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Neurobiol.", "date": "2021", "authors": "Jeong Inyoung, Yun Seongsik, Shahapal Anu, Cho Eun Bee, Hwang Sun Wook, Seong Jae Young, Park Hae-Chul", "reference": { "type": "PubMed", "id": "34176096", "url": "https://pubmed.ncbi.nlm.nih.gov/34176096" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6YBR5-1", "protein_name": "Nerve growth factor", "gene_name": "ngfb; ngf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8K1-1", "protein_name": "TAFA chemokine like family member 1a isoform 1 precursor", "gene_name": "tafa1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QIB8-1", "protein_name": "Chemokine-like protein TAFA-5a isoform 1", "gene_name": "tafa5a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6YBR5", "url": "https://www.uniprot.org/uniprotkb/Q6YBR5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34176096", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of Nerve Growth Factor and Its Receptor TrkA in the Reproductive System of Adult Zebrafish.", "journal": "Vet Sci", "date": "2022", "authors": "Cacialli Pietro", "reference": { "type": "PubMed", "id": "35622754", "url": "https://pubmed.ncbi.nlm.nih.gov/35622754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6YBR5-1", "protein_name": "Nerve growth factor", "gene_name": "ngfb; 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J. 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Photobiol.", "date": "2009", "authors": "Sandrini Juliana Z, Trindade Gilma S, Nery Luiz Eduardo M, Marins Luis F", "reference": { "type": "PubMed", "id": "18764902", "url": "https://pubmed.ncbi.nlm.nih.gov/18764902" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2YDS1-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "ddb2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7V0N6-1", "protein_name": "N-glycosylase/DNA lyase", "gene_name": "ogg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IB13-1", "protein_name": "DNA repair protein Ku80", "gene_name": "xrcc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MTA1-1", "protein_name": "DNA repair nuclease APEX1", "gene_name": "apex1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVE4-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "xpc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58I2J2-1", "protein_name": "DNA repair protein RAD51 homolog", "gene_name": "rad51", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q2YDS1", "url": "https://www.uniprot.org/uniprotkb/Q2YDS1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18764902", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Hazard. Mater.", "date": "2019", "authors": "Komoike Yuta, Matsuoka Masato", "reference": { "type": "PubMed", "id": "30453236", "url": "https://pubmed.ncbi.nlm.nih.gov/30453236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2YDS1-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "ddb2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BGQ6-1", "protein_name": "Cell cycle checkpoint protein RAD17", "gene_name": "rad17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QPT3-1", "protein_name": "Double-strand break repair protein", "gene_name": "mre11a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q2YDS1", "url": "https://www.uniprot.org/uniprotkb/Q2YDS1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30453236", "abstract": "", "glycosylation": [], "mutagenesis": 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Vallone Daniela, Bertolucci Cristiano, Foulkes Nicholas S", "reference": { "type": "PubMed", "id": "33544716", "url": "https://pubmed.ncbi.nlm.nih.gov/33544716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2YDS1-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "ddb2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVE4-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "xpc", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q2YDS1", "url": "https://www.uniprot.org/uniprotkb/Q2YDS1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33544716", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Toxicol.", "date": "2022", "authors": "Shi Wen-Jun, Long Xiao-Bing, Li Si-Ying, Ma Dong-Dong, Liu Fang, Zhang Jin-Ge, Lu Zhi-Jie, Ying Guang-Guo", "reference": { "type": "PubMed", "id": "35512552", "url": "https://pubmed.ncbi.nlm.nih.gov/35512552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2YDS1-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "ddb2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RAU6-1", "protein_name": "Nuclear receptor subfamily 1 group D member 