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559292, "evidence": [ { "database": "UniProtKB", "id": "P39013", "url": "https://www.uniprot.org/uniprotkb/P39013" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10972812", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Sla1p serves as the targeting signal recognition factor for NPFX(1,2)D-mediated endocytosis.", "journal": "J. Cell Biol.", "date": "2002", "authors": "Howard James P, Hutton Jenna L, Olson John M, Payne Gregory S", "reference": { "type": "PubMed", "id": "11940605", "url": "https://pubmed.ncbi.nlm.nih.gov/11940605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39013-1", "protein_name": "Actin cytoskeleton-regulatory complex protein END3", "gene_name": "END3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32790-1", "protein_name": "Actin cytoskeleton-regulatory complex protein SLA1", "gene_name": "SLA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39013", "url": "https://www.uniprot.org/uniprotkb/P39013" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11940605", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Biol. Cell", "date": "2001", "authors": "Ligr M, Velten I, Fr\u00f6hlich E, Madeo F, Ledig M, Fr\u00f6hlich K U, Wolf D H, Hilt W", "reference": { "type": "PubMed", "id": "11514626", "url": "https://pubmed.ncbi.nlm.nih.gov/11514626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39015-1", "protein_name": "Suppressor protein STM1", "gene_name": "STM1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39015", "url": "https://www.uniprot.org/uniprotkb/P39015" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11514626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "STM1, a gene which encodes a guanine quadruplex binding protein, interacts with CDC13 in Saccharomyces cerevisiae.", "journal": "Mol. Genet. Genomics", "date": "2002", "authors": "Hayashi N, Murakami S", "reference": { "type": "PubMed", "id": "12207228", "url": "https://pubmed.ncbi.nlm.nih.gov/12207228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39015-1", "protein_name": "Suppressor protein STM1", "gene_name": "STM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32797-1", "protein_name": "Cell division control protein 13", "gene_name": "CDC13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39015", "url": "https://www.uniprot.org/uniprotkb/P39015" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12207228", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Similarity between the association factor of ribosomal subunits and the protein Stm1p from Saccharomyces cerevisiae.", "journal": "Mem. Inst. Oswaldo Cruz", "date": "2004", "authors": "Correia Heriberto, Medina Rafael, Hern\u00e1ndez Alexandra, Bustamante Ekaterina, Chakraburtty Kalpana, Herrera Flor", "reference": { "type": "PubMed", "id": "15654430", "url": "https://pubmed.ncbi.nlm.nih.gov/15654430" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39015-1", "protein_name": "Suppressor protein STM1", "gene_name": "STM1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39015", "url": "https://www.uniprot.org/uniprotkb/P39015" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15654430", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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protein kinase gene.", "journal": "Yeast", "date": "1995", "authors": "Coglievina M, Bertani I, Klima R, Zaccaria P, Bruschi C V", "reference": { "type": "PubMed", "id": "7668046", "url": "https://pubmed.ncbi.nlm.nih.gov/7668046" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39016-1", "protein_name": "Suppressor protein MPT5", "gene_name": "MPT5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43637-1", "protein_name": "Serine/threonine-protein kinase TOS3", "gene_name": "TOS3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39016", "url": "https://www.uniprot.org/uniprotkb/P39016" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7668046", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Gen. Genet.", "date": "1994", "authors": "Kikuchi Y, Oka Y, Kobayashi M, Uesono Y, Toh-e A, Kikuchi A", "reference": { "type": "PubMed", "id": "7845352", "url": "https://pubmed.ncbi.nlm.nih.gov/7845352" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39016-1", "protein_name": "Suppressor protein MPT5", "gene_name": "MPT5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39016", "url": "https://www.uniprot.org/uniprotkb/P39016" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7845352", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of COX14, whose product is required for assembly of yeast cytochrome oxidase.", "journal": "J. Biol. Chem.", "date": "1995", "authors": "Glerum D M, Koerner T J, Tzagoloff A", "reference": { "type": "PubMed", "id": "7797555", "url": "https://pubmed.ncbi.nlm.nih.gov/7797555" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39103-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39103", "url": "https://www.uniprot.org/uniprotkb/P39103" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7797555", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stoichiometry of the peripheral stalk subunits E and G of yeast V1-ATPase determined by mass spectrometry.", "journal": "J. 