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Biol. 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Commun.", "date": "2001", "authors": "Hofer T, Spielmann P, Stengel P, Stier B, Katschinski DM, Desbaillets I, Gassmann M, Wenger RH", "reference": { "type": "PubMed", "id": "11688972", "url": "https://pubmed.ncbi.nlm.nih.gov/11688972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CEE6-1", "protein_name": "PAS domain-containing serine/threonine-protein kinase", "gene_name": "Pask", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96RG2-1", "protein_name": "PAS domain-containing serine/threonine-protein kinase", "gene_name": "PASK", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CEE6", "url": "https://www.uniprot.org/uniprotkb/Q8CEE6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11688972", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted disruption of the mouse PAS domain serine/threonine kinase PASKIN.", "journal": "Mol. Cell. Biol.", "date": "2003", "authors": "Katschinski DM, Marti HH, Wagner KF, Shibata J, Eckhardt K, Martin F, Depping R, Paasch U, Gassmann M, Ledermann B, Desbaillets I, Wenger RH", "reference": { "type": "PubMed", "id": "12972598", "url": "https://pubmed.ncbi.nlm.nih.gov/12972598" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CEE6-1", "protein_name": "PAS domain-containing serine/threonine-protein kinase", "gene_name": "Pask", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UM45-1", "protein_name": "Protein phosphatase 1 regulatory subunit 7", "gene_name": "Ppp1r7", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CEE6", "url": "https://www.uniprot.org/uniprotkb/Q8CEE6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12972598", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "\u03b1-parvin controls chondrocyte column formation and regulates long bone development.", "journal": "Bone research", "date": "2023-08-22", "authors": "Yuan Jifan, Guo Ling, Wang Jiaxin, Zhou Zhongjun, Wu Chuanyue", "reference": { "type": "PubMed", "id": "37607905", "url": "https://pubmed.ncbi.nlm.nih.gov/37607905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9EPC1-1", "protein_name": "Alpha-parvin", "gene_name": "Parva", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9EPC1", "url": "https://www.uniprot.org/uniprotkb/Q9EPC1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37607905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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kinase gene (PANK2) is defective in Hallervorden-Spatz syndrome.", "journal": "Nat. Genet.", "date": "2001", "authors": "Zhou B, Westaway SK, Levinson B, Johnson MA, Gitschier J, Hayflick SJ", "reference": { "type": "PubMed", "id": "11479594", "url": "https://pubmed.ncbi.nlm.nih.gov/11479594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80YV4-1", "protein_name": "4'-phosphopantetheine phosphatase", "gene_name": "Pank4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96CD2-1", "protein_name": "Phosphopantothenoylcysteine decarboxylase", "gene_name": "PPCDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13057-1", "protein_name": "Bifunctional coenzyme A synthase", "gene_name": "COASY", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZ23-1", "protein_name": "Pantothenate kinase 2, mitochondrial", "gene_name": "PANK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAB8-1", "protein_name": "Phosphopantothenate--cysteine ligase", "gene_name": "PPCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVE7-1", 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Mutat.", "date": "2019", "authors": "Sun M, Chen C, Hou S, Li X, Wang H, Zhou J, Chen X, Liu P, Kijlstra A, Lin S, Ye J", "reference": { "type": "PubMed", "id": "30585370", "url": "https://pubmed.ncbi.nlm.nih.gov/30585370" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80YV4-1", "protein_name": "4'-phosphopantetheine phosphatase", "gene_name": "Pank4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVE7-1", "protein_name": "4'-phosphopantetheine phosphatase", "gene_name": "PANK4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80YV4", "url": "https://www.uniprot.org/uniprotkb/Q80YV4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30585370", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted disruption of the gene for the PAK5 kinase in mice.", "journal": "Mol. Cell. 