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Friederike, Lorenzo-Orts Laura, Pribitzer Carina, Grishkovskaya Irina, Roehsner Josef, Chugunova Anastasia, Matzinger Manuel, Roitinger Elisabeth, Bela\u010di\u0107 Katarina, Kandolf Susanne, Lin Tzi-Yang, Mechtler Karl, Meinhart Anton, Haselbach David, Pauli Andrea", "reference": { "type": "PubMed", "id": "36653451", "url": "https://pubmed.ncbi.nlm.nih.gov/36653451" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P3J5-1", "protein_name": "Elongation factor 2b", "gene_name": "eef2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9I9N1-1", "protein_name": "Death-associated protein 1 homolog", "gene_name": "dap", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5XJA5-1", "protein_name": "Intracellular hyaluronan-binding protein 4", "gene_name": "habp4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NX89-1", "protein_name": "Eukaryotic translation initiation factor 5A-1", "gene_name": "eif5a", "tax_name": "Zebrafish" }, { 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Cell. Endocrinol.", "date": "2004", "authors": "Mindnich R, Deluca D, Adamski J", "reference": { "type": "PubMed", "id": "15026171", "url": "https://pubmed.ncbi.nlm.nih.gov/15026171" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P3L6-1", "protein_name": "Very-long-chain 3-oxoacyl-CoA reductase-A", "gene_name": "hsd17b12a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6QA33-1", "protein_name": "Very-long-chain 3-oxoacyl-CoA reductase-B", "gene_name": "hsd17b12b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QT23-1", "protein_name": "Retinol dehydrogenase", "gene_name": "rdh8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QUP2-1", "protein_name": "Estradiol 17-beta-dehydrogenase", "gene_name": "hsd17b1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6P3L6", "url": "https://www.uniprot.org/uniprotkb/Q6P3L6" } ], "common_name": "Zebrafish", 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"authors": "Wingert Rebecca A, Galloway Jenna L, Barut Bruce, Foott Helen, Fraenkel Paula, Axe Jennifer L, Weber Gerhard J, Dooley Kimberly, Davidson Alan J, Schmid Bettina, Schmidt Bettina, Paw Barry H, Shaw George C, Kingsley Paul, Palis James, Schubert Heidi, Chen Opal, Kaplan Jerry, Zon Leonard I,", "reference": { "type": "PubMed", "id": "16110529", "url": "https://pubmed.ncbi.nlm.nih.gov/16110529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PBM1-1", "protein_name": "Glutaredoxin-related protein 5, mitochondrial", "gene_name": "glrx5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86SX6-1", "protein_name": "Glutaredoxin-related protein 5, mitochondrial", "gene_name": "GLRX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80Y14-1", "protein_name": "Glutaredoxin-related protein 5, mitochondrial", "gene_name": "Glrx5", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PBM1", "url": "https://www.uniprot.org/uniprotkb/Q6PBM1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16110529", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Molecular cloning, expression, and functional characterization of zebrafish SULT1 sulfotransferases.", "journal": "European journal of biochemistry", "date": "2003-06", "authors": "Sugahara Takuya, Liu Chau-Ching, Pai T Govind, Collodi Paul, Suiko Masahito, Sakakibara Yoichi, Nishiyama Kazuo, Liu Ming-Cheh", "reference": { "type": "PubMed", "id": "12755695", "url": "https://pubmed.ncbi.nlm.nih.gov/12755695" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PH37-1", "protein_name": "Cytosolic sulfotransferase 1", "gene_name": "sult1st1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZUS4-1", "protein_name": "Cytosolic sulfotransferase 2", "gene_name": "sult1st2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PH37", "url": "https://www.uniprot.org/uniprotkb/Q6PH37" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12755695", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CHMP1A encodes an essential regulator of BMI1-INK4A in cerebellar development.", "journal": "Nat. Genet.", "date": "2012", "authors": "Mochida Ganeshwaran H, Ganesh Vijay S, de Michelena Maria I, Dias Hugo, Atabay Kutay D, Kathrein Katie L, Huang Hsuan-Ting, Hill R Sean, Felie Jillian M, Rakiec Daniel, Gleason Danielle, Hill Anthony D, Malik Athar N, Barry Brenda J, Partlow Jennifer N, Tan Wen-Hann, Glader Laurie J, Barkovich A James, Dobyns William B, Zon