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"authors": "Bischof F, Wienhold W, Wirblich C, Malcherek G, Zevering O, Kruisbeek A M, Melms A", "reference": { "type": "PubMed", "id": "11593032", "url": "https://pubmed.ncbi.nlm.nih.gov/11593032" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04370-1", "protein_name": "Myelin basic protein", "gene_name": "Mbp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P60202-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P04370", "url": "https://www.uniprot.org/uniprotkb/P04370" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11593032", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Neurochem.", "date": "1992", "authors": "Grima B, Zelenika D, Pessac B", "reference": { "type": "PubMed", "id": "1279125", "url": "https://pubmed.ncbi.nlm.nih.gov/1279125" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04370-1", "protein_name": "Myelin basic protein", "gene_name": "Mbp", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P04370", "url": "https://www.uniprot.org/uniprotkb/P04370" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1279125", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of a novel transcript of the myelin basic protein gene.", "journal": "J. 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Neurochem.", "date": "1991", "authors": "Aruga J, Okano H, Mikoshiba K", "reference": { "type": "PubMed", "id": "1705957", "url": "https://pubmed.ncbi.nlm.nih.gov/1705957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04370-1", "protein_name": "Myelin basic protein", "gene_name": "Mbp", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P04370", "url": "https://www.uniprot.org/uniprotkb/P04370" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1705957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Presentation of a determinant by MHC class II can be prevented through competitive capture by a flanking determinant on a multideterminant peptide.", "journal": "Journal of autoimmunity", "date": "2008-08", "authors": "Maverakis Emanual, Beech Jonathan T, Schneider Susanne, Sercarz Eli E", "reference": { "type": "PubMed", "id": "18375101", "url": "https://pubmed.ncbi.nlm.nih.gov/18375101" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04370-1", "protein_name": "Myelin basic protein", "gene_name": "Mbp", "tax_name": "Mouse" } ], "species": [ { "name": 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Chem.", "date": "1993", "authors": "Campagnoni A T, Pribyl T M, Campagnoni C W, Kampf K, Amur-Umarjee S, Landry C F, Handley V W, Newman S L, Garbay B, Kitamura K", "reference": { "type": "PubMed", "id": "7680345", "url": "https://pubmed.ncbi.nlm.nih.gov/7680345" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04370-1", "protein_name": "Myelin basic protein", "gene_name": "Mbp", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P04370", "url": "https://www.uniprot.org/uniprotkb/P04370" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7680345", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel isoforms of mouse myelin basic protein predominantly expressed in embryonic stage.", "journal": "J. 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"journal": "Advanced science (Weinheim, Baden-Wurttemberg, Germany)", "date": "2024-08", "authors": "Zhang Lu, Fang Zhengying, Zhu Qingqing, Yang Shumin, Fu Jia, Sun Zeguo, Lu Geming, Wei Chengguo, Zhang Zhi, Lee Kyung, Zhong Yifei, Liu Ruijie, He John Cijiang", "reference": { "type": "PubMed", "id": "38816950", "url": "https://pubmed.ncbi.nlm.nih.gov/38816950" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P61750-1", "protein_name": "ADP-ribosylation factor 4", "gene_name": "Arf4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O95992-1", "protein_name": "Cholesterol 25-hydroxylase", "gene_name": "CH25H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18085-1", "protein_name": "ADP-ribosylation factor 4", "gene_name": "ARF4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P61750", "url": "https://www.uniprot.org/uniprotkb/P61750" } ], "common_name": "Mouse", 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Biochem.", "date": "1996", "authors": "Hosaka M, Toda K, Takatsu H, Torii S, Murakami K, Nakayama K", "reference": { "type": "PubMed", "id": "8947846", "url": "https://pubmed.ncbi.nlm.nih.gov/8947846" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P61750-1", "protein_name": "ADP-ribosylation factor 4", "gene_name": "Arf4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BSL7-1", "protein_name": "ADP-ribosylation factor 2", "gene_name": "Arf2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P61205-1", "protein_name": "ADP-ribosylation factor 3", "gene_name": "Arf3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62331-1", "protein_name": "ADP-ribosylation factor 