[ { "title": "NUDT16 is a (deoxy)inosine diphosphatase, and its deficiency induces accumulation of single-strand breaks in nuclear DNA and growth arrest.", "journal": "Nucleic acids research", "date": "2010", "authors": "Iyama T, Abolhassani N, Tsuchimoto D, Nonaka M, Nakabeppu Y", "reference": { "type": "PubMed", "id": "20385596", "url": "https://pubmed.ncbi.nlm.nih.gov/20385596" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UKK9-1", "protein_name": "ADP-sugar pyrophosphatase", "gene_name": "NUDT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DE0-1", "protein_name": "U8 snoRNA-decapping enzyme", "gene_name": "NUDT16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV35-1", "protein_name": "Nucleotide triphosphate diphosphatase NUDT15", "gene_name": "NUDT15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P3D0-1", "protein_name": "U8 snoRNA-decapping enzyme", "gene_name": "Nudt16", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3LIE5-1", "protein_name": "Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase", "gene_name": "ADPRM", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UKK9", "url": "https://www.uniprot.org/uniprotkb/Q9UKK9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20385596", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cleavage of oxidized guanine nucleotide and ADP sugar by human NUDT5 protein.", "journal": "Journal of biochemistry", "date": "2011", "authors": "Ito R, Sekiguchi M, Setoyama D, Nakatsu Y, Yamagata Y, Hayakawa H", "reference": { "type": "PubMed", "id": "21389046", "url": "https://pubmed.ncbi.nlm.nih.gov/21389046" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UKK9-1", "protein_name": "ADP-sugar pyrophosphatase", "gene_name": "NUDT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DE0-1", "protein_name": "U8 snoRNA-decapping enzyme", "gene_name": "NUDT16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV35-1", "protein_name": "Nucleotide triphosphate diphosphatase NUDT15", "gene_name": "NUDT15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3LIE5-1", "protein_name": "Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase", "gene_name": "ADPRM", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UKK9", "url": "https://www.uniprot.org/uniprotkb/Q9UKK9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21389046", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Diverse substrate recognition and hydrolysis mechanisms of human NUDT5.", "journal": "Nucleic acids research", "date": "2011", "authors": "Arimori T, Tamaoki H, Nakamura T, Kamiya H, Ikemizu S, Takagi Y, Ishibashi T, Harashima H, Sekiguchi M, Yamagata Y", "reference": { "type": "PubMed", "id": "21768126", "url": "https://pubmed.ncbi.nlm.nih.gov/21768126" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UKK9-1", "protein_name": "ADP-sugar pyrophosphatase", "gene_name": "NUDT5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UKK9", "url": "https://www.uniprot.org/uniprotkb/Q9UKK9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human MTH3 (NUDT18) protein hydrolyzes oxidized forms of guanosine and deoxyguanosine diphosphates: comparison with MTH1 and MTH2.", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Takagi Y, Setoyama D, Ito R, Kamiya H, Yamagata Y, Sekiguchi M", "reference": { "type": "PubMed", "id": "22556419", "url": "https://pubmed.ncbi.nlm.nih.gov/22556419" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UKK9-1", "protein_name": "ADP-sugar pyrophosphatase", "gene_name": "NUDT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DE0-1", "protein_name": "U8 snoRNA-decapping enzyme", "gene_name": "NUDT16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV35-1", "protein_name": "Nucleotide triphosphate diphosphatase NUDT15", "gene_name": "NUDT15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3LIE5-1", "protein_name": "Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase", "gene_name": "ADPRM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVK8-1", "protein_name": "8-oxo-dGDP phosphatase NUDT18", "gene_name": "NUDT18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36639-4", "protein_name": "Oxidized purine nucleoside triphosphate 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular bases of catalysis and ADP-ribose preference of human Mn2+-dependent ADP-ribose/CDP-alcohol diphosphatase and conversion by mutagenesis to a preferential cyclic ADP-ribose phosphohydrolase.", "journal": "PloS one", "date": "2015", "authors": "Cabezas A, Ribeiro JM, Rodrigues JR, Lopez-Villamizar I, Fernandez A, Canales J, Pinto RM, Costas MJ, Cameselle JC", "reference": { "type": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UKK9-1", "protein_name": "ADP-sugar pyrophosphatase", "gene_name": "NUDT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DE0-1", "protein_name": "U8 snoRNA-decapping enzyme", "gene_name": "NUDT16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV35-1", "protein_name": "Nucleotide triphosphate diphosphatase NUDT15", "gene_name": "NUDT15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3LIE5-1", "protein_name": "Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase", "gene_name": "ADPRM", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UKK9", "url": "https://www.uniprot.org/uniprotkb/Q9UKK9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 110, "end_pos": 