[ { "title": "Nuclear translocation of extradenticle requires homothorax, which encodes an extradenticle-related homeodomain protein.", "journal": "Cell", "date": "1997-10-17", "authors": "Rieckhof G E, Casares F, Ryoo H D, Abu-Shaar M, Mann R S", "reference": { "type": "PubMed", "id": "9346235", "url": "https://pubmed.ncbi.nlm.nih.gov/9346235" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O46339-1", "protein_name": "Homeobox protein homothorax", "gene_name": "hth", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P40427-1", "protein_name": "Homeobox protein extradenticle", "gene_name": "exd", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O46339", "url": "https://www.uniprot.org/uniprotkb/O46339" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9346235", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Homothorax homeoprotein activates the nuclear localization of another homeoprotein, extradenticle, and suppresses eye development in Drosophila.", "journal": "Genes & development", "date": "1998-02-01", "authors": "Pai C Y, Kuo T S, Jaw T J, Kurant E, Chen C T, Bessarab D A, Salzberg A, Sun Y H", "reference": { "type": "PubMed", "id": "9450936", "url": "https://pubmed.ncbi.nlm.nih.gov/9450936" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O46339-1", "protein_name": "Homeobox protein homothorax", "gene_name": "hth", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P40427-1", "protein_name": "Homeobox protein extradenticle", "gene_name": "exd", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O46339", "url": "https://www.uniprot.org/uniprotkb/O46339" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9450936", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"uniprot_canonical_ac": "O46339-1", "protein_name": "Homeobox protein homothorax", "gene_name": "hth", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P40427-1", "protein_name": "Homeobox protein extradenticle", "gene_name": "exd", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O46339", "url": "https://www.uniprot.org/uniprotkb/O46339" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9463350", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] 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Loss of localization to apical membranes. Not necessary to modify src-induced overgrowth.", "evidence": [ { "database": "UniProtKB", "id": "O61722", "url": "https://www.uniprot.org/uniprotkb/O61722" }, { "database": "PubMed", "id": "23577193", "url": "https://pubmed.ncbi.nlm.nih.gov/23577193" } ], "uniprot_canonical_ac": "O61722-1" } ], "record_id": "pubmed.23577193", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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disrupting formation of the heterodimer: a basis for circadian transcription.", "journal": "Molecular and cellular biology", "date": "1999", "authors": "Lee C, Bae K, Edery I", "reference": { "type": "PubMed", "id": "10409723", "url": "https://pubmed.ncbi.nlm.nih.gov/10409723" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; Vrille, isoform D; Vrille, isoform F", "gene_name": "vri", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "dCLOCK is present in limiting amounts and likely mediates daily interactions between the dCLOCK-CYC transcription factor and the PER-TIM complex.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2000", "authors": "Bae K, Lee C, Hardin PE, Edery I", "reference": { "type": "PubMed", "id": "10684876", "url": "https://pubmed.ncbi.nlm.nih.gov/10684876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian 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}, { "uniprot_canonical_ac": "P08182-1", "protein_name": "Casein kinase II subunit beta", "gene_name": "CkIIbeta", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O77059-1", "protein_name": "Cryptochrome-1", "gene_name": "cry", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P08646-1", "protein_name": "Ras-like protein 1", "gene_name": "Ras85D", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P18431-2", "protein_name": "Protein kinase shaggy", "gene_name": "sgg", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; Vrille, isoform D; Vrille, isoform F", "gene_name": "vri", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P23696-1", "protein_name": "Serine/threonine-protein phosphatase PP2A", "gene_name": "mts", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P54367-1", "protein_name": "Casein kinase I isoform alpha", "gene_name": "CkIalpha", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24324-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase dSOR1", "gene_name": "Dsor1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8ML92-1", "protein_name": "Protein aveugle", "gene_name": "ave", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y1T2-1", "protein_name": "Adenomatous