1", "gene_name": "nr1d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IH97-1", "protein_name": "Aryl hydrocarbon receptor nuclear translocator-like protein 2", "gene_name": "bmal2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ16-1", "protein_name": "Gamma-aminobutyric acid receptor subunit rho-1", "gene_name": "gabrr1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5VSI8-1", "protein_name": "24-hydroxycholesterol 7-alpha-hydroxylase", "gene_name": "cyp39a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13ABQ9-1", "protein_name": "TEF transcription factor, PAR bZIP family member a isoform 1", "gene_name": "tefa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q2YDS1", "url": "https://www.uniprot.org/uniprotkb/Q2YDS1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35512552", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", 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Genet. Genomics", "date": "2007", "authors": "McPartland J M, Glass Michelle, Matias Isabel, Norris Ryan W, Kilpatrick C William", "reference": { "type": "PubMed", "id": "17256142", "url": "https://pubmed.ncbi.nlm.nih.gov/17256142" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5PNP1-1", "protein_name": "Sorting nexin-14", "gene_name": "snx14", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RJ40-1", "protein_name": "N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D", "gene_name": "napepld", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBZ9-1", "protein_name": "5'-nucleotidase", "gene_name": "nt5e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NBY7-1", "protein_name": "Eukaryotic translation initiation factor 2-alpha kinase 1", "gene_name": "eif2ak1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q05AM4-1", "protein_name": "Fatty-acid amide hydrolase 2-B", "gene_name": "faah2b", "tax_name": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An antiapoptotic role of sorting nexin 7 is required for liver development in zebrafish.", "journal": "Hepatology", "date": "2012", "authors": "Xu Liangliang, Yin Wenguang, Xia Jianhong, Peng Meixiu, Li Song, Lin Shuo, Pei Duanqing, Shu Xiaodong", "reference": { "type": "PubMed", "id": "22213104", "url": "https://pubmed.ncbi.nlm.nih.gov/22213104" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5PNP1-1", 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"uniprot_canonical_ac": "F1Q9I7-1", "protein_name": "Sorting nexin-1", "gene_name": "snx1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NGW9-1", "protein_name": "Sorting nexin-8a", "gene_name": "snx8a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W5C6-1", "protein_name": "Sorting nexin", "gene_name": "snx6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5PNP1", "url": "https://www.uniprot.org/uniprotkb/Q5PNP1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22213104", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Bastaki L, Temtamy S, Muller U, Desguerre I, Casanova JL, Dursun A, Gunel M, Gabriel SB, de Lonlay P, Gleeson JG", "reference": { "type": "PubMed", "id": "25848753", "url": "https://pubmed.ncbi.nlm.nih.gov/25848753" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5PNP1-1", "protein_name": "Sorting nexin-14", "gene_name": "snx14", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9Y5W7-1", "protein_name": "Sorting nexin-14", "gene_name": "SNX14", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5PNP1", "url": "https://www.uniprot.org/uniprotkb/Q5PNP1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25848753", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Mol. Genet.", "date": "2016", "authors": "Josifova DJ, Monroe GR, Tessadori F, de Graaff E, van der Zwaag B, Mehta SG, Harakalova M, Duran KJ, Savelberg SM, Nijman IJ, Jungbluth H, Hoogenraad CC, Bakkers J, Knoers NV, Firth HV, Beales PL, van Haaften G, van Haelst MM", "reference": { "type": "PubMed", "id": "27005418", "url": "https://pubmed.ncbi.nlm.nih.gov/27005418" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7T163-1", "protein_name": "Kinase D-interacting substrate of 220 kDa B", "gene_name": "kidins220b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9ULH0-1", "protein_name": "Kinase D-interacting substrate of 220 kDa", "gene_name": "KIDINS220", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7T163", "url": "https://www.uniprot.org/uniprotkb/Q7T163" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27005418", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A family of acid-sensing ion channels (ASICs) from the zebrafish: widespread expression in the central nervous system suggests a conserved role in neuronal communication.", "journal": "J. 