[ { "title": "Amine Oxidase, Copper Containing 3 (Aoc3) Knockout Mice Are More Prone to DSS-induced Colitis and Colonic Tumorigenesis.", "journal": "In vivo (Athens, Greece)", "date": "2024", "authors": "\u00d6zcan \u00d6zge, Akyol \u00d6zge, Akyol Aytekin", "reference": { "type": "PubMed", "id": "39187313", "url": "https://pubmed.ncbi.nlm.nih.gov/39187313" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.39187313", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation, structural characterization, and chromosomal mapping of the mouse vascular adhesion protein-1 gene and promoter.", "journal": "J. Immunol.", "date": "1998", "authors": "Bono P, Salmi M, Smith D J, Lepp\u00e4nen I, Horelli-Kuitunen N, Palotie A, Jalkanen S", "reference": { "type": "PubMed", "id": "9743358", "url": "https://pubmed.ncbi.nlm.nih.gov/9743358" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9743358", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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of a cluster of ATP-binding cassette (ABC) genes.", "journal": "Mamm. Genome", "date": "2003", "authors": "Annilo T, Chen ZQ, Shulenin S, Dean M", "reference": { "type": "PubMed", "id": "12532264", "url": "https://pubmed.ncbi.nlm.nih.gov/12532264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K442-1", "protein_name": "ABC-type organic anion transporter ABCA8A", "gene_name": "Abca8a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K448-1", "protein_name": "Cholesterol transporter ABCA5", "gene_name": "Abca5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K440-1", "protein_name": "ABC-type organic anion transporter ABCA8B", "gene_name": "Abca8b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K441-1", "protein_name": "ATP-binding cassette sub-family A member 6", "gene_name": "Abca6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K449-1", "protein_name": "ATP-binding cassette sub-family A member 9", "gene_name": "Abca9", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8K442", "url": "https://www.uniprot.org/uniprotkb/Q8K442" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12532264", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Acute digoxin loading reduces ABCA8A mRNA expression in the mouse liver.", "journal": "Clin. Exp. Pharmacol. 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Pharm.", "date": "2018", "authors": "Sasaki K, Tachikawa M, Uchida Y, Hirano S, Kadowaki F, Watanabe M, Ohtsuki S, Terasaki T", "reference": { "type": "PubMed", "id": "29300488", "url": "https://pubmed.ncbi.nlm.nih.gov/29300488" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K442-1", "protein_name": "ABC-type organic anion transporter ABCA8A", "gene_name": "Abca8a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K440-1", "protein_name": "ABC-type organic anion transporter ABCA8B", "gene_name": "Abca8b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O94911-3", "protein_name": "ABC-type organic anion transporter ABCA8", "gene_name": "ABCA8", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8K442", "url": "https://www.uniprot.org/uniprotkb/Q8K442" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "APOBEC3 inhibits mouse mammary tumour virus replication in vivo.", "journal": "Nature", "date": "2007-02-22", "authors": "Okeoma Chioma M, Lovsin Nika, Peterlin B Matija, Ross Susan R", "reference": { "type": "PubMed", "id": "17259974", "url": "https://pubmed.ncbi.nlm.nih.gov/17259974" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99J72-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3", "gene_name": "Apobec3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99J72", "url": "https://www.uniprot.org/uniprotkb/Q99J72" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17259974", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Rev. Immunol.", "date": "2008", "authors": "Chiu Ya-Lin, Greene Warner C", "reference": { "type": "PubMed", "id": "18304004", "url": "https://pubmed.ncbi.nlm.nih.gov/18304004" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99J72-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3", "gene_name": "Apobec3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct Tissue-Specific Roles for the Disease-Associated Autophagy Genes ATG16L2 and ATG16L1.