110, "sequence_org": "N", "sequence_mut": "A", "comment": "Catalytic efficiency is reduced 40-fold with ADP-D-ribose and 100-fold with CDP-choline as substrates.", "evidence": [ { "database": "UniProtKB", "id": "Q3LIE5", "url": "https://www.uniprot.org/uniprotkb/Q3LIE5" }, { "database": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" } ], "uniprot_canonical_ac": "Q3LIE5-1" }, { "start_pos": 111, "end_pos": 111, "sequence_org": "H", "sequence_mut": "A", "comment": "Catalytic efficiency is reduced 200-fold with ADP-D-ribose and 500-fold with CDP-choline as substrates.", "evidence": [ { "database": "UniProtKB", "id": "Q3LIE5", "url": "https://www.uniprot.org/uniprotkb/Q3LIE5" }, { "database": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" } ], "uniprot_canonical_ac": "Q3LIE5-1" }, { "start_pos": 111, "end_pos": 111, "sequence_org": "H", "sequence_mut": "N", "comment": "Catalytic efficiency is reduced 20-fold with ADP-D-ribose and 75-fold with CDP-choline as substrates.", "evidence": [ { "database": "UniProtKB", "id": "Q3LIE5", "url": "https://www.uniprot.org/uniprotkb/Q3LIE5" }, { "database": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" } ], "uniprot_canonical_ac": "Q3LIE5-1" }, { "start_pos": 196, "end_pos": 196, "sequence_org": "L", "sequence_mut": "A", "comment": "Catalytic efficiency is reduced 5-fold with ADP-D-ribose and 2-fold with 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Catalytic efficiency is reduced 100-fold with ADP-D-ribose; when associated with A-37.", "evidence": [ { "database": "UniProtKB", "id": "Q3LIE5", "url": "https://www.uniprot.org/uniprotkb/Q3LIE5" }, { "database": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" } ], "uniprot_canonical_ac": "Q3LIE5-1" }, { "start_pos": 210, "end_pos": 210, "sequence_org": "F", "sequence_mut": "A", "comment": "Catalytic efficiency is reduced 70-fold with ADP-D-ribose and 40-fold with CDP-choline as substrates.", "evidence": [ { "database": "UniProtKB", "id": "Q3LIE5", "url": "https://www.uniprot.org/uniprotkb/Q3LIE5" }, { "database": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" } ], "uniprot_canonical_ac": "Q3LIE5-1" }, { "start_pos": 253, "end_pos": 253, "sequence_org": "C", "sequence_mut": "A", "comment": "Has a very mild effect on enzymatic activity; catalytic efficiency is increased 1.7-fold with ADP-D-ribose and is unchanged with CDP-choline as substrates.", "evidence": [ { "database": "UniProtKB", "id": "Q3LIE5", "url": "https://www.uniprot.org/uniprotkb/Q3LIE5" }, { "database": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" } ], "uniprot_canonical_ac": "Q3LIE5-1" }, { "start_pos": 27, "end_pos": 27, "sequence_org": "Q", "sequence_mut": "H", "comment": "Catalytic efficiency is reduced 11-fold with ADP-D-ribose or CDP-choline as substrate.", "evidence": [ { "database": "UniProtKB", "id": "Q3LIE5", "url": "https://www.uniprot.org/uniprotkb/Q3LIE5" }, { "database": "PubMed", "id": "25692488", "url": "https://pubmed.ncbi.nlm.nih.gov/25692488" } ], "uniprot_canonical_ac": "Q3LIE5-1" }, { "start_pos": 37, "end_pos": 37, "sequence_org": "F", "sequence_mut": "A", "comment": "Catalytic efficiency is reduced 50-fold with ADP-D-ribose and 4-fold with CDP-choline as substrates. 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"authors": "Wright RH, Lioutas A, Le Dily F, Soronellas D, Pohl A, Bonet J, Nacht AS, Samino S, Font-Mateu J, Vicent GP, Wierer M, Trabado MA, Schelhorn C, Carolis C, Macias MJ, Yanes O, Oliva B, Beato M", "reference": { "type": "PubMed", "id": "27257257", "url": "https://pubmed.ncbi.nlm.nih.gov/27257257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UKK9-1", "protein_name": "ADP-sugar pyrophosphatase", "gene_name": "NUDT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W56-1", "protein_name": "Poly(ADP-ribose) glycohydrolase", "gene_name": "PARG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAN9-1", "protein_name": "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1", "gene_name": "NMNAT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Silencing of Nudix type 5 represses proliferation and invasion and enhances chemosensitivity of gastric carcinoma cells by affecting the AKT/GSK-3beta/beta-catenin pathway.", "journal": "Toxicology and applied pharmacology", "date": "2022", "authors": "Tan D, Zhang Y", "reference": { "type": "PubMed", "id": "35247377", "url": "https://pubmed.ncbi.nlm.nih.gov/35247377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UKK9-1", "protein_name": "ADP-sugar pyrophosphatase", "gene_name": "NUDT5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UKK9", "url": "https://www.uniprot.org/uniprotkb/Q9UKK9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35247377", 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No effect on interaction with POLR3C.", "evidence": [ { "database": "UniProtKB", "id": "Q9H1D9", "url": "https://www.uniprot.org/uniprotkb/Q9H1D9" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9H1D9-1" }, { "start_pos": 173, "end_pos": 175, "sequence_org": "ESE", "sequence_mut": "KSK", "comment": "Strongly impaired dsDNA-binding. No effect on interaction with POLR3C.", "evidence": [ { "database": "UniProtKB", "id": "Q9H1D9", "url": "https://www.uniprot.org/uniprotkb/Q9H1D9" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9H1D9-1" }, { "start_pos": 312, "end_pos": 312, "sequence_org": "L", "sequence_mut": "K", "comment": "Loss