polyposis coli 2, isoform A; Adenomatous polyposis coli 2, isoform C", "gene_name": "Apc2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9V9J3-1", "protein_name": "Tyrosine-protein kinase Src42A", "gene_name": "Src42A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein timeless", "gene_name": "tim", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.11430804", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "VRILLE feeds back to control circadian transcription of Clock in the Drosophila circadian oscillator.", "journal": "Neuron", "date": "2003", "authors": "Glossop NR, Houl JH, Zheng H, Ng FS, Dudek SM, Hardin PE", "reference": { "type": "PubMed", "id": "12546820", "url": "https://pubmed.ncbi.nlm.nih.gov/12546820" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; Vrille, isoform D; Vrille, isoform F", "gene_name": "vri", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein timeless", "gene_name": "tim", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.12546820", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "vrille, Pdp1, and dClock form a second feedback loop in the Drosophila circadian clock.", "journal": "Cell", "date": "2003", "authors": "Cyran SA, Buchsbaum AM, Reddy KL, Lin MC, Glossop NR, Hardin PE, Young MW, Storti RV, Blau J", "reference": { "type": "PubMed", "id": "12581523", "url": "https://pubmed.ncbi.nlm.nih.gov/12581523" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; Vrille, isoform D; Vrille, isoform F", "gene_name": "vri", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein timeless", "gene_name": "tim", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.12581523", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Posttranslational regulation of Drosophila PERIOD protein by protein phosphatase 2A.", "journal": "Cell", "date": "2004", "authors": "Sathyanarayanan S, Zheng X, Xiao R, Sehgal A", "reference": { "type": "PubMed", "id": "14980226", "url": "https://pubmed.ncbi.nlm.nih.gov/14980226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein 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"gene_name": "wdb", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein timeless", "gene_name": "tim", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.14980226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An overview of the basic helix-loop-helix proteins.", "journal": "Genome biology", "date": "2004", "authors": "Jones S", "reference": { "type": "PubMed", "id": "15186484", "url": "https://pubmed.ncbi.nlm.nih.gov/15186484" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila 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"protein_name": "Dual specificity mitogen-activated protein kinase kinase dSOR1", "gene_name": "Dsor1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8ML92-1", "protein_name": "Protein aveugle", "gene_name": "ave", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y1T2-1", "protein_name": "Adenomatous polyposis coli 2, isoform A; Adenomatous polyposis coli 2, isoform C", "gene_name": "Apc2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9V9J3-1", "protein_name": "Tyrosine-protein kinase Src42A", "gene_name": "Src42A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein timeless", "gene_name": "tim", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], 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biology", "date": "2007", "authors": "Kim EY, Ko HW, Yu W, Hardin PE, Edery I", "reference": { "type": "PubMed", "id": "17452449", "url": "https://pubmed.ncbi.nlm.nih.gov/17452449" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; Vrille, isoform D; Vrille, isoform F", "gene_name": "vri", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Clockwork orange encodes a transcriptional repressor important for circadian-clock amplitude in Drosophila.", "journal": "Current biology : CB", "date": "2007", "authors": "Lim C, Chung BY, Pitman JL, McGill JJ, Pradhan S, Lee J, Keegan KP, Choe J, Allada R", "reference": { "type": "PubMed", "id": "17555964", "url": "https://pubmed.ncbi.nlm.nih.gov/17555964" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VGZ5-1", "protein_name": "Transcription factor cwo", "gene_name": "cwo", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Post-translational regulation of the Drosophila circadian clock requires protein phosphatase 1 (PP1).", "journal": "Genes & development", "date": "2007", "authors": "Fang Y, Sathyanarayanan S, Sehgal A", "reference": { "type": "PubMed", "id": "17575052", "url": "https://pubmed.ncbi.nlm.nih.gov/17575052" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P36872-1", "protein_name": "Protein phosphatase PP2A 55 kDa regulatory subunit", "gene_name": "tws", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P48462-1", "protein_name": "Serine/threonine-protein