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dchs1, fjx1, and fat-j suggests conservation of the planar cell polarity pathway identified in Drosophila.", "journal": "Developmental dynamics : an official publication of the American Association of Anatomists", "date": "2005", "authors": "Rock R, Schrauth S, Gessler M", "reference": { "type": "PubMed", "id": "16059920", "url": "https://pubmed.ncbi.nlm.nih.gov/16059920" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9PVD3-1", "protein_name": "Protocadherin-16", "gene_name": "Dchs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q2PZL6-1", "protein_name": "Protocadherin Fat 4", "gene_name": "Fat4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BNA6-1", "protein_name": "Protocadherin Fat 3", "gene_name": "Fat3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BQB4-1", "protein_name": "Four-jointed box protein 1", "gene_name": "Fjx1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { 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Cell Biol.", "date": "2009", "authors": "Ishiuchi T, Misaki K, Yonemura S, Takeichi M, Tanoue T", "reference": { "type": "PubMed", "id": "19506035", "url": "https://pubmed.ncbi.nlm.nih.gov/19506035" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9PVD3-1", "protein_name": "Protocadherin-16", "gene_name": "Dchs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q2PZL6-1", "protein_name": "Protocadherin Fat 4", "gene_name": "Fat4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VBX6-1", "protein_name": "Multiple PDZ domain protein", "gene_name": "Mpdz", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "E9PVD3", "url": "https://www.uniprot.org/uniprotkb/E9PVD3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19506035", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Fernandez-Friera L, Solis J, Trujillano D, Ossowski S, Estivill X, Dina C, Bruneval P, Chester A, Schott JJ, Irvine KD, Mao Y, Wessels A, Motiwala T, Puceat M, Tsukasaki Y, Menick DR, Kasiganesan H, Nie X, Broome AM, Williams K, Johnson A, Markwald RR, Jeunemaitre X, Hagege A, Levine RA, Milan DJ, Norris RA, Slaugenhaupt SA", "reference": { "type": "PubMed", "id": "26258302", "url": "https://pubmed.ncbi.nlm.nih.gov/26258302" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9PVD3-1", "protein_name": "Protocadherin-16", "gene_name": "Dchs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96JQ0-1", "protein_name": "Protocadherin-16", "gene_name": "DCHS1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "E9PVD3", "url": "https://www.uniprot.org/uniprotkb/E9PVD3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": 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"authors": "Miyasaka Yuki, Kobayashi Takeshi, Gotoh Naoya, Kuga Masako, Kobayashi Misato, Horio Fumihiko, Hashimoto Katsunori, Kawabe Tsutomu, Ohno Tamio", "reference": { "type": "PubMed", "id": "36434174", "url": "https://pubmed.ncbi.nlm.nih.gov/36434174" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9PVD3-1", "protein_name": "Protocadherin-16", "gene_name": "Dchs1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "E9PVD3", "url": "https://www.uniprot.org/uniprotkb/E9PVD3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.36434174", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Genomics", "date": "2008", "authors": "Rampon C, Bouillot S, Climescu-Haulica A, Prandini MH, Cand F, Vandenbrouck Y, Huber P", "reference": { "type": "PubMed", "id": "18477666", "url": "https://pubmed.ncbi.nlm.nih.gov/18477666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O55134-1", "protein_name": "Protocadherin-12", "gene_name": "Pcdh12", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O55134", "url": "https://www.uniprot.org/uniprotkb/O55134" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18477666", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protocadherin-12 deficiency leads to modifications in the structure and function of arteries in mice.", "journal": "Pathol. 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sumoylation regulates multiple aspects of mammalian poly(A) polymerase function.", "journal": "Genes & development", "date": "2008", "authors": "Vethantham V, Rao N, Manley JL", "reference": { "type": "PubMed", "id": "18281463", "url": "https://pubmed.ncbi.nlm.nih.gov/18281463" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61183-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "Papola", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61183", "url": "https://www.uniprot.org/uniprotkb/Q61183" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 444, "end_pos": 445, "sequence_org": "KK", "sequence_mut": "RR", "comment": "Some loss of sumoylation. No change in nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "Q61183", "url": "https://www.uniprot.org/uniprotkb/Q61183" }, { "database": "PubMed", "id": "18281463", "url": "https://pubmed.ncbi.nlm.nih.gov/18281463" } ], "uniprot_canonical_ac": "Q61183-1" }, { "start_pos": 656, "end_pos": 657, "sequence_org": "KK", "sequence_mut": "RR", "comment": "Some loss of sumoylation; Largely localized to the cytoplasm.", "evidence": [ { "database": "UniProtKB", "id": "Q61183", "url": "https://www.uniprot.org/uniprotkb/Q61183" }, { "database": "PubMed", "id": "18281463", "url": "https://pubmed.ncbi.nlm.nih.gov/18281463" } ], "uniprot_canonical_ac": "Q61183-1" } ], "record_id": "pubmed.18281463", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inositol 1,4,5-triphosphate receptor-binding protein released with inositol 1,4,5-triphosphate (IRBIT) associates with components of the mRNA 3' processing machinery in a phosphorylation-dependent manner and inhibits polyadenylation.", "journal": "J. Biol. Chem.", "date": "2009", "authors": "Kiefer H, Mizutani A, Iemura S, Natsume T, Ando H, Kuroda Y, Mikoshiba K", "reference": { "type": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61183-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "Papola", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80SW1-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": "Ahcyl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D824-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "Fip1l1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43865-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": "AHCYL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61183", "url": "https://www.uniprot.org/uniprotkb/Q61183" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 62, "end_pos": 62, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 64, "end_pos": 64, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 66, "end_pos": 66, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases interaction with ITPR1. Slightly decreases phosphorylation. No effect on interaction with SLC4A4. Abolishes interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 68, "end_pos": 68, "sequence_org": "S", "sequence_mut": "A", "comment": "Highly decreases phosphorylation. Abolishes interaction with ITPR1. No effect on interaction with BCL2L10. Marked decrease in interaction of BCL2L10 with ITPR1. Decreased ability of BCL2L10 to reduce ITPR1-mediated calcium release and to prevent apoptosis. No effect on formation of multimers. Abolishes interaction with SLC4A4. Abolishes interaction with FIP1L1. Highly decreases interaction with SLC9A3. Highly decreases interaction with SLC9A3; when associated with A-71 and A-74.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "20584908", "url": "https://pubmed.ncbi.nlm.nih.gov/20584908" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" }, { "database": "PubMed", "id": "27995898", "url": "https://pubmed.ncbi.nlm.nih.gov/27995898" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 70, "end_pos": 70, "sequence_org": "S", "sequence_mut": "A", "comment": "Highly decreases interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Abolishes interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 71, "end_pos": 71, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes interaction with ITPR1. Highly decreases phosphorylation. Abolishes interaction with SLC4A4. Abolishes interaction with FIP1L1. Highly decreases interaction with SLC9A3; when associated with A-68 and A-74.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "20584908", "url": "https://pubmed.ncbi.nlm.nih.gov/20584908" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 72, "end_pos": 72, "sequence_org": "T", "sequence_mut": "A", "comment": "Highly decreases interaction with ITPR1. Slightly increases phosphorylation. No effect on interaction with SLC4A4. Highly decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 74, "end_pos": 74, "sequence_org": "S", "sequence_mut": "G", "comment": "Abolishes interaction with ITPR1. Slightly decreases phosphorylation. Strongly decreases interaction with SLC4A4. Abolishes interaction with FIP1L1. Highly decreases interaction with SLC9A3; when associated with A-68 and A-71.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "20584908", "url": "https://pubmed.ncbi.nlm.nih.gov/20584908" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 76, "end_pos": 76, "sequence_org": "S", "sequence_mut": "G", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 77, "end_pos": 77, "sequence_org": "S", "sequence_mut": "A", "comment": "Highly decreases interaction with ITPR1. Slightly decreases phosphorylation. Strongly decreases interaction with SLC4A4. Abolishes interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 80, "end_pos": 80, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with SLC4A4. Highly decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 82, "end_pos": 82, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 84, "end_pos": 84, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 85, "end_pos": 85, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 90, "end_pos": 90, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 