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2019", "authors": "Khor B, Conway KL, Omar AS, Biton M, Haber AL, Rogel N, Baxt LA, Begun J, Kuballa P, Gagnon JD, Lassen KG, Regev A, Xavier RJ", "reference": { "type": "PubMed", "id": "31451676", "url": "https://pubmed.ncbi.nlm.nih.gov/31451676" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6KAU8-1", "protein_name": "Protein 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ATG16L2 inhibits NLRP3 inflammasome activation through promoting ATG5-12-16L1 complex assembly and autophagy.", "journal": "European journal of immunology", "date": "2022", "authors": "Wang D, Yuan T, Liu J, Wen Z, Shen Y, Tang J, Wang Z, Wu X", "reference": { "type": "PubMed", "id": "35426127", "url": "https://pubmed.ncbi.nlm.nih.gov/35426127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6KAU8-1", "protein_name": "Protein Atg16l2", "gene_name": "Atg16l2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6KAU8", "url": "https://www.uniprot.org/uniprotkb/Q6KAU8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.35426127", "abstract": "", "glycosylation": [], "mutagenesis": 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U.S.A.", "date": "2011", "authors": "Choi YH, Suzuki A, Hajarnis S, Ma Z, Chapin HC, Caplan MJ, Pontoglio M, Somlo S, Igarashi P", "reference": { "type": "PubMed", "id": "21670265", "url": "https://pubmed.ncbi.nlm.nih.gov/21670265" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3UEI1-1", "protein_name": "3',5'-cyclic-AMP phosphodiesterase 4C", "gene_name": "Pde4c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q01341-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "Adcy6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84309-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "Adcy5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35245-1", "protein_name": "Polycystin-2", "gene_name": "Pkd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P28741-1", "protein_name": "Kinesin-like protein KIF3A", "gene_name": "Kif3a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3UEI1", "url": "https://www.uniprot.org/uniprotkb/Q3UEI1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21670265", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts.", "journal": "Proteins", "date": "2004", "authors": "Canaves Jaume M", "reference": { "type": "PubMed", "id": "15162483", "url": "https://pubmed.ncbi.nlm.nih.gov/15162483" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q505B7-1", "protein_name": "tRNA-splicing ligase-activating factor archease", "gene_name": "Zbtb8os", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWT0-1", "protein_name": "tRNA-splicing ligase-activating factor archease", "gene_name": "ZBTB8OS", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q505B7", "url": "https://www.uniprot.org/uniprotkb/Q505B7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15162483", 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"PubMed", "id": "1339387", "url": "https://pubmed.ncbi.nlm.nih.gov/1339387" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q01339-1", "protein_name": "Beta-2-glycoprotein 1", "gene_name": "Apoh", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q01339", "url": "https://www.uniprot.org/uniprotkb/Q01339" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1339387", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effects of apolipoprotein H downregulation on lipid metabolism, fatty liver disease, and gut microbiota dysbiosis.", "journal": "Journal of lipid research", "date": "2023-12-14", "authors": "Liu Yaming, Zhao Yiqun, Liu Qiusong, Li Binbin, Poovannalil Vineeth D, Chen Binbin, Wu Zeyi", "reference": { "type": "PubMed", "id": "38101620", "url": "https://pubmed.ncbi.nlm.nih.gov/38101620" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q01339-1", "protein_name": "Beta-2-glycoprotein 1", "gene_name": "Apoh", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P02749-1", "protein_name": "Beta-2-glycoprotein 1", "gene_name": "APOH", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q01339", "url": "https://www.uniprot.org/uniprotkb/Q01339" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38101620", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "\u03b22-glycoprotein I promotes the clearance of circulating mitochondria.", "journal": "PloS one", "date": "2024", "authors": "Dasgupta Swapan Kumar, Gollamudi Jahnavi, Rivera Stefanie, Poche Ross A, Rumbaut Rolando E, Thiagarajan Perumal", "reference": { "type": "PubMed", "id": "38271349", "url": "https://pubmed.ncbi.nlm.nih.gov/38271349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q01339-1", "protein_name": "Beta-2-glycoprotein 1", "gene_name": "Apoh", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q01339", "url": "https://www.uniprot.org/uniprotkb/Q01339" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38271349", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Serum apolipoprotein H determines ferroptosis resistance by modulating cellular lipid composition.", "journal": "Cell death & disease", "date": "2024-10-01", "authors": "He Xiang, Zhang Jiahui, Huang Masha, Wang Jie, Yang Simin, Yu Xiang, Xu Yingjie, Yang Wen", "reference": { "type": "PubMed", "id": "39353906", "url": 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Genet.", "date": "2003", "authors": "Shultz Leonard D, Lyons Bonnie