[ { "title": "The PRA1 gene family in Arabidopsis.", "journal": "Plant Physiol.", "date": "2008", "authors": "Alvim Kamei Claire Lessa, Boruc Joanna, Vandepoele Klaas, Van den Daele Hilde, Maes Sara, Russinova Eugenia, Inz\u00e9 Dirk, De Veylder Lieven", "reference": { "type": "PubMed", "id": "18583532", "url": "https://pubmed.ncbi.nlm.nih.gov/18583532" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYN0-1", "protein_name": "PRA1 family protein B1", "gene_name": "PRA1B1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYQ4-1", "protein_name": "PRA1 family protein B6", "gene_name": "PRA1B6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93829-1", "protein_name": "PRA1 family protein D", "gene_name": "PRA1D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M012-1", "protein_name": "PRA1 family protein B5", "gene_name": "PRA1B5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZM7-1", "protein_name": "PRA1 family protein A1", "gene_name": "PRA1A1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LFP1-1", "protein_name": "PRA1 family protein H", "gene_name": "PRA1H", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C889-1", "protein_name": "PRA1 family protein F2", "gene_name": "PRA1F2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIC6-1", "protein_name": "PRA1 family protein F3", "gene_name": "PRA1F3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIY7-1", "protein_name": "PRA1 family protein B2", "gene_name": "PRA1B2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80915-1", "protein_name": "PRA1 family protein B4", "gene_name": "PRA1B4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1G3K7-1", "protein_name": "PRA1 family protein C", "gene_name": "PRA1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWC3-1", "protein_name": "PRA1 family protein A2", "gene_name": "PRA1A2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W115-1", "protein_name": "PRA1 family protein A3", "gene_name": "PRA1A3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FH16-1", "protein_name": "PRA1 family protein G2", "gene_name": "PRA1G2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLB6-1", "protein_name": "PRA1 family protein B3", "gene_name": "PRA1B3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FRR1-1", "protein_name": "PRA1 family protein E", "gene_name": "PRA1E", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZ63-1", "protein_name": "PRA1 family protein F1", "gene_name": "PRA1F1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIC7-1", "protein_name": "PRA1 family protein F4", "gene_name": "PRA1F4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWD1-1", "protein_name": "PRA1 family protein G1", "gene_name": "PRA1G1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYN0", "url": "https://www.uniprot.org/uniprotkb/Q9LYN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18583532", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Diversification of genes encoding mei2 -like RNA binding proteins in plants.", "journal": "Plant Mol. Biol.", "date": "2004", "authors": "Anderson Garrett H, Alvarez Nena D G, Gilman Carmel, Jeffares Daniel C, Trainor Vernon C W, Hanson Maureen R, Veit Bruce", "reference": { "type": "PubMed", "id": "15356386", "url": "https://pubmed.ncbi.nlm.nih.gov/15356386" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYN7-1", "protein_name": "Protein MEI2-like 4", "gene_name": "ML4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJG8-1", "protein_name": "Protein MEI2-like 2", "gene_name": "ML2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVV9-1", "protein_name": "Protein MEI2-like 3", "gene_name": "ML3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWF5-1", "protein_name": "Protein MEI2-like 5", "gene_name": "ML5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4I9-1", "protein_name": "Protein MEI2-like 1", "gene_name": "ML1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYN7", "url": "https://www.uniprot.org/uniprotkb/Q9LYN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15356386", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis Mei2 homologue AML1 binds AtRaptor1B, the plant homologue of a major regulator of eukaryotic cell growth.", "journal": "BMC plant biology", "date": "2005-02-21", "authors": "Anderson Garrett H, Hanson Maureen R", "reference": { "type": "PubMed", "id": "15720729", "url": "https://pubmed.ncbi.nlm.nih.gov/15720729" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYN7-1", "protein_name": "Protein MEI2-like 4", "gene_name": "ML4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJG8-1", "protein_name": "Protein MEI2-like 2", "gene_name": "ML2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVV9-1", "protein_name": "Protein MEI2-like 3", "gene_name": "ML3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWF5-1", "protein_name": "Protein MEI2-like 5", "gene_name": "ML5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4I9-1", "protein_name": "Protein MEI2-like 1", "gene_name": "ML1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93YQ1-1", "protein_name": "Regulatory-associated protein of TOR 1", "gene_name": "RAPTOR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYN7", "url": "https://www.uniprot.org/uniprotkb/Q9LYN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15720729", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis-mei2-like genes play a role in meiosis and vegetative growth in Arabidopsis.", "journal": "The Plant cell", "date": "2006-03", "authors": "Kaur Jagreet, Sebastian Jose, Siddiqi