phosphatase beta isoform", "gene_name": "flw", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P36179-1", "protein_name": "Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit", 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"2009", "authors": "Zheng X, Koh K, Sowcik M, Smith CJ, Chen D, Wu MN, Sehgal A", "reference": { "type": "PubMed", "id": "19726650", "url": "https://pubmed.ncbi.nlm.nih.gov/19726650" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; Vrille, isoform D; Vrille, isoform F", "gene_name": "vri", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamic PER repression mechanisms in the Drosophila circadian clock: from on-DNA to off-DNA.", "journal": "Genes & development", "date": "2010", "authors": "Menet JS, Abruzzi KC, Desrochers J, Rodriguez J, Rosbash M", "reference": { "type": "PubMed", "id": "20159956", "url": "https://pubmed.ncbi.nlm.nih.gov/20159956" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian 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"tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.8596938", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A light-entrainment mechanism for the Drosophila circadian clock.", "journal": "Nature", "date": "1996", "authors": "Zeng H, Qian Z, Myers MP, Rosbash M", "reference": { "type": "PubMed", "id": "8600384", "url": "https://pubmed.ncbi.nlm.nih.gov/8600384" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P36872-1", "protein_name": "Protein phosphatase PP2A 55 kDa regulatory subunit", "gene_name": "tws", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P08181-1", "protein_name": "Casein kinase II subunit alpha", "gene_name": "CkIIalpha", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P36179-1", "protein_name": "Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit", "gene_name": "Pp2A-29B", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P11346-1", "protein_name": "Raf homolog serine/threonine-protein kinase Raf", "gene_name": "Raf", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P92177-3", "protein_name": "14-3-3 protein epsilon", "gene_name": "14-3-3epsilon", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9V407-1", "protein_name": "Axin", "gene_name": "Axn", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P08182-1", "protein_name": "Casein kinase II subunit beta", "gene_name": "CkIIbeta", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O77059-1", "protein_name": "Cryptochrome-1", "gene_name": "cry", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P08646-1", "protein_name": "Ras-like protein 1", "gene_name": "Ras85D", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P18431-2", "protein_name": "Protein kinase shaggy", "gene_name": "sgg", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; Vrille, isoform D; Vrille, isoform F", "gene_name": "vri", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P23696-1", "protein_name": "Serine/threonine-protein phosphatase PP2A", "gene_name": "mts", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P54367-1", "protein_name": "Casein kinase I isoform alpha", "gene_name": "CkIalpha", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24324-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase dSOR1", "gene_name": "Dsor1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8ML92-1", "protein_name": "Protein aveugle", "gene_name": "ave", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y1T2-1", "protein_name": "Adenomatous polyposis coli 2, isoform A; Adenomatous polyposis coli 2, isoform C", "gene_name": "Apc2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9V9J3-1", "protein_name": "Tyrosine-protein kinase Src42A", "gene_name": "Src42A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49021-4", "protein_name": "Protein timeless", "gene_name": "tim", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.8600384", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Closing the circadian loop: CLOCK-induced transcription of its own inhibitors per and tim.", "journal": "Science", "date": "1998", "authors": "Darlington T K, Wager-Smith K, Ceriani M F, Staknis D, Gekakis N, Steeves T D, Weitz C J, Takahashi J S, Kay S A", "reference": { "type": "PubMed", "id": "9616122", "url": "https://pubmed.ncbi.nlm.nih.gov/9616122" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9616122", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mutant Drosophila homolog of mammalian Clock disrupts circadian rhythms and transcription of period and timeless.", "journal": "Cell", "date": "1998-05-29", "authors": "Allada R, White N E, So W V, Hall J C, Rosbash M", "reference": { "type": "PubMed", "id": "9630223", "url": "https://pubmed.ncbi.nlm.nih.gov/9630223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9630223", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Circadian