L, Burzenski Lisa M, Gott Bruce, Samuels Rebecca, Schweitzer Peter A, Dreger Christine, Herrmann Harald, Kalscheuer Vera, Olins Ada L, Olins Donald E, Sperling Karl, Hoffmann Katrin", "reference": { "type": "PubMed", "id": "12490533", "url": "https://pubmed.ncbi.nlm.nih.gov/12490533" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3U9G9-1", "protein_name": "Delta(14)-sterol reductase LBR", "gene_name": "Lbr", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3U9G9", "url": "https://www.uniprot.org/uniprotkb/Q3U9G9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12490533", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Biophys. Res. Commun.", "date": "2015", "authors": "Xu M, Cai C, Sun X, Chen W, Li Q, Zhou H", "reference": { "type": "PubMed", "id": "26009488", "url": "https://pubmed.ncbi.nlm.nih.gov/26009488" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3U9G9-1", "protein_name": "Delta(14)-sterol reductase LBR", "gene_name": "Lbr", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CJG0-1", "protein_name": "Protein argonaute-2", "gene_name": "Ago2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7Z7G1-1", "protein_name": "Cytokine-dependent hematopoietic cell linker", "gene_name": "CLNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9QZE2-1", "protein_name": "Cytokine-dependent hematopoietic cell linker", "gene_name": "Clnk", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q14739-1", "protein_name": "Delta(14)-sterol reductase LBR", 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Biophys. Res. Commun.", "date": "2002", "authors": "Flick MJ, Konieczny SF", "reference": { "type": "PubMed", "id": "12127981", "url": "https://pubmed.ncbi.nlm.nih.gov/12127981" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TNG8-1", "protein_name": "D-lactate dehydrogenase, mitochondrial", "gene_name": "Ldhd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P50463-1", "protein_name": "Cysteine and glycine-rich protein 3", "gene_name": "Csrp3", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q86WU2-1", "protein_name": "D-lactate dehydrogenase, mitochondrial", "gene_name": "LDHD", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TNG8", "url": "https://www.uniprot.org/uniprotkb/Q7TNG8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12127981", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Hul W, Vikkula M, Votruba M, Zabel B, Garcia T, Baron R, Olsen BR, Warman ML", "reference": { "type": "PubMed", "id": "11719191", "url": "https://pubmed.ncbi.nlm.nih.gov/11719191" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q91VN0-1", "protein_name": "Low-density lipoprotein receptor-related protein 5", "gene_name": "Lrp5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O75197-1", "protein_name": "Low-density lipoprotein receptor-related protein 5", "gene_name": "LRP5", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q91VN0", "url": "https://www.uniprot.org/uniprotkb/Q91VN0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11719191", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Cell physiology", "date": "2024-04-01", "authors": "Nakamura Yoshinobu, Ito Masa-Aki, Hoshino Yukino, Matsuoka Isao, Okada Toshiaki, Okada Yasunobu, Nakanishi Takeo", "reference": { "type": "PubMed", "id": "38372137", "url": "https://pubmed.ncbi.nlm.nih.gov/38372137" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P08207-1", "protein_name": "Protein S100-A10", "gene_name": "S100a10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPT5-1", "protein_name": "Solute carrier organic anion transporter family member 2A1", "gene_name": "Slco2a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P08207", "url": "https://www.uniprot.org/uniprotkb/P08207" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38372137", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two new members of the murine Sim gene family are transcriptional repressors and show different expression patterns during mouse embryogenesis.", "journal": "Mol. Cell. Biol.", "date": "1996", "authors": "Ema M, Morita M, Ikawa S, Tanaka M, Matsuda Y, Gotoh O, Saijoh Y, Fujii H, Hamada H, Kikuchi Y, Fujii-Kuriyama Y", "reference": { "type": "PubMed", "id": "8927054", "url": "https://pubmed.ncbi.nlm.nih.gov/8927054" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61045-1", "protein_name": "Single-minded homolog 1", "gene_name": "Sim1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61045", "url": "https://www.uniprot.org/uniprotkb/Q61045" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8927054", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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J. Hum. Genet.", "date": "2001", "authors": "Lu K, Lee MH, Hazard S, Brooks-Wilson A, Hidaka H, Kojima H, Ose L, Stalenhoef AF, Mietinnen T, Bjorkhem I, Bruckert E, Pandya A, Brewer HB Jr, Salen G, Dean M, Srivastava A, Patel SB", "reference": { "type": "PubMed", "id": "11452359", "url": "https://pubmed.ncbi.nlm.nih.gov/11452359" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P58428-3", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9H221-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "ABCG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H222-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "ABCG5", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", 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[] } ] }, { "title": "Regulation of ATP-binding cassette sterol transporters ABCG5 and ABCG8 by the liver X receptors alpha and beta.