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Cell. Neurosci.", "date": "2001", "authors": "Pierce K D, Handford C A, Morris R, Vafa B, Dennis J A, Healy P J, Schofield P R", "reference": { "type": "PubMed", "id": "11178872", "url": "https://pubmed.ncbi.nlm.nih.gov/11178872" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9GJS9-1", "protein_name": "Glycine receptor subunit beta", "gene_name": "GLRB", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P57695-1", "protein_name": "Glycine receptor subunit alpha-1", "gene_name": "GLRA1; GLRA2", "tax_name": "Bovine" } ], "species": [ { "name": "Bos taurus", "taxid": 9913, "evidence": [ { "database": "UniProtKB", "id": "Q9GJS9", "url": "https://www.uniprot.org/uniprotkb/Q9GJS9" } ], "common_name": "Bovine", "glygen_name": "Bovine", "reference_species": "Bos taurus [9913]" } ], "record_id": "pubmed.11178872", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Anim. 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Genome Res.", "date": "2009", "authors": "Bratu\u015b A, S\u0142ota E", "reference": { "type": "PubMed", "id": "20016168", "url": "https://pubmed.ncbi.nlm.nih.gov/20016168" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "C0LZJ1-1", "protein_name": "Doublesex and mab-3 related transcription factor 1", "gene_name": "DMRT1", "tax_name": "Bovine" } ], "species": [ { "name": "Bos taurus", "taxid": 9913, "evidence": [ { "database": "UniProtKB", "id": "C0LZJ1", "url": "https://www.uniprot.org/uniprotkb/C0LZJ1" } ], "common_name": "Bovine", "glygen_name": "Bovine", "reference_species": "Bos taurus [9913]" } ], "record_id": "pubmed.20016168", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cooperation of MICAL-L1, syndapin2, and phosphatidic acid in tubular recycling endosome biogenesis.", "journal": "Mol. 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Cell", "date": "2013", "authors": "Giridharan SS, Cai B, Vitale N, Naslavsky N, Caplan S", "reference": { "type": "PubMed", "id": "23596323", "url": "https://pubmed.ncbi.nlm.nih.gov/23596323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E1BBG2-1", "protein_name": "MICAL-like protein 1", "gene_name": "MICALL1", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9UNF0-1", "protein_name": "Protein kinase C and casein kinase substrate in neurons protein 2", "gene_name": "PACSIN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5E9R3-1", "protein_name": "EH domain-containing protein 1", "gene_name": "EHD1", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9H4M9-1", "protein_name": "EH domain-containing protein 1", "gene_name": "EHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3F8-1", "protein_name": "MICAL-like protein 1", "gene_name": "MICALL1", "tax_name": "Human" } ], "species": [ { "name": "Bos taurus", "taxid": 9913, "evidence": [ { "database": "UniProtKB", "id": "E1BBG2", "url": "https://www.uniprot.org/uniprotkb/E1BBG2" } ], "common_name": "Bovine", "glygen_name": "Bovine", "reference_species": "Bos taurus [9913]" } ], "mutagenesis": [ { "start_pos": 385, "end_pos": 387, "sequence_org": "PLP", "sequence_mut": "ALA", "comment": "No effect on interaction with PACSIN2. 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kinase-1 (PERK1) gene is rapidly induced by wounding.", "journal": "Plant Mol. Biol.", "date": "2002", "authors": "Silva Nancy F, Goring Daphne R", "reference": { "type": "PubMed", "id": "12374299", "url": "https://pubmed.ncbi.nlm.nih.gov/12374299" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LS95-1", "protein_name": "Putative proline-rich receptor-like protein kinase PERK6", "gene_name": "PERK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1PEM5-1", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "gene_name": "PERK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65530-1", "protein_name": "Proline-rich receptor-like protein kinase PERK14", "gene_name": "PERK14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C660-1", "protein_name": "Proline-rich receptor-like protein kinase PERK10", "gene_name": "PERK10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK03-1", "protein_name": "Proline-rich receptor-like protein kinase PERK2", "gene_name": 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"Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SX31-1", "protein_name": "Proline-rich receptor-like protein kinase PERK9", "gene_name": "PERK9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUE0-1", "protein_name": "Proline-rich receptor-like protein kinase PERK12", "gene_name": "PERK12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZNQ8-1", "protein_name": "Proline-rich receptor-like protein kinase PERK4", "gene_name": "PERK4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LS95", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12374299", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"https://pubmed.ncbi.nlm.nih.gov/15653807" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LS95-1", "protein_name": "Putative proline-rich receptor-like protein kinase PERK6", "gene_name": "PERK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1PEM5-1", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "gene_name": "PERK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65530-1", "protein_name": "Proline-rich receptor-like protein kinase PERK14", "gene_name": "PERK14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C660-1", "protein_name": "Proline-rich receptor-like protein kinase PERK10", "gene_name": "PERK10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C821-1", "protein_name": "Proline-rich receptor-like protein kinase PERK15", "gene_name": "PERK15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK03-1", "protein_name": "Proline-rich receptor-like protein kinase PERK2", "gene_name": "PERK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGY7-1", "protein_name": "Putative proline-rich receptor-like protein kinase PERK11", "gene_name": "PERK11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XI96-1", "protein_name": "Proline-rich receptor-like protein kinase PERK7", "gene_name": "PERK7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAL8-1", "protein_name": "Proline-rich receptor-like protein kinase PERK13", "gene_name": "PERK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFW5-1", "protein_name": "Proline-rich receptor-like protein kinase PERK8", "gene_name": "PERK8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GX23-1", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "gene_name": "PERK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV48-1", "protein_name": "Proline-rich receptor-like protein kinase PERK1", "gene_name": "PERK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SX31-1", "protein_name": "Proline-rich receptor-like protein kinase