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Autism", "date": "2018", "authors": "Liu Chun-Xue, Li Chun-Yang, Hu Chun-Chun, Wang Yi, Lin Jia, Jiang Yong-Hui, Li Qiang, Xu Xiu", "reference": { "type": "PubMed", "id": "29619162", "url": "https://pubmed.ncbi.nlm.nih.gov/29619162" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9P6G4-1", "protein_name": "SH3 and multiple ankyrin repeat domains protein 2b isoform X1", "gene_name": "shank2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9P6G4", "url": "https://www.uniprot.org/uniprotkb/A0A8M9P6G4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29619162", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss-of-function of sox3 causes follicle development retardation and reduces fecundity in zebrafish.", "journal": "Protein Cell", "date": "2019", "authors": "Hong Qiang, Li Cong, Ying Ruhong, Lin Heming, Li Jingqiu, Zhao Yu, Cheng Hanhua, Zhou Rongjia", "reference": { "type": "PubMed", "id": "30588557", "url": "https://pubmed.ncbi.nlm.nih.gov/30588557" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9P6G4-1", 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A new evolutionary model for the vertebrate actin family including two novel groups.", "journal": "Mol. 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Evol.", "date": "2019", "authors": "Witjes Laura, Van Troys Marleen, Vandekerckhove Jo\u00ebl, Vandepoele Klaas, Ampe Christophe", "reference": { "type": "PubMed", "id": "31560986", "url": "https://pubmed.ncbi.nlm.nih.gov/31560986" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9P6G4-1", "protein_name": "SH3 and multiple ankyrin repeat domains protein 2b isoform X1", "gene_name": "shank2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B826-1", "protein_name": "Polypeptide N-acetylgalactosaminyltransferase", "gene_name": "galnt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7P7-1", "protein_name": "Cell death regulator Aven isoform X1", "gene_name": "aven", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N7G6-1", "protein_name": "F-box/LRR-repeat protein 18", "gene_name": "fbxl18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3X0-1", "protein_name": "Cytochrome c oxidase subunit 5B, 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomewide expression profiling in the zebrafish embryo identifies target genes regulated by Hedgehog signaling during vertebrate development.", "journal": "Genetics", "date": "2006", "authors": "Xu Jun, Srinivas Bhylahalli P, Tay Shang Yew, Mak Alicia, Yu Xianwen, Lee Serene G P, Yang Henry, Govindarajan Kunde R, Leong Bernard, Bourque Guillaume, Mathavan Sinnakarupan, Roy Sudipto", "reference": { "type": "PubMed", "id": "16888327", "url": "https://pubmed.ncbi.nlm.nih.gov/16888327" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9P8T3-1", "protein_name": "NK2 transcription factor related, locus 9", "gene_name": "nkx2.9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLR6-1", "protein_name": "Glutamate receptor", "gene_name": "si:ch211-251b21.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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Genet.", "date": "2008", "authors": "Yu Xianwen, Ng Chee Peng, Habacher Hermann, Roy Sudipto", "reference": { "type": "PubMed", "id": "19011630", "url": "https://pubmed.ncbi.nlm.nih.gov/19011630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9P8T3-1", "protein_name": "NK2 transcription factor related, locus 9", "gene_name": "nkx2.9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R8Z9-1", "protein_name": "Forkhead box protein J1-B", "gene_name": "foxj1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IRF0-1", "protein_name": "Tektin", "gene_name": "tekt1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QDF8-1", "protein_name": "Forkhead box protein J1-A", "gene_name": "foxj1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9P8T3", "url": "https://www.uniprot.org/uniprotkb/A0A8M9P8T3" } ], "common_name": "Zebrafish", 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Dyn.", "date": "2015", "authors": "Arnold Corey R, Lamont Ryan E, Walker John T, Spice Peter J, Chan Chi-Kin, Ho Chi-Yip, Childs Sarah J", "reference": { "type": "PubMed", "id": "25476803", "url": "https://pubmed.ncbi.nlm.nih.gov/25476803" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9P8T3-1", "protein_name": "NK2 transcription factor related, locus 9", "gene_name": "nkx2.9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9P8T3", "url": "https://www.uniprot.org/uniprotkb/A0A8M9P8T3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25476803", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish Rfx4 controls dorsal and ventral midline formation in the neural tube.", "journal": "Dev. 