Leonard I, Walsh Christopher A", "reference": { "type": "PubMed", "id": "23023333", "url": "https://pubmed.ncbi.nlm.nih.gov/23023333" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PHF0-1", "protein_name": "Charged multivesicular body protein 1a", "gene_name": "chmp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9HD42-1", "protein_name": "Charged multivesicular body protein 1a", "gene_name": "CHMP1A", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PHF0", "url": "https://www.uniprot.org/uniprotkb/Q6PHF0" 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"The Journal of biological chemistry", "date": "2004-03-19", "authors": "Runko Alexander P, Sagerstr\u00f6m Charles G", "reference": { "type": "PubMed", "id": "14709556", "url": "https://pubmed.ncbi.nlm.nih.gov/14709556" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6UFS5-1", "protein_name": "Zinc finger protein 503", "gene_name": "znf503", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90ZE2-1", "protein_name": "Zinc finger protein 703", "gene_name": "znf703", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6UFS5", "url": "https://www.uniprot.org/uniprotkb/Q6UFS5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 61, "end_pos": 61, "sequence_org": "M", "sequence_mut": "G", "comment": "Abrogates initiation of translation of isoform 2.", "evidence": [ { "database": 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"nlz gene family is required for hindbrain patterning in the zebrafish.", "journal": "Developmental dynamics : an official publication of the American Association of Anatomists", "date": "2004-04", "authors": "Hoyle Jacqueline, Tang Yixin P, Wiellette Elizabeth L, Wardle Fiona C, Sive Hazel", "reference": { "type": "PubMed", "id": "15042707", "url": "https://pubmed.ncbi.nlm.nih.gov/15042707" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6UFS5-1", "protein_name": "Zinc finger protein 503", "gene_name": "znf503", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90ZE2-1", "protein_name": "Zinc finger protein 703", "gene_name": "znf703", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6UFS5", "url": "https://www.uniprot.org/uniprotkb/Q6UFS5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish acid-sensing ion channel (ASIC) 4, characterization of homo- and heteromeric channels, and identification of regions important for activation by H+.", "journal": "The Journal of biological chemistry", "date": "2007-10-19", "authors": "Chen Xuanmao, Polleichtner Georg, Kadurin Ivan, Gr\u00fcnder Stefan", "reference": { "type": "PubMed", "id": "17686779", "url": "https://pubmed.ncbi.nlm.nih.gov/17686779" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q708S3-1", "protein_name": "Acid-sensing ion channel 4-B", "gene_name": "asic4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q708S4-1", "protein_name": "Acid-sensing ion channel 4-A", "gene_name": "asic4a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q708S3", "url": "https://www.uniprot.org/uniprotkb/Q708S3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17686779", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"journal": "Oncotarget", "date": "2016-04-26", "authors": "Gao Rui, Ma Lin-Qiang, Du Xiaogang, Zhang Ting-Ting, Zhao Liang, Liu Luhong, Liu Jing-Crystal, Guo Fengjin, Cheng Zhi, Huang Huizhe", "reference": { "type": "PubMed", "id": "27007149", "url": "https://pubmed.ncbi.nlm.nih.gov/27007149" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SXJ6-1", "protein_name": "E3 ubiquitin-protein ligase RNF25", "gene_name": "rnf25", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SXJ6", "url": "https://www.uniprot.org/uniprotkb/Q7SXJ6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 124, "end_pos": 127, "sequence_org": "CVIC", "sequence_mut": "AVIA", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q7SXJ6", "url": "https://www.uniprot.org/uniprotkb/Q7SXJ6" }, 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish.", "journal": "Current biology : CB", "date": "2001-02-20", "authors": "M\u00fcller F, Lakatos L, Dantonel J, Str\u00e4hle U, Tora L", "reference": { "type": "PubMed", "id": "11250159", "url": "https://pubmed.ncbi.nlm.nih.gov/11250159" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SXL3-1", "protein_name": "TATA-box-binding protein", "gene_name": "tbp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5U385-1", "protein_name": "TATA box-binding