of interaction with POLR3G and POLR3GL. No effect on interaction with POLR3F.", "evidence": [ { "database": "UniProtKB", "id": "Q9BUI4", "url": "https://www.uniprot.org/uniprotkb/Q9BUI4" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9BUI4-1" }, { "start_pos": 357, "end_pos": 357, "sequence_org": "R", "sequence_mut": "E", "comment": "Strongly decreased ssDNA-binding. No effect on interaction with POLR3F, POLR3G, nor with POLR3GL.", "evidence": [ { "database": "UniProtKB", "id": "Q9BUI4", "url": "https://www.uniprot.org/uniprotkb/Q9BUI4" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9BUI4-1" }, { "start_pos": 364, "end_pos": 367, "sequence_org": "RIFR", "sequence_mut": "EIFE", "comment": "Strongly decreased ssDNA-binding. No effect on interaction with POLR3F, POLR3G, nor with POLR3GL.", "evidence": [ { "database": "UniProtKB", "id": "Q9BUI4", "url": "https://www.uniprot.org/uniprotkb/Q9BUI4" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9BUI4-1" }, { "start_pos": 389, "end_pos": 389, "sequence_org": "K", "sequence_mut": "E", "comment": "Strongly decreased ssDNA-binding. No effect on interaction with POLR3F, POLR3G, nor with POLR3GL.", "evidence": [ { "database": "UniProtKB", "id": "Q9BUI4", "url": "https://www.uniprot.org/uniprotkb/Q9BUI4" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9BUI4-1" }, { "start_pos": 445, "end_pos": 449, "sequence_org": "NLIER", "sequence_mut": "ALIEE", "comment": "Strongly decreased ssDNA-binding. No effect on interaction with POLR3F, POLR3G, nor with POLR3GL.", "evidence": [ { "database": "UniProtKB", "id": "Q9BUI4", "url": "https://www.uniprot.org/uniprotkb/Q9BUI4" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9BUI4-1" }, { "start_pos": 466, "end_pos": 470, "sequence_org": "RVEAI", "sequence_mut": "EVEAF", "comment": "Mild decrease in ssDNA-binding. No effect on interaction with POLR3F, POLR3G, nor with POLR3GL.", "evidence": [ { "database": "UniProtKB", "id": "Q9BUI4", "url": "https://www.uniprot.org/uniprotkb/Q9BUI4" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9BUI4-1" }, { "start_pos": 51, "end_pos": 52, "sequence_org": "KK", "sequence_mut": "EE", "comment": "Strongly decreased ssDNA-binding. No effect on interaction with POLR3F, POLR3G, nor with POLR3GL.", "evidence": [ { "database": "UniProtKB", "id": "Q9BUI4", "url": "https://www.uniprot.org/uniprotkb/Q9BUI4" }, { "database": "PubMed", "id": "21358628", "url": "https://pubmed.ncbi.nlm.nih.gov/21358628" } ], "uniprot_canonical_ac": "Q9BUI4-1" } ], "record_id": "pubmed.21358628", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel role for an RNA polymerase III subunit POLR3G in regulating pluripotency in human embryonic stem cells.", "journal": "Stem Cells", "date": "2011", "authors": "Wong RC, Pollan S, Fong H, Ibrahim A, Smith EL, Ho M, Laslett AL, Donovan PJ", "reference": { "type": "PubMed", "id": "21898682", "url": "https://pubmed.ncbi.nlm.nih.gov/21898682" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15318-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7", "gene_name": "POLR3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXY9-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7", "gene_name": "Polr3g", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15318", "url": "https://www.uniprot.org/uniprotkb/O15318" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21898682", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene duplication and neofunctionalization: POLR3G and POLR3GL.", "journal": "Genome Res.", "date": "2014", "authors": "Renaud Marianne, Praz Viviane, Vieu Erwann, Florens Laurence, Washburn Michael P, l'H\u00f4te Philippe, Hernandez Nouria", "reference": { "type": "PubMed", "id": "24107381", "url": "https://pubmed.ncbi.nlm.nih.gov/24107381" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15318-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7", "gene_name": "POLR3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT43-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7-like", "gene_name": "POLR3GL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXY9-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7", "gene_name": "Polr3g", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R0C0-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7-like", "gene_name": "Polr3gl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BUI4-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "POLR3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15318", "url": "https://www.uniprot.org/uniprotkb/O15318" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24107381", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Struct. Biol.", "date": "2015", "authors": "Boissier Fanny, Dumay-Odelot H\u00e9l\u00e8ne, Teichmann Martin, Fribourg S\u00e9bastien", "reference": { "type": "PubMed", "id": "26394183", "url": "https://pubmed.ncbi.nlm.nih.gov/26394183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15318-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7", "gene_name": "POLR3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT43-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7-like", "gene_name": "POLR3GL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUI4-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "POLR3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15318", "url": "https://www.uniprot.org/uniprotkb/O15318" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], 