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Chem.", "date": "1999", "authors": "Jamison McDaniels C P, Jensen L T, Srinivasan C, Winge D R, Tullius T D", "reference": { "type": "PubMed", "id": "10480908", "url": "https://pubmed.ncbi.nlm.nih.gov/10480908" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10480908", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the copper regulon in Saccharomyces cerevisiae by DNA microarrays.", "journal": "J. Biol. Chem.", "date": "2000", "authors": "Gross C, Kelleher M, Iyer V R, Brown P O, Winge D R", "reference": { "type": "PubMed", "id": "10922376", "url": "https://pubmed.ncbi.nlm.nih.gov/10922376" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40893-1", "protein_name": "Regulation of enolase protein 1", "gene_name": "REE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05790-1", "protein_name": "Probable glycosidase CRR1", "gene_name": "CRR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10922376", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Antioxidant functions required for insusceptibility of Saccharomyces cerevisiae to tetracycline antibiotics.", "journal": "Antimicrob. Agents Chemother.", "date": "2001", "authors": "Angrave F E, Avery S V", "reference": { "type": "PubMed", "id": "11557497", "url": "https://pubmed.ncbi.nlm.nih.gov/11557497" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11557497", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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cuprous-thiolate polynuclear cluster: sub-femtomolar Cu(I) affinity of three proteins involved in copper trafficking.", "journal": "Journal of the American Chemical Society", "date": "2004-03-17", "authors": "Xiao Zhiguang, Loughlin Fionna, George Graham N, Howlett Geoffrey J, Wedd Anthony G", "reference": { "type": "PubMed", "id": "15012137", "url": "https://pubmed.ncbi.nlm.nih.gov/15012137" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15012137", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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expression of a yeast copper transport gene.", "journal": "Genes & development", "date": "1996-08-01", "authors": "Knight S A, Labb\u00e9 S, Kwon L F, Kosman D J, Thiele D J", "reference": { "type": "PubMed", "id": "8756349", "url": "https://pubmed.ncbi.nlm.nih.gov/8756349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06686-1", "protein_name": "Copper transport protein CTR3", "gene_name": "CTR3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8756349", "abstract": "", "glycosylation": [], 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Chem.", "date": "1997", "authors": "Labb\u00e9 S, Zhu Z, Thiele D J", "reference": { "type": "PubMed", "id": "9188496", "url": "https://pubmed.ncbi.nlm.nih.gov/9188496" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9188496", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Homeostatic regulation of copper uptake in yeast via direct binding of MAC1 protein to upstream regulatory sequences of FRE1 and CTR1.", "journal": "J. 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Chem.", "date": "1997", "authors": "Yamaguchi-Iwai Y, Serpe M, Haile D, Yang W, Kosman D J, Klausner R D, Dancis A", "reference": { "type": "PubMed", "id": "9211922", "url": "https://pubmed.ncbi.nlm.nih.gov/9211922" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9211922", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamic regulation of copper uptake and detoxification genes in Saccharomyces cerevisiae.", "journal": "Mol. 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Biol.", "date": "1998", "authors": "Pe\u00f1a M M, Koch K A, Thiele D J", "reference": { "type": "PubMed", "id": "9599102", "url": "https://pubmed.ncbi.nlm.nih.gov/9599102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49573-1", "protein_name": "Copper transport protein CTR1", "gene_name": "CTR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49573", "url": "https://www.uniprot.org/uniprotkb/P49573" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9599102", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping of the DNA binding domain of the copper-responsive transcription factor Mac1 from Saccharomyces cerevisiae.", "journal": "J. 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Cell. Biol.", "date": "1988", "authors": "Lucioli A, Presutti C, Ciafr\u00e8 S, Caffarelli E, Fragapane P, Bozzoni I", "reference": { "type": "PubMed", "id": "3062369", "url": "https://pubmed.ncbi.nlm.nih.gov/3062369" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49626-1", "protein_name": "Large ribosomal subunit protein uL4B", "gene_name": "RPL4B", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49626", "url": "https://www.uniprot.org/uniprotkb/P49626" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.3062369", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"The Journal of cell biology", "date": "2000-02-21", "authors": "Rout M P, Aitchison J D, Suprapto A, Hjertaas K, Zhao Y, Chait B T", "reference": { "type": "PubMed", "id": "10684247", "url": "https://pubmed.ncbi.nlm.nih.gov/10684247" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49686-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P52593-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53011-1", "protein_name": "Nucleoporin SEH1", "gene_name": "SEH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02629-1", "protein_name": "Nucleoporin NUP100/NSP100", "gene_name": "NUP100", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02630-1", "protein_name": "Nucleoporin NUP116/NSP116", "gene_name": "NUP116", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04491-1", "protein_name": 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"glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12604785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Peering through the pore: nuclear pore complex structure, assembly, and function.", 