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Biol.", "date": "2008", "authors": "Ahn Daegwon, Ho Robert K", "reference": { "type": "PubMed", "id": "18638469", "url": "https://pubmed.ncbi.nlm.nih.gov/18638469" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PFM4-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark-B", "gene_name": "lnpkb; lnpk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWB0-1", "protein_name": "Tax1-binding protein 1 homolog A", "gene_name": "tax1bp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P132-1", "protein_name": "Tax1-binding protein 1 homolog B", "gene_name": "tax1bp1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PFM4", "url": "https://www.uniprot.org/uniprotkb/Q6PFM4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18638469", "abstract": "", 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Commun.", "date": "2004", "authors": "Mikami Yoshinori, Yoshida Tomoyuki, Matsuda Naoto, Mishina Masayoshi", "reference": { "type": "PubMed", "id": "15313188", "url": "https://pubmed.ncbi.nlm.nih.gov/15313188" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q68Y21-1", "protein_name": "Glutamate receptor ionotropic, delta-2", "gene_name": "grid2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q68Y21", "url": "https://www.uniprot.org/uniprotkb/Q68Y21" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15313188", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"Incomplete splicing of neutrophil-specific genes affects neutrophil development in a zebrafish model of poikiloderma with neutropenia.", "journal": "RNA biology", "date": "2015", "authors": "Patil Prakash, Uechi Tamayo, Kenmochi Naoya", "reference": { "type": "PubMed", "id": "25849198", "url": "https://pubmed.ncbi.nlm.nih.gov/25849198" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DEF6-1", "protein_name": "U6 snRNA phosphodiesterase 1", "gene_name": "usb1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6DEF6", "url": "https://www.uniprot.org/uniprotkb/Q6DEF6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25849198", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Cell Sci.", "date": "2008", "authors": "Townley Anna K, Feng Yi, Schmidt Katy, Carter Deborah A, Porter Robert, Verkade Paul, Stephens David J", "reference": { "type": "PubMed", "id": "18713835", "url": "https://pubmed.ncbi.nlm.nih.gov/18713835" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SYD5-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "sec31a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SYD5", "url": "https://www.uniprot.org/uniprotkb/Q7SYD5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18713835", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Epithelial organization and cyst lumen expansion require efficient Sec13-Sec31-driven secretion.", "journal": "J. Cell Sci.", "date": "2012", "authors": "Townley Anna K, Schmidt Katy, Hodgson Lorna, Stephens David J", "reference": { "type": "PubMed", "id": "22331354", "url": "https://pubmed.ncbi.nlm.nih.gov/22331354" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SYD5-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "sec31a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SYD5", "url": "https://www.uniprot.org/uniprotkb/Q7SYD5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22331354", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sec13 safeguards the integrity of the endoplasmic reticulum and organogenesis of the digestive system in zebrafish.", "journal": "Dev. Biol.", "date": "2012", "authors": "Niu Xubo, Gao Chuan, Jan Lo Li, Luo Yue, Meng Chunmei, Hong Jian, Hong Wanjin, Peng Jinrong", "reference": { "type": "PubMed", "id": "22609279", "url": "https://pubmed.ncbi.nlm.nih.gov/22609279" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SYD5-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "sec31a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V233-1", "protein_name": "Junctional adhesion molecule 2b precursor", "gene_name": "jam2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RH85-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-6 alpha", "gene_name": "atf6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8S4-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "ern1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SYD5", 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mutation leads to apoptosis mediated by p53 in the zebrafish central nervous system.", "journal": "The Journal of biological chemistry", "date": "2006-05-12", "authors": "Azuma