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metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice.", "journal": "Chemistry & biology", "date": "2010", "authors": "Kopp F, Komatsu T, Nomura DK, Trauger SA, Thomas JR, Siuzdak G, Simon GM, Cravatt BF", "reference": { "type": "PubMed", "id": "20797612", "url": "https://pubmed.ncbi.nlm.nih.gov/20797612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JL56-1", "protein_name": "Glycerophosphodiester phosphodiesterase 1", "gene_name": "Gde1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JL56", "url": "https://www.uniprot.org/uniprotkb/Q9JL56" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.20797612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Burns Matthew P, Ulloa Nadine M, Tokumura Akira, Ueda Natsuo", "reference": { "type": "PubMed", "id": "21801852", "url": "https://pubmed.ncbi.nlm.nih.gov/21801852" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JL56-1", "protein_name": "Glycerophosphodiester phosphodiesterase 1", "gene_name": "Gde1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BH82-1", "protein_name": "N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D", "gene_name": "Napepld", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JL56", "url": "https://www.uniprot.org/uniprotkb/Q9JL56" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21801852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The genetic architecture of NAFLD among inbred strains of mice.", "journal": "eLife", "date": "2015", "authors": "Hui ST, Parks BW, Org E, Norheim F, Che N, Pan C, Castellani LW, Charugundla S, Dirks DL, Psychogios N, Neuhaus I, Gerszten RE, Kirchgessner T, Gargalovic PS, Lusis AJ", "reference": { "type": "PubMed", "id": "26067236", "url": "https://pubmed.ncbi.nlm.nih.gov/26067236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JL56-1", "protein_name": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GDE5/Gpcpd1 activity determines phosphatidylcholine composition in skeletal muscle and regulates contractile force in mice.", "journal": "Communications biology", "date": "2024-05-20", "authors": "Aisyah Rahmawati, Ohshima Noriyasu, Watanabe Daiki, Nakagawa Yoshiko, Sakuma Tetsushi, Nitschke Felix, Nakamura Minako, Sato Koji, Nakahata Kaori, Yokoyama Chihiro, Marchioni Charlotte R, Kumrungsee Thanutchaporn, Shimizu Takahiko, Sotomaru Yusuke, Takeo Toru, Nakagata Naomi, Izumi Takashi, Miura Shinji, Minassian Berge A, Yamamoto Takashi, Wada Masanobu, Yanaka Noriyuki", "reference": { "type": "PubMed", "id": "38769369", "url": "https://pubmed.ncbi.nlm.nih.gov/38769369" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JL56-1", "protein_name": "Glycerophosphodiester phosphodiesterase 1", "gene_name": "Gde1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JL56", "url": "https://www.uniprot.org/uniprotkb/Q9JL56" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38769369", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"authors": "Garnon J, Lachance C, Di Marco S, Hel Z, Marion D, Ruiz MC, Newkirk MM, Khandjian EW, Radzioch D", "reference": { "type": "PubMed", "id": "15548538", "url": "https://pubmed.ncbi.nlm.nih.gov/15548538" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61584-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "Fxr1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61584", "url": "https://www.uniprot.org/uniprotkb/Q61584" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15548538", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Sci.", "date": "1998", "authors": "Claeysen S, Faye P, Sebben M, Taviaux S, Bockaert J, Dumuis A", "reference": { "type": "PubMed", "id": "9928238", "url": "https://pubmed.ncbi.nlm.nih.gov/9928238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P97288-1", "protein_name": "5-hydroxytryptamine receptor 4", "gene_name": "Htr4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P97288", "url": "https://www.uniprot.org/uniprotkb/P97288" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9928238", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted disruption of the mouse Caspase 8 gene ablates cell death induction by the TNF receptors, Fas/Apo1, and DR3 and is lethal prenatally.", "journal": "Immunity", "date": "1998", "authors": "Varfolomeev EE, Schuchmann M, Luria V, Chiannilkulchai N, Beckmann JS, Mett IL, Rebrikov D, Brodianski VM, Kemper OC, Kollet O, Lapidot T, Soffer D, Sobe T, Avraham KB, Goncharov T, Holtmann H, Lonai P, Wallach D", "reference": { "type": "PubMed", "id": "9729047", "url": "https://pubmed.ncbi.nlm.nih.gov/9729047" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O89110-1", "protein_name": "Caspase-8", "gene_name": "Casp8", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O89110", "url": "https://www.uniprot.org/uniprotkb/O89110" } ], 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"authors": "Van de Craen M, Van Loo G, Declercq W, Schotte P, Van den brande I, Mandruzzato S, van der Bruggen P, Fiers W, Vandenabeele P", "reference": { "type": "PubMed", "id": "9837723", "url": "https://pubmed.ncbi.nlm.nih.gov/9837723" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O89110-1", "protein_name": "Caspase-8", "gene_name": "Casp8", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O89110", "url": "https://www.uniprot.org/uniprotkb/O89110" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9837723", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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CD36-mediated orosensory perception of long-chain fatty acids in the mouse.