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Biophys. Mol. Biol.", "date": "2003", "authors": "van Vliet Catherine, Thomas Elaine C, Merino-Trigo Ana, Teasdale Rohan D, Gleeson Paul A", "reference": { "type": "PubMed", "id": "12757749", "url": "https://pubmed.ncbi.nlm.nih.gov/12757749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04491-1", "protein_name": "Protein transport protein SEC13", "gene_name": "SEC13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q04491", "url": "https://www.uniprot.org/uniprotkb/Q04491" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12757749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sec31 encodes an essential component of the COPII coat required for transport vesicle budding from the endoplasmic reticulum.", "journal": "Mol. 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Cell", "date": "1997", "authors": "Salama N R, Chuang J S, Schekman R W", "reference": { "type": "PubMed", "id": "9190202", "url": "https://pubmed.ncbi.nlm.nih.gov/9190202" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04491-1", "protein_name": "Protein transport protein SEC13", "gene_name": "SEC13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38968-1", "protein_name": "Protein transport protein SEC31", "gene_name": "SEC31", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q04491", "url": "https://www.uniprot.org/uniprotkb/Q04491" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9190202", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol. Chem.", "date": "1997", "authors": "Shaywitz D A, Espenshade P J, Gimeno R E, Kaiser C A", "reference": { "type": "PubMed", "id": "9325247", "url": "https://pubmed.ncbi.nlm.nih.gov/9325247" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04491-1", "protein_name": "Protein transport protein SEC13", "gene_name": "SEC13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38968-1", "protein_name": "Protein transport protein SEC31", "gene_name": "SEC31", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40482-1", "protein_name": "Protein transport protein SEC24", "gene_name": "SEC24", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48415-1", "protein_name": "COPII coat assembly protein SEC16", "gene_name": "SEC16", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15303-1", "protein_name": "Protein transport protein SEC23", "gene_name": "SEC23", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Control of amino acid permease sorting in the late secretory pathway of Saccharomyces cerevisiae by SEC13, LST4, LST7 and LST8.", "journal": "Genetics", "date": "1997", "authors": "Roberg KJ, Bickel S, Rowley N, Kaiser CA", "reference": { "type": "PubMed", "id": "9409822", "url": "https://pubmed.ncbi.nlm.nih.gov/9409822" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04491-1", "protein_name": "Protein transport protein SEC13", "gene_name": "SEC13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41318-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "LST8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34239-1", "protein_name": "Protein LST4", "gene_name": "LST4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53237-1", "protein_name": "Protein LST7", "gene_name": "LST7", "tax_name": "Baker's yeast" } ], "species": [ 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Cell Biol.", "date": "2001", "authors": "Seol J H, Shevchenko A, Shevchenko A, Deshaies R J", "reference": { "type": "PubMed", "id": "11283612", "url": "https://pubmed.ncbi.nlm.nih.gov/11283612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04511-1", "protein_name": "Ubiquitin ligase complex F-box protein UFO1", "gene_name": "UFO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05947-1", "protein_name": "F-box protein UCC1", "gene_name": "UCC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06479-1", "protein_name": "F-box protein YLR352W", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12347-1", "protein_name": "F-box protein HRT3", "gene_name": "HRT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32610-1", "protein_name": "V-type proton ATPase subunit D", "gene_name": "VMA8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12395-1", "protein_name": "Defective in cullin 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"APC5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12440-1", "protein_name": "Anaphase-promoting complex subunit 2", "gene_name": "APC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12157-1", "protein_name": "Anaphase-promoting complex subunit 11", "gene_name": "APC11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12107-1", "protein_name": "Anaphase-promoting complex subunit 9", "gene_name": "APC9", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q04601", "url": "https://www.uniprot.org/uniprotkb/Q04601" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9469814", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteins in the early Golgi compartment of Saccharomyces cerevisiae immunoisolated by Sed5p.", "journal": "FEBS Lett.", "date": "2000", "authors": "Cho J H, Noda Y, Yoda K", "reference": { "type": "PubMed", "id": "10713261", "url": "https://pubmed.ncbi.nlm.nih.gov/10713261" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04651-1", "protein_name": "ER-derived vesicles protein 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"reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10713261", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"Biosci. Biotechnol. Biochem.", "date": "2001", "authors": "Cho