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Repa JJ, Berge KE, Pomajzl C, Richardson JA, Hobbs H, Mangelsdorf DJ", "reference": { "type": "PubMed", "id": "11901146", "url": "https://pubmed.ncbi.nlm.nih.gov/11901146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], 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Lipid Res.", "date": "2002", "authors": "Lu K, Lee MH, Yu H, Zhou Y, Sandell SA, Salen G, Patel SB", "reference": { "type": "PubMed", "id": "11907139", "url": "https://pubmed.ncbi.nlm.nih.gov/11907139" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11907139", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Lipid Res.", "date": "2003", "authors": "Khovidhunkit Weerapan, Moser Arthur H, Shigenaga Judy K, Grunfeld Carl, Feingold Kenneth R", "reference": { "type": "PubMed", "id": "12777468", "url": "https://pubmed.ncbi.nlm.nih.gov/12777468" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P41233-1", "protein_name": "Phospholipid-transporting ATPase ABCA1", "gene_name": "Abca1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64343-1", "protein_name": "ATP-binding cassette sub-family G member 1", "gene_name": "Abcg1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": 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protein trafficking and biliary cholesterol excretion.", "journal": "The Journal of biological chemistry", "date": "2003-11-28", "authors": "Graf Gregory A, Yu Liqing, Li Wei-Ping, Gerard Robert, Tuma Pamela L, Cohen Jonathan C, Hobbs Helen H", "reference": { "type": "PubMed", "id": "14504269", "url": "https://pubmed.ncbi.nlm.nih.gov/14504269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H221-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "ABCG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H222-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "ABCG5", "tax_name": "Human" } ], "species": [ { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Selective sterol accumulation in ABCG5/ABCG8-deficient mice.", "journal": "Journal of lipid research", "date": "2004-02", "authors": "Yu Liqing, von Bergmann Klaus, Lutjohann Dieter, Hobbs Helen H, Cohen Jonathan C", "reference": { "type": "PubMed", "id": "14657202", "url": "https://pubmed.ncbi.nlm.nih.gov/14657202" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mouse model of sitosterolemia: absence of Abcg8/sterolin-2 results in failure to secrete biliary cholesterol.", "journal": "BMC Med.", "date": "2004", "authors": "Klett EL, Lu K, Kosters A, Vink E, Lee MH, Altenburg M, Shefer S, Batta AK, Yu H, Chen J, Klein R, Looije N, Oude-Elferink R, Groen AK, Maeda N, Salen G, Patel SB", "reference": { "type": "PubMed", "id": "15040800", "url": "https://pubmed.ncbi.nlm.nih.gov/15040800" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15040800", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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{ "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_n_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "mining_tool" ] } ] }, { "title": "Functional asymmetry of nucleotide-binding domains in ABCG5 and ABCG8.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Zhang DW, Graf GA, Gerard RD, Cohen JC, Hobbs HH", "reference": { "type": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 112, "end_pos": 112, "sequence_org": "R", "sequence_mut": "K", "comment": "No effect on ATP-binding and on expression of both ABCG5 and ABCG8. No effect on sterol transport.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 112, "end_pos": 112, "sequence_org": "R", "sequence_mut": "M", "comment": "No effect on ATP-binding and on expression of both ABCG5 and ABCG8. No effect on sterol transport.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 214, "end_pos": 214, "sequence_org": "V", "sequence_mut": "I", "comment": "No effect on sterol transport; when associated with S-216.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 216, "end_pos": 216, "sequence_org": "G", "sequence_mut": "S", "comment": "No effect on sterol transport; when associated with I-214.