6", "gene_name": "Arf6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84078-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "Arf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84084-1", "protein_name": "ADP-ribosylation factor 5", "gene_name": "Arf5", 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J. Neurosci.", "date": "2000", "authors": "Stichel C C, Augustin M, K\u00fchn K, Zhu X R, Engels P, Ullmer C, L\u00fcbbert H", "reference": { "type": "PubMed", "id": "11122330", "url": "https://pubmed.ncbi.nlm.nih.gov/11122330" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WVS6-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WVS6", "url": "https://www.uniprot.org/uniprotkb/Q9WVS6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11122330", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential expression and tissue distribution of parkin isoforms during mouse development.", "journal": "Brain Res. 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"uniprot_canonical_ac": "Q7YU24-1", "protein_name": "Transmembrane GTPase Marf", "gene_name": "Marf", "tax_name": "Fruit fly" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WVS6", "url": "https://www.uniprot.org/uniprotkb/Q9WVS6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24192653", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Synaptotagmin-11 is a critical mediator of parkin-linked neurotoxicity and Parkinson's disease-like pathology.", "journal": "Nature communications", "date": "2018", "authors": "Wang C, Kang X, Zhou L, Chai Z, Wu Q, Huang R, Xu H, Hu M, Sun X, Sun S, Li J, Jiao R, Zuo P, Zheng L, Yue Z, Zhou Z", "reference": { "type": "PubMed", "id": "29311685", "url": "https://pubmed.ncbi.nlm.nih.gov/29311685" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WVS6-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08835-1", "protein_name": "Synaptotagmin-11", "gene_name": "Syt11", "tax_name": "Rat" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9R0N3-1", "protein_name": "Synaptotagmin-11", "gene_name": "Syt11", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WVS6", "url": "https://www.uniprot.org/uniprotkb/Q9WVS6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.29311685", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of Parkin at serine 131 by p38 MAPK promotes mitochondrial dysfunction and neuronal death in mutant A53T \u03b1-synuclein model of Parkinson's disease.", "journal": "Cell death & disease", "date": "2018-06-13", "authors": "Chen Jialong, Ren Yixian, Gui Chen, Zhao Menglan, Wu Xian, Mao Kanmin, Li Wenjun, Zou Fei", "reference": { "type": "PubMed", "id": "29899409", "url": "https://pubmed.ncbi.nlm.nih.gov/29899409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WVS6-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WVS6", "url": "https://www.uniprot.org/uniprotkb/Q9WVS6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 65, "end_pos": 65, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PINK1", "evidence": [ { "database": "UniProtKB", "id": "Q9WVS6", "url": "https://www.uniprot.org/uniprotkb/Q9WVS6" }, { "database": "IntAct", "id": "Q9WVS6", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9WVS6*" }, { "database": "iPTMnet", "id": "Q9WVS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVS6" }, { "database": "PubMed", "id": "29899409", "url": "https://pubmed.ncbi.nlm.nih.gov/29899409" }, { "database": "PubMed", "id": "35145192", "url": "https://pubmed.ncbi.nlm.nih.gov/35145192" } ], "site_lbl": "Ser65", "uniprot_canonical_ac": "Q9WVS6-1" } ], "record_id": "pubmed.29899409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Decision between mitophagy and apoptosis by Parkin via VDAC1 ubiquitination.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2020", "authors": "Ham SJ, Lee D, Yoo H, Jun K, Shin H, Chung J", "reference": { "type": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WVS6-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q94920-1", "protein_name": "Voltage-dependent anion-selective channel", "gene_name": "porin", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7KTX7-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "park", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21796-1", "protein_name": "Non-selective voltage-gated ion channel VDAC1", "gene_name": "VDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXM7-1", "protein_name": "Serine/threonine-protein kinase PINK1, mitochondrial", "gene_name": "PINK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q60932-1", "protein_name": "Non-selective voltage-gated ion channel VDAC1", "gene_name": "Vdac1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WVS6", "url": "https://www.uniprot.org/uniprotkb/Q9WVS6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 109, "end_pos": 109, "sequence_org": "K", "sequence_mut": "R", "comment": "Poly-KR; increase in apoptosis when overexpressed in muscle cells, resulting in wing posture