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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression and function of the mouse V-ATPase d subunit isoforms.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Nishi T, Kawasaki-Nishi S, Forgac M", "reference": { "type": "PubMed", "id": "12963731", "url": "https://pubmed.ncbi.nlm.nih.gov/12963731" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51863-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "Atp6v0d1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80SY3-1", "protein_name": "V-type proton ATPase subunit d 2", "gene_name": "Atp6v0d2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P51863", "url": "https://www.uniprot.org/uniprotkb/P51863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12963731", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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Neurosci.", "date": "1998", "authors": "Carri\u00f3n-V\u00e1zquez M, Fern\u00e1ndez A M, Chowen J, Nieto-Sampedro M", "reference": { "type": "PubMed", "id": "9753184", "url": "https://pubmed.ncbi.nlm.nih.gov/9753184" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51863-1", "protein_name": "V-type proton ATPase subunit d 1", "gene_name": "Atp6v0d1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P51863", "url": "https://www.uniprot.org/uniprotkb/P51863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9753184", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Commun.", "date": "2012", "authors": "Hayashi T, Kishida M, Nishizawa Y, Iijima M, Koriyama C, Nakamura M, Sano A, Kishida S", "reference": { "type": "PubMed", "id": "22366033", "url": "https://pubmed.ncbi.nlm.nih.gov/22366033" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5H8C4-1", "protein_name": "Intermembrane lipid transfer protein VPS13A", "gene_name": "Vps13a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q5H8C4", "url": "https://www.uniprot.org/uniprotkb/Q5H8C4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22366033", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel mammalian retromer component, Vps26B.", "journal": "Traffic", "date": "2005", "authors": "Kerr MC, Bennetts JS, Simpson F, Thomas EC, Flegg C, Gleeson PA, Wicking C, Teasdale RD", "reference": { "type": "PubMed", "id": "16190980", "url": "https://pubmed.ncbi.nlm.nih.gov/16190980" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C0E2-1", "protein_name": "Vacuolar protein sorting-associated protein 26B", "gene_name": "Vps26b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EQH3-1", "protein_name": "Vacuolar protein sorting-associated protein 35", "gene_name": "Vps35", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O75436-1", "protein_name": "Vacuolar protein sorting-associated protein 26A", "gene_name": "VPS26A", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16190980", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 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"Structure of Vps26B and mapping of its interaction with the retromer protein complex.", "journal": "Traffic (Copenhagen, Denmark)", "date": "2008", "authors": "Collins BM, Norwood SJ, Kerr MC, Mahony D, Seaman MN, Teasdale RD, Owen DJ", "reference": { "type": "PubMed", "id": "18088321", "url": "https://pubmed.ncbi.nlm.nih.gov/18088321" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C0E2-1", "protein_name": "Vacuolar protein sorting-associated protein 26B", "gene_name": "Vps26b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P40336-1", "protein_name": "Vacuolar protein sorting-associated protein 26A", "gene_name": "Vps26a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 197, "end_pos": 197, "sequence_org": "L", "sequence_mut": "S", "comment": "No endosomal localization; no effect on interaction with VPS35:VPS29 dimer; when associated with E-199.", "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" }, { "database": "PubMed", "id": "18088321", "url": "https://pubmed.ncbi.nlm.nih.gov/18088321" } ], "uniprot_canonical_ac": "Q8C0E2-1" }, { "start_pos": 199, "end_pos": 199, "sequence_org": "R", "sequence_mut": "E", "comment": "No endosomal localization; no effect on interaction with VPS35:VPS29 dimer; when associated with S-197.", "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" }, { "database": "PubMed", "id": "18088321", "url": "https://pubmed.ncbi.nlm.nih.gov/18088321" } ], "uniprot_canonical_ac": "Q8C0E2-1" }, { "start_pos": 233, "end_pos": 234, "sequence_org": "IM", "sequence_mut": "DN", "comment": "Disrupts interaction with VPS35:VPS29 dimer; no endosomal localization.", "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" }, { "database": "PubMed", "id": "18088321", "url": "https://pubmed.ncbi.nlm.nih.gov/18088321" } ], "uniprot_canonical_ac": "Q8C0E2-1" }, { "start_pos": 240, "end_pos": 242, "sequence_org": "RGE", "sequence_mut": "SAS", "comment": "No endosomal localization; no effect on interaction with VPS35:VPS29 dimer.", "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" }, { "database": "PubMed", "id": "18088321", "url": "https://pubmed.ncbi.nlm.nih.gov/18088321" } ], "uniprot_canonical_ac": "Q8C0E2-1" }, { "start_pos": 245, "end_pos": 245, "sequence_org": "P", "sequence_mut": "S", "comment": "Disrupts interaction with VPS35:VPS29 dimer; no endosomal localization; when associated with S-247.", "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" }, { "database": "PubMed", "id": "18088321", "url": "https://pubmed.ncbi.nlm.nih.gov/18088321" } ], "uniprot_canonical_ac": "Q8C0E2-1" }, { "start_pos": 247, "end_pos": 247, "sequence_org": "R", "sequence_mut": "S", "comment": "Disrupts interaction with VPS35:VPS29 dimer; no endosomal localization; when associated with S-245.", "evidence": [ { "database": "UniProtKB", "id": "Q8C0E2", "url": "https://www.uniprot.org/uniprotkb/Q8C0E2" }, { "database": "PubMed", "id": "18088321", "url": "https://pubmed.ncbi.nlm.nih.gov/18088321" } ], "uniprot_canonical_ac": "Q8C0E2-1" } ], "record_id": "pubmed.18088321", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vps26A and Vps26B subunits define distinct retromer complexes.", "journal": "Traffic (Copenhagen, Denmark)", "date": "2011", "authors": "Bugarcic A, Zhe Y, Kerr MC, Griffin J, Collins BM, Teasdale RD", "reference": { "type": "PubMed", "id": "21920005", "url": "https://pubmed.ncbi.nlm.nih.gov/21920005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C0E2-1", "protein_name": "Vacuolar