J H, Noda Y, Adachi H, Yoda K", "reference": { "type": "PubMed", "id": "11758914", "url": "https://pubmed.ncbi.nlm.nih.gov/11758914" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04651-1", "protein_name": "ER-derived vesicles protein ERV41", "gene_name": "ERV41", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39727-1", "protein_name": "ER-derived vesicles protein ERV46", "gene_name": "ERV46", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q04651", "url": "https://www.uniprot.org/uniprotkb/Q04651" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11758914", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Erv41p-Erv46p complex: multiple export signals are required in trans for COPII-dependent transport from the ER.", "journal": "The EMBO journal", "date": "2002-11-15", "authors": "Otte Stefan, Barlowe Charles", "reference": { "type": "PubMed", "id": "12426381", "url": "https://pubmed.ncbi.nlm.nih.gov/12426381" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04651-1", "protein_name": "ER-derived vesicles protein ERV41", "gene_name": "ERV41", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39727-1", "protein_name": "ER-derived vesicles protein ERV46", "gene_name": "ERV46", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q04651", "url": "https://www.uniprot.org/uniprotkb/Q04651" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12426381", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Immunoisolation of the yeast Golgi subcompartments and characterization of a novel membrane protein, Svp26, discovered in the Sed5-containing compartments.", "journal": "Mol. Cell. Biol.", "date": "2005", "authors": "Inadome Hironori, Noda Yoichi, Adachi Hiroyuki, Yoda Koji", "reference": { "type": "PubMed", "id": "16107716", "url": "https://pubmed.ncbi.nlm.nih.gov/16107716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04651-1", "protein_name": "ER-derived vesicles protein ERV41", "gene_name": "ERV41", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07549-1", "protein_name": "Protein SNA4", "gene_name": "SNA4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38069-1", "protein_name": "Alpha-1,2-mannosyltransferase MNN2", "gene_name": "MNN2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38130-1", "protein_name": "Probable mannosyltransferase KTR3", "gene_name": "KTR3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38736-1", "protein_name": "Golgi SNAP receptor complex member 1", "gene_name": "GOS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38869-1", "protein_name": "Protein SVP26", "gene_name": "SVP26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39727-1", "protein_name": "ER-derived vesicles protein ERV46", "gene_name": "ERV46", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54837-1", "protein_name": "Endoplasmic reticulum vesicle protein 25", "gene_name": "ERV25", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32857-1", "protein_name": "Membrane protein PTM1", "gene_name": "PTM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38962-1", "protein_name": "Golgi apparatus membrane protein TVP23", "gene_name": "TVP23", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40531-1", "protein_name": "Protein GVP36", "gene_name": "GVP36", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03860-1", "protein_name": "Golgi apparatus membrane protein TVP15", "gene_name": "TVP15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04767-1", "protein_name": "Golgi apparatus membrane protein TVP18", "gene_name": "TVP18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12096-1", "protein_name": "Glucose N-acetyltransferase 1", "gene_name": "GNT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20606-1", "protein_name": "Small COPII coat GTPase SAR1", "gene_name": "SAR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53845-1", "protein_name": "Protein transport protein YIF1", "gene_name": "YIF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36164-1", "protein_name": "Golgi apparatus membrane protein TVP38", "gene_name": "TVP38", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q04651", "url": "https://www.uniprot.org/uniprotkb/Q04651" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16107716", 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Mol. Biol.", "date": "2013", "authors": "Biterova Ekaterina I, Sv\u00e4rd Maria, Possner Dominik D D, Guy Jodie E", "reference": { "type": "PubMed", "id": "23524136", "url": "https://pubmed.ncbi.nlm.nih.gov/23524136" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04651-1", "protein_name": "ER-derived vesicles protein ERV41", "gene_name": "ERV41", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q04651", "url": "https://www.uniprot.org/uniprotkb/Q04651" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.23524136", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Partial purification of the yeast U2 snRNP reveals a novel yeast pre-mRNA splicing factor required for pre-spliceosome assembly.", "journal": "The EMBO journal", "date": "1999-06-15", "authors": "Caspary F, Shevchenko A, Wilm M, S\u00e9raphin B", "reference": { "type": "PubMed", "id": "10369685", "url": "https://pubmed.ncbi.nlm.nih.gov/10369685" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04693-1", "protein_name": "Pre-mRNA-splicing 