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Chem.", "date": "1994", "authors": "Yamazoe M, Shirahige K, Rashid M B, Kaneko Y, Nakayama T, Ogasawara N, Yoshikawa H", "reference": { "type": "PubMed", "id": "8195160", "url": "https://pubmed.ncbi.nlm.nih.gov/8195160" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38071-1", "protein_name": "Enoyl-[acyl-carrier-protein] reductase, mitochondrial", "gene_name": "ETR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38071", "url": "https://www.uniprot.org/uniprotkb/P38071" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8195160", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sterol uptake induced by an impairment of pyridoxal phosphate synthesis in Saccharomyces cerevisiae: cloning and sequencing of the PDX3 gene encoding pyridoxine (pyridoxamine) phosphate oxidase.", "journal": "J. Bacteriol.", "date": "1995", "authors": "Loubbardi A, Marcireau C, Karst F, Guilloton M", "reference": { "type": "PubMed", "id": "7896706", "url": "https://pubmed.ncbi.nlm.nih.gov/7896706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38075-1", "protein_name": "Pyridoxamine 5'-phosphate oxidase", "gene_name": "PDX3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38074-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "HMT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38075", "url": "https://www.uniprot.org/uniprotkb/P38075" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7896706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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Katsunori, Ishibashi Shinya, Kunihiro Masayuki, Satoh Takaaki, Matsubara Kiyo, Oku Soichiro, Ono Bun-ichiro, Mabuchi Tadashi, Takeda Masaharu", "reference": { "type": "PubMed", "id": "12898710", "url": "https://pubmed.ncbi.nlm.nih.gov/12898710" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38077-1", "protein_name": "ATP synthase subunit gamma, mitochondrial", "gene_name": "ATP3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38077", "url": "https://www.uniprot.org/uniprotkb/P38077" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12898710", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"Regenberg B, D\u00fcring-Olsen L, Kielland-Brandt M C, Holmberg S", "reference": { "type": "PubMed", "id": "10654085", "url": "https://pubmed.ncbi.nlm.nih.gov/10654085" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38084-1", "protein_name": "Leu/Val/Ile amino-acid permease", "gene_name": "BAP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38967-1", "protein_name": "Tryptophan permease", "gene_name": "TAT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38971-1", "protein_name": "Basic amino-acid permease", "gene_name": "ALP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41815-1", "protein_name": "Valine amino-acid permease", "gene_name": "BAP3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53388-1", "protein_name": "Dicarboxylic amino acid permease", "gene_name": "DIP5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25376-1", "protein_name": "General amino acid permease AGP1", 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Cell. Biol.", "date": "1994", "authors": "Schmidt A, Hall M N, Koller A", "reference": { "type": "PubMed", "id": "7523855", "url": "https://pubmed.ncbi.nlm.nih.gov/7523855" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38085-1", "protein_name": "Valine/tyrosine/tryptophan amino-acid permease 1", "gene_name": "TAT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38967-1", "protein_name": "Tryptophan permease", "gene_name": "TAT2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38085", "url": "https://www.uniprot.org/uniprotkb/P38085" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7523855", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An analysis of the sequence of part of the right arm of chromosome II of S. cerevisiae reveals new genes encoding an amino-acid permease and a carboxypeptidase.", "journal": "Curr. Genet.", "date": "1994", "authors": "Nasr F, B\u00e9cam A M, Grzybowska E, Zagulski M, Slonimski P P, Herbert C J", "reference": { "type": "PubMed", "id": "7954890", "url": "https://pubmed.ncbi.nlm.nih.gov/7954890" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38090-1", "protein_name": "General amino acid permease AGP2", "gene_name": "AGP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38109-1", "protein_name": "Vacuolar serine-type carboxypeptidase ATG42", "gene_name": "ATG42", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38090", "url": "https://www.uniprot.org/uniprotkb/P38090" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7954890", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38277-1", "protein_name": "Uncharacterized protein YBR138C", "gene_name": "YBR1014", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38270-1", "protein_name": "Autophagy-related protein 14", "gene_name": "ATG14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38273-1", "protein_name": "Vacuolar fusion protein