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Collin Joseph, Zhu Lili, Montaner David, Armstrong Lyle, Neganova Irina, Lako Majlinda", "reference": { "type": "PubMed", "id": "27339422", "url": "https://pubmed.ncbi.nlm.nih.gov/27339422" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15318-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7", "gene_name": "POLR3G", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15318", "url": "https://www.uniprot.org/uniprotkb/O15318" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27339422", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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{ "uniprot_canonical_ac": "O14802-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC1", "gene_name": "POLR3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVU0-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC5", "gene_name": "POLR3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT43-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC7-like", "gene_name": "POLR3GL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUI4-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "POLR3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15318", "url": "https://www.uniprot.org/uniprotkb/O15318" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35637192", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic structure and promoter activity of the human tissue factor pathway inhibitor-2 gene.", "journal": "Biochim. 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[] } ] }, { "title": "Crystal structure of Kunitz domain 1 (KD1) of tissue factor pathway inhibitor-2 in complex with trypsin. Implications for KD1 specificity of inhibition.", "journal": "J. Biol. Chem.", "date": "2005", "authors": "Schmidt Amy E, Chand Hitendra S, Cascio Dulio, Kisiel Walter, Bajaj S Paul", "reference": { "type": "PubMed", "id": "15932872", "url": "https://pubmed.ncbi.nlm.nih.gov/15932872" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48307-1", "protein_name": "Tissue factor pathway inhibitor 2", "gene_name": "TFPI2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48307", "url": "https://www.uniprot.org/uniprotkb/P48307" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15932872", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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Commun.", "date": "1988", "authors": "Butzow R, Huhtala ML, Bohn H, Virtanen I, Seppala M", "reference": { "type": "PubMed", "id": "3276312", "url": "https://pubmed.ncbi.nlm.nih.gov/3276312" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48307-1", "protein_name": "Tissue factor pathway inhibitor 2", "gene_name": "TFPI2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48307", "url": "https://www.uniprot.org/uniprotkb/P48307" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3276312", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Biochem.", "date": "1994", "authors": "Miyagi Y, Koshikawa N, Yasumitsu H, Miyagi E, Hirahara F, Aoki I, Misugi K, Umeda M, Miyazaki K", "reference": { "type": "PubMed", "id": "7896752", "url": "https://pubmed.ncbi.nlm.nih.gov/7896752" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48307-1", "protein_name": "Tissue factor pathway inhibitor 2", "gene_name": "TFPI2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48307", "url": "https://www.uniprot.org/uniprotkb/P48307" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7896752", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning, expression, and partial characterization of a second human tissue-factor-pathway inhibitor.", "journal": "Proc. 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"protein_name": "DNA helicase MCM8", "gene_name": "MCM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UBD5", "url": "https://www.uniprot.org/uniprotkb/Q9UBD5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15707891", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopy.", "journal": "Structure (London, England : 1993)", "date": "2012", "authors": "Sun J, Kawakami H, Zech J, Speck C, Stillman B, Li H", "reference": { "type": "PubMed", "id": "22405012", "url": "https://pubmed.ncbi.nlm.nih.gov/22405012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UBD5-1", "protein_name": "Origin recognition complex subunit 3", "gene_name": "ORC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13415-1", "protein_name": "Origin recognition complex subunit 1", "gene_name": "ORC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13416-1", "protein_name": "Origin recognition complex subunit 2", "gene_name": "ORC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43913-1", "protein_name": "Origin recognition complex subunit 5", "gene_name": "ORC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43929-1", "protein_name": "Origin recognition complex subunit 4", "gene_name": "ORC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99741-1", "protein_name": "DNA replication factor CDC6", "gene_name": "CDC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5N6-1", "protein_name": "Origin recognition complex subunit 6", "gene_name": "ORC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA3-1", "protein_name": "DNA helicase