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Cell", "date": "2003", "authors": "Suntharalingam Mythili, Wente Susan R", "reference": { "type": "PubMed", "id": "12791264", "url": "https://pubmed.ncbi.nlm.nih.gov/12791264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49686-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P52593-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53011-1", "protein_name": "Nucleoporin SEH1", "gene_name": "SEH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02629-1", "protein_name": "Nucleoporin NUP100/NSP100", "gene_name": "NUP100", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02630-1", "protein_name": "Nucleoporin NUP116/NSP116", "gene_name": "NUP116", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04491-1", "protein_name": "Protein transport protein SEC13", "gene_name": "SEC13", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1999", "authors": "Stevens S W, Abelson J", "reference": { "type": "PubMed", "id": "10377396", "url": "https://pubmed.ncbi.nlm.nih.gov/10377396" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49704-1", "protein_name": "Pre-mRNA-processing factor 31", "gene_name": "PRP31", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12368-1", "protein_name": "23 kDa U4/U6.U5 small nuclear ribonucleoprotein component", "gene_name": "SNU23", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00723-1", "protein_name": "Pre-mRNA-splicing factor 38", "gene_name": "PRP38", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12420-1", "protein_name": "66 kDa U4/U6.U5 small nuclear ribonucleoprotein component", "gene_name": "SNU66", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39990-1", "protein_name": "13 kDa ribonucleoprotein-associated protein", "gene_name": "SNU13", "tax_name": "Baker's yeast" } ], "species": [ 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"common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11287619", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of RFC(Ctf18p, Ctf8p, Dcc1p): an alternative RFC complex required for sister chromatid cohesion in S. cerevisiae.", "journal": "Molecular cell", "date": "2001", "authors": "Mayer ML, Gygi SP, Aebersold R, Hieter P", "reference": { "type": "PubMed", "id": "11389843", "url": "https://pubmed.ncbi.nlm.nih.gov/11389843" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49956-1", "protein_name": "Chromosome transmission fidelity protein 18", "gene_name": "CTF18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38251-1", "protein_name": "Replication factor C subunit 5", "gene_name": "RFC5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38629-1", "protein_name": "Replication factor C subunit 3", "gene_name": "RFC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40339-1", "protein_name": "Replication factor C subunit 4", "gene_name": "RFC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40348-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanical link between cohesion establishment and DNA replication: Ctf7p/Eco1p, a cohesion establishment factor, associates with three different replication factor C complexes.", "journal": "Mol. 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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both required for the formation of 2-methylguanosine at position 10 in yeast tRNA.", "journal": "Mol. Cell. Biol.", "date": "2005", "authors": "Purushothaman SK, Bujnicki JM, Grosjean H, Lapeyre B", "reference": { "type": "PubMed", "id": "15899842", "url": "https://pubmed.ncbi.nlm.nih.gov/15899842" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49957-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase", "gene_name": "TRM9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03920-1", "protein_name": "eRF1 methyltransferase catalytic subunit MTQ2", "gene_name": "MTQ2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12463-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase", "gene_name": "TRM11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38999-1", "protein_name": "Saccharopine dehydrogenase [NADP(+), L-glutamate-forming]", "gene_name": "LYS9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53738-1", "protein_name": "Multifunctional methyltransferase subunit TRM112", "gene_name": "TRM112", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49957", "url": "https://www.uniprot.org/uniprotkb/P49957" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 215, "end_pos": 215, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes activity.", "evidence": [ { "database": "UniProtKB", "id": "Q12463", "url": "https://www.uniprot.org/uniprotkb/Q12463" }, { "database": "PubMed", "id": "15899842", "url": "https://pubmed.ncbi.nlm.nih.gov/15899842" } ], "uniprot_canonical_ac": "Q12463-1" }, { "start_pos": 291, "end_pos": 291, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes activity.", "evidence": [ { "database": "UniProtKB", "id": "Q12463", "url": "https://www.uniprot.org/uniprotkb/Q12463" }, { "database": "PubMed", "id": "15899842", "url": "https://pubmed.ncbi.nlm.nih.gov/15899842" } ], "uniprot_canonical_ac": "Q12463-1" } ], "record_id": "pubmed.15899842", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and interactions of the first three RNA recognition motifs of splicing factor prp24.", "journal": "J. 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D Struct. 