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of two novel TAF subunits of the yeast Saccharomyces cerevisiae TFIID complex.", "journal": "The Journal of biological chemistry", "date": "2000-05-05", "authors": "Sanders S L, Weil P A", "reference": { "type": "PubMed", "id": "10788514", "url": "https://pubmed.ncbi.nlm.nih.gov/10788514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", 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"tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23255-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35189-1", "protein_name": "Transcription initiation factor TFIID subunit 14", "gene_name": "TAF14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38129-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF5", "gene_name": "TAF5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46677-1", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11747-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04226-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10788514", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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subunit 4", "gene_name": "TAF4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03750-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12297-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11238921", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The histone fold is a key structural motif of transcription factor TFIID.", "journal": "Trends Biochem. Sci.", "date": "2001", "authors": "Gangloff Y G, Romier C, Thuault S, Werten S, Davidson I", "reference": { "type": "PubMed", "id": "11295558", "url": "https://pubmed.ncbi.nlm.nih.gov/11295558" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50105-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03750-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12297-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11747-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04226-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11295558", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A histone fold TAF octamer within the yeast TFIID transcriptional coactivator.", "journal": "Nat. Struct. Biol.", "date": "2001", "authors": "Selleck W, Howley R, Fang Q, Podolny V, Fried M G, Buratowski S, Tan S", "reference": { "type": "PubMed", "id": "11473260", "url": "https://pubmed.ncbi.nlm.nih.gov/11473260" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50105-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11473260", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping histone fold TAFs within yeast TFIID.", "journal": "EMBO J.", "date": "2002", "authors": "Leurent Claire, Sanders Steven, Ruhlmann Christine, Mallouh V\u00e9ronique, Weil P Anthony, Kirschner Doris B, Tora Laszlo, Schultz Patrick", "reference": { "type": "PubMed", "id": "12093743", "url": "https://pubmed.ncbi.nlm.nih.gov/12093743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50105-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03750-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12297-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05021-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P13393-1", "protein_name": "TATA-box-binding protein", "gene_name": "SPT15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23255-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35189-1", "protein_name": "Transcription initiation factor TFIID subunit 14", "gene_name": "TAF14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38129-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF5", "gene_name": "TAF5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46677-1", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11747-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04226-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12093743", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of Saccharomyces cerevisiae TFIID.", "journal": "Molecular and cellular biology", "date": "2002-08", "authors": "Sanders Steven L, Garbett Krassimira A, Weil P Anthony", "reference": { "type": "PubMed", "id": "12138208", "url": "https://pubmed.ncbi.nlm.nih.gov/12138208" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50105-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03750-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12297-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05021-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P13393-1", "protein_name": "TATA-box-binding protein", "gene_name": "SPT15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23255-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35189-1", "protein_name": "Transcription initiation factor TFIID subunit 14", "gene_name": "TAF14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38129-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF5", "gene_name": "TAF5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46677-1", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11747-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04226-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12138208", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multi-protein complexes in eukaryotic gene transcription.", "journal": "Plant molecular biology", "date": "2002-12", "authors": "Martinez