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "2008-05", "authors": "Gaillard Dany, Laugerette Fabienne, Darcel Nicolas, El-Yassimi Abdelghani, Passilly-Degrace Patricia, Hichami Aziz, Khan Naim Akhtar, Montmayeur Jean-Pierre, Besnard Philippe", "reference": { "type": "PubMed", "id": "18162488", "url": "https://pubmed.ncbi.nlm.nih.gov/18162488" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08857-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "Cd36", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q08857", "url": "https://www.uniprot.org/uniprotkb/Q08857" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18162488", "abstract": "", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CD36, a scavenger receptor involved in immunity, metabolism, angiogenesis, and behavior.", "journal": "Science signaling", "date": "2009-05-26", "authors": "Silverstein Roy L, Febbraio Maria", "reference": { "type": "PubMed", "id": "19471024", "url": "https://pubmed.ncbi.nlm.nih.gov/19471024" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08857-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "Cd36", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P16671-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "CD36", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q08857", "url": "https://www.uniprot.org/uniprotkb/Q08857" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19471024", 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Ainge Gary D, Larsen Dave S, Painter Gavin F, Rudd Pauline M, Dwek Raymond A, Hoebe Kasper, Beutler Bruce, Wilson Ian A", "reference": { "type": "PubMed", "id": "19847289", "url": "https://pubmed.ncbi.nlm.nih.gov/19847289" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08857-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "Cd36", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q08857", "url": "https://www.uniprot.org/uniprotkb/Q08857" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19847289", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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Rep.", "date": "2019", "authors": "Horton AJ, Brooker J, Streitfeld WS, Flessa ME, Pillai B, Simpson R, Clark CD, Gooz MB, Sutton KK, Foley AC, Lee KH", "reference": { "type": "PubMed", "id": "30742009", "url": "https://pubmed.ncbi.nlm.nih.gov/30742009" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PB51-1", "protein_name": "Coiled-coil domain-containing protein 117", "gene_name": "Ccdc117", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y3D0-1", "protein_name": "Cytosolic iron-sulfur assembly component 2B", "gene_name": "CIAO2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T76-1", "protein_name": "MMS19 nucleotide excision repair protein homolog", "gene_name": "MMS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWD4-1", "protein_name": "Coiled-coil domain-containing protein 117", "gene_name": "CCDC117", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Fat/vessel-derived secretory protein (Favine)/CCDC3 is involved in lipid accumulation.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Kobayashi S, Fukuhara A, Otsuki M, Suganami T, Ogawa Y, Morii E, Shimomura I", "reference": { "type": "PubMed", "id": "25605713", "url": "https://pubmed.ncbi.nlm.nih.gov/25605713" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9D6Y1-1", "protein_name": "Coiled-coil domain-containing protein 3", "gene_name": "Ccdc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9D6Y1", "url": "https://www.uniprot.org/uniprotkb/Q9D6Y1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25605713", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Chem.", "date": "2004", "authors": "Srichai MB, Konieczkowski M, Padiyar A, Konieczkowski DJ, Mukherjee A, Hayden PS, Kamat S, El-Meanawy MA, Khan S, Mundel P, Lee SB, Bruggeman LA, Schelling JR, Sedor JR", "reference": { "type": "PubMed", "id": "14736876", "url": "https://pubmed.ncbi.nlm.nih.gov/14736876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JLQ0-1", "protein_name": "CD2-associated protein", "gene_name": "Cd2ap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQJ8-1", "protein_name": "Wilms tumor protein 1-interacting protein", "gene_name": "Wtip", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22561-1", "protein_name": "Wilms tumor protein homolog", "gene_name": "Wt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6NIX2-1", "protein_name": "Wilms tumor protein 1-interacting protein", "gene_name": "WTIP", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JLQ0", "url": "https://www.uniprot.org/uniprotkb/Q9JLQ0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.14736876", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear relocation of the nephrin and CD2AP-binding protein dendrin promotes apoptosis of podocytes.