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The gsdf gene locus harbors evolutionary conserved and clustered genes preferentially expressed in fish previtellogenic oocytes.", "journal": "Gene", "date": "2011", "authors": "Gautier Aude, Le Gac Florence, Lareyre Jean-Jacques", "reference": { "type": "PubMed", "id": "21047546", "url": "https://pubmed.ncbi.nlm.nih.gov/21047546" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PCH0-1", "protein_name": "54 kDa nucleoporin", "gene_name": "nup54", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T9N8-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13 isoform X1", "gene_name": "ptpn13", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YV43-1", "protein_name": "Stress-activated protein kinase JNK", "gene_name": "mapk10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1RP53-1", "protein_name": "Gonadal somatic cell derived factor isoform X1", "gene_name": "gsdf", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PCH0", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PCH0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21047546", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleoporin 62-like protein activates canonical Wnt signaling through facilitating the nuclear import of beta-catenin in zebrafish.", "journal": "Mol. Cell. Biol.", "date": "2015", "authors": "Yang Xiaojie, Gu Qilin, Lin Li, Li Shaoyang, Zhong Shan, Li Qing, Cui Zongbin", "reference": { "type": "PubMed", "id": "25605329", "url": "https://pubmed.ncbi.nlm.nih.gov/25605329" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PCH0-1", "protein_name": "54 kDa nucleoporin", "gene_name": "nup54", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B5A8-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "nup62l", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PCH0", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PCH0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25605329", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple thyrotropin beta-subunit and thyrotropin receptor-related genes arose during vertebrate evolution.", "journal": "PLoS ONE", "date": "2014", "authors": "Maugars Gersende, Dufour Sylvie, Cohen-Tannoudji Jo\u00eblle, Qu\u00e9rat Bruno", "reference": { "type": "PubMed", "id": "25386660", "url": "https://pubmed.ncbi.nlm.nih.gov/25386660" }, "referenced_glycans": [], 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"tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PED3", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PED3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25386660", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "FOXN3 Regulates Hepatic Glucose Utilization.", "journal": "Cell Rep.", "date": "2016", "authors": "Karanth S, Zinkhan EK, Hill JT, Yost HJ, Schlegel A", "reference": { "type": "PubMed", "id": "27292639", "url": "https://pubmed.ncbi.nlm.nih.gov/27292639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PED3-1", "protein_name": "Forkhead box protein N3", "gene_name": "foxn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4H6-1", "protein_name": "Phosphoglycerate mutase", "gene_name": "pgam1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ID68-1", "protein_name": "ATP-dependent 6-phosphofructokinase", "gene_name": "pfklb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PED3", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PED3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27292639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic annotation and expression analysis of the zebrafish Rho small GTPase family during development and bacterial infection.", "journal": "Genomics", "date": "2005", "authors": "Salas-Vidal Enrique, Meijer Annemarie H, Cheng Xi, Spaink Herman P", "reference": { "type": "PubMed", "id": "15894457", "url": "https://pubmed.ncbi.nlm.nih.gov/15894457" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PF26-1", "protein_name": "Cell division cycle 42 like 2 isoform X1", "gene_name": "cdc42l2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DHE8-1", "protein_name": "Rho-related GTP-binding protein RhoA-D", "gene_name": "rhoad", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7T2E8-1", "protein_name": "Rho-related GTP-binding protein RhoA-C", "gene_name": "rhoac", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZD5-1", "protein_name": "Rho-related GTP-binding protein RhoJ", "gene_name": "rhoj", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DHM9-1", "protein_name": "Rho-related GTP-binding protein RhoA-B", "gene_name": "rhoab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1D2-1", "protein_name": "Rho-related GTP-binding protein RhoH", "gene_name": "rhoh", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RD19-1", "protein_name": "Rho-related BTB domain-containing