protein sorting-associated protein 26B", "gene_name": "Vps26b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P40336-1", "protein_name": "Vacuolar protein 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "WASH knockout T cells demonstrate defective receptor trafficking, proliferation, and effector function.", "journal": "Molecular and cellular biology", "date": "2013-03", "authors": "Piotrowski Joshua T, Gomez Timothy S, Schoon Renee A, Mangalam Ashutosh K, Billadeau Daniel D", "reference": { "type": "PubMed", "id": "23275443", "url": "https://pubmed.ncbi.nlm.nih.gov/23275443" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VDD8-1", "protein_name": "WASH complex subunit 1", "gene_name": "Washc1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VDD8", "url": "https://www.uniprot.org/uniprotkb/Q8VDD8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23275443", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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[] } ] }, { "title": "TBC1D23 is a bridging factor for endosomal vesicle capture by golgins at the trans-Golgi.", "journal": "Nat. Cell Biol.", "date": "2017", "authors": "Shin JJH, Gillingham AK, Begum F, Chadwick J, Munro S", "reference": { "type": "PubMed", "id": "29084197", "url": "https://pubmed.ncbi.nlm.nih.gov/29084197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VDD8-1", "protein_name": "WASH complex subunit 1", "gene_name": "Washc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PGL7-1", "protein_name": "WASH complex subunit 2", "gene_name": "Washc2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91VW5-1", "protein_name": "Golgin subfamily A member 4", "gene_name": "Golga4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5T1M5-1", "protein_name": "FK506-binding protein 15", "gene_name": "FKBP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P9Q6-1", "protein_name": "FK506-binding protein 15", "gene_name": "Fkbp15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CW79-1", "protein_name": "Golgin subfamily A member 1", "gene_name": "Golga1", 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"Comprehensive analysis of lncRNAs involved in skeletal muscle development in ZBED6-knockout Bama pigs.", "journal": "BMC genomics", "date": "2021", "authors": "Wang D, Pu Y, Li Y, Pan D, Wang S, Tian W, Ma Y, Jiang L", "reference": { "type": "PubMed", "id": "34348644", "url": "https://pubmed.ncbi.nlm.nih.gov/34348644" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D2EAC2-1", "protein_name": "Zinc finger BED domain-containing protein 6", "gene_name": "Zbed6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A0A4X1V4A0-1", "protein_name": "Zinc finger, BED-type containing 6", "gene_name": "ZBED6", "tax_name": "Pig" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "D2EAC2", "url": "https://www.uniprot.org/uniprotkb/D2EAC2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.34348644", "abstract": "", "glycosylation": [], 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survival and differentiation of early T-lineage progenitors is regulated by the BTB/POZ domain transcription factor Miz-1.", "journal": "Blood", "date": "2011-03-24", "authors": "Saba Ingrid, Kosan Christian, Vassen Lothar, M\u00f6r\u00f6y Tarik", "reference": { "type": "PubMed", "id": "21258009", "url": "https://pubmed.ncbi.nlm.nih.gov/21258009" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60821-1", "protein_name": "Zinc finger and BTB domain-containing protein 17", "gene_name": "Zbtb17", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60821", "url": "https://www.uniprot.org/uniprotkb/Q60821" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21258009", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Chelsea, Memon Omar, Brinster Lauren, Soleilhavoup Clement, Panman Lia, Badea Tudor C, Minella Andrea, Lopez Antonio Jacobo, Thomasy Sara M, Moshiri Ala, Blain Delphine, Hufnagel Robert B, Cogliati Tiziana, Bharti Kapil, Brooks Brian P", "reference": { "type": "PubMed", "id": "36326727", "url": "https://pubmed.ncbi.nlm.nih.gov/36326727" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TMA2-1", "protein_name": "Zinc finger protein 503", "gene_name": "Znf503", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TMA2", "url": "https://www.uniprot.org/uniprotkb/Q7TMA2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.36326727", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Cell Biol.", "date": "2012", "authors": "Elbediwy Ahmed, Zihni Ceniz, Terry Stephen J, Clark Peter, Matter Karl, Balda Maria S", "reference": { "type": "PubMed", "id": "22891260", "url": "https://pubmed.ncbi.nlm.nih.gov/22891260" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55194-1", "protein_name": "SH3 domain-binding protein 1", "gene_name": "Sh3bp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q0VF96-1", "protein_name": "Cingulin-like protein 1", "gene_name": "CGNL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52907-1", "protein_name": "F-actin-capping protein subunit alpha-1", "gene_name": "CAPZA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5K6-1", "protein_name": "CD2-associated protein", "gene_name": "CD2AP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3L3-1", "protein_name": "SH3 domain-binding protein 1", "gene_name": "SH3BP1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, 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"3BP-1, an SH3 domain binding protein, has GAP activity for Rac and inhibits growth factor-induced membrane ruffling in fibroblasts.", "journal": "The EMBO journal", "date": "1995-07-03", "authors": "Cicchetti P, Ridley A J, Zheng Y, Cerione R A, Baltimore D", "reference": { "type": "PubMed", "id": "7621827", "url": "https://pubmed.ncbi.nlm.nih.gov/7621827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55194-1", "protein_name": "SH3 domain-binding protein 1", "gene_name": "Sh3bp1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P55194", "url": "https://www.uniprot.org/uniprotkb/P55194" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7621827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Traf2 and NCK Interacting Kinase Is a Critical Regulator of Procollagen I Trafficking and Hepatic Fibrogenesis in Mice.", "journal": "Hepatology 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