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2007", "authors": "Asanuma K, Campbell KN, Kim K, Faul C, Mundel P", "reference": { "type": "PubMed", "id": "17537921", "url": "https://pubmed.ncbi.nlm.nih.gov/17537921" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JLQ0-1", "protein_name": "CD2-associated protein", "gene_name": "Cd2ap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91X05-1", "protein_name": "Podocin", "gene_name": "Nphs2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TS7-1", "protein_name": "Dendrin", "gene_name": "Ddn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K4G9-1", "protein_name": "Podocin", "gene_name": "Nphs2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R044-1", "protein_name": "Adhesion molecule nephrin", "gene_name": "Nphs1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9QZS7-1", "protein_name": "Nephrin", "gene_name": "Nphs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P50617-1", "protein_name": "Dendrin", "gene_name": "Ddn", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JLQ0", "url": "https://www.uniprot.org/uniprotkb/Q9JLQ0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17537921", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The high resolution NMR structure of the third SH3 domain of CD2AP.", "journal": "J. 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gene organization.", "journal": "Gene", "date": "2006", "authors": "Pugacheva Elena M, Kwon Yoo-Wook, Hukriede Neil A, Pack Svetlana, Flanagan Patrick T, Ahn Jong-Chan, Park Jeong Ae, Choi Kyu-Sil, Kim Kyu-Won, Loukinov Dmitri, Dawid Igor B, Lobanenkov Victor V", "reference": { "type": "PubMed", "id": "16647825", "url": "https://pubmed.ncbi.nlm.nih.gov/16647825" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T4N5-1", "protein_name": "Transcriptional repressor CTCF", "gene_name": "ctcf", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T4N5", "url": "https://www.uniprot.org/uniprotkb/A0AB32T4N5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16647825", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Biol.", "date": "2010", "authors": "Rhodes Jenny M, Bentley Fiona K, Print Cristin G, Dorsett Dale, Misulovin Ziva, Dickinson Emma J, Crosier Kathryn E, Crosier Philip S, Horsfield Julia A", "reference": { "type": "PubMed", "id": "20553708", "url": "https://pubmed.ncbi.nlm.nih.gov/20553708" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T4N5-1", "protein_name": "Transcriptional repressor CTCF", "gene_name": "ctcf", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T4N5", "url": "https://www.uniprot.org/uniprotkb/A0AB32T4N5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20553708", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).", "journal": "Nat. Methods", "date": "2011", "authors": "Sander Jeffry D, Dahlborg Elizabeth J, Goodwin Mathew J, Cade Lindsay, Zhang Feng, Cifuentes Daniel, Curtin Shaun J, Blackburn Jessica S, Thibodeau-Beganny Stacey, Qi Yiping, Pierick Christopher J, Hoffman Ellen, Maeder Morgan L, Khayter Cyd, Reyon Deepak, Dobbs Drena, Langenau David M, Stupar Robert M, Giraldez Antonio J, Voytas Daniel F, Peterson Randall T, Yeh Jing-Ruey J, Joung J Keith", "reference": { "type": "PubMed", "id": "21151135", "url": "https://pubmed.ncbi.nlm.nih.gov/21151135" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T4N5-1", "protein_name": "Transcriptional repressor CTCF", "gene_name": "ctcf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WG39-1", "protein_name": "Protein argonaute-1", "gene_name": "ago1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T4N5", "url": "https://www.uniprot.org/uniprotkb/A0AB32T4N5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21151135", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CTCF promotes muscle differentiation by modulating the activity of myogenic regulatory factors.", "journal": "J. 