Mizuki, Toyama Reiko, Laver Elizabeth, Dawid Igor B", "reference": { "type": "PubMed", "id": "16531401", "url": "https://pubmed.ncbi.nlm.nih.gov/16531401" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SY48-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "heatr1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SY48", "url": "https://www.uniprot.org/uniprotkb/Q7SY48" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16531401", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression profiles of ndel1a and ndel1b, two orthologs of the NudE-Like gene, in the zebrafish.", "journal": "Gene expression patterns : GEP", "date": "2007-06", "authors": "Drerup Catherine M, Ahlgren Sara C, Morris Jill A", "reference": { "type": "PubMed", "id": "17482883", "url": "https://pubmed.ncbi.nlm.nih.gov/17482883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SXI6-1", "protein_name": "Nuclear distribution protein nudE-like 1-A", "gene_name": "ndel1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q803Q2-1", "protein_name": "Nuclear distribution protein nudE-like 1-B", "gene_name": "ndel1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SXI6", "url": "https://www.uniprot.org/uniprotkb/Q7SXI6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17482883", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enhancer activity-based identification of functional enhancers using zebrafish embryos.", "journal": "Genomics", "date": "2016", "authors": "Taminato Tomohito, Yokota Daisuke, Araki Soh, Ovara Hiroki, Yamasu Kyo, Kawamura Akinori", "reference": { "type": "PubMed", "id": "27256877", "url": "https://pubmed.ncbi.nlm.nih.gov/27256877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6IQX0-1", "protein_name": "Lysine-specific demethylase 5B-B", "gene_name": "kdm5bb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6IQX0", "url": "https://www.uniprot.org/uniprotkb/Q6IQX0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27256877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Myomaker is required for the fusion of fast-twitch myocytes in the zebrafish embryo.", "journal": "Developmental biology", "date": "2017-03-01", "authors": "Zhang Weibin, Roy Sudipto", "reference": { "type": "PubMed", "id": "28161523", "url": "https://pubmed.ncbi.nlm.nih.gov/28161523" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6IQ69-1", "protein_name": "Protein myomaker", "gene_name": "mymk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6IQ69", "url": "https://www.uniprot.org/uniprotkb/Q6IQ69" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28161523", "abstract": "", "glycosylation": [], "mutagenesis": 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U.S.A.", "date": "2017", "authors": "Shi Jun, Bi Pengpeng, Pei Jimin, Li Hui, Grishin Nick V, Bassel-Duby Rhonda, Chen Elizabeth H, Olson Eric N", "reference": { "type": "PubMed", "id": "29078404", "url": "https://pubmed.ncbi.nlm.nih.gov/29078404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6IQ69-1", "protein_name": "Protein myomaker", "gene_name": "mymk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P0DP88-1", "protein_name": "Protein myomixer", "gene_name": "mymx", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6IQ69", "url": "https://www.uniprot.org/uniprotkb/Q6IQ69" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 58, "end_pos": 67, "sequence_org": "AILGCVLCLL", "sequence_mut": "", "comment": "Abolished ability to mediate myoblast fusion.", "evidence": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Higher-order assembly of BRCC36-KIAA0157 is required for DUB activity and biological function.", "journal": "Mol. Cell", "date": "2015", "authors": "Zeqiraj E, Tian L, Piggott CA, Pillon MC, Duffy NM, Ceccarelli DF, Keszei AF, Lorenzen K, Kurinov I, Orlicky S, Gish GD, Heck AJ, Guarne A, Greenberg RA, Sicheri F", "reference": { "type": "PubMed", "id": "26344097", "url": "https://pubmed.ncbi.nlm.nih.gov/26344097" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q568D5-1", "protein_name": "BRISC and BRCA1-A complex member 2", "gene_name": "babam2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6AXK4-1", "protein_name": "BRISC and BRCA1-A complex member 1", "gene_name": "babam1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3TCJ1-1", "protein_name": "BRISC complex subunit Abraxas 2", "gene_name": "Abraxas2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8M3AJY3-1", "protein_name": "BRISC complex subunit abraxas 2", "gene_name": "abraxas2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B525-1", "protein_name": "Lys-63-specific