protein-like 1", "gene_name": "tbpl1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SXL3", "url": "https://www.uniprot.org/uniprotkb/Q7SXL3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11250159", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol. Evol.", "date": "2003", "authors": "Bondareva Alla A, Schmidt Edward E", "reference": { "type": "PubMed", "id": "12885957", "url": "https://pubmed.ncbi.nlm.nih.gov/12885957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SXL3-1", "protein_name": "TATA-box-binding protein", "gene_name": "tbp", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SXL3", "url": "https://www.uniprot.org/uniprotkb/Q7SXL3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12885957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Biochem.", "date": "2011", "authors": "Kim Dong-Wook, Kim Kee-Beom, Kim Ji-Young, Seo Sang-Beom", "reference": { "type": "PubMed", "id": "21307598", "url": "https://pubmed.ncbi.nlm.nih.gov/21307598" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SXS7-1", "protein_name": "Actin-histidine N-methyltransferase", "gene_name": "setd3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SXS7", "url": "https://www.uniprot.org/uniprotkb/Q7SXS7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21307598", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of hpf1 expression and function in early embryonic development of zebrafish.", "journal": "Dev. Genes Evol.", "date": "2018", "authors": "Zhang Zhen, Sun Hongwei, Chen Yu, Cao Tianqi, Songyang Zhou, Huang Junjiu, Huang Yan", "reference": { "type": "PubMed", "id": "29549427", "url": "https://pubmed.ncbi.nlm.nih.gov/29549427" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SXS8-1", "protein_name": "Histone PARylation factor 1", "gene_name": "hpf1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SXS8", "url": "https://www.uniprot.org/uniprotkb/Q7SXS8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29549427", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Commun.", "date": "2019", "authors": "Wagner M, Osborn DPS, Gehweiler I, Nagel M, Ulmer U, Bakhtiari S, Amouri R, Boostani R, Hentati F, Hockley MM, Holbling B, Schwarzmayr T, Karimiani EG, Kernstock C, Maroofian R, Muller-Felber W, Ozkan E, Padilla-Lopez S, Reich S, Reichbauer J, Darvish H, Shahmohammadibeni N, Tafakhori A, Vill K, Zuchner S, Kruer MC, Winkelmann J, Jamshidi Y, Schule R", "reference": { "type": "PubMed", "id": "31636353", "url": "https://pubmed.ncbi.nlm.nih.gov/31636353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SZN2-1", "protein_name": "E3 ubiquitin-protein ligase RNF170", "gene_name": "rnf170", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96K19-1", "protein_name": "E3 ubiquitin-protein ligase RNF170", "gene_name": "RNF170", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SZN2", "url": "https://www.uniprot.org/uniprotkb/Q7SZN2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31636353", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"Nature genetics", "date": "2002-06", "authors": "Golling Gregory, Amsterdam Adam, Sun Zhaoxia, Antonelli Marcelo, Maldonado Ernesto, Chen Wenbiao, Burgess Shawn, Haldi Maryann, Artzt Karen, Farrington Sarah, Lin Shuh-Yow, Nissen Robert M, Hopkins Nancy", "reference": { "type": "PubMed", "id": "12006978", "url": "https://pubmed.ncbi.nlm.nih.gov/12006978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7T2P6-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim23", "gene_name": "timm23", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0R0V8-1", "protein_name": "V-type proton ATPase subunit H", "gene_name": "atp6v1h", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q804S5-1", "protein_name": "E3 ubiquitin-protein ligase mib1", "gene_name": "mib1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NW76-1", "protein_name": "Aurora kinase B", "gene_name": "aurkb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6GMI9-1", "protein_name": "UDP-glucuronic acid decarboxylase 1", "gene_name": "uxs1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JGS1-1", "protein_name": "SCL-interrupting locus protein homolog", "gene_name": "stil", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JHI3-1", "protein_name": "ADP-ribosylation factor-like protein 13B", "gene_name": "arl13b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B5M8-1", "protein_name": "Zinc finger CCHC