PERK9", "gene_name": "PERK9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUE0-1", "protein_name": "Proline-rich receptor-like protein kinase PERK12", "gene_name": "PERK12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZNQ8-1", "protein_name": "Proline-rich receptor-like protein kinase PERK4", "gene_name": "PERK4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LS95", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15653807", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis.", "journal": "Plant Physiol.", "date": "2008", "authors": "Samuel Marcus A, Mudgil Yashwanti, Salt Jennifer N, Delmas Fr\u00e9d\u00e9ric, Ramachandran Shaliny, Chilelli Andrea, Goring Daphne R", "reference": { "type": "PubMed", "id": "18552232", "url": "https://pubmed.ncbi.nlm.nih.gov/18552232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LSA6-1", "protein_name": "U-box domain-containing protein 29", "gene_name": "PUB29", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93756-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1", "gene_name": "SD31", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64782-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29", "gene_name": "SD1-29; SD129", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJP6-1", "protein_name": "U-box domain-containing protein 38", "gene_name": "PUB38", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWZ5-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5", "gene_name": "SD25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ40-1", "protein_name": "U-box domain-containing protein 14", "gene_name": "PUB14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81833-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "gene_name": "SD11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81905-1", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "gene_name": "RK3; SD18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPZ9-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13", "gene_name": "SD113", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LM76-1", "protein_name": "U-box domain-containing protein 44", "gene_name": "PUB44", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C7G1-1", "protein_name": "U-box domain-containing protein 45", "gene_name": "PUB45", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39086-1", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "gene_name": "RK1; SD17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39203-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "gene_name": "RLK4; SD22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S972-1", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-6", "gene_name": "RK2; SD16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRT0-1", "protein_name": "U-box domain-containing protein 9", "gene_name": "PUB9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SNC6-1", "protein_name": "U-box domain-containing protein 13", "gene_name": "PUB13", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LSA6", "url": "https://www.uniprot.org/uniprotkb/Q9LSA6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 547, "end_pos": 547, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" }, { "database": "PubMed", "id": "18552232", "url": "https://pubmed.ncbi.nlm.nih.gov/18552232" } ], "uniprot_canonical_ac": "Q39086-1" } ], "record_id": "pubmed.18552232", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis FAMA controls the final proliferation/differentiation switch during stomatal development.", "journal": "The Plant cell", "date": "2006-10", "authors": "Ohashi-Ito Kyoko, Bergmann Dominique C", "reference": { "type": "PubMed", "id": "17088607", "url": "https://pubmed.ncbi.nlm.nih.gov/17088607" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LSL1-1", "protein_name": "Transcription factor bHLH93", "gene_name": "BHLH93", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56YJ8-1", "protein_name": "Transcription factor FAMA", "gene_name": "FAMA; FMA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56XR0-1", "protein_name": "Transcription factor bHLH71", "gene_name": "BHLH071; BHLH71", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LSL1", "url": "https://www.uniprot.org/uniprotkb/Q9LSL1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17088607", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins.", "journal": "The Plant cell", "date": "2009-12", "authors": "Wang Hao, Zhu Yongyou, Fujioka Shozo, Asami Tadao, Li Jiayang, Li Jianming", "reference": { "type": "PubMed", "id": "20023194", "url": "https://pubmed.ncbi.nlm.nih.gov/20023194" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LSN7-1", "protein_name": "Transcription factor bHLH147", "gene_name": "BHLH147", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80482-1", "protein_name": "Transcription factor bHLH149", "gene_name": "BHLH149", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8Z9-1", "protein_name": "Transcription factor bHLH148", "gene_name": "BHLH148", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39011-1", "protein_name": "Shaggy-related protein 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Biol.", "date": "2002", "authors": "Hagen Gretchen, Guilfoyle Tom", "reference": { "type": "PubMed", "id": "12036261", "url": "https://pubmed.ncbi.nlm.nih.gov/12036261" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LSQ4-1", "protein_name": "Indole-3-acetic acid-amido synthetase GH3.6", "gene_name": "GH3.6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJG1-1", "protein_name": "Auxin-responsive protein SAUR19", "gene_name": "SAUR19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJF6-1", "protein_name": "Auxin-responsive protein SAUR23", "gene_name": "SAUR23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJF7-1", "protein_name": "Auxin-responsive protein SAUR22", "gene_name": "SAUR22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJF9-1", "protein_name": "Auxin-responsive protein SAUR21", "gene_name": "SAUR21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK62-1", "protein_name": "Auxin-responsive protein SAUR24", "gene_name": "SAUR24", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ68-1", "protein_name": "Indole-3-acetic acid-amido synthetase GH3.4", "gene_name": "GH3.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22150-1", "protein_name": "Auxin-responsive protein SAUR36", "gene_name": "SAUR36", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGU2-1", "protein_name": "Auxin-responsive protein SAUR71", "gene_name": "SAUR71", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XID4-1", "protein_name": "Auxin response factor 12", "gene_name": "ARF12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WPR6-1", "protein_name": "Auxin-responsive protein SAUR65", "gene_name": "SAUR65", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0V7Z5-1", "protein_name": "Auxin-responsive protein SAUR64", "gene_name": "SAUR64", "tax_name": "Mouse-ear cress" }, { 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"SAUR67", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22190-1", "protein_name": "Indole-3-acetic acid-amido synthetase GH3.3", "gene_name": "GH3.