deubiquitinase", "gene_name": "brcc3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P46736-1", "protein_name": "Lys-63-specific deubiquitinase BRCC36", "gene_name": "BRCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15018-1", "protein_name": "BRISC complex subunit Abraxas 2", "gene_name": "ABRAXAS2", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q568D5", "url": "https://www.uniprot.org/uniprotkb/Q568D5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 23, "end_pos": 23, "sequence_org": "L", "sequence_mut": "R", "comment": "Abolishes localization to sites of DNA damage and interaction with ABRAXAS2; UIMC1; SHMT2; BARAM2 and BABAM1; when associated with R-27.", "evidence": [ { "database": "UniProtKB", "id": "P46736", "url": "https://www.uniprot.org/uniprotkb/P46736" }, { "database": "PubMed", "id": "26344097", "url": "https://pubmed.ncbi.nlm.nih.gov/26344097" } ], "uniprot_canonical_ac": "P46736-1" }, { "start_pos": 278, "end_pos": 278, "sequence_org": "A", "sequence_mut": "R", "comment": "Abolishes interaction with UIMC1 and SHMT2.", "evidence": [ { "database": "UniProtKB", "id": "P46736", "url": "https://www.uniprot.org/uniprotkb/P46736" }, { "database": "PubMed", "id": "26344097", "url": "https://pubmed.ncbi.nlm.nih.gov/26344097" } ], "uniprot_canonical_ac": "P46736-1" }, { "start_pos": 27, "end_pos": 27, "sequence_org": "L", "sequence_mut": "R", "comment": "Abolishes localization to sites of DNA damage and interaction with ABRAXAS2; UIMC1; SHMT2; BABAM2 and BABAM1; when associated with R-23.", "evidence": [ { "database": "UniProtKB", "id": "P46736", "url": "https://www.uniprot.org/uniprotkb/P46736" }, { "database": "PubMed", "id": "26344097", "url": "https://pubmed.ncbi.nlm.nih.gov/26344097" } ], "uniprot_canonical_ac": "P46736-1" }, { "start_pos": 11, "end_pos": 12, "sequence_org": "SA", "sequence_mut": "RR", "comment": "Slightly reduces interaction with BBRC36. 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Abolishes interaction with BRCC3 and strongly reduces interaction with SHMT2; BABAM2 and BABAM1; when associated with Y-231 and Y-241.", "evidence": [ { "database": "UniProtKB", "id": "Q15018", "url": "https://www.uniprot.org/uniprotkb/Q15018" }, { "database": "PubMed", "id": "26344097", "url": "https://pubmed.ncbi.nlm.nih.gov/26344097" } ], "uniprot_canonical_ac": "Q15018-1" }, { "start_pos": 231, "end_pos": 231, "sequence_org": "E", "sequence_mut": "Y", "comment": "Strongly reduces interaction with BBRC3; SHMT2; BABAM2 and BABAM1; when associated with R-220. Abolishes interaction with BRCC3 and strongly reduces interaction with SHMT2; BABAM2 and BABAM1; when associated with R-220 and Y-241.", "evidence": [ { "database": "UniProtKB", "id": "Q15018", "url": "https://www.uniprot.org/uniprotkb/Q15018" }, { "database": "PubMed", "id": "26344097", "url": "https://pubmed.ncbi.nlm.nih.gov/26344097" } ], "uniprot_canonical_ac": "Q15018-1" }, { "start_pos": 241, "end_pos": 241, "sequence_org": "V", "sequence_mut": "R", "comment": "Abolishes interaction with BRCC3 and strongly reduces interaction with SHMT2; BABAM2 and BABAM1; when associated with R-220 and Y-231.", "evidence": [ { "database": "UniProtKB", "id": "Q15018", "url": "https://www.uniprot.org/uniprotkb/Q15018" }, { "database": "PubMed", "id": "26344097", "url": "https://pubmed.ncbi.nlm.nih.gov/26344097" } ], "uniprot_canonical_ac": "Q15018-1" } ], "record_id": "pubmed.26344097", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Biol.", "date": "2006", "authors": "Link Vinzenz, Shevchenko Andrej, Heisenberg Carl-Philipp", "reference": { "type": "PubMed", "id": "16412219", "url": "https://pubmed.ncbi.nlm.nih.gov/16412219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PEI7-1", "protein_name": "CTP synthase 1", "gene_name": "ctps1a; ctps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2AWE1-1", "protein_name": "Peroxiredoxin-1", "gene_name": "prdx1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZUH1-1", "protein_name": "tRNA-splicing ligase complex subunit RTRAF", "gene_name": "rtraf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLJ3-1", "protein_name": "14-3-3 protein zeta/delta", "gene_name": "ywhaz", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PT92-1", "protein_name": "Catalase", "gene_name": "cat", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PEI7", "url": "https://www.uniprot.org/uniprotkb/Q6PEI7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16412219", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos.", "journal": "Mol. Cell. Proteomics", "date": "2008", "authors": "Lemeer