protein 1", "gene_name": "rhobtb4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QM54-1", "protein_name": "Ras homolog family member Ub", "gene_name": "rhoub", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NUX8-1", "protein_name": "Rho-related GTP-binding protein RhoA-A", "gene_name": "rhoaa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PF26", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PF26" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15894457", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pax3 loss of function delays tumour progression in kRAS-induced zebrafish rhabdomyosarcoma models.", "journal": "Sci. Rep.", "date": "2022", "authors": "Kahsay A, Rodriguez-Marquez E, L\u00f3pez-P\u00e9rez A, H\u00f6rnblad A, von Hofsten J", "reference": { "type": "PubMed", "id": "36229514", "url": "https://pubmed.ncbi.nlm.nih.gov/36229514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PF26-1", "protein_name": "Cell division cycle 42 like 2 isoform X1", "gene_name": "cdc42l2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IN14-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "raf1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YV43-1", "protein_name": "Stress-activated protein kinase JNK", "gene_name": "mapk10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TB58-1", "protein_name": "Ribosomal protein S6 kinase", "gene_name": "rps6ka1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q9S0-1", "protein_name": "Paired box protein Pax-3b", "gene_name": "pax3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P112-1", "protein_name": "Ral guanine nucleotide dissociation stimulator-like 1", "gene_name": "rgl1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PF26", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PF26" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36229514", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Different physiological roles of insulin receptors in mediating nutrient metabolism in zebrafish.", "journal": "Am. J. Physiol. Endocrinol. 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Genet.", "date": "2021", "authors": "Li N, Zhou P, Yang M, Fang X, Kramer N, Mughal TA, Abbasi AA, Yang Y, Kaindl AM, Hu H", "reference": { "type": "PubMed", "id": "33834495", "url": "https://pubmed.ncbi.nlm.nih.gov/33834495" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PTQ9-1", "protein_name": "CRK SH3-binding GNRP", "gene_name": "rapgef1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PTQ9", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PTQ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33834495", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Biol. 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Biol. Chem.", "date": "2014", "authors": "Tu CF, Tsao KC, Lee SJ, Yang RB", "reference": { "type": "PubMed", "id": "24849601", "url": "https://pubmed.ncbi.nlm.nih.gov/24849601" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PKI0-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 2", "gene_name": "scube3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PKI0", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PKI0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24849601", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Biol.", "date": "2007", "authors": "Braasch Ingo, Schartl Manfred, Volff Jean-Nicolas", "reference": { "type": "PubMed", "id": "17498288", "url": "https://pubmed.ncbi.nlm.nih.gov/17498288" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PNN9-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "wdhd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9Q0T4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "ptprdb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FGQ8-1", "protein_name": "GTP cyclohydrolase 1", "gene_name": "gch1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QWX4-1", "protein_name": "Sepiapterin reductase", "gene_name": "spra", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PNN9", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PNN9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17498288", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A lmod1a mutation causes megacystis microcolon intestinal hypoperistalsis in a CRISPR/Cas9-modified zebrafish model.", "journal": "Pediatr. Surg. Int.", "date": "2024", "authors": "Kondo T., Tajiri T., Nagata K., Matsuura T., Shirai T., Miyata J., Kalim A.S., Kawakubo N., Kirino K., Toriigahara Y., Xiu-Ying Z.", "reference": { "type": "PubMed", "id": "39143337", "url": "https://pubmed.ncbi.nlm.nih.gov/39143337" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PRG4-1", "protein_name": "Leiomodin-3", "gene_name": "lmod1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PRG4", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PRG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39143337", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary.", "journal": "Gene", "date": "2002", "authors": "Zeng