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence for a Prp24 binding site in U6 snRNA and in a putative intermediate in the annealing of U6 and U4 snRNAs.", "journal": "The EMBO journal", "date": "1995-02-15", "authors": "Jandrositz A, Guthrie C", "reference": { "type": "PubMed", "id": "7882985", "url": "https://pubmed.ncbi.nlm.nih.gov/7882985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49960-1", "protein_name": "U4/U6 snRNA-associated-splicing factor PRP24", "gene_name": "PRP24", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49960", "url": "https://www.uniprot.org/uniprotkb/P49960" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], 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"reference": { "type": "PubMed", "id": "9452384", "url": "https://pubmed.ncbi.nlm.nih.gov/9452384" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49960-1", "protein_name": "U4/U6 snRNA-associated-splicing factor PRP24", "gene_name": "PRP24", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P49960", "url": "https://www.uniprot.org/uniprotkb/P49960" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9452384", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"P50082-1", "protein_name": "Meiosis-specific APC/C activator protein AMA1", "gene_name": "AMA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50085-1", "protein_name": "Prohibitin-2", "gene_name": "PHB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50087-1", "protein_name": "MICOS subunit MIC26", "gene_name": "MIC26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50090-1", "protein_name": "Kelch repeat-containing protein 2", "gene_name": "KEL2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32566-1", "protein_name": "Cell wall assembly regulator SMI1", "gene_name": "SMI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50086-1", "protein_name": "Probable 26S proteasome regulatory subunit p28", "gene_name": "NAS6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50084-1", "protein_name": "Protein BNS1", "gene_name": "BNS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50088-1", "protein_name": "Stationary phase gene 1 protein", "gene_name": "SPG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50089-1", "protein_name": "Uncharacterized protein YGR237C", "gene_name": "G8581", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53307-1", "protein_name": "Uncharacterized protein YGR219W", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39676-1", "protein_name": "Flavohemoprotein", "gene_name": "YHB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50077-1", "protein_name": "Calcium-channel protein CCH1", "gene_name": "CCH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50078-1", "protein_name": "Protein TOS2", "gene_name": "TOS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50080-1", "protein_name": "Azole resistance protein 1", "gene_name": "AZR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16861-1", "protein_name": "ATP-dependent 6-phosphofructokinase subunit alpha", "gene_name": "PFK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P17442-1", "protein_name": "Phosphate system positive regulatory protein PHO81", "gene_name": "PHO81", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50091-1", "protein_name": "Peroxisomal protein PEX21", "gene_name": "PEX21", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10834-1", "protein_name": "Protein PET54", "gene_name": "PET54", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P31334-1", "protein_name": "Large ribosomal subunit protein uL3m", "gene_name": "MRPL9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50076-1", "protein_name": "Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase", "gene_name": "DIE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P30822-1", "protein_name": "Exportin-1", "gene_name": "CRM1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50079", "url": "https://www.uniprot.org/uniprotkb/P50079" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8701610", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast.", "journal": "Nucleic Acids Res.", "date": "2000", "authors": "Davis C A, Grate L, Spingola M, Ares M", "reference": { "type": "PubMed", "id": "10734188", "url": "https://pubmed.ncbi.nlm.nih.gov/10734188" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50082-1", "protein_name": "Meiosis-specific APC/C activator protein AMA1", "gene_name": "AMA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53541-1", "protein_name": "Putative meiotic phospholipase SPO1", "gene_name": "SPO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32363-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit", "gene_name": "SPT14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32454-1", "protein_name": "Aminopeptidase 2, mitochondrial", "gene_name": "APE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36108-1", "protein_name": "DOA4-independent degradation protein 4", "gene_name": "DID4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39016-1", "protein_name": "Suppressor protein MPT5", "gene_name": "MPT5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38126-1", "protein_name": "Pachytene checkpoint protein 2", "gene_name": "PCH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08218-1", "protein_name": "Outer spore wall protein LDS2", "gene_name": "LDS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38248-1", "protein_name": "Cell wall protein ECM33", "gene_name": "ECM33", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06346-1", "protein_name": "Inositol phosphorylceramide synthase regulatory subunit KEI1", "gene_name": "KEI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12255-1", "protein_name": "Vacuolar v-SNARE NYV1", "gene_name": "NYV1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53200-1", "protein_name": "Protein-lysine N-methyltransferase EFM5", "gene_name": "EFM5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05789-1", "protein_name": "PtdIns3K complex I subunit atg38", "gene_name": "ATG38", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43603-1", "protein_name": "LAS seventeen-binding protein 3", "gene_name": "LSB3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50082", "url": "https://www.uniprot.org/uniprotkb/P50082" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10734188", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50087", "url": "https://www.uniprot.org/uniprotkb/P50087" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.21944719", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"2011", "authors": "Harner