MCM8", "gene_name": "MCM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UBD5", "url": "https://www.uniprot.org/uniprotkb/Q9UBD5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22405012", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Leucine-rich repeat and WD repeat-containing protein 1 is recruited to pericentric heterochromatin by trimethylated lysine 9 of histone H3 and maintains heterochromatin silencing.", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Chan KM, Zhang Z", "reference": { "type": "PubMed", "id": "22427655", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of the eukaryotic origin recognition complex.", "journal": "Nature", "date": "2015", "authors": "Bleichert F, Botchan MR, Berger JM", "reference": { "type": "PubMed", "id": "25762138", "url": "https://pubmed.ncbi.nlm.nih.gov/25762138" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UBD5-1", "protein_name": "Origin recognition complex subunit 3", "gene_name": "ORC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13415-1", "protein_name": "Origin recognition complex subunit 1", "gene_name": "ORC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13416-1", "protein_name": "Origin recognition complex subunit 2", "gene_name": "ORC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43913-1", "protein_name": "Origin recognition complex subunit 5", "gene_name": "ORC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9W102-1", "protein_name": "Origin recognition complex 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.", "journal": "Nature communications", "date": "2020", "authors": "Schmidt JM, Bleichert F", "reference": { "type": "PubMed", "id": "32848132", "url": "https://pubmed.ncbi.nlm.nih.gov/32848132" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UBD5-1", "protein_name": "Origin recognition complex subunit 3", "gene_name": "ORC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13415-1", "protein_name": "Origin recognition complex subunit 1", "gene_name": "ORC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13416-1", "protein_name": "Origin recognition complex subunit 2", "gene_name": "ORC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VSM9-1", "protein_name": "Cell division control protein", "gene_name": "Cdc6", "tax_name": "Fruit fly" }, 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J.", "date": "2001", "authors": "Gasmi L, McLennan AG", "reference": { "type": "PubMed", "id": "11415433", "url": "https://pubmed.ncbi.nlm.nih.gov/11415433" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C024-1", "protein_name": "Peroxisomal coenzyme A diphosphatase NUDT7", "gene_name": "NUDT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MXV4-1", "protein_name": "Acyl-coenzyme A diphosphatase NUDT19", "gene_name": "NUDT19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99P30-1", "protein_name": "Peroxisomal coenzyme A diphosphatase NUDT7", "gene_name": "Nudt7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5T8D3-1", "protein_name": "Acyl-CoA-binding domain-containing protein 5", "gene_name": "ACBD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC06-1", "protein_name": "Acyl-CoA-binding domain-containing protein 4", "gene_name": "ACBD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYQ3-1", "protein_name": "2-Hydroxyacid oxidase 2", "gene_name": "HAO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P0C024", "url": "https://www.uniprot.org/uniprotkb/P0C024" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11415433", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteomic analysis of mouse kidney peroxisomes: identification of RP2p as a peroxisomal nudix hydrolase with acyl-CoA diphosphatase activity.", "journal": "The Biochemical journal", "date": "2006", "authors": "Ofman R, Speijer D, Leen R, Wanders RJ", "reference": { "type": "PubMed", "id": "16185196", "url": "https://pubmed.ncbi.nlm.nih.gov/16185196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C024-1", "protein_name": "Peroxisomal coenzyme A diphosphatase NUDT7", "gene_name": "NUDT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MXV4-1", "protein_name": "Acyl-coenzyme A diphosphatase NUDT19", "gene_name": "NUDT19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11930-1", "protein_name": "Acyl-coenzyme A diphosphatase NUDT19", "gene_name": "Nudt19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5T8D3-1", "protein_name": "Acyl-CoA-binding domain-containing protein 5", "gene_name": "ACBD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC06-1", "protein_name": "Acyl-CoA-binding domain-containing protein 4", "gene_name": "ACBD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYQ3-1", "protein_name": "2-Hydroxyacid oxidase 2", "gene_name": "HAO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P0C024", "url": "https://www.uniprot.org/uniprotkb/P0C024" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16185196", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"uniprot_canonical_ac": "A8MXV4-1", "protein_name": "Acyl-coenzyme A diphosphatase NUDT19", "gene_name": "NUDT19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99P30-1", "protein_name": "Peroxisomal coenzyme A diphosphatase NUDT7", "gene_name": "Nudt7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5T8D3-1", "protein_name": "Acyl-CoA-binding domain-containing protein 5", "gene_name": "ACBD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC06-1", "protein_name": "Acyl-CoA-binding