Sheng, Gong Zhiyuan", "reference": { "type": "PubMed", "id": "12234666", "url": "https://pubmed.ncbi.nlm.nih.gov/12234666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PT00-1", "protein_name": "F-box only protein 25", "gene_name": "fbxo25", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QQN9-1", "protein_name": "Septin", "gene_name": "septin2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6YBR5-1", "protein_name": "Nerve growth factor", "gene_name": "ngfb; 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Biochem. Physiol. B, Biochem. Mol. Biol.", "date": "2010", "authors": "Cleveland Beth M, Evenhuis Jason P", "reference": { "type": "PubMed", "id": "20601059", "url": "https://pubmed.ncbi.nlm.nih.gov/20601059" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PT00-1", "protein_name": "F-box only protein 25", "gene_name": "fbxo25", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PT00", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PT00" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20601059", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential response of multiple zebrafish hepatic F-box protein genes to 17alpha-ethinylestradiol treatment.", "journal": "J. Environ. Sci.", "date": "2011", "authors": "Zheng Hongping, Li Shifeng, Wu Zhili, Zhang Yunbin, Hu Shengnan, Yan Yuanchang, Li Yiping", "reference": { "type": "PubMed", "id": "21793410", "url": "https://pubmed.ncbi.nlm.nih.gov/21793410" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PT00-1", "protein_name": "F-box only protein 25", "gene_name": "fbxo25", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N7G6-1", "protein_name": "F-box/LRR-repeat protein 18", "gene_name": "fbxl18", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PT00", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PT00" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21793410", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Profile Provides Novel Insights of Fasting-Refeeding Response in Zebrafish Skeletal Muscle.", "journal": "Nutrients", "date": "2022", "authors": "Sugasawa Takehito, Komine Ritsuko, Manevich Lev, Tamai Shinsuke, Takekoshi Kazuhiro, Kanki Yasuharu", "reference": { "type": "PubMed", "id": "35684038", "url": "https://pubmed.ncbi.nlm.nih.gov/35684038" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PT00-1", "protein_name": "F-box only protein 25", "gene_name": "fbxo25", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAI0-1", "protein_name": "Krueppel-like factor 11b", "gene_name": "klf11b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PT00", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PT00" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35684038", "abstract": "", 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transcripts mediating the behavioral effects of amphetamine.", "journal": "Genome Biol.", "date": "2009", "authors": "Webb Katharine J, Norton William Hj, Tr\u00fcmbach Dietrich, Meijer Annemarie H, Ninkovic Jovica, Topp Stefanie, Heck Daniel, Marr Carsten, Wurst Wolfgang, Theis Fabian J, Spaink Herman P, Bally-Cuif Laure", "reference": { "type": "PubMed", "id": "19646228", "url": "https://pubmed.ncbi.nlm.nih.gov/19646228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PW15-1", "protein_name": "Tuberin", "gene_name": "tsc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WVR3-1", "protein_name": "Translin-associated factor X-interacting protein 1", "gene_name": "tsnaxip1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PF31-1", "protein_name": "DAB2 interacting protein b isoform X1", "gene_name": "dab2ipb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B449-1", "protein_name": "Protein enabled homolog", 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Dyn.", "date": "2010", "authors": "Marshall Kathryn E, Tomasini Amber J, Makky Khadijah, N Kumar Suresh, Mayer Alan N", "reference": { "type": "PubMed", "id": "20925120", "url": "https://pubmed.ncbi.nlm.nih.gov/20925120" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PW15-1", "protein_name": "Tuberin", "gene_name": "tsc2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PW15", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PW15" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20925120", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish model of tuberous sclerosis complex reveals cell-autonomous and non-cell-autonomous functions of mutant tuberin.", "journal": "Dis. 