Max, K\u00f6rner Christian, Walther Dirk, Mokranjac Dejana, Kaesmacher Johannes, Welsch Ulrich, Griffith Janice, Mann Matthias, Reggiori Fulvio, Neupert Walter", "reference": { "type": "PubMed", "id": "22009199", "url": "https://pubmed.ncbi.nlm.nih.gov/22009199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50087-1", "protein_name": "MICOS subunit MIC26", "gene_name": "MIC26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50945-1", "protein_name": "MICOS complex subunit MIC27", "gene_name": "MIC27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36112-1", "protein_name": "MICOS complex subunit MIC60", "gene_name": "MIC60", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43594-1", "protein_name": "MICOS complex subunit MIC19", "gene_name": "MIC19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q96VH5-1", "protein_name": "MICOS complex subunit MIC10", "gene_name": "MIC10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38341-1", "protein_name": "MICOS complex subunit MIC12", "gene_name": "MIC12", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50087", "url": "https://www.uniprot.org/uniprotkb/P50087" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.22009199", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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Cell Biol.", "date": "1998", "authors": "Philips J, Herskowitz I", "reference": { "type": "PubMed", "id": "9786949", "url": "https://pubmed.ncbi.nlm.nih.gov/9786949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50090-1", "protein_name": "Kelch repeat-containing protein 2", "gene_name": "KEL2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38853-1", "protein_name": "Kelch repeat-containing protein 1", "gene_name": "KEL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50090", "url": "https://www.uniprot.org/uniprotkb/P50090" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9786949", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE.", "journal": "Nucleic Acids Res.", "date": "2005", "authors": "Zhang Zhihong, Dietrich Fred S", "reference": { "type": "PubMed", "id": "15905473", "url": "https://pubmed.ncbi.nlm.nih.gov/15905473" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50094-1", "protein_name": "Inosine-5'-monophosphate dehydrogenase 4", "gene_name": "IMD4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06406-1", "protein_name": "LSM complex subunit LSM6", "gene_name": "LSM6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12440-1", "protein_name": "Anaphase-promoting complex subunit 2", "gene_name": "APC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36135-1", "protein_name": "Probable secreted beta-glucosidase UTH1", "gene_name": "UTH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23493-1", "protein_name": "Mitochondrial biogenesis regulation protein 1", "gene_name": "MBR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53848-1", "protein_name": "Folic acid synthesis protein FOL1", "gene_name": "FOL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04307-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC10", "gene_name": "RPC11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38626-1", "protein_name": "NADH-cytochrome b5 reductase 1", "gene_name": "CBR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40509-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "SEC28", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38858-1", "protein_name": "6-phosphogluconolactonase 3", "gene_name": "SOL3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39981-1", "protein_name": "Vacuolar amino acid transporter 2", "gene_name": "AVT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40019-1", "protein_name": "Histone H2A.Z-specific chaperone CHZ1", "gene_name": "CHZ1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40033-1", "protein_name": "Small ribosomal subunit protein bS18m", "gene_name": "RSM18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47051-1", "protein_name": "Putative lipoate-protein ligase A", "gene_name": "AIM22", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06200-1", "protein_name": "Protein ECM7", "gene_name": "ECM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06214-1", "protein_name": "WD repeat-containing protein JIP5", "gene_name": "JIP5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12000-1", "protein_name": "Translation machinery-associated protein 46", "gene_name": "TMA46", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12171-1", "protein_name": "Mitochondrial distribution and morphology protein 32", "gene_name": "MDM32", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12215-1", "protein_name": "Cell wall integrity and stress response component 3", "gene_name": "WSC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12455-1", "protein_name": "Spermine synthase SPE4", "gene_name": "SPE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32490-1", "protein_name": "MAP kinase kinase MKK1/SSP32", "gene_name": "MKK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06115-1", "protein_name": "Catalase T", "gene_name": "CTT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06244-1", "protein_name": "cAMP-dependent protein kinase type 1", "gene_name": "TPK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28789-1", "protein_name": "Porphobilinogen deaminase", "gene_name": "HEM3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50094", "url": "https://www.uniprot.org/uniprotkb/P50094" } ], "common_name": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dissection of the molecular basis of mycophenolate resistance in Saccharomyces cerevisiae.", "journal": "Yeast (Chichester, England)", "date": "2005-11", "authors": "Jenks M Harley, Reines Daniel", "reference": { "type": "PubMed", "id": "16278936", "url": "https://pubmed.ncbi.nlm.nih.gov/16278936" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50095-1", "protein_name": "Inosine-5'-monophosphate