domain-containing protein 7", "gene_name": "zcchc7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FGC2-1", "protein_name": "Structural maintenance of chromosomes protein", "gene_name": "smc4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RHI5-1", "protein_name": "Denticleless protein homolog", "gene_name": "dtl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P59015-1", "protein_name": "Vacuolar protein sorting-associated protein 18 homolog", "gene_name": 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C", "gene_name": "snrpc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JHJ1-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "rpl35", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7T2P6", "url": "https://www.uniprot.org/uniprotkb/Q7T2P6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12006978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Environmental chemicals differentially affect epigenetic-related mechanisms in the zebrafish liver (ZF-L) cell line and in zebrafish embryos.", "journal": "Aquat. Toxicol.", "date": "2019", "authors": "Blanc M\u00e9lanie, R\u00fcegg Jo\u00eblle, Scherbak Nikolai, Keiter Steffen H", "reference": { "type": "PubMed", "id": "31442592", "url": "https://pubmed.ncbi.nlm.nih.gov/31442592" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9Q713-1", "protein_name": "[histone H3]-trimethyl-L-lysine(4) demethylase", "gene_name": "kdm5ba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9Q713", "url": "https://www.uniprot.org/uniprotkb/A0A8M9Q713" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31442592", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of dihydrolipoyl succinyltransferase (DLST) leads to reduced resting heart rate in the zebrafish.", "journal": "Basic Res. Cardiol.", "date": "2015", "authors": "Ke\u00dfler Mirjam, Berger Ina M, Just Steffen, Rottbauer Wolfgang", "reference": { "type": "PubMed", "id": "25697682", "url": "https://pubmed.ncbi.nlm.nih.gov/25697682" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JI08-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "ogdha", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JI08", "url": "https://www.uniprot.org/uniprotkb/B8JI08" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25697682", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted toxicometabolomics of endosulfan sulfate in adult zebrafish (Danio rerio) using GC-MS/MS in multiple reaction monitoring mode.", "journal": "J. Hazard. Mater.", "date": "2020", "authors": "Lee Hwa-Kyung, Kim Kyeongnam, Lee Junghak, Lee Jonghwa, Lee Jiho, Kim Sooyeon, Lee Sung-Eun, Kim Jeong-Han", "reference": { "type": "PubMed", "id": "32000124", "url": "https://pubmed.ncbi.nlm.nih.gov/32000124" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JI08-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "ogdha", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B8JI08", "url": "https://www.uniprot.org/uniprotkb/B8JI08" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32000124", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Pratishtha, Hashemi Narges, Mohammadi Mohammad Hasan, Rad Aboulfazl, Neira Juanita, Toosi Mehran Beiraghi, Knopp Cordula, Kurth Ingo, Challman Thomas D, Smith Rebecca, Abdalla Asmahan, Haaf Thomas, Suri Mohnish, Joshi Manali, Chung Wendy K, Moreno-De-Luca Andres, Houlden Henry, Maroofian Reza, Varshney Gaurav K", "reference": { "type": "PubMed", "id": "38031187", "url": "https://pubmed.ncbi.nlm.nih.gov/38031187" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B8JI08-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "ogdha", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9ULD0-1", "protein_name": "2-oxoglutarate dehydrogenase-like, mitochondrial", "gene_name": "OGDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O42354-1", "protein_name": "E3 ubiquitin-protein ligase Mdm2", "gene_name": "mdm2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": 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Cell. 