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Chem.", "date": "2008", "authors": "Kitagawa Norton, Mazon Hortense, Heck Albert J R, Wilkens Stephan", "reference": { "type": "PubMed", "id": "18055462", "url": "https://pubmed.ncbi.nlm.nih.gov/18055462" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39111-1", "protein_name": "V-type proton ATPase subunit F", "gene_name": "VMA7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41807-1", "protein_name": "V-type proton ATPase subunit H", "gene_name": "VMA13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16140-1", "protein_name": "V-type proton ATPase subunit B", "gene_name": "VMA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P17255-1", "protein_name": "V-type proton ATPase catalytic subunit A", "gene_name": "VMA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22203-1", "protein_name": "V-type proton ATPase subunit E", "gene_name": "VMA4", "tax_name": "Baker's yeast" } ], "species": [ { "name": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Saccharomyces cerevisiae VMA7 gene encodes a 14-kDa subunit of the vacuolar H(+)-ATPase catalytic sector.", "journal": "The Journal of biological chemistry", "date": "1994-09-30", "authors": "Nelson H, Mandiyan S, Nelson N", "reference": { "type": "PubMed", "id": "7929071", "url": "https://pubmed.ncbi.nlm.nih.gov/7929071" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39111-1", "protein_name": "V-type proton ATPase subunit F", "gene_name": "VMA7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39111", "url": "https://www.uniprot.org/uniprotkb/P39111" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7929071", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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}, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39715-1", "protein_name": "Shuttling pre-60S factor ECM1", "gene_name": "ECM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53313-1", "protein_name": "Protein SDA1", "gene_name": "SDA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07896-1", "protein_name": "Nucleolar complex-associated protein 3", "gene_name": "NOC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08962-1", "protein_name": "60S ribosome subunit biogenesis protein NIP7", "gene_name": "NIP7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12019-1", "protein_name": "Midasin", "gene_name": "MDN1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40010", "url": "https://www.uniprot.org/uniprotkb/P40010" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain.", "journal": "Mol. Cell", "date": "2002", "authors": "Douangamath Alice, Filipp Fabian V, Klein Andr\u00e9 T J, Barnett Phil, Zou Peijian, Voorn-Brouwer Tineke, Vega M Cristina, Mayans Olga M, Sattler Michael, Distel Ben, Wilmanns Matthias", "reference": { "type": "PubMed", "id": "12453410", "url": "https://pubmed.ncbi.nlm.nih.gov/12453410" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P80667-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53112-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P80667", "url": "https://www.uniprot.org/uniprotkb/P80667" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12453410", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SH3 domain of the Saccharomyces cerevisiae peroxisomal membrane protein Pex13p functions as a docking site for Pex5p, a mobile receptor for the import PTS1-containing proteins.", "journal": "J. Cell Biol.", "date": "1996", "authors": "Elgersma Y, Kwast L, Klein A, Voorn-Brouwer T, van den Berg M, Metzig B, America T, Tabak H F, Distel B", "reference": { "type": "PubMed", "id": "8858166", "url": "https://pubmed.ncbi.nlm.nih.gov/8858166" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P80667-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P80667", "url": "https://www.uniprot.org/uniprotkb/P80667" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8858166", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Pex13p a peroxisomal membrane receptor for the PTS1 recognition factor.", "journal": "The Journal of cell biology", "date": "1996-10", "authors": "Erdmann R, Blobel G", "reference": { "type": "PubMed", "id": "8858167", "url": "https://pubmed.ncbi.nlm.nih.gov/8858167" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P80667-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P80667", "url": "https://www.uniprot.org/uniprotkb/P80667" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8858167", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA binding analysis of yeast REF2 and its two-hybrid interaction with a new gene product, FIR1.", "journal": "Gene expression", "date": "1996", "authors": "Russnak R, Pereira S, Platt T", "reference": { "type": "PubMed", "id": "9196079", "url": "https://pubmed.ncbi.nlm.nih.gov/9196079" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40020-1", "protein_name": "Factor interacting with REF2", "gene_name": "FIR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42073-1", "protein_name": "RNA end formation protein 2", "gene_name": "REF2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40020", "url": "https://www.uniprot.org/uniprotkb/P40020" } ], "common_name": "Baker's yeast", "glygen_name": 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components of the Tor2 complex.", "journal": "Current genetics", "date": "2005-05", "authors": "Ho Hsiang-Ling, Shiau Yu-Shih, Chen Mei-Yu", "reference": { "type": "PubMed", "id": "15809876", "url": "https://pubmed.ncbi.nlm.nih.gov/15809876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40061-1", "protein_name": "Target of rapamycin complex 2 subunit