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"tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32344-1", "protein_name": "Small ribosomal subunit protein bS22, mitochondrial", "gene_name": "QRI5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28817", "url": "https://www.uniprot.org/uniprotkb/P28817" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.28154081", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 37 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The yeast lysyl-tRNA synthetase gene. Evidence for general amino acid control of its expression and domain structure of the encoded protein.", "journal": "J. Biol. Chem.", "date": "1988", "authors": "Mirande M, Waller J P", "reference": { "type": "PubMed", "id": "2903861", "url": "https://pubmed.ncbi.nlm.nih.gov/2903861" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28817-1", "protein_name": "Small ribosomal subunit protein mS47", "gene_name": "EHD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P13587-1", "protein_name": "Sodium/potassium exporting P-type ATPase 1", "gene_name": "ENA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15180-1", "protein_name": "Lysine--tRNA ligase, cytoplasmic", "gene_name": "KRS1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28817", "url": "https://www.uniprot.org/uniprotkb/P28817" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2903861", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of the gene encoding the IDH1 subunit of NAD(+)-dependent isocitrate dehydrogenase from Saccharomyces cerevisiae.", "journal": "J. Biol. Chem.", "date": "1992", "authors": "Cupp J R, McAlister-Henn L", "reference": { "type": "PubMed", "id": "1644826", "url": "https://pubmed.ncbi.nlm.nih.gov/1644826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28834-1", "protein_name": "Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial", "gene_name": "IDH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28834", "url": "https://www.uniprot.org/uniprotkb/P28834" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1644826", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chitinase is required for cell separation during growth of Saccharomyces cerevisiae.", "journal": "J. Biol. Chem.", "date": "1991", "authors": "Kuranda M J, Robbins P W", "reference": { "type": "PubMed", "id": "1918080", "url": "https://pubmed.ncbi.nlm.nih.gov/1918080" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29029-1", "protein_name": "Endochitinase", "gene_name": "CTS1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29029", "url": "https://www.uniprot.org/uniprotkb/P29029" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1918080", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Pas2 protein essential for peroxisome biogenesis is related to ubiquitin-conjugating enzymes.", "journal": "Nature", "date": "1992", "authors": "Wiebel F F, Kunau W H", "reference": { "type": "PubMed", "id": "1326082", "url": "https://pubmed.ncbi.nlm.nih.gov/1326082" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29340-1", "protein_name": "Ubiquitin-conjugating enzyme E2 PEX4", "gene_name": "PEX4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29340", "url": "https://www.uniprot.org/uniprotkb/P29340" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1326082", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ubiquitination of the peroxisomal import receptor Pex5p is required for its recycling.", "journal": "The Journal of cell biology", "date": "2007-04-23", "authors": "Platta Harald W, El Magraoui Fouzi, Schlee Daniel, Grunau Silke, Girzalsky Wolfgang, Erdmann Ralf", "reference": { "type": "PubMed", "id": "17452527", "url": "https://pubmed.ncbi.nlm.nih.gov/17452527" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29340-1", "protein_name": "Ubiquitin-conjugating enzyme E2 PEX4", "gene_name": "PEX4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35056-1", "protein_name": "Peroxisomal targeting signal receptor", "gene_name": "PEX5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39718-1", "protein_name": "Ubiquitin-conjugating enzyme E2 enzyme activator PEX22", "gene_name": "PEX22", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { 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Gen. Genet.", "date": "1991", "authors": "Yon J, Giallongo A, Fried M", "reference": { "type": "PubMed", "id": "2046660", "url": "https://pubmed.ncbi.nlm.nih.gov/2046660" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29453-1", "protein_name": "Large ribosomal subunit protein eL8B", "gene_name": "RPL8B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P17076-1", "protein_name": "Large ribosomal subunit protein eL8A", "gene_name": "RPL8A", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29453", "url": "https://www.uniprot.org/uniprotkb/P29453" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2046660", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biophys. Acta", "date": "1994", "authors": "Cusick M E", "reference": { "type": "PubMed", "id": "8286414", "url": "https://pubmed.ncbi.nlm.nih.gov/8286414" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29453-1", "protein_name": "Large ribosomal subunit protein eL8B", "gene_name": "RPL8B", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29453", "url": "https://www.uniprot.org/uniprotkb/P29453" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8286414", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The yeasts Rho1p and Pkc1p regulate the transport of chitin synthase III (Chs3p) from internal stores to the plasma membrane.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2003", "authors": "Valdivia Raphael H, Schekman Randy", "reference": { "type": "PubMed", "id": "12928491", "url": "https://pubmed.ncbi.nlm.nih.gov/12928491" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29465-1", "protein_name": "Chitin synthase 3", "gene_name": "CHS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06780-1", "protein_name": "GTP-binding protein RHO1", "gene_name": "RHO1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29465", "url": "https://www.uniprot.org/uniprotkb/P29465" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12928491", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DIT101 (CSD2, CAL1), a cell cycle-regulated yeast gene required for synthesis of chitin in cell walls and chitosan in spore walls.", "journal": "Yeast (Chichester, England)", "date": "1992-12", "authors": "Pammer M, Briza P, Ellinger A, Schuster T, Stucka R, Feldmann H, Breitenbach