dehydrogenase 3", "gene_name": "IMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38697-1", "protein_name": "Inosine-5'-monophosphate dehydrogenase 2", "gene_name": "IMD2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50095", "url": "https://www.uniprot.org/uniprotkb/P50095" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 253, "end_pos": 253, "sequence_org": "A", "sequence_mut": "S", "comment": "Increases 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expanded lysine acetylation specificity of Gcn5 in native complexes.", "journal": "The Journal of biological chemistry", "date": "1999-02-26", "authors": "Grant P A, Eberharter A, John S, Cook R G, Turner B M, Workman J L", "reference": { "type": "PubMed", "id": "10026213", "url": "https://pubmed.ncbi.nlm.nih.gov/10026213" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50102-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 8", "gene_name": "UBP8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32657-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38811-1", "protein_name": "SAGA complex/NuA4 acetyltransferase complex subunit TRA1", "gene_name": "TRA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03330-1", "protein_name": "Histone acetyltransferase GCN5", "gene_name": "GCN5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02336-1", "protein_name": "SAGA complex subunit ADA2", "gene_name": "ADA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF12", "gene_name": "TAF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12433-1", "protein_name": "Protein AHC1", "gene_name": "AHC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32494-1", "protein_name": "SAGA complex subunit NGG1", "gene_name": "NGG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38129-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF5", 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[] } ] }, { "title": "Redundant roles for the TFIID and SAGA complexes in global transcription.", "journal": "Nature", "date": "2000-06-08", "authors": "Lee T I, Causton H C, Holstege F C, Shen W C, Hannett N, Jennings E G, Winston F, Green M R, Young R A", "reference": { "type": "PubMed", "id": "10864329", "url": "https://pubmed.ncbi.nlm.nih.gov/10864329" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50102-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 8", "gene_name": "UBP8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38811-1", "protein_name": "SAGA complex/NuA4 acetyltransferase complex subunit TRA1", "gene_name": 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry.", "journal": "Mol. Cell. Biol.", "date": "2002", "authors": "Sanders Steven L, Jennings Jennifer, Canutescu Adrian, Link Andrew J, Weil P Anthony", "reference": { "type": "PubMed", "id": "12052880", "url": "https://pubmed.ncbi.nlm.nih.gov/12052880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50102-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 8", "gene_name": "UBP8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53165-1", "protein_name": "SAGA complex subunit SGF73", "gene_name": "SGF73", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53040-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF6", "gene_name": "TAF6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03761-1", "protein_name": "SAGA complex/transcription factor TFIID 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The novel SLIK histone acetyltransferase complex functions in the yeast retrograde response pathway.", "journal": "Molecular and cellular biology", "date": "2002-12", "authors": "Pray-Grant Marilyn G, Schieltz David, McMahon Stacey J, Wood Jennifer M, Kennedy Erin L, Cook Richard G, Workman Jerry L, Yates John R, Grant Patrick A", "reference": { "type": "PubMed", "id": "12446794", "url": "https://pubmed.ncbi.nlm.nih.gov/12446794" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50102-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 8", "gene_name": "UBP8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05027-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF9", "gene_name": "TAF9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32657-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38811-1", "protein_name": "SAGA complex/NuA4 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"Baker's yeast" }, { "uniprot_canonical_ac": "P06844-1", "protein_name": "SAGA complex subunit SPT3", "gene_name": "SPT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50875-1", "protein_name": "SAGA complex subunit SPT20", "gene_name": "SPT20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12030-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF10", "gene_name": "TAF10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12060-1", "protein_name": "SAGA complex subunit HFI1", "gene_name": "HFI1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50102", "url": "https://www.uniprot.org/uniprotkb/P50102" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12446794", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Pillus Lorraine, Shilatifard Ali, Osley Mary Ann, Berger Shelley L", "reference": { "type": "PubMed", "id": "14563679", "url": "https://pubmed.ncbi.nlm.nih.gov/14563679" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50102-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 8", "gene_name": "UBP8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02293-1", "protein_name": "Histone H2B.1", "gene_name": "HTB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02294-1", "protein_name": "Histone H2B.2", "gene_name": "HTB2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50102", "url": "https://www.uniprot.org/uniprotkb/P50102" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14563679", "abstract": "", "glycosylation": [], 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