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82243-1", "protein_name": "Putative indole-3-acetic acid-amido synthetase GH3.9", "gene_name": "GH3.9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82333-1", "protein_name": "Probable indole-3-acetic acid-amido synthetase GH3.1", "gene_name": "GH3.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84WU6-1", "protein_name": "Auxin response factor 17", "gene_name": "ARF17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7G0-1", "protein_name": "Auxin response factor 1", "gene_name": "ARF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GZ29-1", "protein_name": "Indole-3-acetic acid-amido synthetase GH3.15", "gene_name": "GH3.15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKN5-1", 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"species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LSQ4", "url": "https://www.uniprot.org/uniprotkb/Q9LSQ4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15659623", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cell wall-associated kinase (WAK) and WAK-like kinase gene family.", "journal": "Plant Physiol.", "date": "2002", "authors": "Verica Joseph A, He Zheng-Hui", "reference": { "type": "PubMed", "id": "12068092", "url": "https://pubmed.ncbi.nlm.nih.gov/12068092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LSV3-1", "protein_name": "Putative wall-associated receptor kinase-like 16", "gene_name": "WAKL16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZM4-1", "protein_name": "Wall-associated receptor kinase-like 20", "gene_name": "WAKL20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RY67-1", "protein_name": "Wall-associated receptor kinase-like 14", "gene_name": "WAKL14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMT9-1", "protein_name": "Putative wall-associated receptor kinase-like 13", 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"uniprot_canonical_ac": "Q9LMN8-1", "protein_name": "Wall-associated receptor kinase 3", "gene_name": "WAK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMN6-1", "protein_name": "Wall-associated receptor kinase 4", "gene_name": "WAK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMN7-1", "protein_name": "Wall-associated receptor kinase 5", "gene_name": "WAK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMP1-1", "protein_name": "Wall-associated receptor kinase 2", "gene_name": "WAK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LN59-1", "protein_name": "Putative wall-associated receptor kinase-like 11", "gene_name": "WAKL11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYF5-1", "protein_name": "Wall-associated receptor kinase-like 21", "gene_name": "WAKL21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WNY5-1", "protein_name": "Wall-associated receptor kinase-like 18", "gene_name": "WAKL18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39191-1", "protein_name": "Wall-associated receptor kinase 1", "gene_name": "WAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M092-1", "protein_name": "Wall-associated receptor kinase-like 17", "gene_name": "WAKL17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SA25-1", "protein_name": "Wall-associated receptor kinase-like 8", "gene_name": "WAKL8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9M1-1", "protein_name": "Wall-associated receptor kinase-like 5", "gene_name": "WAKL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9M2-1", "protein_name": "Wall-associated receptor kinase-like 4", "gene_name": "WAKL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9M3-1", "protein_name": "Wall-associated receptor kinase-like 3", "gene_name": "WAKL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9M5-1", "protein_name": "Wall-associated receptor kinase-like 1", "gene_name": "WAKL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LSV3", "url": "https://www.uniprot.org/uniprotkb/Q9LSV3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12068092", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis.", "journal": "Plant Physiol.", "date": "2003", "authors": "Zhao Dazhong, Ni Weimin, Feng Baomin, Han Tianfu, Petrasek Megan G, Ma Hong", "reference": { "type": "PubMed", "id": "12970487", "url": "https://pubmed.ncbi.nlm.nih.gov/12970487" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LSX8-1", "protein_name": "SKP1-like protein 10", "gene_name": "ASK10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSX9-1", "protein_name": "SKP1-like protein 9", "gene_name": "ASK9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY0-1", "protein_name": "SKP1-like protein 7", "gene_name": "ASK7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1PEL7-1", "protein_name": "SKP1-like protein 15", "gene_name": "ASK15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MQG7-1", "protein_name": "SKP1-like protein 20", "gene_name": "ASK20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65674-1", "protein_name": "SKP1-like protein 12", "gene_name": "ASK12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81055-1", "protein_name": "SKP1-like protein 16", "gene_name": "ASK16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81058-1", "protein_name": "SKP1-like protein 19", "gene_name": "ASK19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LF97-1", "protein_name": "SKP1-like protein 21", "gene_name": "ASK21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1X4-1", "protein_name": "SKP1-like protein 5", "gene_name": "ASK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1X5-1", "protein_name": "SKP1-like protein 13", "gene_name": "ASK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL65-1", "protein_name": "SKP1-like protein 17", "gene_name": "ASK17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL93-1", "protein_name": "SKP1-like protein 3", "gene_name": "ASK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SY65-1", "protein_name": "SKP1-like protein 18", "gene_name": "ASK18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1PEF6-1", "protein_name": "SKP1-like protein 6", "gene_name": "ASK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81057-1", "protein_name": "SKP1-like protein 14", "gene_name": "ASK14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNT9-1", "protein_name": "SKP1-like protein 4", "gene_name": "ASK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49484-1", "protein_name": "SKP1-like protein 