regulation of a Drosophila homolog of the mammalian clock gene: PER and TIM function as positive regulators.", "journal": "Mol. Cell. Biol.", "date": "1998", "authors": "Bae K, Lee C, Sidote D, Chuang K Y, Edery I", "reference": { "type": "PubMed", "id": "9742131", "url": "https://pubmed.ncbi.nlm.nih.gov/9742131" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O61735", "url": "https://www.uniprot.org/uniprotkb/O61735" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9742131", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Drosophila CLOCK protein undergoes daily rhythms in abundance, phosphorylation, and interactions with the PER-TIM complex.", "journal": "Neuron", "date": "1998", "authors": "Lee C, Bae K, Edery I", "reference": { "type": "PubMed", "id": "9808471", "url": "https://pubmed.ncbi.nlm.nih.gov/9808471" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O61735-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "Clk", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61734-1", "protein_name": "Protein cycle", "gene_name": "cyc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P07663-1", "protein_name": "Period circadian protein", "gene_name": "per", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMS4-1", "protein_name": "Vrille, isoform A; 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "okra and spindle-B encode components of the RAD52 DNA repair pathway and affect meiosis and patterning in Drosophila oogenesis.", "journal": "Genes & development", "date": "1998-09-01", "authors": "Ghabrial A, Ray R P, Sch\u00fcpbach T", "reference": { "type": "PubMed", "id": "9732269", "url": "https://pubmed.ncbi.nlm.nih.gov/9732269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76460-1", "protein_name": "DNA repair and recombination protein RAD54-like", "gene_name": "okr", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76460", "url": "https://www.uniprot.org/uniprotkb/O76460" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9732269", "abstract": "", "glycosylation": [], "mutagenesis": [], 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"Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery.", "journal": "Science (New York, N.Y.)", "date": "2004-01-30", "authors": "Pal-Bhadra Manika, Leibovitch Boris A, Gandhi Sumit G, Chikka Madhusudana Rao, Rao Madhusudana, Bhadra Utpal, Birchler James A, Elgin Sarah C R", "reference": { "type": "PubMed", "id": "14752161", "url": "https://pubmed.ncbi.nlm.nih.gov/14752161" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VF26-1", "protein_name": "Probable ATP-dependent RNA helicase spindle-E", "gene_name": "spn-E", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", 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"2004-03-19", "authors": "Cook Heather A, Koppetsch Birgit S, Wu Jing, Theurkauf William E", "reference": { "type": "PubMed", "id": "15035984", "url": "https://pubmed.ncbi.nlm.nih.gov/15035984" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q6J5K9-1", "protein_name": "5'-3' RNA helicase armi", "gene_name": "armi", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.15035984", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Female sterile mutations on the second chromosome of Drosophila melanogaster. II. Mutations blocking oogenesis or altering egg morphology.", "journal": "Genetics", "date": "1991-12", "authors": "Sch\u00fcpbach T, Wieschaus E", "reference": { "type": "PubMed", "id": "1783295", "url": "https://pubmed.ncbi.nlm.nih.gov/1783295" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.1783295", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad.", "journal": "RNA (New York, N.Y.)", "date": "2007-11", "authors": "Nishida Kazumichi M, Saito Kuniaki, Mori Tomoko, Kawamura Yoshinori, Nagami-Okada Tomoko, Inagaki Sachi, Siomi Haruhiko, Siomi Mikiko C", "reference": { "type": "PubMed", "id": "17872506", "url": "https://pubmed.ncbi.nlm.nih.gov/17872506" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.17872506", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional involvement of Tudor and dPRMT5 in the piRNA processing pathway in Drosophila germlines.", "journal": "The EMBO journal", "date": "2009", "authors": "Nishida KM, Okada TN, Kawamura T, Mituyama T, Kawamura Y, Inagaki S, Huang H, Chen D, Kodama T, Siomi H, Siomi MC", "reference": { "type": "PubMed", "id": "19959991", "url": "https://pubmed.ncbi.nlm.nih.gov/19959991" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P25823-1", "protein_name": "Protein tudor", "gene_name": "tud", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9U6Y9-1", "protein_name": "Protein arginine N-methyltransferase 