Imran", "reference": { "type": "PubMed", "id": "16473967", "url": "https://pubmed.ncbi.nlm.nih.gov/16473967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYN7-1", "protein_name": "Protein MEI2-like 4", "gene_name": "ML4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJG8-1", "protein_name": "Protein MEI2-like 2", "gene_name": "ML2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVV9-1", "protein_name": "Protein MEI2-like 3", "gene_name": "ML3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWF5-1", "protein_name": "Protein MEI2-like 5", "gene_name": "ML5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4I9-1", "protein_name": "Protein MEI2-like 1", "gene_name": "ML1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYN7", "url": "https://www.uniprot.org/uniprotkb/Q9LYN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16473967", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An Arabidopsis Rhomboid homolog is an intramembrane protease in plants.", "journal": "FEBS Lett.", "date": "2005", "authors": "Kanaoka Masahiro M, Urban Sinisa, Freeman Matthew, Okada Kiyotaka", "reference": { "type": "PubMed", "id": "16223493", "url": "https://pubmed.ncbi.nlm.nih.gov/16223493" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYP1-1", "protein_name": "RHOMBOID-like protein 3", "gene_name": "RBL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WQX7-1", "protein_name": "RHOMBOID-like protein 1", "gene_name": "RBL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAN1-1", "protein_name": "RHOMBOID-like protein 2", "gene_name": "RBL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I8K2-1", "protein_name": "Inactive RHOMBOID-like protein 8", "gene_name": "KOM", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSR0-1", "protein_name": "RHOMBOID-like protein 5", "gene_name": "RBL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ48-1", "protein_name": "RHOMBOID-like protein 6, mitochondrial", "gene_name": "RBL6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JBM4-1", "protein_name": "RHOMBOID-like protein 4", "gene_name": "RBL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82756-1", "protein_name": "RHOMBOID-like protein 7", "gene_name": "RBL7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYP1", "url": "https://www.uniprot.org/uniprotkb/Q9LYP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16223493", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"Protease gene families in Populus and Arabidopsis.", "journal": "BMC Plant Biol.", "date": "2006", "authors": "Garc\u00eda-Lorenzo Maribel, Sj\u00f6din Andreas, Jansson Stefan, Funk Christiane", "reference": { "type": "PubMed", "id": "17181860", "url": "https://pubmed.ncbi.nlm.nih.gov/17181860" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYP1-1", "protein_name": "RHOMBOID-like protein 3", "gene_name": "RBL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WQX7-1", "protein_name": "RHOMBOID-like protein 1", "gene_name": "RBL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAN1-1", "protein_name": "RHOMBOID-like protein 2", "gene_name": "RBL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I8K2-1", "protein_name": "Inactive RHOMBOID-like protein 8", "gene_name": "KOM", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1B5-1", "protein_name": "RHOMBOID-like protein 13", "gene_name": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rhomboid proteases in plants - still in square one?", "journal": "Physiologia plantarum", "date": "2012-05", "authors": "Knopf Ronit Rimon, Adam Zach", "reference": { "type": "PubMed", "id": "22007993", "url": "https://pubmed.ncbi.nlm.nih.gov/22007993" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYP1-1", "protein_name": "RHOMBOID-like protein 3", "gene_name": "RBL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WQX7-1", "protein_name": "RHOMBOID-like protein 1", "gene_name": "RBL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAN1-1", "protein_name": "RHOMBOID-like protein 2", "gene_name": "RBL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I8K2-1", "protein_name": "Inactive RHOMBOID-like protein 8", "gene_name": "KOM", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1B5-1", "protein_name": "RHOMBOID-like protein 13", "gene_name": "RBL13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSR0-1", "protein_name": "RHOMBOID-like protein 5", "gene_name": "RBL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ48-1", "protein_name": "RHOMBOID-like protein 6, mitochondrial", "gene_name": "RBL6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB17-1", "protein_name": "Rhomboid-like protein 15", "gene_name": "RBL15", "tax_name": "Mouse-ear 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"RBL10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYP1", "url": "https://www.uniprot.org/uniprotkb/Q9LYP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22007993", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rhomboid proteins in the chloroplast envelope affect the level of allene oxide synthase in Arabidopsis thaliana.", "journal": "Plant J.", "date": "2012", "authors": "Knopf Ronit Rimon, Feder Ari, Mayer Kristin, Lin Albina, Rozenberg Mor, Schaller Andreas, Adam Zach", "reference": { "type": "PubMed", "id": "22738221", "url": "https://pubmed.ncbi.nlm.nih.gov/22738221" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYP1-1", "protein_name": "RHOMBOID-like protein 3", "gene_name": "RBL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84MB5-1", "protein_name": "Rhomboid-like protein 11, chloroplastic", "gene_name": "RBL11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZ81-1", "protein_name": "RHOMBOID-like protein 