97, "end_pos": 97, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" } ], "record_id": "pubmed.19224921", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complex alternative RNA processing generates an unexpected diversity of poly(A) polymerase isoforms.", "journal": "Mol. Cell. Biol.", "date": "1996", "authors": "Zhao W, Manley JL", "reference": { "type": "PubMed", "id": "8628305", "url": "https://pubmed.ncbi.nlm.nih.gov/8628305" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61183-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "Papola", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61183", "url": "https://www.uniprot.org/uniprotkb/Q61183" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8628305", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The macroPARP genes Parp-9 and Parp-14 are developmentally and differentially regulated in mouse tissues.", "journal": "Dev. 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cardiac myocyte energy homeostasis under hypoxic stress.", "journal": "Am. 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Physiol.", "date": "2010", "authors": "Kimata M, Matoba S, Iwai-Kanai E, Nakamura H, Hoshino A, Nakaoka M, Katamura M, Okawa Y, Mita Y, Okigaki M, Ikeda K, Tatsumi T, Matsubara H", "reference": { "type": "PubMed", "id": "20935145", "url": "https://pubmed.ncbi.nlm.nih.gov/20935145" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BZA9-1", "protein_name": "Fructose-2,6-bisphosphatase TIGAR", "gene_name": "Tigar", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2K8S8-1", "protein_name": "Fructose-2,6-bisphosphatase TIGAR", "gene_name": "Tigar", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BZA9", "url": "https://www.uniprot.org/uniprotkb/Q8BZA9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.20935145", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"2015", "authors": "Jeong BC, Kim TS, Kim HS, Lee SH, Choi Y", "reference": { "type": "PubMed", "id": "25979161", "url": "https://pubmed.ncbi.nlm.nih.gov/25979161" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3U145-1", "protein_name": "Transmembrane protein 64", "gene_name": "Tmem64", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q02248-1", "protein_name": "Catenin beta-1", "gene_name": "Ctnnb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3U145", "url": "https://www.uniprot.org/uniprotkb/Q3U145" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25979161", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "'Srcasm: a novel Src activating and signaling molecule.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Seykora JT, Mei L, Dotto GP, Stein PL", "reference": { "type": "PubMed", "id": "11711534", "url": "https://pubmed.ncbi.nlm.nih.gov/11711534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q923U0-1", "protein_name": "TOM1-like protein 1", "gene_name": "Tom1l1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P26450-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The adaptor protein Tom1L1 is a negative regulator of Src mitogenic signaling induced by growth factors.", "journal": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TOX4 facilitates promoter-proximal pausing and C-terminal domain dephosphorylation of RNA polymerase II in human cells.", "journal": "Communications biology", "date": "2022", "authors": "Liu Z, Wu A, Wu Z, Wang T, Pan Y, Li B, Zhang X, Yu M", "reference": { "type": "PubMed", "id": "35365735", "url": "https://pubmed.ncbi.nlm.nih.gov/35365735" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BU11-1", "protein_name": "TOX high mobility group box family member 4", "gene_name": "Tox4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O94842-1", "protein_name": "TOX high mobility group box family member 4", "gene_name": "TOX4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BU11", "url": "https://www.uniprot.org/uniprotkb/Q8BU11" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.35365735", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tox4 regulates transcriptional elongation and reinitiation during murine T cell development.", "journal": "Commun. Biol.", "date": "2023", "authors": "Wang Talang, Zhao Ruoyu, Zhi Junhong, Liu Ziling, Wu Aiwei, Yang Zimei, Wang Weixu, Ni Ting, Jing Lili, Yu Ming", "reference": { "type": "PubMed", "id": "37286708", "url": "https://pubmed.ncbi.nlm.nih.gov/37286708" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BU11-1", "protein_name": "TOX high mobility group box family member 4", "gene_name": "Tox4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BU11", "url": "https://www.uniprot.org/uniprotkb/Q8BU11" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37286708", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]