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Commun.", "date": "2024", "authors": "Wilson Miranda L, Romano Shannon N, Khatri Nitya, Aharon Devora, Liu Yulong, Kaufman Odelya H, Draper Bruce W, Marlow Florence L", "reference": { "type": "PubMed", "id": "38898112", "url": "https://pubmed.ncbi.nlm.nih.gov/38898112" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PW15-1", "protein_name": "Tuberin", "gene_name": "tsc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q802U2-1", "protein_name": "GATOR2 complex protein MIOS", "gene_name": "mios", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q8W3-1", "protein_name": "ATPase family gene 2 protein homolog B", "gene_name": "afg2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NB07-1", "protein_name": "Serine/threonine-protein kinase TOR", "gene_name": "mtor", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q898-1", "protein_name": "Protein LSM14 homolog B", "gene_name": "lsm14b", "tax_name": "Zebrafish" } ], 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Adv.", "date": "2018", "authors": "Van Gennip J L M, Boswell C W, Ciruna B", "reference": { "type": "PubMed", "id": "30547092", "url": "https://pubmed.ncbi.nlm.nih.gov/30547092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PWA7-1", "protein_name": "Complement component C7", "gene_name": "c7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BA52-1", "protein_name": "Pentraxin family member", "gene_name": "crp2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IMB2-1", "protein_name": "Complement component c3a, duplicate 6 precursor", "gene_name": "c3a.6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PWA7", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PWA7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30547092", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metabolism disruption analysis of zebrafish larvae in response to BPA and BPA analogs based on RNA-Seq technique.", "journal": "Ecotoxicol. Environ. Saf.", "date": "2019", "authors": "Qiu Wenhui, Liu Shuai, Yang Feng, Dong Peiyao, Yang Ming, Wong Minghung, Zheng Chunmiao", "reference": { "type": "PubMed", "id": "30826544", "url": "https://pubmed.ncbi.nlm.nih.gov/30826544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PWA7-1", "protein_name": "Complement component C7", "gene_name": "c7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0Y4-1", "protein_name": "Regulator of G-protein signaling 2", "gene_name": "rgs2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QDJ7-1", "protein_name": "Protein kinase C delta type", "gene_name": "prkcdb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P097-1", "protein_name": "Monocarboxylate transporter 9", "gene_name": "slc16a9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PH50-1", "protein_name": "Tetraspanin", "gene_name": "tspan34b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PWA7", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PWA7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30826544", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reversion of tumor hepatocytes to normal hepatocytes during liver tumor regression in an oncogene-expressing transgenic zebrafish model.", "journal": "Dis. Model. Mech.", "date": "2019", "authors": "Li Yan, Agrawal Ira, Gong Zhiyuan", "reference": { "type": "PubMed", "id": "31515263", "url": "https://pubmed.ncbi.nlm.nih.gov/31515263" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PWA7-1", "protein_name": "Complement component C7", "gene_name": "c7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QK93-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 1", "gene_name": "psmd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PFE1-1", "protein_name": "Retinol-binding protein 5", "gene_name": "rbp5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q713-1", "protein_name": "Sorbitol dehydrogenase", "gene_name": "sord", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PWA7", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PWA7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31515263", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and functional analysis of the perforin-1 like gene in disease resistance in half smooth tongue sole (Cynoglossus semilaevis).", "journal": "Dev. Comp. Immunol.", "date": "2021", "authors": "Fu Xiaoqin, Chen Yadong, Wang Lei, Zhou Qian, Li Ming, Song Yu, Li Yangzhen, Zhao Fazhen, Chen Songlin", "reference": { "type": "PubMed", "id": "34004267", "url": "https://pubmed.ncbi.nlm.nih.gov/34004267" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PWA7-1", "protein_name": "Complement component C7", "gene_name": "c7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A565-1", "protein_name": "Complement component C9", "gene_name": "c9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8HAJ8-1", "protein_name": "Complement component C8 beta chain", "gene_name": "c8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UYU9-1", "protein_name": "Perforin 1.5 isoform X1; Perforin 1.5 precursor", "gene_name": "prf1.5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PWA7", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PWA7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34004267", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional Differentiation of BMP7 Genes in Zebrafish: bmp7a for Dorsal-Ventral Pattern and bmp7b for Melanin Synthesis and Eye Development.", "journal": "Front. Cell Dev. 