11", "gene_name": "ASK11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LSX8", "url": "https://www.uniprot.org/uniprotkb/Q9LSX8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12970487", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"protein_name": "SKP1-like protein 10", "gene_name": "ASK10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSX9-1", "protein_name": "SKP1-like protein 9", "gene_name": "ASK9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81055-1", "protein_name": "SKP1-like protein 16", "gene_name": "ASK16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81058-1", "protein_name": "SKP1-like protein 19", "gene_name": "ASK19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1X5-1", "protein_name": "SKP1-like protein 13", "gene_name": "ASK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL65-1", "protein_name": "SKP1-like protein 17", "gene_name": "ASK17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SY65-1", "protein_name": "SKP1-like protein 18", "gene_name": "ASK18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81057-1", "protein_name": "SKP1-like protein 14", "gene_name": "ASK14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49484-1", "protein_name": "SKP1-like protein 11", "gene_name": "ASK11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SU30-1", "protein_name": "F-box protein CPR1", "gene_name": "CPR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LSX8", "url": "https://www.uniprot.org/uniprotkb/Q9LSX8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19682297", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"PER43", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZE7-1", "protein_name": "Peroxidase 51", "gene_name": "PER51", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23044-1", "protein_name": "Peroxidase 3", "gene_name": "PER3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22862-1", "protein_name": "Probable peroxidase 26", "gene_name": "PER26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22959-1", "protein_name": "Peroxidase 19", "gene_name": "PER19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23237-1", "protein_name": "Peroxidase 49", "gene_name": "PER49", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23474-1", "protein_name": "Peroxidase 40", "gene_name": "PER40", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23609-1", "protein_name": "Peroxidase 41", "gene_name": "PER41", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48677-1", "protein_name": "Peroxidase 6", "gene_name": "PER6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49293-1", "protein_name": "Peroxidase 13", "gene_name": "PER13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80912-1", "protein_name": "Peroxidase 23", "gene_name": "PER23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81755-1", "protein_name": "Putative Peroxidase 48", "gene_name": "PER48", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81772-1", "protein_name": "Peroxidase 46", "gene_name": "PER46", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93V93-1", "protein_name": "Peroxidase 44", "gene_name": "PER44", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96509-1", "protein_name": "Peroxidase 55", "gene_name": "MUA22.13; PER55", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96510-1", "protein_name": "Peroxidase 35", "gene_name": "PER35", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96512-1", "protein_name": "Peroxidase 9", "gene_name": "PER9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96518-1", "protein_name": "Peroxidase 16", "gene_name": "PER16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96519-1", "protein_name": "Peroxidase 11", "gene_name": "PER11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96522-1", "protein_name": "Peroxidase 45", "gene_name": "PER45", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FG34-1", "protein_name": "Peroxidase 54", "gene_name": "PER54", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSP0-1", "protein_name": "Peroxidase 29", "gene_name": "PER29", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJR1-1", "protein_name": "Peroxidase 65", "gene_name": "PER65", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL16-1", "protein_name": "Peroxidase 63", "gene_name": "PER63", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLV5-1", "protein_name": "Probable peroxidase 61", "gene_name": "PER61", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMI7-1", "protein_name": "Peroxidase 70", "gene_name": "PER70", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMR0-1", "protein_name": "Peroxidase 60", "gene_name": "PER60", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FX85-1", "protein_name": "Peroxidase 10", "gene_name": "PER10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDA4-1", "protein_name": "Peroxidase 38", "gene_name": "PER38", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDN9-1", "protein_name": "Peroxidase 37", "gene_name": "PER37", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LE15-1", "protein_name": "Peroxidase 4", "gene_name": "PER4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LHA7-1", "protein_name": "Peroxidase 31", "gene_name": "PER31", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNL0-1", "protein_name": "Peroxidase 8", "gene_name": "PER8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9Q9-1", "protein_name": "Peroxidase 5", "gene_name": "PER5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SI16-1", "protein_name": "Peroxidase 15", "gene_name": "PER15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SI17-1", "protein_name": "Peroxidase 14", "gene_name": "PER14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SS67-1", "protein_name": "Peroxidase 28", "gene_name": "PER28", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SUT2-1", "protein_name": "Peroxidase 39", "gene_name": "PER39", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SY33-1", "protein_name": "Peroxidase 7", "gene_name": "PER7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80822-1", "protein_name": "Peroxidase 25", "gene_name": "PER25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DI10-1", "protein_name": "Peroxidase 1", "gene_name": "PER1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24101-1", "protein_name": "Peroxidase 33", "gene_name": "PER33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24102-1", "protein_name": "Peroxidase 22", "gene_name": "PER22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42578-1", "protein_name": "Peroxidase 53", "gene_name": "PER53", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKA4-1", "protein_name": "Peroxidase 62", "gene_name": "MIJ24.50; PER62", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96511-1", "protein_name": "Peroxidase 