TSC11", "gene_name": "TSC11", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40061", "url": "https://www.uniprot.org/uniprotkb/P40061" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15809876", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Indication for a set of 14 different subunits in the eukaryotic proteasome core.", "journal": "Biochemistry", "date": "1994", "authors": "Heinemeyer W, Tr\u00f6ndle N, Albrecht G, Wolf D H", "reference": { "type": "PubMed", "id": "7918444", "url": "https://pubmed.ncbi.nlm.nih.gov/7918444" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40302-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PRE5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40308-1", "protein_name": "Triacylglycerol lipase 3", "gene_name": "TGL3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40303-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "PRE6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40302", "url": "https://www.uniprot.org/uniprotkb/P40302" } ], "common_name": "Baker's yeast", "glygen_name": 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the human 26 S protease.", "journal": "The Journal of biological chemistry", "date": "1995-04-21", "authors": "Lucero H A, Chojnicki E W, Mandiyan S, Nelson H, Nelson N", "reference": { "type": "PubMed", "id": "7721833", "url": "https://pubmed.ncbi.nlm.nih.gov/7721833" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40327-1", "protein_name": "26S proteasome regulatory subunit 4 homolog", "gene_name": "RPT2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40327", "url": "https://www.uniprot.org/uniprotkb/P40327" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 229, "end_pos": 229, "sequence_org": "K", "sequence_mut": "Q", "comment": "73% loss of ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "P40327", "url": 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Biol. 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteins connecting the nuclear pore complex with the nuclear interior.", "journal": "The Journal of cell biology", "date": "1999-03-08", "authors": "Strambio-de-Castillia C, Blobel G, Rout M P", "reference": { "type": "PubMed", "id": "10085285", "url": "https://pubmed.ncbi.nlm.nih.gov/10085285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40457-1", "protein_name": "Protein MLP2", "gene_name": "MLP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02455-1", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear pore complexes in the organization of silent telomeric chromatin.", "journal": "Nature", "date": "2000-01-06", "authors": "Galy V, Olivo-Marin J C, Scherthan H, Doye V, Rascalou N, Nehrbass U", "reference": { "type": "PubMed", "id": "10638763", "url": "https://pubmed.ncbi.nlm.nih.gov/10638763" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40457-1", "protein_name": "Protein MLP2", "gene_name": "MLP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02455-1", "protein_name": "Protein MLP1", "gene_name": "MLP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49687-1", "protein_name": "Nucleoporin NUP145", "gene_name": "NUP145", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40457", "url": "https://www.uniprot.org/uniprotkb/P40457" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10638763", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast.", "journal": "Nature cell biology", "date": "2002-03", "authors": "Feuerbach Frank, Galy Vincent, Trelles-Sticken Edgar, Fromont-Racine Micheline, Jacquier Alain, Gilson Eric, Olivo-Marin Jean-Christophe, Scherthan Harry, Nehrbass Ulf", "reference": { "type": "PubMed", "id": "11862215", "url": "https://pubmed.ncbi.nlm.nih.gov/11862215" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40457-1", "protein_name": "Protein MLP2", "gene_name": "MLP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02455-1", "protein_name": "Protein MLP1", "gene_name": "MLP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40457", "url": "https://www.uniprot.org/uniprotkb/P40457" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11862215", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { 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telomere length control.", "journal": "Journal of structural biology", "date": "2002", "authors": "Hediger Florence, Dubrana Karine, Gasser Susan M", "reference": { "type": "PubMed", "id": "12490156", "url": "https://pubmed.ncbi.nlm.nih.gov/12490156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40457-1", "protein_name": "Protein MLP2", "gene_name": "MLP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02455-1", "protein_name": "Protein MLP1", "gene_name": "MLP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P40457", "url": "https://www.uniprot.org/uniprotkb/P40457" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12490156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The nuclear pore complex-associated protein, Mlp2p, binds to the yeast spindle pole body and promotes its efficient assembly.", "journal": "The Journal of cell biology", "date": "2005-07-18", "authors": "Niepel Mario, Strambio-de-Castillia Caterina, Fasolo Joseph, Chait Brian T, Rout Michael P", "reference": { "type": "PubMed", "id": "16027220", "url": "https://pubmed.ncbi.nlm.nih.gov/16027220" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40457-1", "protein_name": "Protein MLP2", "gene_name": "MLP2", "tax_name": "Baker's yeast" }, { 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