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preserve genome synteny but do not drive gene duplicate retention.", "journal": "Genome Res.", "date": "2009", "authors": "Hufton Andrew L, Mathia Susanne, Braun Helene, Georgi Udo, Lehrach Hans, Vingron Martin, Poustka Albert J, Panopoulou Georgia", "reference": { "type": "PubMed", "id": "19704032", "url": "https://pubmed.ncbi.nlm.nih.gov/19704032" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9Q0T4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "ptprdb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9Q0T4", "url": "https://www.uniprot.org/uniprotkb/A0A8M9Q0T4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19704032", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol.", "date": "2012", "authors": "Wang Fang, Wolfson Sean N, Gharib Arash, Sagasti Alvaro", "reference": { "type": "PubMed", "id": "22326027", "url": "https://pubmed.ncbi.nlm.nih.gov/22326027" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9Q0T4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "ptprdb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9Q0T4", "url": "https://www.uniprot.org/uniprotkb/A0A8M9Q0T4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22326027", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Apela Regulates Fluid Homeostasis by Binding to the APJ Receptor to Activate Gi Signaling.", "journal": "J. Biol. Chem.", "date": "2015", "authors": "Deng Cheng, Chen Haidi, Yang Na, Feng Yi, Hsueh Aaron J W", "reference": { "type": "PubMed", "id": "25995451", "url": "https://pubmed.ncbi.nlm.nih.gov/25995451" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9Q0T4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "ptprdb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BIC6-1", "protein_name": "Cytosol aminopeptidase", "gene_name": "lap3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A5K9-1", "protein_name": "Structural maintenance of chromosomes protein", "gene_name": "smc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F301-1", "protein_name": "Coagulation factor IX", "gene_name": "f9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A7UD89-1", "protein_name": "Neuropeptide Y receptor type 1", "gene_name": "npy1r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H751-1", "protein_name": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thyrotroph embryonic factor regulates light-induced transcription of repair genes in zebrafish embryonic cells.", "journal": "PLoS ONE", "date": "2010", "authors": "Gavriouchkina Daria, Fischer Sabine, Ivacevic Tomi, Stolte Jens, Benes Vladimir, Dekens Marcus P S", "reference": { "type": "PubMed", "id": "20830285", "url": "https://pubmed.ncbi.nlm.nih.gov/20830285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9Q1Q9-1", "protein_name": "WD repeat-containing protein 76", "gene_name": "wdr76", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDS1-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "ddb2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZH6-1", "protein_name": "Peptide-methionine (R)-S-oxide reductase", "gene_name": "msrb3", "tax_name": "Zebrafish" }, { 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receptor A2 (adgra2) during Xenopus laevis development.", "journal": "Gene Expr. Patterns", "date": "2018", "authors": "Seigfried Franziska A, Dietmann Petra, K\u00fchl Michael, K\u00fchl Susanne J", "reference": { "type": "PubMed", "id": "29462671", "url": "https://pubmed.ncbi.nlm.nih.gov/29462671" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2B9N0-1", "protein_name": "Vinexin", "gene_name": "sorbs3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AVD9-1", "protein_name": "PDZ and LIM domain protein 2", "gene_name": "pdlim2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UYT6-1", "protein_name": "aspartate transaminase", "gene_name": "got1l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UYT8-1", "protein_name": "Nucleoplasmin-2a", "gene_name": "npm2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UYT9-1", "protein_name": "Adrenoceptor beta 3a", "gene_name": "adrb3a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": 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J. Mol. 