69", "gene_name": "PER69", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96520-1", "protein_name": "Peroxidase 12", "gene_name": "PER12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJZ9-1", "protein_name": "Peroxidase 72", "gene_name": "PER72", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLC0-1", "protein_name": "Peroxidase 52", "gene_name": "PER52", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LHB9-1", "protein_name": "Peroxidase 32", "gene_name": "PER32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY7-1", "protein_name": "Peroxidase 30", "gene_name": "PER30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39034-1", "protein_name": "Peroxidase 59", "gene_name": "PER59", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43729-1", "protein_name": "Peroxidase 57", "gene_name": "PER57", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42580-1", "protein_name": "Peroxidase 21", "gene_name": "PER21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43731-1", "protein_name": "Peroxidase 50", "gene_name": "PER50", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43387-1", "protein_name": "Peroxidase 71", "gene_name": "PER71", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43735-1", "protein_name": "Peroxidase 27", "gene_name": "PER27", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43872-1", "protein_name": "Peroxidase 64", "gene_name": "PER64", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q67Z07-1", "protein_name": "Peroxidase 2", "gene_name": "PER2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLH7-1", "protein_name": "Peroxidase 20", "gene_name": "PER20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB81-1", "protein_name": "Peroxidase 42", "gene_name": "PER42", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SD46-1", "protein_name": "Peroxidase 36", "gene_name": "PER36", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJZ2-1", "protein_name": "Peroxidase 17", "gene_name": "PER17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMU8-1", "protein_name": "Peroxidase 34", "gene_name": "PER34", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LT91", "url": "https://www.uniprot.org/uniprotkb/Q9LT91" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12034502", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 73 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "S-methylmethionine plays a major role in phloem sulfur transport and is synthesized by a novel type of methyltransferase.", "journal": "The Plant cell", "date": "1999-08", "authors": "Bourgis F, Roje S, Nuccio M L, Fisher D B, Tarczynski M C, Li C, Herschbach C, Rennenberg H, Pimenta M J, Shen T L, Gage D A, Hanson A D", "reference": { "type": "PubMed", "id": "10449582", "url": "https://pubmed.ncbi.nlm.nih.gov/10449582" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LTB2-1", "protein_name": "Methionine S-methyltransferase", "gene_name": "MMT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LTB2", "url": "https://www.uniprot.org/uniprotkb/Q9LTB2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10449582", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The S-methylmethionine cycle in angiosperms: ubiquity, antiquity and activity.", "journal": "Plant J.", "date": "2001", "authors": "Ranocha P, McNeil S D, Ziemak M J, Li C, Tarczynski M C, Hanson A D", "reference": { "type": "PubMed", "id": "11309147", "url": "https://pubmed.ncbi.nlm.nih.gov/11309147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LTB2-1", "protein_name": "Methionine S-methyltransferase", "gene_name": "MMT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1W4-1", "protein_name": "Homocysteine S-methyltransferase 2", "gene_name": "HMT-2; HMT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LAX0-1", "protein_name": "Homocysteine S-methyltransferase 3", "gene_name": "HMT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SDL7-1", "protein_name": "Homocysteine S-methyltransferase 1", "gene_name": "HMT-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LTB2", "url": "https://www.uniprot.org/uniprotkb/Q9LTB2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11309147", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An essential role of s-adenosyl-L-methionine:L-methionine s-methyltransferase in selenium volatilization by plants. Methylation of selenomethionine to selenium-methyl-L-selenium- methionine, the precursor of volatile selenium.", "journal": "Plant physiology", "date": "2002-10", "authors": "Tagmount Abderrahmane, Berken Antje, Terry Norman", "reference": { "type": "PubMed", "id": "12376649", "url": "https://pubmed.ncbi.nlm.nih.gov/12376649" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LTB2-1", "protein_name": "Methionine S-methyltransferase", "gene_name": "MMT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LTB2", "url": "https://www.uniprot.org/uniprotkb/Q9LTB2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12376649", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Tarczynski Mitchell C, Wagner Conrad, Hanson Andrew D", "reference": { "type": "PubMed", "id": "12692340", "url": "https://pubmed.ncbi.nlm.nih.gov/12692340" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LTB2-1", "protein_name": "Methionine S-methyltransferase", "gene_name": "MMT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LTB2", "url": "https://www.uniprot.org/uniprotkb/Q9LTB2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12692340", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The receptor-like cytoplasmic kinase PCRK1 contributes to pattern-triggered immunity against Pseudomonas syringae in Arabidopsis thaliana.", "journal": "New Phytol.", "date": "2015", "authors": "Sreekanta Suma, Bethke Gerit, Hatsugai Noriyuki, Tsuda Kenichi, Thao Amanda, Wang Lin, Katagiri Fumiaki, Glazebrook Jane", "reference": { "type": "PubMed", "id": "25711411", "url": "https://pubmed.ncbi.nlm.nih.gov/25711411" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins.", "journal": "Plant J.", "date": "2004", "authors": "Zimmermann Ilona M, Heim Marc A, Weisshaar Bernd, Uhrig Joachim F", "reference": { "type": "PubMed", "id": "15361138", "url": "https://pubmed.ncbi.nlm.nih.gov/15361138" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LTF7-1", "protein_name": "Transcription factor MYB82", "gene_name": "MYB82", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38850-1", "protein_name": "Transcription repressor MYB5", "gene_name": "MYB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAD0-1", "protein_name": "Transcription factor EGL1", "gene_name": "BHLH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W2F1-1", "protein_name": "Transcription factor MYC1", 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"gene_name": "BETA-OHASE 2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6TBX7-1", "protein_name": "Carotene