Ernest", "reference": { "type": "PubMed", "id": "12516863", "url": "https://pubmed.ncbi.nlm.nih.gov/12516863" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50105-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03750-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12297-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05021-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P13393-1", "protein_name": "TATA-box-binding protein", "gene_name": "SPT15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23255-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35189-1", "protein_name": "Transcription initiation factor TFIID subunit 14", "gene_name": "TAF14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38129-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF5", "gene_name": "TAF5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46677-1", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11747-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04226-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12516863", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly.", "journal": "The EMBO journal", "date": "2003-07-01", "authors": "Shen Wu-Cheng, Bhaumik Sukesh R, Causton Helen C, Simon Itamar, Zhu Xiaochun, Jennings Ezra G, Wang Tseng-Hsing, Young Richard A, Green Michael R", "reference": { "type": "PubMed", "id": "12840001", "url": "https://pubmed.ncbi.nlm.nih.gov/12840001" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12840001", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Purification of active TFIID from Saccharomyces cerevisiae. 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Syst. Biol.", "date": "2011", "authors": "Lee Kenneth K, Sardiu Mihaela E, Swanson Selene K, Gilmore Joshua M, Torok Michael, Grant Patrick A, Florens Laurence, Workman Jerry L, Washburn Michael P", "reference": { "type": "PubMed", "id": "21734642", "url": "https://pubmed.ncbi.nlm.nih.gov/21734642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25649-1", "protein_name": "ADA histone acetyltransferase complex component 2", "gene_name": "AHC2", "tax_name": 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[] } ] }, { "title": "The histone H3-like TAF is broadly required for transcription in yeast.", "journal": "Molecular cell", "date": "1998-11", "authors": "Moqtaderi Z, Keaveney M, Struhl K", "reference": { "type": "PubMed", "id": "9844639", "url": "https://pubmed.ncbi.nlm.nih.gov/9844639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q05027", "url": "https://www.uniprot.org/uniprotkb/Q05027" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], 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Biol. 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Molecular and enzymatic properties of the homogeneous enzyme from baker's yeast.", "journal": "Biochemistry", "date": "1986-06-17", "authors": "Natalini P, Ruggieri S, Raffaelli N, Magni G", "reference": { "type": "PubMed", "id": "3013296", "url": "https://pubmed.ncbi.nlm.nih.gov/3013296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06178-1", "protein_name": "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1", "gene_name": "NMA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q06178", "url": "https://www.uniprot.org/uniprotkb/Q06178" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.3013296", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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cerevisiae by tethering of a novel Sir2-interacting protein, Esc8.", "journal": "Genetics", "date": "2002-10", "authors": "Cuperus Guido, Shore David", "reference": { "type": "PubMed", "id": "12399377", "url": "https://pubmed.ncbi.nlm.nih.gov/12399377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06340-1", "protein_name": "Protein ESC2", "gene_name": "ESC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08119-1", "protein_name": "Protein ESC8", "gene_name": "ESC8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06700-1", "protein_name": "NAD-dependent histone deacetylase SIR2", "gene_name": "SIR2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q06340", "url": "https://www.uniprot.org/uniprotkb/Q06340" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12399377", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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B, Eisenhaber F", "reference": { "type": "PubMed", "id": "15698469", "url": "https://pubmed.ncbi.nlm.nih.gov/15698469" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06340-1", "protein_name": "Protein ESC2", "gene_name": "ESC2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q06340", "url": "https://www.uniprot.org/uniprotkb/Q06340" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15698469", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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Biol. Cell", "date": "2005", "authors": "Yorimitsu Tomohiro, Klionsky Daniel J", "reference": { "type": "PubMed", "id": "15659643", "url": "https://pubmed.ncbi.nlm.nih.gov/15659643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06410-1", "protein_name": "Autophagy-related protein 17", "gene_name": "ATG17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07528-1", "protein_name": "Autophagy-related protein 20", "gene_name": "ATG20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12527-1", "protein_name": "Autophagy-related protein 11", "gene_name": "ATG11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35193-1", "protein_name": "Autophagy-related