abnormalities; when associated with R-11, R-19 and R-52.", "evidence": [ { "database": "UniProtKB", "id": "Q94920", "url": "https://www.uniprot.org/uniprotkb/Q94920" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "Q94920-1" }, { "start_pos": 11, "end_pos": 11, "sequence_org": "K", "sequence_mut": "R", "comment": "Poly-KR; increase in apoptosis when overexpressed in muscle cells, resulting in wing posture abnormalities; when associated with R-19, R-52 and R-109.", "evidence": [ { "database": "UniProtKB", "id": "Q94920", "url": "https://www.uniprot.org/uniprotkb/Q94920" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "Q94920-1" }, { "start_pos": 19, "end_pos": 19, "sequence_org": "K", "sequence_mut": "R", "comment": "Poly-KR; increase in apoptosis when overexpressed in muscle cells, resulting in wing posture abnormalities; when associated with R-11, R-52 and R-109.", "evidence": [ { "database": "UniProtKB", "id": "Q94920", "url": "https://www.uniprot.org/uniprotkb/Q94920" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "Q94920-1" }, { "start_pos": 273, "end_pos": 273, "sequence_org": "K", "sequence_mut": "R", "comment": "Significant increase in apoptosis when overexpressed in muscle cells, resulting in severe wing posture abnormalities and impaired climbing ability.", "evidence": [ { "database": "UniProtKB", "id": "Q94920", "url": "https://www.uniprot.org/uniprotkb/Q94920" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "Q94920-1" }, { "start_pos": 52, "end_pos": 52, "sequence_org": "K", "sequence_mut": "R", "comment": "Poly-KR; increase in apoptosis when overexpressed in muscle cells, resulting in wing posture abnormalities; when associated with R-11, R-19 and R-109.", "evidence": [ { "database": "UniProtKB", "id": "Q94920", "url": "https://www.uniprot.org/uniprotkb/Q94920" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "Q94920-1" }, { "start_pos": 433, "end_pos": 433, "sequence_org": "T", "sequence_mut": "N", "comment": "Fails to rescue mitochondrial abnormalities and increases apoptosis in null mutants.", "evidence": [ { "database": "UniProtKB", "id": "Q7KTX7", "url": "https://www.uniprot.org/uniprotkb/Q7KTX7" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "Q7KTX7-1" }, { "start_pos": 449, "end_pos": 449, "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of monoubiquitination and polyubiquitination of porin.", "evidence": [ { "database": "UniProtKB", "id": "Q7KTX7", "url": "https://www.uniprot.org/uniprotkb/Q7KTX7" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "Q7KTX7-1" }, { "start_pos": 431, "end_pos": 431, "sequence_org": "C", "sequence_mut": "S", "comment": "Impairs the ability to ubiquitinate target proteins. No effect on translocation to mitochondria.", "evidence": [ { "database": "UniProtKB", "id": "O60260", "url": "https://www.uniprot.org/uniprotkb/O60260" }, { "database": "PubMed", "id": "23727886", "url": "https://pubmed.ncbi.nlm.nih.gov/23727886" }, { "database": "PubMed", "id": "11590439", "url": "https://pubmed.ncbi.nlm.nih.gov/11590439" }, { "database": "PubMed", "id": "23770887", "url": "https://pubmed.ncbi.nlm.nih.gov/23770887" }, { "database": "PubMed", "id": "25474007", "url": "https://pubmed.ncbi.nlm.nih.gov/25474007" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "O60260-1" }, { "start_pos": 109, "end_pos": 110, "sequence_org": "KK", "sequence_mut": "RR", "comment": "PRKN-dependent polybiquitination is decreased, whereas PRKN-dependent monoubiquitination, mitochondrial calcium uptake and apoptosis are unaffected; when associated with R-12; R-20 and R-53.", "evidence": [ { "database": "UniProtKB", "id": "P21796", "url": "https://www.uniprot.org/uniprotkb/P21796" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "P21796-1" }, { "start_pos": 12, "end_pos": 12, "sequence_org": "K", "sequence_mut": "R", "comment": "PRKN-dependent polybiquitination is decreased, whereas PRKN-dependent monoubiquitination, mitochondrial calcium uptake and apoptosis are unaffected; when associated with R-20; R-53 and 109-R-R-110.", "evidence": [ { "database": "UniProtKB", "id": "P21796", "url": "https://www.uniprot.org/uniprotkb/P21796" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "P21796-1" }, { "start_pos": 20, "end_pos": 20, "sequence_org": "K", "sequence_mut": "R", "comment": "PRKN-dependent polybiquitination is decreased, whereas PRKN-dependent monoubiquitination, mitochondrial calcium uptake and apoptosis are unaffected; when associated with R-12; R-53 and 109-R-R-110.", "evidence": [ { "database": "UniProtKB", "id": "P21796", "url": "https://www.uniprot.org/uniprotkb/P21796" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "P21796-1" }, { "start_pos": 274, "end_pos": 274, "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of PRKN-dependent monoubiquitination increases mitochondria calcium uptake, and ultimately increased