12, mitochondrial", "gene_name": "RBL12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4ICF4-1", "protein_name": "RHOMBOID-like protein 10, chloroplastic", "gene_name": "RBL10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYP1", "url": "https://www.uniprot.org/uniprotkb/Q9LYP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22738221", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of an Arabidopsis thaliana protein family, structurally related to cytochromes b561 and potentially involved in catecholamine biochemistry in plants.", "journal": "Journal of plant physiology", "date": "2004-02", "authors": "Verelst Wim, Asard Han", "reference": { "type": "PubMed", "id": "15022831", "url": "https://pubmed.ncbi.nlm.nih.gov/15022831" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYS9-1", "protein_name": "Cytochrome b561 and DOMON 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis thaliana CYP77A4 is the first cytochrome P450 able to catalyze the epoxidation of free fatty acids in plants.", "journal": "The FEBS journal", "date": "2009-02", "authors": "Sauveplane Vincent, Kandel Sylvie, Kastner Pierre-Edouard, Ehlting J\u00fcrgen, Compagnon Vincent, Werck-Reichhart Dani\u00e8le, Pinot Franck", "reference": { "type": "PubMed", "id": "19120447", "url": "https://pubmed.ncbi.nlm.nih.gov/19120447" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZ31-1", "protein_name": "Cytochrome P450 77A4", "gene_name": "CYP77A4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZ31", "url": "https://www.uniprot.org/uniprotkb/Q9LZ31" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19120447", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K2U8-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 8", "gene_name": "CAND8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AH1-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 2", "gene_name": "CAND2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZQX7-1", "protein_name": "Protein LIFEGUARD 3", "gene_name": "LFG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1V9-1", "protein_name": "Protein LIFEGUARD 2", "gene_name": "LFG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZ39", "url": "https://www.uniprot.org/uniprotkb/Q9LZ39" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17064408", "abstract": "", "glycosylation": [], "mutagenesis": [], 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in-vivo protein coupling.", "journal": "Genome biology", "date": "2008", "authors": "Gookin Timothy E, Kim Junhyong, Assmann Sarah M", "reference": { "type": "PubMed", "id": "18671868", "url": "https://pubmed.ncbi.nlm.nih.gov/18671868" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZ39-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 6", "gene_name": "CAND6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JY11-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 7", "gene_name": "CAND7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K2U8-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 8", "gene_name": "CAND8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AH1-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 2", "gene_name": "CAND2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZ39", "url": "https://www.uniprot.org/uniprotkb/Q9LZ39" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18671868", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SIAMESE, a plant-specific cell cycle regulator, controls endoreplication onset in Arabidopsis thaliana.", "journal": "Plant Cell", "date": "2006", "authors": "Churchman Michelle L, Brown Matthew L, Kato Naohiro, Kirik Viktor, H\u00fclskamp Martin, Inz\u00e9 Dirk, De Veylder Lieven, Walker Jason D, Zheng Zhengui, Oppenheimer David G, Gwin Taylor, Churchman Jason, Larkin John C", "reference": { "type": "PubMed", "id": "17098811", "url": "https://pubmed.ncbi.nlm.nih.gov/17098811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZ60-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR3", "gene_name": "SMR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGE2-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR2", "gene_name": "SMR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPP4-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR1", "gene_name": "SMR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZ78-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SIM", "gene_name": "SIM", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZ60", "url": "https://www.uniprot.org/uniprotkb/Q9LZ60" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17098811", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana.", "journal": "Mol. Syst. Biol.", "date": "2010", "authors": "Van Leene Jelle, Hollunder Jens, Eeckhout Dominique, Persiau Geert, Van De Slijke Eveline, Stals Hilde, Van Isterdael Gert, Verkest Aurine, Neirynck Sandy, Buffel Yelle, De Bodt Stefanie, Maere Steven, Laukens Kris, Pharazyn Anne, Ferreira Paulo C G, Eloy Nubia, Renne Charlotte, Meyer Christian, Faure Jean-Denis, Steinbrenner Jens, Beynon Jim, Larkin John C, Van de Peer Yves, Hilson Pierre, Kuiper Martin, De Veylder Lieven, Van Onckelen Harry, Inz\u00e9 Dirk, Witters Erwin, De Jaeger Geert", "reference": { "type": "PubMed", "id": "20706207", "url": "https://pubmed.ncbi.nlm.nih.gov/20706207" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZ60-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR3", "gene_name": "SMR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SFW6-1", "protein_name": "Cyclin-B2-4", "gene_name": "CYCB2-4; CYCB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJJ5-1", "protein_name": "Cyclin-dependent