5", "gene_name": "csul", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7PLK0-1", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for methylarginine-dependent recognition of Aubergine by Tudor.", "journal": "Genes & development", "date": "2010", "authors": "Liu H, Wang JY, Huang Y, Li Z, Gong W, Lehmann R, Xu RM", "reference": { "type": "PubMed", "id": "20713507", "url": "https://pubmed.ncbi.nlm.nih.gov/20713507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.20713507", "abstract": "", 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R", "reference": { "type": "PubMed", "id": "20937269", "url": "https://pubmed.ncbi.nlm.nih.gov/20937269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.20937269", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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[ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.20980675", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PAPI, a novel TUDOR-domain protein, complexes with AGO3, ME31B and TRAL in the nuage to silence transposition.", "journal": "Development", "date": "2011", "authors": "Liu L, Qi H, Wang J, Lin H", "reference": { "type": "PubMed", "id": "21447556", "url": "https://pubmed.ncbi.nlm.nih.gov/21447556" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P23128-1", "protein_name": "ATP-dependent RNA helicase me31b", "gene_name": "me31B", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7KN62-1", "protein_name": "Transitional endoplasmic reticulum ATPase TER94", "gene_name": "TER94", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7PLK0-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VKM1-1", "protein_name": "Protein piwi", "gene_name": "piwi", "tax_name": 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Genet.", "date": "2011", "authors": "Nagao Akihiro, Sato Kaoru, Nishida Kazumichi M, Siomi Haruhiko, Siomi Mikiko C", "reference": { "type": "PubMed", "id": "22303351", "url": "https://pubmed.ncbi.nlm.nih.gov/22303351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P25823-1", "protein_name": "Protein tudor", "gene_name": "tud", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "A1ZAC4-1", "protein_name": "Tudor domain-containing protein krimp", "gene_name": "krimp", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7PLK0-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Transposition-driven genomic heterogeneity in the Drosophila brain.", "journal": "Science (New York, N.Y.)", "date": "2013-04-05", "authors": "Perrat Paola N, DasGupta Shamik, Wang Jie, Theurkauf William, Weng Zhiping, Rosbash Michael, Waddell Scott", "reference": { "type": "PubMed", "id": "23559253", "url": "https://pubmed.ncbi.nlm.nih.gov/23559253" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7PLK0-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Krimper Enforces an Antisense Bias on piRNA Pools by Binding AGO3 in the Drosophila Germline.", "journal": "Molecular cell", "date": "2015-08-20", "authors": "Sato Kaoru, Iwasaki Yuka W, Shibuya Aoi, Carninci Piero, Tsuchizawa Yuuta, Ishizu Hirotsugu, Siomi Mikiko C, Siomi Haruhiko", "reference": { "type": "PubMed", "id": "26212455", "url": "https://pubmed.ncbi.nlm.nih.gov/26212455" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P25823-1", "protein_name": "Protein tudor", "gene_name": "tud", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "A1ZAC4-1", "protein_name": "Tudor domain-containing protein krimp", "gene_name": "krimp", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7PLK0-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VKM1-1", "protein_name": "Protein piwi", "gene_name": "piwi", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": 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0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Mechanisms to Form a Ping-Pong Complex Assembled by Krimper.", "journal": "Molecular cell", "date": "2015-08-20", "authors": "Webster Alexandre, Li Sisi, Hur Junho K, Wachsmuth Malte, Bois Justin S, Perkins Edward M, Patel Dinshaw J, Aravin Alexei A", "reference": { "type": "PubMed", "id": "26295961", "url": "https://pubmed.ncbi.nlm.nih.gov/26295961" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P25823-1", "protein_name": "Protein tudor", "gene_name": "tud", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "A1ZAC4-1", "protein_name": "Tudor domain-containing protein krimp", "gene_name": "krimp", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P09052-1", "protein_name": "ATP-dependent RNA helicase vasa", "gene_name": "vas", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VKD7-1", "protein_name": "Mitochondrial cardiolipin hydrolase", "gene_name": "zuc", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7PLK0-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VF26-1", "protein_name": "Probable ATP-dependent RNA helicase