M", "reference": { "type": "PubMed", "id": "1293886", "url": "https://pubmed.ncbi.nlm.nih.gov/1293886" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29465-1", "protein_name": "Chitin synthase 3", "gene_name": "CHS3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29465", "url": "https://www.uniprot.org/uniprotkb/P29465" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1293886", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Cell. Biol.", "date": "1992", "authors": "Bulawa C E", "reference": { "type": "PubMed", "id": "1532231", "url": "https://pubmed.ncbi.nlm.nih.gov/1532231" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29465-1", "protein_name": "Chitin synthase 3", "gene_name": "CHS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40955-1", "protein_name": "Chitin biosynthesis protein CHS6", "gene_name": "CHS6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29465", "url": "https://www.uniprot.org/uniprotkb/P29465" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1532231", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Palmitoylation by the DHHC protein Pfa4 regulates the ER exit of Chs3.", "journal": "The Journal of cell biology", "date": "2006-07-03", "authors": "Lam Karen K Y, Davey Michael, Sun Beimeng, Roth Amy F, Davis Nicholas G, Conibear Elizabeth", "reference": { "type": "PubMed", "id": "16818716", "url": "https://pubmed.ncbi.nlm.nih.gov/16818716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29465-1", "protein_name": "Chitin synthase 3", "gene_name": "CHS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12006-1", "protein_name": "Palmitoyltransferase PFA4", "gene_name": "PFA4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38843-1", "protein_name": "Chitin synthase export chaperone", "gene_name": "CHS7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40955-1", "protein_name": "Chitin biosynthesis protein CHS6", "gene_name": "CHS6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12114-1", "protein_name": "Chitin biosynthesis protein CHS5", "gene_name": "CHS5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29465", "url": "https://www.uniprot.org/uniprotkb/P29465" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 108, "end_pos": 108, "sequence_org": "C", "sequence_mut": "A", "comment": "Causes mislocalization of chitin synthase CHS3 (PubMed:16818716). 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recognition particle required for its functional expression.", "journal": "EMBO J.", "date": "1994", "authors": "Brown J D, Hann B C, Medzihradszky K F, Niwa M, Burlingame A L, Walter P", "reference": { "type": "PubMed", "id": "7925282", "url": "https://pubmed.ncbi.nlm.nih.gov/7925282" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29478-1", "protein_name": "Signal recognition particle subunit SEC65", "gene_name": "SEC65", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32342-1", "protein_name": "Signal recognition particle subunit SRP21", "gene_name": "SRP21", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38687-1", "protein_name": "Signal recognition particle subunit SRP68", "gene_name": "SRP68", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38688-1", "protein_name": "Signal recognition particle subunit SRP72", "gene_name": "SRP72", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38985-1", 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early steps in yeast mannosylation.", "journal": "Molecular and cellular biology", "date": "1992-07", "authors": "Smith D J, Proudfoot A, Friedli L, Klig L S, Paravicini G, Payton M A", "reference": { "type": "PubMed", "id": "1377774", "url": "https://pubmed.ncbi.nlm.nih.gov/1377774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29952-1", "protein_name": "Mannose-6-phosphate isomerase", "gene_name": "PMI40", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P29952", "url": "https://www.uniprot.org/uniprotkb/P29952" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1377774", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": 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myo-inositol transporter genes of Saccharomyces cerevisiae.", "journal": "The Journal of biological chemistry", "date": "1991-06-15", "authors": "Nikawa J, Tsukagoshi Y, Yamashita S", "reference": { "type": "PubMed", "id": "2040626", "url": "https://pubmed.ncbi.nlm.nih.gov/2040626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30605-1", "protein_name": "Myo-inositol transporter 1", "gene_name": "ITR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P30606-1", "protein_name": "Myo-inositol transporter 2", "gene_name": "ITR2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P30605", "url": "https://www.uniprot.org/uniprotkb/P30605" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2040626", "abstract": "", "glycosylation": [], 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cerevisiae has three pathways for DNA interstrand crosslink repair.", "journal": "Mutation research", "date": "2001-12-19", "authors": "Grossmann K F, Ward A M, Matkovic M E, Folias A E, Moses R E", "reference": { "type": "PubMed", "id": "11738934", "url": "https://pubmed.ncbi.nlm.nih.gov/11738934" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30620-1", "protein_name": "DNA cross-link repair protein PSO2/SNM1", "gene_name": "PSO2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P30620", "url": "https://www.uniprot.org/uniprotkb/P30620" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11738934", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Genet.", "date": "1996", "authors": "Wolter R, Siede W, Brendel M", "reference": { "type": "PubMed", "id": "8628215", "url": "https://pubmed.ncbi.nlm.nih.gov/8628215" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30620-1", "protein_name": "DNA cross-link repair protein PSO2/SNM1", "gene_name": "PSO2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P30620", "url": "https://www.uniprot.org/uniprotkb/P30620" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8628215", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation of a Saccharomyces cerevisiae long chain fatty acyl:CoA synthetase gene (FAA1) and assessment of its role in protein N-myristoylation.", "journal": "J. 