epsilon-monooxygenase, chloroplastic", "gene_name": "CYP97C1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZZ8-1", "protein_name": "Beta-carotene 3-hydroxylase 1, chloroplastic", "gene_name": "BETA-OHASE 1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LTG0", "url": "https://www.uniprot.org/uniprotkb/Q9LTG0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12782726", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, 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"uniprot_canonical_ac": "Q9LTH4-1", "protein_name": "Transcription factor BOA", "gene_name": "BOA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SNB4-1", "protein_name": "Transcription factor LUX", "gene_name": "LUX; PCL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LTH4", "url": "https://www.uniprot.org/uniprotkb/Q9LTH4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16164597", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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{ "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"Expression of glycine-rich protein genes, AtGRP5 and AtGRP23, induced by the cutin monomer 16-hydroxypalmitic acid in Arabidopsis thaliana.", "journal": "Plant Physiol. Biochem.", "date": "2008", "authors": "Park Jong Ho, Suh Mi Chung, Kim Tae Hyun, Kim Moon Chul, Cho Sung Ho", "reference": { "type": "PubMed", "id": "18657431", "url": "https://pubmed.ncbi.nlm.nih.gov/18657431" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LTP5-1", "protein_name": "Glycine-rich protein 5", "gene_name": "GRP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48848-1", "protein_name": "Glycine-rich protein 23", "gene_name": "GRP23", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LTP5", "url": "https://www.uniprot.org/uniprotkb/Q9LTP5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18657431", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"id": "Q9LTW0", "url": "https://www.uniprot.org/uniprotkb/Q9LTW0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 381, "end_pos": 381, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "P98205", "url": "https://www.uniprot.org/uniprotkb/P98205" }, { "database": "PubMed", "id": "20053675", "url": "https://pubmed.ncbi.nlm.nih.gov/20053675" } ], "uniprot_canonical_ac": "P98205-1" } ], "record_id": "pubmed.20053675", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana.", "journal": "J. Exp. Bot.", "date": "2019", "authors": "Gully Kay, Pelletier Sandra, Guillou Marie-Charlotte, Ferrand Marina, Aligon Sophie, Pokotylo Igor, Perrin Adrien, Vergne Emilie, Fagard Mathilde, Ruelland Eric, Grappin Philippe, Bucher Etienne, Renou Jean-Pierre, Aubourg S\u00e9bastien", "reference": { "type": "PubMed", "id": "30715439", "url": "https://pubmed.ncbi.nlm.nih.gov/30715439" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LU08-1", "protein_name": "Serine rich endogenous peptide 10", "gene_name": "PROSCOOP10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3E8H4-1", "protein_name": "Serine rich endogenous peptide 1", "gene_name": "PROSCOOP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56WV9-1", "protein_name": "Serine rich endogenous peptide 5", "gene_name": "PROSCOOP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WML3-1", "protein_name": "Serine rich endogenous peptide 6", "gene_name": "PROSCOOP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A178U9T0-1", "protein_name": "Serine rich endogenous peptide 16", "gene_name": "PROSCOOP16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8AVP6-1", "protein_name": "Serine rich endogenous peptide 22", "gene_name": "PROSCOOP22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8B1G7-1", "protein_name": "Serine rich endogenous peptide 21", "gene_name": "PROSCOOP21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MQS5-1", "protein_name": "Serine rich endogenous peptide 9", "gene_name": "PROSCOOP9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BD36-1", "protein_name": "Serine rich endogenous peptide 19", "gene_name": "PROSCOOP19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BH24-1", "protein_name": "Serine rich endogenous peptide 18", "gene_name": "PROSCOOP18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MRU6-1", "protein_name": "Serine rich endogenous peptide 11", "gene_name": "PROSCOOP11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IBG4-1", "protein_name": "Serine rich endogenous peptide 17", "gene_name": "PROSCOOP17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KCH3-1", "protein_name": "Serine rich endogenous peptide 15", "gene_name": "PROSCOOP15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BDL3-1", "protein_name": "Serine rich endogenous peptide 2", "gene_name": "PROSCOOP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MS31-1", "protein_name": "Serine rich endogenous peptide 7", "gene_name": "PROSCOOP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DO60-1", "protein_name": "Serine rich endogenous peptide 3", "gene_name": "PROSCOOP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1G3E7-1", "protein_name": "Serine rich endogenous peptide 23", "gene_name": "PROSCOOP23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LE06-1", "protein_name": "Serine rich endogenous peptide 13", "gene_name": "PROSCOOP13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWN6-1", "protein_name": "Serine rich endogenous peptide 8", "gene_name": "PROSCOOP8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8F3-1", "protein_name": "Serine rich endogenous peptide 20", "gene_name": "PROSCOOP20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q570K8-1", "protein_name": "Serine rich endogenous peptide 4", "gene_name": "PROSCOOP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0JQ18-1", "protein_name": "Serine rich endogenous peptide 14", "gene_name": "PROSCOOP14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B3H7I1-1", "protein_name": "Serine rich endogenous peptide 12", "gene_name": "PROSCOOP12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV87-1", "protein_name": "Precursor of elicitor peptide 1", "gene_name": "PROPEP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LU08", "url": "https://www.uniprot.org/uniprotkb/Q9LU08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 56, "end_pos": 56, "sequence_org": "S", "sequence_mut": "A", "comment": "Impaired seedling growth inhibition and altered induction of reactive oxygen species (ROS) burst. Loss of MIK2 binding and subsequent association with BAK1/SERK3, and impaired MIK2-dependent seedling and root growth inhibition and altered induction of reactive oxygen species (ROS) burst; when associated with A-58.", "evidence": [ { "database": "UniProtKB", "id": "B3H7I1", "url": "https://www.uniprot.org/uniprotkb/B3H7I1" }, { "database": "PubMed", "id": "30715439", "url": "https://pubmed.ncbi.nlm.nih.gov/30715439" }, { "database": "PubMed", "id": "34535661", "url": "https://pubmed.ncbi.nlm.nih.gov/34535661" } ], "uniprot_canonical_ac": "B3H7I1-1" }, { "start_pos": 58, "end_pos": 58, "sequence_org": "S", "sequence_mut": "A", "comment": "Impaired seedling growth inhibition. Loss of MIK2 binding and subsequent association with BAK1/SERK3, and impaired MIK2-dependent seedling and root growth inhibition and altered induction of reactive oxygen species (ROS) burst; when associated with A-56.", "evidence": [ { "database": "UniProtKB", "id": "B3H7I1", "url": "https://www.uniprot.org/uniprotkb/B3H7I1" }, { "database": "PubMed", "id": "30715439", "url": "https://pubmed.ncbi.nlm.nih.gov/30715439" }, { "database": "PubMed", "id": "34535661", "url": "https://pubmed.ncbi.nlm.nih.gov/34535661" } ], "uniprot_canonical_ac": "B3H7I1-1" } ], "record_id": "pubmed.30715439", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"protein_name": "Serine rich endogenous peptide 10", "gene_name": "PROSCOOP10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3E8H4-1", "protein_name": "Serine rich endogenous peptide 1", "gene_name": "PROSCOOP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56WV9-1", "protein_name": "Serine rich endogenous peptide 5", "gene_name": "PROSCOOP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WML3-1", "protein_name": "Serine rich endogenous peptide 6", "gene_name": "PROSCOOP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A178U9T0-1", "protein_name": "Serine rich endogenous peptide 16", "gene_name": "PROSCOOP16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8AVP6-1", "protein_name": "Serine rich endogenous peptide 22", "gene_name": "PROSCOOP22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8B1G7-1", "protein_name": "Serine rich endogenous peptide 21", "gene_name": "PROSCOOP21", 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"F4KCH3-1", "protein_name": "Serine rich endogenous peptide 15", "gene_name": "PROSCOOP15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48814-1", "protein_name": "Serine/threonine-protein kinase BIK1", "gene_name": "BIK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZG8-1", "protein_name": "MDIS1-interacting receptor like kinase 2", "gene_name": "MIK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKG5-1", "protein_name": "Somatic embryogenesis receptor kinase 4", "gene_name": "SERK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BDL3-1", "protein_name": "Serine rich endogenous peptide 2", "gene_name": "PROSCOOP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MS31-1", "protein_name": "Serine rich endogenous peptide 7", "gene_name": "PROSCOOP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DO60-1", "protein_name": "Serine rich endogenous peptide 3", "gene_name": "PROSCOOP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1G3E7-1", "protein_name": "Serine rich endogenous peptide 23", "gene_name": "PROSCOOP23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LE06-1", "protein_name": "Serine rich endogenous peptide 13", "gene_name": "PROSCOOP13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H186-1", "protein_name": "Probable serine/threonine-protein kinase PBL1", "gene_name": "PBL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWN6-1", "protein_name": "Serine rich endogenous peptide 8", "gene_name": "PROSCOOP8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8F3-1", "protein_name": "Serine rich endogenous peptide 20", "gene_name": "PROSCOOP20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q570K8-1", "protein_name": "Serine rich endogenous peptide 4", "gene_name": "PROSCOOP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8AQ95-1", "protein_name": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and biogenesis of the chloroplast NAD(P)H dehydrogenase complex.", "journal": "Biochim. Biophys. Acta", "date": "2011", "authors": "Peng Lianwei, Yamamoto Hiroshi, Shikanai Toshiharu", "reference": { "type": "PubMed", "id": "21029720", "url": "https://pubmed.ncbi.nlm.nih.gov/21029720" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LU21-1", "protein_name": "Photosynthetic NDH subunit of subcomplex B 3, chloroplastic", "gene_name": "PNSB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80634-1", "protein_name": "Photosynthetic NDH subunit of lumenal location 1, chloroplastic", "gene_name": "PNSL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AQ8-1", "protein_name": "Photosynthetic NDH subunit of subcomplex B 2, chloroplastic", "gene_name": "PNSB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXS1-1", "protein_name": "Photosynthetic NDH subunit of subcomplex B 4, chloroplastic", "gene_name": "PNSB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9N6-1", "protein_name": 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"uniprot_canonical_ac": "Q9LVM2-1", "protein_name": "NAD(P)H-quinone oxidoreductase subunit N, chloroplastic", "gene_name": "ndhN", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCY3-1", "protein_name": "Photosynthetic NDH subunit of lumenal location 4, chloroplastic", "gene_name": "PNSL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S829-1", "protein_name": "NAD(P)H-quinone oxidoreductase subunit O, chloroplastic", "gene_name": "ndhO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGH4-1", "protein_name": "Photosynthetic NDH subunit of lumenal location 3, chloroplastic", "gene_name": "PNSL3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LU21", "url": "https://www.uniprot.org/uniprotkb/Q9LU21" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the chloroplast NADH dehydrogenase-like complex: nomenclature for nuclear-encoded subunits.", "journal": "Plant Cell Physiol.", "date": "2011", "authors": "Ifuku Kentaro, Endo Tsuyoshi, Shikanai Toshiharu, Aro Eva-Mari", 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[] } ] }, { "title": "The interconversion of UDP-L-arabinopyranose and UDP-L-arabinofuranose is indispensable for plant development in Arabidopsis.", "journal": "Plant Cell", "date": "2011", "authors": "Rautengarten Carsten, Ebert Berit, Herter Thomas, Petzold Christopher J, Ishii Tadashi, Mukhopadhyay Aindrila, Usadel Bj\u00f6rn, Scheller Henrik Vibe", "reference": { "type": "PubMed", "id": "21478444", "url": "https://pubmed.ncbi.nlm.nih.gov/21478444" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LUE6-1", "protein_name": "Probable UDP-arabinopyranose mutase 4", "gene_name": "RGP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22666-1", "protein_name": "UDP-arabinopyranose mutase 3", "gene_name": "RGP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRT9-1", "protein_name": "UDP-arabinopyranose mutase 