Simone, Jopling Chris, Gouw Joost, Mohammed Shabaz, Heck Albert J R, Slijper Monique, den Hertog Jeroen", "reference": { "type": "PubMed", "id": "18550893", "url": "https://pubmed.ncbi.nlm.nih.gov/18550893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PEI7-1", "protein_name": "CTP synthase 1", "gene_name": "ctps1a; ctps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UXI4-1", "protein_name": "Synapsin-1", "gene_name": "syn1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BID5-1", "protein_name": "Desmoplakin-A", "gene_name": "dspa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q08CK7-1", "protein_name": "Insulin-like growth factor 2 mRNA-binding protein 1", "gene_name": "igf2bp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PC92-1", "protein_name": "Sec1 family domain-containing protein 1", "gene_name": "scfd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PEI7", "url": "https://www.uniprot.org/uniprotkb/Q6PEI7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18550893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The endothelin system: evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication.", "journal": "Mol. 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Evol.", "date": "2009", "authors": "Braasch Ingo, Volff Jean-Nicolas, Schartl Manfred", "reference": { "type": "PubMed", "id": "19174480", "url": "https://pubmed.ncbi.nlm.nih.gov/19174480" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PEI7-1", "protein_name": "CTP synthase 1", "gene_name": "ctps1a; ctps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1MT02-1", "protein_name": "Endothelin-2 precursor", "gene_name": "edn2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG78-1", "protein_name": "CTP synthase", "gene_name": "ctps1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PEI7", "url": "https://www.uniprot.org/uniprotkb/Q6PEI7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19174480", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CTP synthase knockdown during early development distorts the nascent vertebral column and causes fluid retention in multiple tissues in zebrafish.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2018", "authors": "Dzaki Najat, Wahab Wahidah, Azlan Azali, Azzam Ghows", "reference": { "type": "PubMed", "id": "30241946", "url": "https://pubmed.ncbi.nlm.nih.gov/30241946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PEI7-1", "protein_name": "CTP synthase 1", "gene_name": "ctps1a; ctps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG78-1", "protein_name": "CTP synthase", "gene_name": "ctps1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PEI7", "url": "https://www.uniprot.org/uniprotkb/Q6PEI7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30241946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CTPS forms the cytoophidium in zebrafish.", "journal": "Exp. 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Biophys. Res. 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J. Hum. 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Cell Sci.", "date": "2014", "authors": "Hagemann Anja I H, Kurz Jennifer, Kauffeld Silke, Chen Qing, Reeves Patrick M, Weber Sabrina, Schindler Simone, Davidson Gary, Kirchhausen Tomas, Scholpp Steffen", "reference": { "type": "PubMed", "id": "25074807", "url": "https://pubmed.ncbi.nlm.nih.gov/25074807" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NWK2-1", "protein_name": "AP-2 complex subunit mu-A", "gene_name": "ap2m1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6NWK2", "url": "https://www.uniprot.org/uniprotkb/Q6NWK2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25074807", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A new mib allele with a chromosomal deletion covering foxc1a exhibits anterior somite specification defect.", "journal": "Sci. Rep.", "date": "2015", "authors": "Hsu Chia-Hao, Lin Ji-Sheng, Po Lai Keng, Li Jing-Woei, Chan Ting-Fung, You May-Su, Tse William Ka Fai, Jiang Yun-Jin", "reference": { "type": "PubMed", "id": "26039894", "url": "https://pubmed.ncbi.nlm.nih.gov/26039894" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NWK2-1", "protein_name": "AP-2 complex subunit mu-A", "gene_name": "ap2m1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JKP6-1", "protein_name": "GREB1-like protein", "gene_name": "greb1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A286YAJ7-1", "protein_name": "Abl interactor 1b isoform X1", "gene_name": "abi1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q2J0-1", "protein_name": "NPC intracellular cholesterol transporter 1 isoform