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cic1, an adaptor protein specifically linking the 26S proteasome to its substrate, the SCF component Cdc4.", "journal": "EMBO J.", "date": "2001", "authors": "J\u00e4ger S, Strayle J, Heinemeyer W, Wolf D H", "reference": { "type": "PubMed", "id": "11500370", "url": "https://pubmed.ncbi.nlm.nih.gov/11500370" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30657-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "PRE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21243-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "SCL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33299-1", "protein_name": "26S proteasome regulatory subunit 7 homolog", "gene_name": "RPT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40303-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "PRE6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07834-1", "protein_name": "Cell division control protein 4", "gene_name": "CDC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38779-1", "protein_name": "Proteasome-interacting protein CIC1", "gene_name": "CIC1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P30657", "url": "https://www.uniprot.org/uniprotkb/P30657" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11500370", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of the boronic acid-based proteasome inhibitor bortezomib in complex with the yeast 20S proteasome.", "journal": "Structure", "date": "2006", "authors": "Groll Michael, Berkers Celia R, Ploegh Hidde L, Ovaa Huib", "reference": { "type": "PubMed", "id": "16531229", "url": "https://pubmed.ncbi.nlm.nih.gov/16531229" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30657-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "PRE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32379-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PUP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40302-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PRE5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38624-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PRE3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21242-1", "protein_name": "Probable proteasome subunit alpha type-7", "gene_name": "PRE10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21243-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "SCL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22141-1", "protein_name": "Proteasome subunit beta type-4", "gene_name": "PRE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23638-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PRE9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23639-1", "protein_name": "Proteasome subunit alpha type-2", "gene_name": "PRE8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23724-1", "protein_name": "Proteasome subunit beta type-6", "gene_name": "PRE7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25043-1", "protein_name": "Proteasome subunit beta type-2", "gene_name": "PUP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25451-1", "protein_name": "Proteasome subunit beta type-3", "gene_name": "PUP3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P30656-1", "protein_name": "Proteasome subunit beta type-5", "gene_name": "PRE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40303-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "PRE6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P30657", "url": "https://www.uniprot.org/uniprotkb/P30657" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16531229", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structures of salinosporamide A (NPI-0052) and B (NPI-0047) in complex with the 20S proteasome reveal important consequences of beta-lactone ring opening and a mechanism for irreversible binding.", "journal": "J. Am. Chem. Soc.", "date": "2006", "authors": "Groll Michael, Huber Robert, Potts Barbara C M", "reference": { "type": "PubMed", "id": "16608349", "url": "https://pubmed.ncbi.nlm.nih.gov/16608349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30657-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "PRE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32379-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PUP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40302-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PRE5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38624-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PRE3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21242-1", "protein_name": "Probable proteasome subunit alpha type-7", "gene_name": "PRE10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21243-1", 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"Proteasome subunit beta type-5", "gene_name": "PRE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40303-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "PRE6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P30657", "url": "https://www.uniprot.org/uniprotkb/P30657" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16608349", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TMC-95-based inhibitor design provides evidence for the catalytic versatility of the proteasome.", "journal": "Chem. Biol.", "date": "2006", "authors": "Groll Michael, G\u00f6tz Marion, Kaiser Markus, Weyher Elisabeth, Moroder Luis", "reference": { "type": "PubMed", "id": "16793518", "url": "https://pubmed.ncbi.nlm.nih.gov/16793518" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30657-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "PRE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32379-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PUP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40302-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PRE5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38624-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PRE3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21242-1", "protein_name": "Probable proteasome subunit alpha type-7", "gene_name": "PRE10", "tax_name": "Baker's yeast" }, { 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"referenced_proteins": [ { "uniprot_canonical_ac": "P30665-1", "protein_name": "DNA replication licensing factor MCM4", "gene_name": "MCM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53091-1", "protein_name": "DNA replication licensing factor MCM6", "gene_name": "MCM6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P24279-1", "protein_name": "DNA replication licensing factor MCM3", "gene_name": "MCM3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29496-1", "protein_name": "Minichromosome maintenance protein 5", "gene_name": "MCM5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38132-1", "protein_name": "DNA replication licensing factor MCM7", "gene_name": "MCM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29469-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "MCM2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]