kinases regulatory subunit 2", "gene_name": "CKS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAD3-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR8", "gene_name": "SMR8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKN7-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR11", "gene_name": "SMR11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKP4-1", "protein_name": "Kinesin-like protein KIN-14B", "gene_name": "KAC2; KIN14B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZP8-1", "protein_name": "Eukaryotic translation initiation factor 4B3", "gene_name": "EIF4B3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LAD0-1", "protein_name": "Probable pyridoxal 5'-phosphate synthase subunit PDX2", "gene_name": "PDX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGE2-1", "protein_name": 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"Mouse-ear cress" }, { "uniprot_canonical_ac": "P25859-1", "protein_name": "Cyclin-dependent kinase B1-1", "gene_name": "CDKB1-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPP4-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR1", "gene_name": "SMR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNX4-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SMR5", "gene_name": "SMR5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU93-1", "protein_name": "Mitotic spindle checkpoint protein MAD2", "gene_name": "MAD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZ78-1", "protein_name": "Cyclin-dependent protein kinase inhibitor SIM", "gene_name": "SIM", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZ60", "url": "https://www.uniprot.org/uniprotkb/Q9LZ60" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20706207", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Biol.", "date": "2004", "authors": "Kende Hans, Bradford Kent, Brummell David, Cho Hyung-Taeg, Cosgrove Daniel, Fleming Andrew, Gehring Chris, Lee Yi, McQueen-Mason Simon, Rose Jocelyn, Voesenek Laurentius A C J", "reference": { "type": "PubMed", "id": "15604683", "url": "https://pubmed.ncbi.nlm.nih.gov/15604683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZ99-1", "protein_name": "Expansin-A9", "gene_name": "EXPA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M203-1", "protein_name": "Expansin-B5", "gene_name": "EXPB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZT4-1", "protein_name": "Expansin-like A1", "gene_name": "EXLA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKU2-1", "protein_name": "Expansin-B1", "gene_name": "EXPB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0I2-1", "protein_name": "Expansin-B3", "gene_name": "EXPB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZT5-1", "protein_name": "Expansin-like A3", "gene_name": "EXLA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S9-1", "protein_name": "Expansin-A16", "gene_name": "EXPA16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9P0-1", "protein_name": "Expansin-A13", "gene_name": "EXPA13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHD1-1", "protein_name": "Expansin-B4", "gene_name": "EXPB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHY6-1", "protein_name": "Putative expansin-B2", "gene_name": "EXPB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IBJ3-1", "protein_name": "Expansin-B6", "gene_name": "EXPB6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48818-1", "protein_name": "Expansin-A4", "gene_name": "EXPA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVE5-1", "protein_name": "Expansin-like A2", "gene_name": "EXLA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZM1-1", "protein_name": "Expansin-A20", "gene_name": "EXPA20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMA0-1", "protein_name": "Expansin-A14", "gene_name": "EXPA14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDR9-1", "protein_name": "Expansin-A10", "gene_name": "EXPA10; SDG35", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZSI1-1", "protein_name": "Putative expansin-A17", "gene_name": "EXPA17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C554-1", "protein_name": "Expansin-A1", "gene_name": "EXPA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80932-1", "protein_name": "Expansin-A3", "gene_name": "EXP3; EXPA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22874-1", "protein_name": "Expansin-A8", "gene_name": "EXPA8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80622-1", "protein_name": "Expansin-A15", "gene_name": "EXPA15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38864-1", "protein_name": "Expansin-A5", "gene_name": "EXPA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38865-1", "protein_name": "Expansin-A6", "gene_name": "EXPA6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38866-1", "protein_name": "Expansin-A2", "gene_name": "EXPA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23547-1", "protein_name": "Expansin-like B1", "gene_name": "EXLB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDJ3-1", "protein_name": "Expansin-A12", "gene_name": "EXPA12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNU3-1", "protein_name": "Expansin-A11", "gene_name": "EXPA11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL76-1", "protein_name": "Expansin-A24", "gene_name": "EXPA24", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL77-1", "protein_name": "Expansin-A25", "gene_name": "EXPA25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL78-1", "protein_name": "Putative