X1", "gene_name": "npc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IJC7-1", "protein_name": "ATP-dependent zinc metalloprotease YME1L1", "gene_name": "yme1l1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NFI3-1", "protein_name": "Mohawk homeobox b", "gene_name": "mkxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCE5-1", "protein_name": "Zinc finger-like gene 2a", "gene_name": "znfl2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6NWK2", "url": "https://www.uniprot.org/uniprotkb/Q6NWK2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26039894", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein Arginine Methyltransferase 6 (Prmt6) Is Essential for Early Zebrafish Development through the Direct Suppression of gadd45alphaa Stress Sensor Gene.", "journal": "J. Biol. Chem.", "date": "2016", "authors": "Zhao Xin-Xi, Zhang Yun-Bin, Ni Pei-Li, Wu Zhi-Li, Yan Yuan-Chang, Li Yi-Ping", "reference": { "type": "PubMed", "id": "26487724", "url": "https://pubmed.ncbi.nlm.nih.gov/26487724" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NWG4-1", "protein_name": "Protein arginine N-methyltransferase 6", "gene_name": "prmt6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QB27-1", "protein_name": "Borealin-2 isoform 1", "gene_name": "cdca9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6NWG4", "url": "https://www.uniprot.org/uniprotkb/Q6NWG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26487724", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Commun.", "date": "2025", "authors": "Neelathi Uma M, Ullah Ehsan, George Aman, Maftei Mara I, Boobalan Elangovan, Sanchez-Mendoza Daniel, Adams Chloe, McGaughey David, Sergeev Yuri V, Ai Rawi Ranya, Naik Amelia, Bender Chelsea, Maumenee Irene H, Michaelides Michel, Tan Tun Giap, Lin Siying, Villasmil Rafael, Blain Delphine, Hufnagel Robert B, Arno Gavin, Young Rodrigo M, Guan Bin, Brooks Brian P", "reference": { "type": "PubMed", "id": "40610405", "url": "https://pubmed.ncbi.nlm.nih.gov/40610405" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4V8R7-1", "protein_name": "Nuclear receptor subfamily 6 group A member 1-B", "gene_name": "nr6a1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q64249-1", "protein_name": "Nuclear receptor subfamily 6 group A member 1", "gene_name": "Nr6a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q15406-1", "protein_name": "Nuclear receptor subfamily 6 group A member 1", "gene_name": "NR6A1", "tax_name": 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Gholamreza, Mohammadi Pouria, Samie Saeed, Banu Selina Husna, Basto Jorge Pinto, Kort\u00fcm Fanny, Bauer Mislen, Bauer Peter, Beetz Christian, Garshasbi Masoud, Hameed Issa Awatif, Eyaid Wafaa, Ahmed Hind, Hashemi Narges, Hassanpour Kazem, Herman Isabella, Ibrohimov Sherozjon, Abdul-Majeed Ban A, Imdad Maria, Isrofilov Maksudjon, Kaiyal Qassem, Khan Suliman, Kirmse Brian, Koster Janet, Louren\u00e7o Charles Marques, Mitani Tadahiro, Moldovan Oana, Murphy David, Najafi Maryam, Pehlivan Davut, Rocha Maria Eugenia, Salpietro Vincenzo, Schmidts Miriam, Shalata Adel, Mahroum Mohammad, Talbeya Jawabreh Kassem, Taylor Robert W, Vazquez Dayana, Vetro Annalisa, Waterham Hans R, Zaman Mashaya, Schrader Tina A, Chung Wendy K, Guerrini Renzo, Lupski James R, Gleeson Joseph, Suri Mohnish, Jamshidi Yalda, Bhatia Kailash P, Vona Barbara, Schrader Michael, Severino Mariasavina, Guille Matthew, Tate Edward W, Varshney Gaurav K, Houlden Henry, Maroofian Reza", "reference": { "type": "PubMed", "id": "37951597", "url": "https://pubmed.ncbi.nlm.nih.gov/37951597" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4V8X4-1", "protein_name": "Acyl-CoA-binding domain-containing protein 6", "gene_name": "acbd6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9BR61-1", "protein_name": "Acyl-CoA-binding domain-containing protein 6", "gene_name": "ACBD6", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4V8X4", "url": "https://www.uniprot.org/uniprotkb/Q4V8X4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37951597", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel tumor necrosis factor (TNF) gene present in tandem with theTNF-alpha gene on the same chromosome in teleosts.", "journal": "Immunogenetics", "date": "2005", "authors": "Savan Ram, Kono Tomoya, Igawa Daisuke, Sakai Masahiro", "reference": { "type": "PubMed", "id": "15759114", "url": "https://pubmed.ncbi.nlm.nih.gov/15759114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4W898-1", "protein_name": "Lymphotoxin-alpha", "gene_name": "tnfb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4W898", "url": "https://www.uniprot.org/uniprotkb/Q4W898" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15759114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Delineation