-1", "protein_name": "GDNF family receptor alpha-2", "gene_name": "gfra2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W5C6-1", "protein_name": "Sorting nexin", "gene_name": "snx6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IJU5", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IJU5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": 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Sameera, Sharma Rahul, Brahmendra Swamy Cherukuvada V, Idris Mohammed M", "reference": { "type": "PubMed", "id": "26959078", "url": "https://pubmed.ncbi.nlm.nih.gov/26959078" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJU5-1", "protein_name": "Synapsin-1", "gene_name": "syn2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TF89-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "lrrk2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IJU5", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IJU5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26959078", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Immunol.", "date": "2007", "authors": "Chang M X, Nie P, Wei L L", "reference": { "type": "PubMed", "id": "17296228", "url": "https://pubmed.ncbi.nlm.nih.gov/17296228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IJX9-1", "protein_name": "Peptidoglycan recognition protein 6", "gene_name": "pglyrp6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IJX9", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IJX9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17296228", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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