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Toxicol.", "date": "2020", "authors": "Ling Yuhang, Sun Limei, Wang Danting, Jiang Jiahui, Sun Wenjing, Ai Weiming, Wang Xuedong, Wang Huili", "reference": { "type": "PubMed", "id": "32060586", "url": "https://pubmed.ncbi.nlm.nih.gov/32060586" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0S6S7-1", "protein_name": "ETS translocation variant 5a isoform 1; ETS translocation variant 5a isoform X1", "gene_name": "etv5a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0S6S7", "url": "https://www.uniprot.org/uniprotkb/B0S6S7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32060586", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the neuroligin gene family expression and evolution in zebrafish.", "journal": "Dev. Dyn.", "date": "2010", "authors": "Rissone Alberto, Sangiorgio Lorenzo, Monopoli Matteo, Beltrame Monica, Zucchi Ileana, Bussolino Federico, Arese Marco, Cotelli Franco", "reference": { "type": "PubMed", "id": "20034102", "url": "https://pubmed.ncbi.nlm.nih.gov/20034102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9QKH6-1", "protein_name": "DNA helicase", "gene_name": "atrx", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4T7-1", "protein_name": "glycogenin glucosyltransferase", "gene_name": "gyg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC36K4V6-1", "protein_name": "G-protein coupled receptor 143", "gene_name": "gpr143", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F6F7-1", "protein_name": "Iron-sulfur clusters transporter ABCB7, mitochondrial", "gene_name": "abcb7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N669-1", "protein_name": "Pseudouridine-5'-phosphatase", "gene_name": "pudp", 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Prpf31 is required for hematopoietic stem and progenitor cell expansion during zebrafish embryogenesis.", "journal": "J. Biol. 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Med.", "date": "2023", "authors": "Block Jana, Rashkova Christina, Castanon Irinka, Zoghi Samaneh, Platon Jessica, Ardy Rico C, Fujiwara Mitsuhiro, Chaves Beatriz, Schoppmeyer Rouven, van der Made Caspar I, Jimenez Heredia Raul, Harms Frederike L, Alavi Samin, Alsina Laia, Sanchez Moreno Paula, \u00c1vila Polo Rainiero, Cabrera-P\u00e9rez Roc\u00edo, Kostel Bal Sevgi, Pfajfer Laur\u00e8ne, Ransmayr Bernhard, Mautner Anna-Katharina, Kondo Ryohei, Tinnacher Anna, Caldera Michael, Schuster Michael, Dom\u00ednguez Conde Cecilia, Platzer Ren\u00e9, Salzer Elisabeth, Boyer Thomas, Brunner Han G, Nooitgedagt-Frons Judith E, Iglesias Est\u00edbaliz, Dey\u00e0-Martinez Angela, Camacho-Lovillo Marisol, Menche J\u00f6rg, Bock Christoph, Huppa Johannes B, Pickl Winfried F, Distel Martin, Yoder Jeffrey A, Traver David, Engelhardt Karin R, Linden Tobias, Kager Leo, Hannich J Thomas, Hoischen Alexander, Hambleton Sophie, Illsinger Sabine, Da Costa Lydie, Kutsche Kerstin, Chavoshzadeh Zahra, van Buul Jaap D, Ant\u00f3n Jordi, Calzada-Hern\u00e1ndez Joan, Neth Olaf, Viaud Julien, Nishikimi Akihiko, Dupr\u00e9 Lo\u00efc, Boztug Kaan", "reference": { "type": "PubMed", "id": "37342957", "url": "https://pubmed.ncbi.nlm.nih.gov/37342957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0R034-1", "protein_name": "Dedicator of cytokinesis protein 11", "gene_name": "dock11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5JSL3-1", "protein_name": "Dedicator of cytokinesis protein 11", "gene_name": "DOCK11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A2AF47-1", "protein_name": "Dedicator of cytokinesis protein 11", "gene_name": "Dock11", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0R034", "url": "https://www.uniprot.org/uniprotkb/B0R034" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37342957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "New Insights Into the Evolutionary History of Melatonin Receptors in Vertebrates, With Particular Focus on Teleosts.", "journal": "Front. 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Mol. Neurosci.", "date": "2016", "authors": "Samarut Eric, Bekri Abdelhamid, Drapeau Pierre", "reference": { "type": "PubMed", "id": "27065799", "url": "https://pubmed.ncbi.nlm.nih.gov/27065799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0JME2-1", "protein_name": "Activating transcription factor 7-interacting protein 1", "gene_name": "atf7ip", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0JME2", "url": "https://www.uniprot.org/uniprotkb/A0JME2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27065799", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analyses of mRNA structure dynamics identify embryonic gene regulatory programs.", "journal": "Nat. Struct. Mol. Biol.", "date": "2018", "authors": "Beaudoin Jean-Denis, Novoa Eva Maria, Vejnar Charles E, Yartseva