spindle-E", "gene_name": "spn-E", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "mutagenesis": [ { "start_pos": 11, "end_pos": 26, "sequence_org": "RGRGRGRKPNNVEANR", "sequence_mut": "KGKGKGKKPNNVEANK", "comment": "Lacks symmetric dimethylated arginine modification but does not affect ability to recruit csul/PRMT5. Abrogates interaction with krimp and tud. No effect on slicer activity. Recruited to nuage but is less stably associated than wild-type and more readily diffuses into the cytosol. Fails to localize to the pole plasm. Unable to rescue transposon derepression and sterility phenotypes in a mutant model.", "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" }, { "database": "PubMed", "id": "26295961", "url": "https://pubmed.ncbi.nlm.nih.gov/26295961" }, { "database": "PubMed", "id": "34210982", "url": "https://pubmed.ncbi.nlm.nih.gov/34210982" } ], "uniprot_canonical_ac": "O76922-1" }, { "start_pos": 568, "end_pos": 572, "sequence_org": "YSCIK", "sequence_mut": "LSCIE", "comment": "Abrogates piRNA binding. Prevents recruitment of csul/PRMT5 and reduces the level of symmetrical methylation of arginine PTM. Prevents localization to the nuage. Does not affect binding to krimp. Abrogates interaction with tud. Fails to localize to the pole plasm.", "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" }, { "database": "PubMed", "id": "26295961", "url": "https://pubmed.ncbi.nlm.nih.gov/26295961" }, { "database": "PubMed", "id": "34210982", "url": "https://pubmed.ncbi.nlm.nih.gov/34210982" } ], "uniprot_canonical_ac": "O76922-1" }, { "start_pos": 579, "end_pos": 583, "sequence_org": "YAAIK", "sequence_mut": "LAAIE", "comment": "Abrogates piRNA binding. Does not affect binding to krimp. Reduces mobility within the nuage, probably due to association with krimp.", "evidence": [ { "database": "UniProtKB", "id": "Q7PLK0", "url": "https://www.uniprot.org/uniprotkb/Q7PLK0" }, { "database": "PubMed", "id": "26295961", "url": "https://pubmed.ncbi.nlm.nih.gov/26295961" } ], "uniprot_canonical_ac": "Q7PLK0-1" }, { "start_pos": 68, "end_pos": 72, "sequence_org": "RGRAR", "sequence_mut": "KGKAK", "comment": "Abolishes binding to papi. Does not affect binding to krimp.", "evidence": [ { "database": "UniProtKB", "id": "Q7PLK0", "url": "https://www.uniprot.org/uniprotkb/Q7PLK0" }, { "database": "PubMed", "id": "21447556", "url": "https://pubmed.ncbi.nlm.nih.gov/21447556" }, { "database": "PubMed", "id": "26295961", "url": "https://pubmed.ncbi.nlm.nih.gov/26295961" } ], "uniprot_canonical_ac": "Q7PLK0-1" } ], "record_id": "pubmed.26295961", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An in vivo proteomic analysis of the Me31B interactome in Drosophila germ granules.", "journal": "FEBS Lett.", "date": "2017", "authors": "DeHaan H, McCambridge A, Armstrong B, Cruse C, Solanki D, Trinidad JC, Arkov AL, Gao M", "reference": { "type": "PubMed", "id": "28945271", "url": "https://pubmed.ncbi.nlm.nih.gov/28945271" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P25823-1", "protein_name": "Protein tudor", "gene_name": "tud", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P23128-1", "protein_name": "ATP-dependent RNA helicase me31b", "gene_name": "me31B", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P09052-1", "protein_name": "ATP-dependent RNA helicase vasa", "gene_name": "vas", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.28945271", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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Abrogates interaction with krimp and tud. No effect on slicer activity. Recruited to nuage but is less stably associated than wild-type and more readily diffuses into the cytosol. Fails to localize to the pole plasm. Unable to rescue transposon derepression and sterility phenotypes in a mutant model.", "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" }, { "database": "PubMed", "id": "26295961", "url": "https://pubmed.ncbi.nlm.nih.gov/26295961" }, { "database": "PubMed", "id": "34210982", "url": "https://pubmed.ncbi.nlm.nih.gov/34210982" } ], "uniprot_canonical_ac": "O76922-1" }, { "start_pos": 345, "end_pos": 346, "sequence_org": "YY", "sequence_mut": "AA", "comment": "Abrogates symmetrical dimethylation of arginine modification, probably due to incomplete piRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" }, { "database": "PubMed", "id": "34210982", "url": "https://pubmed.ncbi.nlm.nih.gov/34210982" } ], "uniprot_canonical_ac": "O76922-1" }, { "start_pos": 568, "end_pos": 572, "sequence_org": "YSCIK", "sequence_mut": "LSCIE", "comment": "Abrogates piRNA binding. Prevents recruitment of csul/PRMT5 and reduces the level of symmetrical methylation of arginine PTM. Prevents localization to the nuage. Does not affect binding to krimp. Abrogates interaction with tud. Fails