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Ruxandra F, Moran Benjamin M, Auclair Jared R, Zupanc G\u00fcnther K H, Agar Jeffrey N", "reference": { "type": "PubMed", "id": "25879418", "url": "https://pubmed.ncbi.nlm.nih.gov/25879418" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BCN1-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-58f10.7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B6F4-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "zmym4.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BCN1", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BCN1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25879418", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Part D Genomics Proteomics", "date": "2017", "authors": "Gao Sen, Liu Shikai, Yao Jun, Zhou Tao, Li Ning, Li Qi, Dunham Rex, Liu Zhanjiang", "reference": { "type": "PubMed", "id": "27806254", "url": "https://pubmed.ncbi.nlm.nih.gov/27806254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BEQ4-1", "protein_name": "Rho guanine nucleotide exchange factor 16 isoform X1", "gene_name": "arhgef16", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G7W5-1", "protein_name": "Espin isoform X1", "gene_name": "espn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BEP9-1", "protein_name": "palmitoyl-CoA hydrolase", "gene_name": "acot7", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BEQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BEQ4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27806254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanisms of RhoA inactivation and CDC42 and Rac1 activation during zebrafish optic nerve regeneration.", "journal": "Neurochem. 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Med.", "date": "2024", "authors": "Kohler Jennefer N, Legro Nicole R, Baldridge Dustin, Shin Jimann, Bowman Angela, Ugur Berrak, Jackstadt Madelyn M, Shriver Leah P, Patti Gary J, Zhang Bo, Feng Wenjia, McAdow Anthony R, Goddard Pag\u00e9, Ungar Rachel A, Jensen Tanner, Smith Kevin S, Fresard Laure, Alvarez Raquel, Bonner Devon, Reuter Chloe M, McCormack Colleen, Kravets Elijah, Marwaha Shruti, Holt James M, , Worthey Elizabeth A, Ashley Euan A, Montgomery Stephen B, Fisher Paul G, Postlethwait John, De Camilli Pietro, Solnica-Krezel Lila, Bernstein Jonathan A, Wheeler Matthew T", "reference": { "type": "PubMed", "id": "38767059", "url": "https://pubmed.ncbi.nlm.nih.gov/38767059" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BFI5-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "zgc:153383", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N128-1", "protein_name": "Protein FAM177A1", "gene_name": "FAM177A1", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BFI5", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BFI5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38767059", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "VPS13B is localized at the interface between Golgi cisternae and is a functional partner of FAM177A1.", "journal": "J. Cell Biol.", "date": "2024", "authors": "Ugur Berrak, Schueder Florian, Shin Jimann, Hanna Michael G, Wu Yumei, Leonzino Marianna, Su Maohan, McAdow Anthony R, Wilson Catherine, Postlethwait John, Solnica-Krezel Lilianna, Bewersdorf Joerg, De Camilli Pietro", "reference": { "type": "PubMed", "id": "39331042", "url": "https://pubmed.ncbi.nlm.nih.gov/39331042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BFI5-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "zgc:153383", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BFI5", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BFI5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39331042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum.", "journal": "J. Comp. Neurol.", "date": "2017", "authors": "Takeuchi Miki, Yamaguchi Shingo, Sakakibara Yoshimasa, Hayashi Takuto, Matsuda Koji, Hara Yuichiro, Tanegashima Chiharu, Shimizu Takashi, Kuraku Shigehiro, Hibi Masahiko", "reference": { "type": "PubMed", "id": "27615194", "url": "https://pubmed.ncbi.nlm.nih.gov/27615194" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BGJ9-1", "protein_name": "CUE domain-containing protein 1a isoform a", "gene_name": "cuedc1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T9A7-1", "protein_name": "Dachshund a isoform X1", "gene_name": "dacha", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PD37-1", "protein_name": "Pre-B-cell leukemia homeobox interacting protein 1b isoform X1", "gene_name": "pbxip1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FBE1-1", "protein_name": "Semaphorin-7A isoform 1 precursor", "gene_name": "sema7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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versatile