1", "gene_name": "RGP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFD2-1", "protein_name": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?", "journal": "Cell Stress Chaperones", "date": "2001", "authors": "Nover L, Bharti K, D\u00f6ring P, Mishra S K, Ganguli A, Scharf K D", "reference": { "type": "PubMed", "id": "11599559", "url": "https://pubmed.ncbi.nlm.nih.gov/11599559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LUH8-1", "protein_name": "Heat stress transcription factor A-6b", "gene_name": "HSFA6b", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22230-1", "protein_name": "Heat stress transcription factor B-3", "gene_name": "HSFB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV52-1", "protein_name": "Heat stress transcription factor C-1", "gene_name": "HSFC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BZ5-1", "protein_name": "Heat stress transcription factor A-5", "gene_name": "HSFA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96320-1", "protein_name": "Heat stress transcription factor B-1", "gene_name": "HSFB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C635-1", "protein_name": "Heat stress transcription factor B-4", "gene_name": "HSFB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQM7-1", "protein_name": "Heat stress transcription factor A-1d", "gene_name": "HSFA1D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1V5-1", "protein_name": "Heat stress transcription factor A-7b", "gene_name": "HSFA7B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7U5-1", "protein_name": "Heat stress transcription factor A-8", "gene_name": "HSFA8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCW4-1", "protein_name": "Heat stress transcription factor B-2a", "gene_name": "HSFB2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCW5-1", "protein_name": "Heat stress transcription factor A-1e", "gene_name": "HSFA1E", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0D3-1", "protein_name": "Heat stress transcription factor B-2b", "gene_name": "HSFB2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1PDN3-1", "protein_name": "Heat stress transcription factor A-6a", "gene_name": "HSFA6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYY1-1", "protein_name": "Heat stress transcription factor A-3", "gene_name": "HSFA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80982-1", "protein_name": "Heat stress transcription factor A-2", "gene_name": "HSFA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49403-1", "protein_name": "Heat stress transcription factor A-4a", "gene_name": "HSFA4A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81821-1", "protein_name": "Heat stress transcription factor A-1b", "gene_name": "HSFA1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P41151-1", "protein_name": "Heat stress transcription factor A-1a", "gene_name": "HSFA1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK72-1", "protein_name": "Heat stress transcription factor A-4c", "gene_name": "HSFA4C; RHA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVW2-1", "protein_name": "Heat stress transcription factor A-9", "gene_name": "HSFA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SV12-1", "protein_name": "Heat stress transcription factor A-7a", "gene_name": "HSFA7A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LUH8", "url": "https://www.uniprot.org/uniprotkb/Q9LUH8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11599559", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.", "journal": "J. Genet. Genomics", "date": "2008", "authors": "Guo Jingkang, Wu Jian, Ji Qian, Wang Chao, Luo Lei, Yuan Yi, Wang Yonghua, Wang Jian", "reference": { "type": "PubMed", "id": "18407058", "url": "https://pubmed.ncbi.nlm.nih.gov/18407058" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LUH8-1", "protein_name": "Heat stress transcription factor A-6b", "gene_name": "HSFA6b", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22230-1", "protein_name": "Heat stress transcription factor B-3", "gene_name": "HSFB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV52-1", "protein_name": "Heat stress transcription factor C-1", "gene_name": "HSFC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BZ5-1", "protein_name": "Heat stress transcription factor A-5", "gene_name": "HSFA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96320-1", "protein_name": "Heat stress transcription factor B-1", "gene_name": "HSFB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C635-1", "protein_name": "Heat stress transcription factor B-4", "gene_name": "HSFB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQM7-1", "protein_name": "Heat stress transcription factor A-1d", "gene_name": "HSFA1D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1V5-1", "protein_name": "Heat stress transcription factor A-7b", "gene_name": "HSFA7B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7U5-1", "protein_name": "Heat stress transcription factor A-8", "gene_name": "HSFA8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCW4-1", "protein_name": "Heat stress transcription factor B-2a", "gene_name": "HSFB2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCW5-1", "protein_name": "Heat stress transcription factor A-1e", "gene_name": "HSFA1E", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0D3-1", "protein_name": "Heat stress transcription factor B-2b", "gene_name": "HSFB2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1PDN3-1", "protein_name": "Heat stress transcription factor A-6a", "gene_name": "HSFA6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYY1-1", "protein_name": "Heat stress transcription factor A-3", "gene_name": "HSFA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80982-1", "protein_name": "Heat stress transcription factor A-2", "gene_name": "HSFA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49403-1", "protein_name": "Heat stress transcription factor A-4a", "gene_name": "HSFA4A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81821-1", "protein_name": "Heat stress transcription factor A-1b", "gene_name": "HSFA1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P41151-1", "protein_name": "Heat stress transcription factor A-1a", "gene_name": "HSFA1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK72-1", "protein_name": "Heat stress transcription factor A-4c", "gene_name": "HSFA4C; RHA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVW2-1", "protein_name": "Heat stress transcription factor A-9", "gene_name": "HSFA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SV12-1", "protein_name": "Heat stress transcription factor A-7a", "gene_name": "HSFA7A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LUH8", "url": "https://www.uniprot.org/uniprotkb/Q9LUH8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18407058", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]