to localize to the pole plasm.", "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" }, { "database": "PubMed", "id": "26295961", "url": "https://pubmed.ncbi.nlm.nih.gov/26295961" }, { "database": "PubMed", "id": "34210982", "url": "https://pubmed.ncbi.nlm.nih.gov/34210982" } ], "uniprot_canonical_ac": "O76922-1" } ], "record_id": "pubmed.34210982", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "aubergine enhances oskar translation in the Drosophila ovary.", "journal": "Development (Cambridge, England)", "date": "1996-05", "authors": "Wilson J E, Connell J E, Macdonald P M", "reference": { "type": "PubMed", "id": "8625849", "url": "https://pubmed.ncbi.nlm.nih.gov/8625849" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.8625849", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Gen. Genet.", "date": "1996", "authors": "Schmidt A, Hollmann M, Sch\u00e4fer U", "reference": { "type": "PubMed", "id": "8676882", "url": "https://pubmed.ncbi.nlm.nih.gov/8676882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76922-1", "protein_name": "Protein aubergine", "gene_name": "aub", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P50882-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RpL9", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "O76922", "url": "https://www.uniprot.org/uniprotkb/O76922" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.8676882", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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protein.", "journal": "Development", "date": "2001", "authors": "Halder G, Carroll S B", "reference": { "type": "PubMed", "id": "11546746", "url": "https://pubmed.ncbi.nlm.nih.gov/11546746" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q26366-1", "protein_name": "Protein vestigial", "gene_name": "vg", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P30052-1", "protein_name": "Protein scalloped", "gene_name": "sd", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q26366", "url": "https://www.uniprot.org/uniprotkb/Q26366" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.11546746", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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expression in Drosophila.", "journal": "Genes & development", "date": "1998-12-15", "authors": "Halder G, Polaczyk P, Kraus M E, Hudson A, Kim J, Laughon A, Carroll S", "reference": { "type": "PubMed", "id": "9869643", "url": "https://pubmed.ncbi.nlm.nih.gov/9869643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q26366-1", "protein_name": "Protein vestigial", "gene_name": "vg", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P30052-1", "protein_name": "Protein scalloped", "gene_name": "sd", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "Q26366", "url": "https://www.uniprot.org/uniprotkb/Q26366" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.9869643", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"protein_name": "Casein kinase II subunit beta", "gene_name": "CkIIbeta", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O16844-1", "protein_name": "Kinesin-like protein costa", "gene_name": "cos", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P19538-1", "protein_name": "Transcriptional activator cubitus interruptus", "gene_name": "ci", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P12370-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit 1", "gene_name": "Pka-C1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P18431-2", "protein_name": "Protein kinase shaggy", "gene_name": "sgg", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P23696-1", "protein_name": "Serine/threonine-protein phosphatase PP2A", "gene_name": "mts", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P54367-1", "protein_name": "Casein kinase I isoform alpha", "gene_name": "CkIalpha", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24324-1", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The repressor and activator forms of Cubitus interruptus control Hedgehog target genes through common generic gli-binding sites.", "journal": "Development (Cambridge, England)", "date": "2000", "authors": "Muller B, Basler K", "reference": { "type": "PubMed", "id": "10862738", "url": "https://pubmed.ncbi.nlm.nih.gov/10862738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P23647-1", "protein_name": "Serine/threonine-protein kinase fused", "gene_name": "fu", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O16844-1", "protein_name": "Kinesin-like protein costa", "gene_name": "cos", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P19538-1", "protein_name": "Transcriptional activator cubitus interruptus", "gene_name": "ci", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P91682-1", "protein_name": "Protein