Valeria, Takacs Carter M, Kellis Manolis, Giraldez Antonio J", "reference": { "type": "PubMed", "id": "30061596", "url": "https://pubmed.ncbi.nlm.nih.gov/30061596" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0JME2-1", "protein_name": "Activating transcription factor 7-interacting protein 1", "gene_name": "atf7ip", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S585-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "mapre1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLP7-1", "protein_name": "Ankyrin repeat domain-containing protein 12", "gene_name": "ankrd12", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N8U6-1", "protein_name": "Suppressor of tumorigenicity 14 protein homolog", "gene_name": "st14a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BE48-1", 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Biochem.", "date": "2010", "authors": "Shimomura Sachiko, Nagamine Tadashi, Hatano Naoya, Sueyoshi Noriyuki, Kameshita Isamu", "reference": { "type": "PubMed", "id": "20097902", "url": "https://pubmed.ncbi.nlm.nih.gov/20097902" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0UXI4-1", "protein_name": "Synapsin-1", "gene_name": "syn1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IJU5-1", "protein_name": "Synapsin-1", "gene_name": "syn2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0UXI4", "url": "https://www.uniprot.org/uniprotkb/B0UXI4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20097902", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ 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"crebbpb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R215-1", "protein_name": "General transcription factor 3C polypeptide 2 isoform X1", "gene_name": "gtf3c2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PHR3-1", "protein_name": "Histone acetyltransferase", "gene_name": "kat8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9QDW0", "url": "https://www.uniprot.org/uniprotkb/A0A8M9QDW0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30615915", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": 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Biol. 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Biol.", "date": "2015", "authors": "Love Crystal E, Prince Victoria E", "reference": { "type": "PubMed", "id": "25769695", "url": "https://pubmed.ncbi.nlm.nih.gov/25769695" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9QEH5-1", "protein_name": "Serine/arginine repetitive matrix protein 4", "gene_name": "srrm4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKA2-1", "protein_name": "RE1-silencing transcription factor", "gene_name": "rest", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9QEH5", "url": "https://www.uniprot.org/uniprotkb/A0A8M9QEH5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25769695", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel protein domain in an ancestral splicing factor drove the evolution of neural microexons.", "journal": "Nat. Ecol. Evol.", "date": "2019", "authors": "Torres-M\u00e9ndez Antonio, Bonnal Sophie, Marquez Yamile, Roth Jonathan, Iglesias Marta, Permanyer Jon, Almud\u00ed Isabel, O'Hanlon Dave, Guitart Tanit, Soller Matthias, Gingras Anne-Claude, Gebauer F\u00e1tima, Rentzsch Fabian, Blencowe Benjamin J, Valc\u00e1rcel Juan, Irimia Manuel", "reference": { "type": "PubMed", "id": "30833759", "url": "https://pubmed.ncbi.nlm.nih.gov/30833759" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9QEH5-1", "protein_name": "Serine/arginine repetitive matrix protein 4", "gene_name": "srrm4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1X7-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "srrm1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QLP6-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "srrm2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9QEH5", "url": "https://www.uniprot.org/uniprotkb/A0A8M9QEH5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30833759", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Triclosan regulates alternative splicing events of nerve-related genes through RNA-binding protein CELF2 to induce zebrafish neurotoxicity.", "journal": "J. Hazard. Mater.", "date": "2021", "authors": "Wang Danting, Wang Xuedong, Huang Haishan, Wang Huili", "reference": { "type": "PubMed", "id": "33621777", "url": "https://pubmed.ncbi.nlm.nih.gov/33621777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9QEH5-1", "protein_name": "Serine/arginine