domain-containing protein 4", "gene_name": "ACBD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYQ3-1", "protein_name": "2-Hydroxyacid oxidase 2", "gene_name": "HAO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P0C024", "url": "https://www.uniprot.org/uniprotkb/P0C024" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18799520", 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receptor protein complex.", "journal": "Autophagy", "date": "2014", "authors": "Nazarko TY", "reference": { "type": "PubMed", "id": "24905344", "url": "https://pubmed.ncbi.nlm.nih.gov/24905344" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C024-1", "protein_name": "Peroxisomal coenzyme A diphosphatase NUDT7", "gene_name": "NUDT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MXV4-1", "protein_name": "Acyl-coenzyme A diphosphatase NUDT19", "gene_name": "NUDT19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T8D3-1", "protein_name": "Acyl-CoA-binding domain-containing protein 5", "gene_name": "ACBD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC06-1", "protein_name": "Acyl-CoA-binding domain-containing protein 4", "gene_name": "ACBD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYQ3-1", "protein_name": "2-Hydroxyacid oxidase 2", "gene_name": "HAO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P0C024", "url": "https://www.uniprot.org/uniprotkb/P0C024" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24905344", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "FAM65A as a novel prognostic biomarker in human tumors reveal by a pan-cancer analysis.", "journal": "Discover. Oncology", "date": "2021-12-07", "authors": "Liang Wenken, Mo Chune, Wei Jianfen, Chen Wei, Gong Weiwei, Shi Jianling, Hou Xianliang, Li Chunhong, Deng Yecheng, Ou Minglin", "reference": { "type": "PubMed", "id": "35201499", "url": "https://pubmed.ncbi.nlm.nih.gov/35201499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6ZS17-1", "protein_name": "Rho family-interacting cell polarization regulator 1", "gene_name": "RIPOR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6ZS17", "url": "https://www.uniprot.org/uniprotkb/Q6ZS17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 351, "end_pos": 351, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6ZS17", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[The structure and specific features of the cDNA expression of the human gene MRPL37].", "journal": "Bioorganicheskaia khimiia", "date": "2004", "authors": "Levshenkova EV, Ukraintsev KE, Orlova VV, Alibaeva RA, Kovriga IE, Zhugdernamzhilyn O, Frolova EI", "reference": { "type": "PubMed", "id": "15562971", "url": "https://pubmed.ncbi.nlm.nih.gov/15562971" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BZE1-1", "protein_name": "Large ribosomal subunit protein 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polymorphisms in PARK2 and MRPL37 are associated with higher risk of recurrent venous thromboembolism in a sex-specific manner.", "journal": "Journal of thrombosis and thrombolysis", "date": "2018", "authors": "Sundquist K, Ahmad A, Svensson PJ, Zoller B, Sundquist J, Memon AA", "reference": { "type": "PubMed", "id": "29671165", "url": "https://pubmed.ncbi.nlm.nih.gov/29671165" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BZE1-1", "protein_name": "Large ribosomal subunit protein mL37", "gene_name": "MRPL37", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BZE1", "url": "https://www.uniprot.org/uniprotkb/Q9BZE1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29671165", 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human and mouse proteases: a comparative genomic approach.", "journal": "Nat. Rev. Genet.", "date": "2003", "authors": "Puente XS, Sanchez LM, Overall CM, Lopez-Otin C", "reference": { "type": "PubMed", "id": "12838346", "url": "https://pubmed.ncbi.nlm.nih.gov/12838346" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7RTZ1-1", "protein_name": "Ovochymase-2", "gene_name": "OVCH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTY7-1", "protein_name": "Ovochymase-1", "gene_name": "OVCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7M759-1", "protein_name": "Alpha/beta hydrolase domain-containing protein 17B", "gene_name": "Abhd17b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A1L453-1", "protein_name": "Serine protease 38", "gene_name": "PRSS38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTY9-1", "protein_name": "Serine protease 41", "gene_name": "PRSS41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTY3-1", "protein_name": "Putative serine protease 45", "gene_name": "PRSS45P", "tax_name": "Human" 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OVCH2 is required for male fertility.", "journal": "Science (New York, N.Y.)", "date": "2020", "authors": "Kiyozumi D, Noda T, Yamaguchi R, Tobita T, Matsumura T, Shimada K, Kodani M, Kohda T, Fujihara Y, Ozawa M, Yu Z, Miklossy G, Bohren KM, Horie M, Okabe M, Matzuk MM, Ikawa M", "reference": { "type": "PubMed", "id": "32499443", "url": "https://pubmed.ncbi.nlm.nih.gov/32499443" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7RTZ1-1", "protein_name": "Ovochymase-2", "gene_name": "OVCH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7M761-1", "protein_name": "Ovochymase-2", "gene_name": "Ovch2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q78DX7-1", "protein_name": "Proto-oncogene tyrosine-protein kinase ROS", "gene_name": "Ros1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61220-1", "protein_name": "Protein kinase C-binding protein NELL2", "gene_name": "Nell2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q7RTZ1", "url": "https://www.uniprot.org/uniprotkb/Q7RTZ1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32499443", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Role of pro-IGF-II processing by proprotein convertase 4 in human placental development.