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Dev.", "date": "2018", "authors": "Carmona-Aldana Francisco, Zampedri Cecilia, Suaste-Olmos Fernando, Murillo-de-Ozores Adri\u00e1n, Guerrero Georgina, Arzate-Mej\u00eda Rodrigo, Maldonado Ernesto, Navarro Rosa E, Chimal-Monroy Jes\u00fas, Recillas-Targa F\u00e9lix", "reference": { "type": "PubMed", "id": "29723654", "url": "https://pubmed.ncbi.nlm.nih.gov/29723654" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T4N5-1", "protein_name": "Transcriptional repressor CTCF", "gene_name": "ctcf", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T4N5", "url": "https://www.uniprot.org/uniprotkb/A0AB32T4N5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29723654", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Neurol.", "date": "2022", "authors": "Alba-Gonz\u00e1lez Anabel, Folgueira M\u00f3nica, Castro Antonio, Anad\u00f3n Ram\u00f3n, Y\u00e1\u00f1ez Juli\u00e1n", "reference": { "type": "PubMed", "id": "35015905", "url": "https://pubmed.ncbi.nlm.nih.gov/35015905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T576-1", "protein_name": "Neurogranin (Protein kinase C substrate, RC3) b isoform X1", "gene_name": "spa17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NQC4-1", "protein_name": "Neurogranin (Protein kinase C substrate, RC3) a", "gene_name": "nrgna", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T576", "url": "https://www.uniprot.org/uniprotkb/A0AB32T576" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35015905", "abstract": "", "glycosylation": [], "mutagenesis": 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Sci.", "date": "2009", "authors": "Lefebvre Kathi A, Tilton Susan C, Bammler Theo K, Beyer Richard P, Srinouanprachan Sengkeo, Stapleton Patricia L, Farin Federico M, Gallagher Evan P", "reference": { "type": "PubMed", "id": "18936300", "url": "https://pubmed.ncbi.nlm.nih.gov/18936300" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TCE3-1", "protein_name": "Protein NDRG4 isoform X1", "gene_name": "ndrg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B7S8-1", "protein_name": "Nucleolar and coiled-body phosphoprotein 1 isoform X1", "gene_name": "nolc1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TCE3", "url": "https://www.uniprot.org/uniprotkb/A0AB32TCE3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18936300", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Heart chamber size in zebrafish is regulated redundantly by duplicated tbx2 genes.", "journal": "Dev. 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J. Haematol.", "date": "2014", "authors": "Balci Tugce B, Prykhozhij Sergey V, Teh Evelyn M, Da'as Sahar I, McBride Eileen, Liwski Robert, Chute Ian C, Leger Daniel, Lewis Stephen M, Berman Jason N", "reference": { "type": "PubMed", "id": "24989799", "url": "https://pubmed.ncbi.nlm.nih.gov/24989799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TCE3-1", "protein_name": "Protein NDRG4 isoform X1", "gene_name": "ndrg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N871-1", "protein_name": "UV excision repair protein RAD23", "gene_name": "rad23ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QF60-1", "protein_name": "Chromosome transmission fidelity protein 18 homolog", "gene_name": "chtf18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8PYT0-1", "protein_name": "UV excision repair protein RAD23", "gene_name": "rad23b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZYW0-1", "protein_name": "1.17.4.1; 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"Discovering miRNA Regulatory Networks in Holt-Oram Syndrome Using a Zebrafish Model.", "journal": "Front. Bioeng. Biotechnol.", "date": "2016", "authors": "D'Aurizio Romina, Russo Francesco, Chiavacci Elena, Baumgart Mario, Groth Marco, D'Onofrio Mara, Arisi Ivan, Rainaldi Giuseppe, Pitto Letizia, Pellegrini Marco", "reference": { "type": "PubMed", "id": "27471727", "url": "https://pubmed.ncbi.nlm.nih.gov/27471727" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TCE3-1", "protein_name": "Protein NDRG4 isoform X1", "gene_name": "ndrg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13ABE6-1", "protein_name": "Src substrate cortactin", "gene_name": "cttn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8HAM3-1", "protein_name": "Serum response factor", "gene_name": "srfa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TCE3", "url": "https://www.uniprot.org/uniprotkb/A0AB32TCE3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", 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David, Matthes Thomas, Bertrand Julien Y", "reference": { "type": "PubMed", "id": "27827822", "url": "https://pubmed.ncbi.nlm.nih.gov/27827822" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TCE3-1", "protein_name": "Protein NDRG4 isoform X1", "gene_name": "ndrg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7R9-1", "protein_name": "Uncharacterized protein LOC378872 isoform 2; Uncharacterized protein isoform X2", "gene_name": "fam49a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TCE3", "url": "https://www.uniprot.org/uniprotkb/A0AB32TCE3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27827822", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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