gene trap to visualize and interrogate the function of the vertebrate proteome.", "journal": "Genes Dev.", "date": "2011", "authors": "Trinh Le A, Hochgreb Tatiana, Graham Matthew, Wu David, Ruf-Zamojski Frederique, Jayasena Chathurani S, Saxena Ankur, Hawk Rasheeda, Gonzalez-Serricchio Aidyl, Dixson Alana, Chow Elly, Gonzales Constanza, Leung Ho-Yin, Solomon Ilana, Bronner-Fraser Marianne, Megason Sean G, Fraser Scott E", "reference": { "type": "PubMed", "id": "22056673", "url": "https://pubmed.ncbi.nlm.nih.gov/22056673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BGN8-1", "protein_name": "Transmembrane protein 44 isoform X1", "gene_name": "tmem44", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0R1E9-1", "protein_name": "Microsomal glutathione S-transferase 1", "gene_name": "mgst1.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0VJZ9-1", "protein_name": "C2H2-type zinc finger protein", "gene_name": 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[] } ] }, { "title": "Expression patterns of SH3BGR family members in zebrafish development.", "journal": "Dev. Genes Evol.", "date": "2016", "authors": "Tong Fang, Zhang Mingming, Guo Xiaoling, Shi Hongshun, Li Li, Guan Wen, Wang Haihe, Yang Shulan", "reference": { "type": "PubMed", "id": "27233781", "url": "https://pubmed.ncbi.nlm.nih.gov/27233781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BH31-1", "protein_name": "SH3 domain-binding glutamic acid-rich protein isoform X1", "gene_name": "sh3bgr", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BH31", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BH31" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27233781", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Decellularized zebrafish cardiac extracellular matrix induces mammalian heart regeneration.", "journal": "Sci. Adv.", "date": "2016", "authors": "Chen William C W, Wang Zhouguang, Missinato Maria Azzurra, Park Dae Woo, Long Daniel Ward, Liu Heng-Jui, Zeng Xuemei, Yates Nathan A, Kim Kang, Wang Yadong", "reference": { "type": "PubMed", "id": "28138518", "url": "https://pubmed.ncbi.nlm.nih.gov/28138518" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BH31-1", "protein_name": "SH3 domain-binding glutamic acid-rich protein isoform X1", "gene_name": "sh3bgr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TIL7-1", "protein_name": "Troponin I4a isoform X1", "gene_name": "tnni4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IFJ7-1", "protein_name": "Creatine kinase S-type, mitochondrial", "gene_name": "ckmt2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3U5-1", "protein_name": "Histone H1/H5 family protein", "gene_name": "si:ch211-103n10.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R6I1-1", 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[] } ] }, { "title": "Identification of a free fatty acid receptor, FFA2R, expressed on leukocytes and activated by short-chain fatty acids.", "journal": "Biochemical and biophysical research communications", "date": "2003", "authors": "Nilsson NE, Kotarsky K, Owman C, Olde B", "reference": { "type": "PubMed", "id": "12684041", "url": "https://pubmed.ncbi.nlm.nih.gov/12684041" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCK6-1", "protein_name": "Free fatty acid receptor 2", "gene_name": "Ffar2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O15552-1", "protein_name": "Free fatty acid receptor 2", "gene_name": "FFAR2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VCK6", "url": "https://www.uniprot.org/uniprotkb/Q8VCK6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12684041", 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K, Roh SG, Sasaki S", "reference": { "type": "PubMed", "id": "16123168", "url": "https://pubmed.ncbi.nlm.nih.gov/16123168" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCK6-1", "protein_name": "Free fatty acid receptor 2", "gene_name": "Ffar2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UFD7-1", "protein_name": "Free fatty acid receptor 3", "gene_name": "Ffar3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VCK6", "url": "https://www.uniprot.org/uniprotkb/Q8VCK6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16123168", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of G protein-coupled receptor 43 in adipocytes leads to inhibition of lipolysis and suppression of plasma free fatty acids.", "journal": "Endocrinology", "date": "2008", "authors": "Ge H, Li X, Weiszmann J, Wang P, Baribault H, Chen JL, Tian H, Li Y", "reference": { "type": "PubMed", "id": "18499755", "url": "https://pubmed.ncbi.nlm.nih.gov/18499755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCK6-1", "protein_name": "Free fatty acid receptor 2", 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