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005", "authors": "Qiu Q, Basak A, Mbikay M, Tsang BK, Gruslin A", "reference": { "type": "PubMed", "id": "16040806", "url": "https://pubmed.ncbi.nlm.nih.gov/16040806" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6UW60-1", "protein_name": "Proprotein convertase subtilisin/kexin type 4", "gene_name": "PCSK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01344-1", "protein_name": "Insulin-like growth factor 2", "gene_name": "IGF2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6UW60", "url": "https://www.uniprot.org/uniprotkb/Q6UW60" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 112, "end_pos": 112, "sequence_org": "K", "sequence_mut": "A", "comment": "No effect in proteolytical processing.", "evidence": [ { "database": "UniProtKB", "id": "P01344", "url": "https://www.uniprot.org/uniprotkb/P01344" }, { "database": "PubMed", "id": "16040806", "url": "https://pubmed.ncbi.nlm.nih.gov/16040806" } ], "uniprot_canonical_ac": "P01344-1" }, { "start_pos": 128, "end_pos": 128, "sequence_org": "R", "sequence_mut": "A", "comment": "Abolishes proteolytical processing.", "evidence": [ { "database": "UniProtKB", "id": "P01344", "url": "https://www.uniprot.org/uniprotkb/P01344" }, { "database": "PubMed", "id": "16040806", "url": "https://pubmed.ncbi.nlm.nih.gov/16040806" } ], "uniprot_canonical_ac": "P01344-1" }, { "start_pos": 92, "end_pos": 92, "sequence_org": "R", "sequence_mut": "A", "comment": "Decreases mature IGF2 levels.", "evidence": [ { "database": "UniProtKB", "id": "P01344", "url": "https://www.uniprot.org/uniprotkb/P01344" }, { "database": "PubMed", 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virology", "date": "2006", "authors": "Dhar D, Mapa K, Pudi R, Srinivasan P, Bodhinathan K, Das S", "reference": { "type": "PubMed", "id": "16195786", "url": "https://pubmed.ncbi.nlm.nih.gov/16195786" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02543", "url": "https://www.uniprot.org/uniprotkb/Q02543" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16195786", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"date": "2004", "authors": "Sampath P, Mazumder B, Seshadri V, Gerber CA, Chavatte L, Kinter M, Ting SM, Dignam JD, Kim S, Driscoll DM, Fox PL", "reference": { "type": "PubMed", "id": "15479637", "url": "https://pubmed.ncbi.nlm.nih.gov/15479637" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04406-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "GAPDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60506-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein Q", "gene_name": "SYNCRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P40429", "url": 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initiation factor in mRNA-specific translational control.", "journal": "Molecular cell", "date": "2007-01-12", "authors": "Kapasi Purvi, Chaudhuri Sujan, Vyas Keyur, Baus Diane, Komar Anton A, Fox Paul L, Merrick William C, Mazumder Barsanjit", "reference": { "type": "PubMed", "id": "17218275", "url": "https://pubmed.ncbi.nlm.nih.gov/17218275" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P40429", "url": "https://www.uniprot.org/uniprotkb/P40429" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17218275", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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in murine macrophages.", "journal": "Molecular and cellular biology", "date": "2012", "authors": "Arif A, Chatterjee P, Moodt RA, Fox PL", "reference": { "type": "PubMed", "id": "23071094", "url": "https://pubmed.ncbi.nlm.nih.gov/23071094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O54784-1", "protein_name": "Death-associated protein kinase 3", "gene_name": "Dapk3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P19253-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "Rpl13a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGC7-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "Eprs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P04406-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "GAPDH", "tax_name": "Human" }, { 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Loss of interaction with SLC27A1. Mutant mice have no apparent developmental defect but display reduced adiposity associated with decreased insulin levels and adipocytes size. They also display increased lipolysis and fatty acid beta-oxidation and an extended lifespan. Adipocytes display decreased insulin-stimulated long-chain fatty acid uptake.", "evidence": [ { "database": "UniProtKB", "id": "Q8CGC7", "url": "https://www.uniprot.org/uniprotkb/Q8CGC7" }, { "database": "PubMed", "id": "23071094", "url": "https://pubmed.ncbi.nlm.nih.gov/23071094" }, { "database": "PubMed", "id": "28178239", "url": "https://pubmed.ncbi.nlm.nih.gov/28178239" } ], "uniprot_canonical_ac": "Q8CGC7-1" }, { "start_pos": 999, "end_pos": 999, "sequence_org": "S", "sequence_mut": "D", "comment": "Constitutively active in translation inhibition (phosphomimetic). 