repetitive matrix protein 4", "gene_name": "srrm4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W7R3-1", "protein_name": "Teneurin-4", "gene_name": "tenm4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PK58-1", "protein_name": "RNA binding protein fox-1 homolog", "gene_name": "rbfox2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HGB3-1", "protein_name": "Cell adhesion molecule 4", "gene_name": "cadm4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9QEH5", "url": "https://www.uniprot.org/uniprotkb/A0A8M9QEH5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33621777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Specialization of the photoreceptor transcriptome by Srrm3-dependent microexons is required for outer segment maintenance and vision.", "journal": "Proc. 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Biol.", "date": "2006", "authors": "Covassin Laurence, Amigo Julio D, Suzuki Kana, Teplyuk Viktor, Straubhaar Juerg, Lawson Nathan D", "reference": { "type": "PubMed", "id": "16999953", "url": "https://pubmed.ncbi.nlm.nih.gov/16999953" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A3KPJ4-1", "protein_name": "3.1.3.48; Receptor-type tyrosine-protein phosphatase N2 precursor", "gene_name": "ptprn2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P6J4-1", "protein_name": "interstitial collagenase", "gene_name": "mmp13a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2M5-1", "protein_name": "MAC-inhibitory protein", "gene_name": "cd59a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0L7-1", "protein_name": "Chloride intracellular channel protein", "gene_name": "clic2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P9G4-1", "protein_name": "Disabled homolog 2 isoform X1; Disabled homolog 2 isoform a", "gene_name": "dab2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UZW2-1", "protein_name": "carbonyl reductase (NADPH)", "gene_name": "cbr1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7B9-1", "protein_name": "Tyrosine-protein kinase", "gene_name": "yrk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A3KPJ4", "url": "https://www.uniprot.org/uniprotkb/A3KPJ4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16999953", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "FAF1, a gene that is disrupted in cleft palate and has conserved function in zebrafish.", "journal": "Am. J. Hum. Genet.", "date": "2011", "authors": "Ghassibe-Sabbagh Michella, Desmyter Laurence, Langenberg Tobias, Claes Filip, Boute Odile, Bayet B\u00e9n\u00e9dicte, Pellerin Philippe, Hermans Karlien, Backx Liesbeth, Mansilla Maria Adela, Imoehl Sandra, Nowak Stefanie, Ludwig Kerstin U, Baluardo Carlotta, Ferrian Melissa, Mossey Peter A, Noethen Markus, Dewerchin Mieke, Fran\u00e7ois Genevi\u00e8ve, Revencu Nicole, Vanwijck Romain, Hecht Jacqueline, Mangold Elisabeth, Murray Jeffrey, Rubini Michele, Vermeesch Joris R, Poirel H\u00e9l\u00e8ne A, Carmeliet Peter, Vikkula Miikka", "reference": { "type": "PubMed", "id": "21295280", "url": "https://pubmed.ncbi.nlm.nih.gov/21295280" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0UXY9-1", "protein_name": "FAS-associated factor 1", "gene_name": "faf1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0UXY9", "url": "https://www.uniprot.org/uniprotkb/B0UXY9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21295280", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish dmrta2 regulates the expression of cdkn2c in spermatogenesis in the adult testis.", "journal": "Biol. Reprod.", "date": "2013", "authors": "Xu Shan, Xia Wei, Zohar Yonathan, Gui Jian-Fang", "reference": { "type": "PubMed", "id": "23175770", "url": "https://pubmed.ncbi.nlm.nih.gov/23175770" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B0UXY9-1", "protein_name": "FAS-associated factor 1", "gene_name": "faf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UXZ0-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor C", "gene_name": "cdkn2c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V2S5-1", "protein_name": "RING finger protein 11", "gene_name": "rnf11b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B0UXY9", "url": "https://www.uniprot.org/uniprotkb/B0UXY9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23175770", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]