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Characterization of assembly and biophysical properties.", "journal": "J. Biol. Chem.", "date": "1999", "authors": "Fasshauer D, Antonin W, Margittai M, Pabst S, Jahn R", "reference": { "type": "PubMed", "id": "10336434", "url": "https://pubmed.ncbi.nlm.nih.gov/10336434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUF4-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "Vamp8", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P60881-1", "protein_name": "Synaptosomal-associated protein 25", "gene_name": "Snap25", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P32851-1", "protein_name": "Syntaxin-1A", "gene_name": "Stx1a", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.10336434", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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Cell Sci.", "date": "2002", "authors": "Low Seng Hui, Marmorstein Lihua Y, Miura Masumi, Li Xin, Kudo Noriko, Marmorstein Alan D, Weimbs Thomas", "reference": { "type": "PubMed", "id": "12414999", "url": "https://pubmed.ncbi.nlm.nih.gov/12414999" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUF4-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "Vamp8", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.12414999", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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"uniprot_canonical_ac": "Q7Z6P3-1", "protein_name": "Ras-related protein Rab-44", "gene_name": "RAB44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8CB87-1", "protein_name": "Ras-related protein Rab-44", "gene_name": "Rab44", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70404-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "Vamp8", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "mutagenesis": [ { "start_pos": 847, "end_pos": 847, "sequence_org": "T", "sequence_mut": "N", "comment": "Constitutively inactive (GDP-bound) mutant. Increased b-hexosaminidase secretion upon FcERI-mediated activation, similar to WT. No change in b-hexosaminidase secretion upon FcERI-mediated activation, compared to WT. No change in beta-hexosaminidase secretion upon ionomycin/PMA simulation, compared to WT.", "evidence": [ { "database": "UniProtKB", "id": "Q7Z6P3", "url": "https://www.uniprot.org/uniprotkb/Q7Z6P3" }, { "database": "PubMed", "id": "33641252", "url": "https://pubmed.ncbi.nlm.nih.gov/33641252" } ], "uniprot_canonical_ac": "Q7Z6P3-1" }, { "start_pos": 892, "end_pos": 892, "sequence_org": "Q", "sequence_mut": "L", "comment": "Constitutively active (GTP-bound) mutant. No change in beta-hexosaminidase secretion upon FcERI-mediated activation, compared to WT. Decreased beta-hexosaminidase secretion upon ionomycin/PMA simulation, compared to WT.", "evidence": [ { "database": "UniProtKB", "id": "Q7Z6P3", "url": "https://www.uniprot.org/uniprotkb/Q7Z6P3" }, { "database": "PubMed", "id": "33641252", "url": "https://pubmed.ncbi.nlm.nih.gov/33641252" } ], "uniprot_canonical_ac": "Q7Z6P3-1" }, { "start_pos": 750, "end_pos": 750, "sequence_org": "A", "sequence_mut": "N", "comment": "Constitutively inactive (GDP-bound) mutant. Decreased beta-hexosaminidase secretion upon FcERI-mediated activation, compared to WT. No change in beta-hexosaminidase secretion upon ionomycin/PMA simulation, compared to WT.", "evidence": [ { "database": "UniProtKB", "id": "Q8CB87", "url": "https://www.uniprot.org/uniprotkb/Q8CB87" }, { "database": "PubMed", "id": "33641252", "url": "https://pubmed.ncbi.nlm.nih.gov/33641252" } ], "uniprot_canonical_ac": "Q8CB87-1" }, { "start_pos": 795, "end_pos": 795, "sequence_org": "N", "sequence_mut": "L", "comment": "Constitutively active (GTP-bound) mutant. No change in beta-hexosaminidase secretion upon FcERI-mediated activation, compared to WT. Decreased beta-hexosaminidase secretion upon ionomycin/PMA simulation, compared to WT.", "evidence": [ { "database": "UniProtKB", "id": "Q8CB87", "url": "https://www.uniprot.org/uniprotkb/Q8CB87" }, { "database": "PubMed", "id": "33641252", "url": "https://pubmed.ncbi.nlm.nih.gov/33641252" } ], "uniprot_canonical_ac": "Q8CB87-1" } ], "record_id": "pubmed.33641252", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endobrevin, a novel synaptobrevin/VAMP-like protein preferentially associated with the early endosome.", "journal": "Mol. Biol. Cell", "date": "1998", "authors": "Wong SH, Zhang T, Xu Y, Subramaniam VN, Griffiths G, Hong W", "reference": { "type": "PubMed", "id": "9614193", "url": "https://pubmed.ncbi.nlm.nih.gov/9614193" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WUF4-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "Vamp8", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54921-1", "protein_name": "Alpha-soluble NSF attachment protein", "gene_name": "Napa", "tax_name": "Rat" }, { "uniprot_canonical_ac": "O70404-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "Vamp8", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", 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chemistry", "date": "2001-05-25", "authors": "Jheon A H, Ganss B, Cheifetz S, Sodek J", "reference": { "type": "PubMed", "id": "11278774", "url": "https://pubmed.ncbi.nlm.nih.gov/11278774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9EPU7-1", "protein_name": "Zinc finger protein 354C", "gene_name": "Zfp354c; Znf354c", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EPU7", "url": "https://www.uniprot.org/uniprotkb/Q9EPU7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.11278774", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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[] } ] }, { "title": "Mass spectrometrical characterisation of mouse and rat synapsin isoforms 2a and 2b.", "journal": "Amino acids", "date": "2010", "authors": "Kang SU, Zhang M, Burgos M, Lubec G", "reference": { "type": "PubMed", "id": "19609639", "url": "https://pubmed.ncbi.nlm.nih.gov/19609639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q63537-1", "protein_name": "Synapsin-2", "gene_name": "Syn2", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.19609639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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"Angiotensinogen gene-inducible enhancer-binding protein 1, a member of a new family of large nuclear proteins that recognize nuclear factor kappa B-binding sites through a zinc finger motif.", "journal": "Mol. Cell. Biol.", "date": "1991", "authors": "Ron D, Brasier A R, Habener J F", "reference": { "type": "PubMed", "id": "2017183", "url": "https://pubmed.ncbi.nlm.nih.gov/2017183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00900-1", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2017183", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, 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Biophys. Res. Commun.", "date": "1993", "authors": "Cheng C Y, Morris I, Bardin C W", "reference": { "type": "PubMed", "id": "8447824", "url": "https://pubmed.ncbi.nlm.nih.gov/8447824" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P15242-1", "protein_name": "Testin-2", "gene_name": "Testin", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15242", "url": "https://www.uniprot.org/uniprotkb/P15242" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.8447824", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of a rat testis form of the inhibitor protein of cAMP-dependent protein kinase.", "journal": "Proc. 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U.S.A.", "date": "1991", "authors": "Van Patten SM, Ng DC, Th'ng JP, Angelos KL, Smith AJ, Walsh DA", "reference": { "type": "PubMed", "id": "2052616", "url": "https://pubmed.ncbi.nlm.nih.gov/2052616" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P27775-1", "protein_name": "cAMP-dependent protein kinase inhibitor beta", "gene_name": "Pkib", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9C010-1", "protein_name": "cAMP-dependent protein kinase inhibitor beta", "gene_name": "PKIB", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P27775", "url": "https://www.uniprot.org/uniprotkb/P27775" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2052616", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localization of the sulfate/anion exchanger in the rat liver.", "journal": "Am. 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