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Abolishes interaction with SYNCRIP.", "evidence": [ { "database": "UniProtKB", "id": "P07814", "url": "https://www.uniprot.org/uniprotkb/P07814" }, { "database": "PubMed", "id": "23071094", "url": "https://pubmed.ncbi.nlm.nih.gov/23071094" } ], "uniprot_canonical_ac": "P07814-1" }, { "start_pos": 886, "end_pos": 886, "sequence_org": "S", "sequence_mut": "D", "comment": "Not active in translation inhibition (phosphomimetic) and abolishes GAIT complex association with eiF4G. 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No effect on GAIT complex association with eiF4G.", "evidence": [ { "database": "UniProtKB", "id": "P07814", "url": "https://www.uniprot.org/uniprotkb/P07814" }, { "database": "PubMed", "id": "23071094", "url": "https://pubmed.ncbi.nlm.nih.gov/23071094" } ], "uniprot_canonical_ac": "P07814-1" } ], "phosphorylation": [ { "start_pos": 77, "end_pos": 77, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ZIPK/DAPK3", "evidence": [ { "database": "UniProtKB", "id": "P19253", "url": "https://www.uniprot.org/uniprotkb/P19253" }, { "database": "PRO", "id": "P19253", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P19253" }, { "database": "iPTMnet", "id": "P19253", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P19253" }, { "database": "PubMed", "id": "23071094", "url": "https://pubmed.ncbi.nlm.nih.gov/23071094" } ], "site_lbl": "Ser77", "uniprot_canonical_ac": "P19253-1" }, { "start_pos": 999, "end_pos": 999, 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutually exclusive amino acid residues of L13a are responsible for its ribosomal incorporation and translational silencing leading to resolution of inflammation.", "journal": "RNA (New York, N.Y.)", "date": "2019", "authors": "Kour R, Komar AA, Mazumder B", "reference": { "type": "PubMed", "id": "31308261", "url": "https://pubmed.ncbi.nlm.nih.gov/31308261" }, "referenced_glycans": [], "referenced_proteins": [ { 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Commun.", "date": "1992", "authors": "Miura K, Titani K, Kurosawa Y, Kanai Y", "reference": { "type": "PubMed", "id": "1520323", "url": "https://pubmed.ncbi.nlm.nih.gov/1520323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02818-1", "protein_name": "Nucleobindin-1", "gene_name": "NUCB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02819-1", "protein_name": "Nucleobindin-1", "gene_name": "Nucb1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02818", "url": "https://www.uniprot.org/uniprotkb/Q02818" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1520323", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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biochemical and genetic discovery pipeline identifies PLCdelta4b as a nonreceptor activator of heterotrimeric G-proteins.", "journal": "J. 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Lipid Res.", "date": "2001", "authors": "Lehto M, Laitinen S, Chinetti G, Johansson M, Ehnholm C, Staels B, Ikonen E, Olkkonen V M", "reference": { "type": "PubMed", "id": "11483621", "url": "https://pubmed.ncbi.nlm.nih.gov/11483621" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BZF1-1", "protein_name": "Oxysterol-binding protein-related protein 8", "gene_name": "OSBPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0X9-1", "protein_name": "Oxysterol-binding protein-related protein 5", "gene_name": "OSBPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXB4-1", "protein_name": "Oxysterol-binding protein-related protein 11", "gene_name": "OSBPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXB5-1", "protein_name": "Oxysterol-binding protein-related protein 10", "gene_name": "OSBPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1P3-1", "protein_name": "Oxysterol-binding protein-related protein 2", "gene_name": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ORP8 induces apoptosis by releasing cytochrome c from mitochondria in nonsmall cell lung cancer.", "journal": "Oncology reports", "date": "2020", "authors": "Li J, Cui J, Li Z, Fu X, Li J, Li H, Wang S, Zhang M", "reference": { "type": "PubMed", "id": "32323800", "url": "https://pubmed.ncbi.nlm.nih.gov/32323800" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BZF1-1", "protein_name": "Oxysterol-binding protein-related protein 8", "gene_name": "OSBPL8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BZF1", "url": "https://www.uniprot.org/uniprotkb/Q9BZF1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32323800", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Direct association of tristetraprolin with the nucleoporin CAN/Nup214.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2004", "authors": "Carman Julie A, Nadler Steven G", "reference": { "type": "PubMed", "id": "14766228", "url": "https://pubmed.ncbi.nlm.nih.gov/14766228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26651-1", "protein_name": "mRNA decay activator protein ZFP36", "gene_name": "ZFP36", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P35658", "url": "https://www.uniprot.org/uniprotkb/P35658" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14766228", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]