expansin-A26", "gene_name": "EXPA26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL79-1", "protein_name": "Expansin-A23", "gene_name": "EXPA23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL80-1", "protein_name": "Expansin-A22", "gene_name": "EXPA22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL81-1", "protein_name": "Expansin-A21", "gene_name": "EXPA21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LN94-1", "protein_name": "Expansin-A7", "gene_name": "EXPA7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ07-1", "protein_name": "Expansin-A18", "gene_name": "EXPA18", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZ99", "url": "https://www.uniprot.org/uniprotkb/Q9LZ99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15604683", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.", "journal": "PLoS ONE", "date": "2008", "authors": "Zybailov Boris, Rutschow Heidi, Friso Giulia, Rudella Andrea, Emanuelsson Olof, Sun Qi, van Wijk Klaas J", "reference": { "type": "PubMed", "id": "18431481", "url": "https://pubmed.ncbi.nlm.nih.gov/18431481" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZB8-1", "protein_name": "ABC transporter B family member 29, chloroplastic", "gene_name": "ABCB29", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S720-1", "protein_name": "PsbP domain-containing protein 3, chloroplastic", "gene_name": "PPD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P82715-1", "protein_name": "PsbP domain-containing protein 5, chloroplastic", "gene_name": "PPD5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P82869-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic", "gene_name": "CYP37", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WMY5-1", "protein_name": "Pentatricopeptide repeat-containing protein At5g04810, chloroplastic", "gene_name": "PPR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P49107-1", "protein_name": "Photosystem I reaction center subunit N, chloroplastic", "gene_name": "PSAN", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q41932-1", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "gene_name": "PSBQ2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NLC1-1", "protein_name": "ABC transporter D family member 2, chloroplastic", "gene_name": "ABCC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYR5-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic", "gene_name": "FKBP19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXX5-1", "protein_name": "PsbP domain-containing protein 6, chloroplastic", "gene_name": "PPD6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0S5-1", "protein_name": "Isoamylase 3, chloroplastic", "gene_name": "ISA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22832-1", "protein_name": "Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic", "gene_name": "FAB2; SSI2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWV0-1", "protein_name": "Transketolase-1, chloroplastic", "gene_name": "TKL-1; TKL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22682-1", "protein_name": "S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent), chloroplastic", "gene_name": "CS26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22914-1", "protein_name": "Calvin cycle protein CP12-1, chloroplastic", "gene_name": "CP12-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I1G5-1", "protein_name": "Cold-regulated 413 inner membrane protein 2, chloroplastic", "gene_name": "COR413IM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23365-1", "protein_name": "Cytochrome P450 97B3, chloroplastic", "gene_name": "CYP97B3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49292-1", "protein_name": "PsbP domain-containing protein 4, chloroplastic", "gene_name": "PPD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65271-1", "protein_name": "Bifunctional protein FolD 4, chloroplastic", "gene_name": "FOLD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80634-1", "protein_name": "Photosynthetic NDH subunit of lumenal location 1, chloroplastic", "gene_name": "PNSL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFC7-1", "protein_name": "Alanine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "EMB1030; EMB86", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L735-1", "protein_name": "Isoamylase 2, chloroplastic", "gene_name": "ISA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPJ5-1", "protein_name": "Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial", "gene_name": "T15N1.80", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94F00-1", "protein_name": "Phosphatase IMPL1, chloroplastic", "gene_name": "IMPL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94K73-1", "protein_name": "Phenylalanine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "F9D24.50", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNM5-1", "protein_name": "Translation factor GUF1 homolog, chloroplastic", "gene_name": "T2K12.