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 217, "end_pos": 217, "sequence_org": "G", "sequence_mut": "D", "comment": "Abolishes cholesterol transport activity, and nearly abolishes plant sterol transport.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" }, { "database": "PubMed", "id": "16867993", "url": "https://pubmed.ncbi.nlm.nih.gov/16867993" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 239, "end_pos": 239, "sequence_org": "E", "sequence_mut": "D", "comment": "No effect on sterol transport.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 239, "end_pos": 239, "sequence_org": "E", "sequence_mut": "Q", "comment": "Mildly decreases cholesterol transport. No effect on plant sterol transport.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 194, "end_pos": 194, "sequence_org": "I", "sequence_mut": "V", "comment": "No effect on cholesterol and sitosterol transport activity; when associated with G-196.", "evidence": [ { "database": "UniProtKB", "id": "Q99PE8", "url": "https://www.uniprot.org/uniprotkb/Q99PE8" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q99PE8-1" }, { "start_pos": 196, "end_pos": 196, "sequence_org": "S", "sequence_mut": "G", "comment": "No effect on cholesterol and sitosterol transport activity; when associated with V-194.", "evidence": [ { "database": "UniProtKB", "id": "Q99PE8", "url": "https://www.uniprot.org/uniprotkb/Q99PE8" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q99PE8-1" }, { "start_pos": 197, "end_pos": 197, "sequence_org": "G", "sequence_mut": "D", "comment": "No effect on cholesterol and sitosterol transport activity. Mildly reduced expression of ABCG5 and ABCG8.", "evidence": [ { "database": "UniProtKB", "id": "Q99PE8", "url": "https://www.uniprot.org/uniprotkb/Q99PE8" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q99PE8-1" }, { "start_pos": 219, "end_pos": 219, "sequence_org": "E", "sequence_mut": "D", "comment": "Decreases expression of both ABCG5 and ABCG8. Disrupts sterol transport activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99PE8", "url": "https://www.uniprot.org/uniprotkb/Q99PE8" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q99PE8-1" }, { "start_pos": 219, "end_pos": 219, "sequence_org": "E", "sequence_mut": "Q", "comment": "Strongly decreases expression of both ABCG5 and ABCG8. Disrupts sterol transport activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99PE8", "url": "https://www.uniprot.org/uniprotkb/Q99PE8" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q99PE8-1" }, { "start_pos": 93, "end_pos": 93, "sequence_org": "K", "sequence_mut": "M", "comment": "Disrupts sterol transport activity. Decreases expression of both ABCG5 and ABCG8.", "evidence": [ { "database": "UniProtKB", "id": "Q99PE8", "url": "https://www.uniprot.org/uniprotkb/Q99PE8" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" }, { "database": "PubMed", "id": "16867993", "url": "https://pubmed.ncbi.nlm.nih.gov/16867993" } ], "uniprot_canonical_ac": "Q99PE8-1" }, { "start_pos": 93, "end_pos": 93, "sequence_org": "K", "sequence_mut": "R", "comment": "Strongly reduces cholesterol transport activity, but has little effect on biliary secretion of campesterol and sitosterol. No effect on ATP-binding and on expression of ABCG5 and ABCG8.", "evidence": [ { "database": "UniProtKB", "id": "Q99PE8", "url": "https://www.uniprot.org/uniprotkb/Q99PE8" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" } ], "uniprot_canonical_ac": "Q99PE8-1" } ], "record_id": "pubmed.16352607", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sterol transfer by ABCG5 and ABCG8: in vitro assay and reconstitution.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Wang J, Sun F, Zhang DW, Ma Y, Xu F, Belani JD, Cohen JC, Hobbs HH, Xie XS", "reference": { "type": "PubMed", "id": "16867993", "url": "https://pubmed.ncbi.nlm.nih.gov/16867993" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DBM0-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "Abcg8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99PE8-1", "protein_name": "ATP-binding cassette sub-family G member 5", "gene_name": "Abcg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 217, "end_pos": 217, "sequence_org": "G", "sequence_mut": "D", "comment": "Abolishes cholesterol transport activity, and nearly abolishes plant sterol transport.", "evidence": [ { "database": "UniProtKB", "id": "Q9DBM0", "url": "https://www.uniprot.org/uniprotkb/Q9DBM0" }, { "database": "PubMed", "id": "16352607", "url": "https://pubmed.ncbi.nlm.nih.gov/16352607" }, { "database": "PubMed", "id": "16867993", "url": "https://pubmed.ncbi.nlm.nih.gov/16867993" } ], "uniprot_canonical_ac": "Q9DBM0-1" }, { "start_pos": 93, "end_pos": 93, "sequence_org": "K", "sequence_mut": "M", "comment": "Disrupts sterol transport activity. 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