smoothened", "gene_name": "smo", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Suppressor of fused opposes hedgehog signal transduction by impeding nuclear accumulation of the activator form of Cubitus interruptus.", "journal": "Development (Cambridge, England)", "date": "2000", "authors": "Methot N, Basler K", "reference": { "type": "PubMed", "id": "10952898", "url": "https://pubmed.ncbi.nlm.nih.gov/10952898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P23647-1", "protein_name": "Serine/threonine-protein kinase fused", "gene_name": "fu", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O16844-1", "protein_name": "Kinesin-like protein costa", "gene_name": "cos", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P19538-1", "protein_name": "Transcriptional activator cubitus interruptus", "gene_name": "ci", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P91682-1", 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"uniprot_canonical_ac": "P54367-1", "protein_name": "Casein kinase I isoform alpha", "gene_name": "CkIalpha", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q24324-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase dSOR1", "gene_name": "Dsor1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8ML92-1", "protein_name": "Protein aveugle", "gene_name": "ave", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y1T2-1", "protein_name": "Adenomatous polyposis coli 2, isoform A; Adenomatous polyposis coli 2, isoform C", "gene_name": "Apc2", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "P23647", "url": "https://www.uniprot.org/uniprotkb/P23647" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.11912487", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hedgehog signal transduction proteins: contacts of the Fused kinase and Ci transcription factor with the kinesin-related protein Costal2.", "journal": "BMC developmental biology", "date": "2002", "authors": "Monnier V, Ho KS, Sanial M, Scott MP, Plessis A", "reference": { "type": "PubMed", "id": "11914126", "url": "https://pubmed.ncbi.nlm.nih.gov/11914126" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P23647-1", "protein_name": "Serine/threonine-protein kinase fused", "gene_name": "fu", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76324-1", "protein_name": "Discs overgrown protein kinase", "gene_name": "dco", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O16844-1", "protein_name": "Kinesin-like protein costa", "gene_name": "cos", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P19538-1", "protein_name": "Transcriptional activator cubitus interruptus", "gene_name": "ci", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P12370-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit 1", "gene_name": "Pka-C1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P18431-2", "protein_name": "Protein kinase shaggy", "gene_name": "sgg", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P54367-1", "protein_name": "Casein kinase I isoform alpha", "gene_name": "CkIalpha", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "P23647", "url": "https://www.uniprot.org/uniprotkb/P23647" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.11914126", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hedgehog-stimulated phosphorylation of the kinesin-related protein Costal2 is mediated by the serine/threonine kinase fused.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Nybakken KE, Turck CW, Robbins DJ, Bishop JM", "reference": { "type": "PubMed", "id": "11934882", "url": "https://pubmed.ncbi.nlm.nih.gov/11934882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P23647-1", "protein_name": "Serine/threonine-protein kinase fused", "gene_name": "fu", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O16844-1", "protein_name": "Kinesin-like protein costa", "gene_name": "cos", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P19538-1", "protein_name": "Transcriptional activator cubitus interruptus", "gene_name": "ci", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P91682-1", "protein_name": "Protein smoothened", "gene_name": "smo", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "P23647", "url": "https://www.uniprot.org/uniprotkb/P23647" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "phosphorylation": [ { "start_pos": 572, "end_pos": 572, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O16844", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O16844" }, { "database": "PubMed", "id": "11934882", "url": "https://pubmed.ncbi.nlm.nih.gov/11934882" }, { "database": "PubMed", "id": "17671093", "url": "https://pubmed.ncbi.nlm.nih.gov/17671093" }, { "database": "PubMed", "id": "20435030", "url": "https://pubmed.ncbi.nlm.nih.gov/20435030" }, { "database": "PubMed", 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