protein 19", "gene_name": "ATG19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38182-1", "protein_name": "Autophagy-related protein 8", "gene_name": "ATG8", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, 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[] } ] }, { "title": "Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy.", "journal": "Molecular biology of the cell", "date": "2005", "authors": "Kabeya Y, Kamada Y, Baba M, Takikawa H, Sasaki M, Ohsumi Y", "reference": { "type": "PubMed", "id": "15743910", "url": "https://pubmed.ncbi.nlm.nih.gov/15743910" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06410-1", "protein_name": "Autophagy-related protein 17", "gene_name": "ATG17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06628-1", "protein_name": "Autophagy-related protein 13", "gene_name": "ATG13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q06410", "url": "https://www.uniprot.org/uniprotkb/Q06410" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cis1/Atg31 is required for autophagosome formation in Saccharomyces cerevisiae.", "journal": "Biochemical and biophysical research communications", "date": "2007-05-04", "authors": "Kabeya Yukiko, Kawamata Tomoko, Suzuki Kuninori, Ohsumi Yoshinori", "reference": { "type": "PubMed", "id": "17362880", "url": "https://pubmed.ncbi.nlm.nih.gov/17362880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06410-1", "protein_name": "Autophagy-related protein 17", "gene_name": "ATG17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12421-1", "protein_name": "Autophagy-related protein 31", "gene_name": "ATG31", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q06410", "url": "https://www.uniprot.org/uniprotkb/Q06410" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", 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Cell Biol.", "date": "2010", "authors": "Yen Wei-Lien, Shintani Takahiro, Nair Usha, Cao Yang, Richardson Brian C, Li Zhijian, Hughson Frederick M, Baba Misuzu, Klionsky Daniel J", "reference": { "type": "PubMed", "id": "20065092", "url": "https://pubmed.ncbi.nlm.nih.gov/20065092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06410-1", "protein_name": "Autophagy-related protein 17", "gene_name": "ATG17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12142-1", "protein_name": "Autophagy-related protein 9", "gene_name": "ATG9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38316-1", "protein_name": "Ubiquitin-like protein ATG12", "gene_name": "ATG12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38182-1", "protein_name": "Autophagy-related protein 8", "gene_name": "ATG8", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Autophosphorylation within the Atg1 activation loop is required for both kinase activity and the induction of autophagy in Saccharomyces cerevisiae.", "journal": "Genetics", "date": "2010-07", "authors": "Yeh Yuh-Ying, Wrasman Kristie, Herman Paul K", "reference": { "type": "PubMed", "id": "20439775", "url": "https://pubmed.ncbi.nlm.nih.gov/20439775" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06410-1", "protein_name": "Autophagy-related protein 17", "gene_name": "ATG17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06628-1", "protein_name": "Autophagy-related protein 13", "gene_name": "ATG13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53104-1", "protein_name": "Serine/threonine-protein kinase ATG1", "gene_name": "ATG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q06410", "url": "https://www.uniprot.org/uniprotkb/Q06410" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 226, "end_pos": 226, "sequence_org": "T", "sequence_mut": "E", "comment": "Leads to constitutive autophosphorylation activity.", "evidence": [ { "database": "UniProtKB", "id": "P53104", "url": "https://www.uniprot.org/uniprotkb/P53104" }, { "database": "PubMed", "id": "20439775", "url": "https://pubmed.ncbi.nlm.nih.gov/20439775" } ], "uniprot_canonical_ac": "P53104-1" } ], "phosphorylation": [ { "start_pos": 226, "end_pos": 226, "kinase_uniprot_canonical_ac": "P53104-1", "kinase_gene_name": "ATG1", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "P53104", "url": "https://www.uniprot.org/uniprotkb/P53104" }, { "database": "iPTMnet", "id": "P53104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53104" }, { "database": "PubMed", "id": 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"abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sphingolipid synthesis is involved in autophagy in Saccharomyces cerevisiae.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2011", "authors": "Yamagata Maki, Obara Keisuke, Kihara Akio", "reference": { "type": "PubMed", "id": "21703229", "url": "https://pubmed.ncbi.nlm.nih.gov/21703229" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q06410-1", "protein_name": "Autophagy-related protein 17", "gene_name": "ATG17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12380-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38270-1", "protein_name": "Autophagy-related protein 14", "gene_name": "ATG14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38316-1", "protein_name": "Ubiquitin-like protein ATG12", "gene_name": "ATG12", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q06410", "url": "https://www.uniprot.org/uniprotkb/Q06410" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.21703229", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]