of the cell-extrinsic apoptosis pathway in the zebrafish.", "journal": "Cell Death Differ.", "date": "2006", "authors": "Eimon P M, Kratz E, Varfolomeev E, Hymowitz S G, Stern H, Zha J, Ashkenazi A", "reference": { "type": "PubMed", "id": "16888647", "url": "https://pubmed.ncbi.nlm.nih.gov/16888647" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4W898-1", "protein_name": "Lymphotoxin-alpha", "gene_name": "tnfb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IXF0-1", "protein_name": "FAS-associated death domain protein", "gene_name": "fadd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N2M7-1", "protein_name": "Caspase-6", "gene_name": "casp6b.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N906-1", "protein_name": "Tumor necrosis factor receptor superfamily member 21 precursor", "gene_name": "tnfrsf21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H6L3-1", "protein_name": "Caspase-3", "gene_name": "casp3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P2J9-1", "protein_name": "CASP8 and FADD-like apoptosis regulator a", "gene_name": "cflara", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P718-1", "protein_name": "Tumor necrosis factor receptor superfamily, member a precursor", "gene_name": "tnfrsfa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4W898", "url": "https://www.uniprot.org/uniprotkb/Q4W898" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16888647", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tumor necrosis factor signaling mediates resistance to mycobacteria by inhibiting bacterial growth and macrophage death.", "journal": "Immunity", "date": "2008", "authors": "Clay Hilary, Volkman Hannah E, Ramakrishnan Lalita", "reference": { "type": "PubMed", "id": "18691913", "url": "https://pubmed.ncbi.nlm.nih.gov/18691913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4W898-1", "protein_name": "Lymphotoxin-alpha", "gene_name": "tnfb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4W898", "url": "https://www.uniprot.org/uniprotkb/Q4W898" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18691913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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Immunol.", "date": "2008", "authors": "Roca Francisco J, Mulero Iv\u00e1n, L\u00f3pez-Mu\u00f1oz Azucena, Sepulcre Maria P, Renshaw Stephen A, Meseguer Jos\u00e9, Mulero Victoriano", "reference": { "type": "PubMed", "id": "18802111", "url": "https://pubmed.ncbi.nlm.nih.gov/18802111" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4W898-1", "protein_name": "Lymphotoxin-alpha", "gene_name": "tnfb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B2L3-1", "protein_name": "Tumor necrosis factor receptor superfamily member 1B isoform X1", "gene_name": "tnfrsf1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z2C4-1", "protein_name": "Interleukin-12 subunit alpha isoform X1", "gene_name": "il12a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8E6E3-1", "protein_name": "Interferon phi 3 precursor", "gene_name": "ifnphi3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TNT1-1", "protein_name": "Vascular cell adhesion protein 1 isoform X1", "gene_name": "sc:d0202; si:ch211-74m13.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4W898", "url": "https://www.uniprot.org/uniprotkb/Q4W898" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18802111", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of lipopolysaccharide (LPS) recognition and signaling: fish TLR4 does not recognize LPS and negatively regulates NF-kappaB activation.", "journal": "J. Immunol.", "date": "2009", "authors": "Sepulcre Mar\u00eda P, Alcaraz-P\u00e9rez Francisca, L\u00f3pez-Mu\u00f1oz Azucena, Roca Francisco J, Meseguer Jos\u00e9, Cayuela Mar\u00eda L, Mulero Victoriano", "reference": { "type": "PubMed", "id": "19201835", "url": "https://pubmed.ncbi.nlm.nih.gov/19201835" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4W898-1", "protein_name": "Lymphotoxin-alpha", "gene_name": "tnfb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z2C4-1", "protein_name": "Interleukin-12 subunit alpha isoform X1", "gene_name": "il12a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4W898", "url": "https://www.uniprot.org/uniprotkb/Q4W898" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19201835", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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