apoptosis. Consequently, mitochondria are swelled with defective cristae structures. PRKN-dependent polyubiquitination is unaffected.", "evidence": [ { "database": "UniProtKB", "id": "P21796", "url": "https://www.uniprot.org/uniprotkb/P21796" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "P21796-1" }, { "start_pos": 53, "end_pos": 53, "sequence_org": "K", "sequence_mut": "R", "comment": "PRKN-dependent polybiquitination is decreased, whereas PRKN-dependent monoubiquitination, mitochondrial calcium uptake and apoptosis are unaffected; when associated with R-12; R-20 and 109-R-R-110.", "evidence": [ { "database": "UniProtKB", "id": "P21796", "url": "https://www.uniprot.org/uniprotkb/P21796" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" } ], "uniprot_canonical_ac": "P21796-1" }, { "start_pos": 219, "end_pos": 219, "sequence_org": "K", "sequence_mut": "M", "comment": "Loss of enzyme activity and impaired localization of PRKN to mitochondria; when associated with A-362 and A-384.", "evidence": [ { "database": "UniProtKB", "id": "Q9BXM7", "url": "https://www.uniprot.org/uniprotkb/Q9BXM7" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" }, { "database": "PubMed", "id": "18957282", "url": "https://pubmed.ncbi.nlm.nih.gov/18957282" } ], "uniprot_canonical_ac": "Q9BXM7-1" }, { "start_pos": 362, "end_pos": 362, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes MFN2 phosphorylation and interaction with PRKN; when associated with A-219 and A-384. Loss of enzyme activity and impaired localization of PRKN to mitochondria; when associated with M-219 and A-384.", "evidence": [ { "database": "UniProtKB", "id": "Q9BXM7", "url": "https://www.uniprot.org/uniprotkb/Q9BXM7" }, { "database": "PubMed", "id": "23620051", "url": "https://pubmed.ncbi.nlm.nih.gov/23620051" }, { "database": "PubMed", "id": "32047033", "url": "https://pubmed.ncbi.nlm.nih.gov/32047033" }, { "database": "PubMed", "id": "18957282", "url": "https://pubmed.ncbi.nlm.nih.gov/18957282" } ], "uniprot_canonical_ac": "Q9BXM7-1" }, { "start_pos": 384, "end_pos": 384, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes MFN2 phosphorylation and interaction with PRKN; when associated with A-219 and A-362. 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inflammasome contributing to SARS-CoV-2-induced hyperinflammation.", "journal": "Frontiers in cellular and infection microbiology", "date": "2023", "authors": "Li Jingfei, Lin Haotian, Fan Tinghui, Huang Linfei, Zhang Xinyong, Tai Yanhong, Fang Yi, Li Qihong, Zhao Ruzhou, Wang Penghao, Zhou Li, Wan Luming, Wu Yuhua, Zhong Hui, Wei Congwen, Yang Xiaopan", "reference": { "type": "PubMed", "id": "36936774", "url": "https://pubmed.ncbi.nlm.nih.gov/36936774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99LJ2-1", "protein_name": "Ankyrin repeat and BTB/POZ domain-containing protein 1", "gene_name": "Abtb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99LJ2", "url": "https://www.uniprot.org/uniprotkb/Q99LJ2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.36936774", "abstract": "", "glycosylation": 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Jacobs J F, Fu Y, Pan H Q, Roe B A, Imreh S, Dumanski J P", "reference": { "type": "PubMed", "id": "10329004", "url": "https://pubmed.ncbi.nlm.nih.gov/10329004" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88746-1", "protein_name": "Target of Myb1 membrane trafficking protein", "gene_name": "Tom1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UGU5-1", "protein_name": "HMG domain-containing protein 4", "gene_name": "HMGXB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60784-1", "protein_name": "Target of Myb1 membrane trafficking protein", "gene_name": "TOM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75674-1", "protein_name": "TOM1-like protein 1", "gene_name": "TOM1L1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O88746", "url": "https://www.uniprot.org/uniprotkb/O88746" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": 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Kallioinen M, Sormunen R, Rinne JO, Johansson J, Alakurtti K, Huilaja L, Hurskainen T, Tasanen K, Anttila E, Marques TR, Howes O, Politis M, Fahiminiya S, Nguyen KQ, Majewski J, Uusimaa J, Sheridan E, Brandon NJ", "reference": { "type": "PubMed", "id": "27058446", "url": "https://pubmed.ncbi.nlm.nih.gov/27058446" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CA95-1", "protein_name": "cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A", "gene_name": "Pde10a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y233-3", "protein_name": "cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A", "gene_name": "PDE10A", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CA95", "url": "https://www.uniprot.org/uniprotkb/Q8CA95" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 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