CCZ1", "gene_name": "CCZ1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00764-1", "protein_name": "Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 56 kDa subunit", "gene_name": "TPS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38271-1", "protein_name": "Pleckstrin homology domain protein OPY1", "gene_name": "OPY1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16140-1", "protein_name": "V-type proton ATPase subunit B", "gene_name": "VMA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20486-1", "protein_name": "Cyclin-dependent kinases regulatory subunit", "gene_name": "CKS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P18963-1", "protein_name": "Inhibitory regulator protein IRA1", "gene_name": "IRA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38090", "url": "https://www.uniprot.org/uniprotkb/P38090" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8091856", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of direct and indirect targets of the Gln3 and Gat1 activators by transcriptional profiling in response to nitrogen availability in the short and long term.", "journal": "FEMS Yeast Res.", "date": "2006", "authors": "Scherens Bart, Feller Andr\u00e9, Vierendeels Fabienne, Messenguy Francine, Dubois Evelyne", "reference": { "type": "PubMed", "id": "16879428", "url": "https://pubmed.ncbi.nlm.nih.gov/16879428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38109-1", "protein_name": "Vacuolar serine-type carboxypeptidase ATG42", "gene_name": "ATG42", "tax_name": "Baker's yeast" } ], "species": [ { "name": 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alkylation damage.", "journal": "The Biochemical journal", "date": "2005-10-15", "authors": "Flott Sonja, Rouse John", "reference": { "type": "PubMed", "id": "15975089", "url": "https://pubmed.ncbi.nlm.nih.gov/15975089" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38110-1", "protein_name": "Serine/threonine-protein kinase TEL1", "gene_name": "TEL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38111-1", "protein_name": "Serine/threonine-protein kinase MEC1", "gene_name": "MEC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12098-1", "protein_name": "Structure-specific endonuclease subunit SLX4", "gene_name": "SLX4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38110", "url": "https://www.uniprot.org/uniprotkb/P38110" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mutation in yeast Tel1p that causes differential effects on the DNA damage checkpoint and telomere maintenance.", "journal": "Current genetics", "date": "2005-11", "authors": "Chakhparonian Mikhail, Faucher David, Wellinger Raymund J", "reference": { "type": "PubMed", "id": "16228207", "url": "https://pubmed.ncbi.nlm.nih.gov/16228207" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38110-1", "protein_name": "Serine/threonine-protein kinase TEL1", "gene_name": "TEL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38110", "url": "https://www.uniprot.org/uniprotkb/P38110" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 1319, "end_pos": 1319, "sequence_org": "E", "sequence_mut": "K", "comment": "In TEL1-11; short telomere phenotype and impairs DNA-damage checkpoint function at 37 degrees Celsius.", "evidence": [ { "database": "UniProtKB", "id": "P38110", "url": 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transcriptional factor.", "journal": "Yeast", "date": "1994", "authors": "D\u00e9molis N, Mallet L, Jacquet M", "reference": { "type": "PubMed", "id": "7871891", "url": "https://pubmed.ncbi.nlm.nih.gov/7871891" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38128-1", "protein_name": "Transcription factor SMP1", "gene_name": "SMP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38302-1", "protein_name": "Pre-mRNA-splicing factor NTC20", "gene_name": "NTC20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38299-1", "protein_name": "Uncharacterized protein YBR184W", "gene_name": "YBR1306", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38126-1", "protein_name": "Pachytene checkpoint protein 2", "gene_name": "PCH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38300-1", "protein_name": "Inner membrane mitoribosome receptor MBA1, mitochondrial", "gene_name": "MBA1", "tax_name": "Baker's yeast" }, { 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"1999-06", "authors": "Louvet O, Roumanie O, Barthe C, Peypouquet M F, Schaeffer J, Doignon F, Crouzet M", "reference": { "type": "PubMed", "id": "10394895", "url": "https://pubmed.ncbi.nlm.nih.gov/10394895" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38146-1", "protein_name": "GTP-binding protein YPT10", "gene_name": "YPT10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39958-1", "protein_name": "Rab GDP-dissociation inhibitor", "gene_name": "GDI1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P38146", "url": "https://www.uniprot.org/uniprotkb/P38146" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10394895", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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