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIK9-1", "protein_name": "ATP sulfurylase 1, chloroplastic", "gene_name": "APS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M879-1", "protein_name": "Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic", "gene_name": "S-ACP-DES5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHE8-1", "protein_name": "Photosystem I reaction center subunit III, chloroplastic", "gene_name": "PSAF", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUR7-1", "protein_name": "Arginine biosynthesis bifunctional protein ArgJ, chloroplastic", "gene_name": "F3G5.29", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZVL6-1", "protein_name": "UPF0603 protein At1g54780, chloroplastic", "gene_name": "T22H22.19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RY46-1", "protein_name": "ABC transporter B family member 26, chloroplastic", "gene_name": "ABCB26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY52-1", "protein_name": "PsbP domain-containing protein 2, chloroplastic", "gene_name": "PPD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22773-1", "protein_name": "Thylakoid lumenal 16.5 kDa protein, chloroplastic", "gene_name": "MPH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49290-1", "protein_name": "Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic", "gene_name": "F22K20.14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P81760-1", "protein_name": "Thylakoid lumenal 17.4 kDa protein, chloroplastic", "gene_name": "TL17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P52410-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic", "gene_name": "KAS1; KASI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WLC6-1", "protein_name": "Pentatricopeptide repeat-containing protein MRL1, chloroplastic", "gene_name": "MRL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WWW9-1", "protein_name": "D-xylose-proton symporter-like 3, chloroplastic", "gene_name": "MNC17.140; MNC17.15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93V85-1", "protein_name": "WAT1-related protein At3g02690, chloroplastic", "gene_name": "F16B3.32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q944H2-1", "protein_name": "Protein ABCI12, chloroplastic", "gene_name": "ABCI12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XFT3-1", "protein_name": "Oxygen-evolving enhancer protein 3-1, chloroplastic", "gene_name": "PSBQ1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XI73-1", "protein_name": "Photosynthetic NDH subunit of lumenal location 2, chloroplastic", "gene_name": "PNSL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23193-1", "protein_name": "CBS domain-containing protein CBSX1, chloroplastic", "gene_name": "CBSX1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S9J1-1", "protein_name": "Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial", "gene_name": "HEMG2; PPOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7S8-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 3, chloroplastic", "gene_name": "EMB1138; RH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GTR4-1", "protein_name": "Pullulanase 1, chloroplastic", "gene_name": "PU1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GW78-1", "protein_name": "ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic", "gene_name": "CLPT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWE0-1", "protein_name": "Pentatricopeptide repeat-containing protein At4g16390, chloroplastic", "gene_name": "P67", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H103-1", "protein_name": "Glucose-6-phosphate isomerase 1, chloroplastic", "gene_name": "PGI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LE52-1", "protein_name": "Glutathione S-transferase DHAR3, chloroplastic", "gene_name": "DHAR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W585-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 8, chloroplastic", "gene_name": "FTSH8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Z53-1", "protein_name": "Plastidial pyruvate kinase 3, chloroplastic", "gene_name": "PKP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65272-1", "protein_name": "K(+) efflux antiporter 2, chloroplastic", "gene_name": "KEA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23403-1", "protein_name": "PsbP domain-containing protein 1, chloroplastic", "gene_name": "PPD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23647-1", "protein_name": "1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic", "gene_name": "SBE2.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48528-1", "protein_name": "Outer envelope pore protein 16-3, chloroplastic/mitochondrial", "gene_name": "OEP163", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64903-1", "protein_name": "Nucleoside diphosphate kinase II, chloroplastic", "gene_name": "NDPK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65258-1", "protein_name": "Beta-amylase 2, chloroplastic", "gene_name": "BAM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O78310-1", "protein_name": "Superoxide dismutase [Cu-Zn] 2, chloroplastic", "gene_name": "CSD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXJ0-1", "protein_name": "Cell division protein FtsZ homolog 2-2, chloroplastic", "gene_name": "FTSZ2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82533-1", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "gene_name": "FTSZ2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82392-1", "protein_name": "Phosphomethylpyrimidine synthase, chloroplastic", "gene_name": "THIC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82660-1", "protein_name": "Photosystem II stability/assembly factor HCF136, chloroplastic", "gene_name": "HCF136", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P31166-1", "protein_name": "Adenine phosphoribosyltransferase 1, chloroplastic", "gene_name": "APT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940U6-1", "protein_name": "Protein FLUORESCENT IN BLUE LIGHT, chloroplastic", "gene_name": "FLU", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P23321-1", "protein_name": "Oxygen-evolving enhancer protein 1-1, chloroplastic", "gene_name": "PSBO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42699-1", "protein_name": "Plastocyanin major isoform, chloroplastic", "gene_name": "DRT112", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZP9-1", "protein_name": "Calvin cycle protein CP12-2, chloroplastic", "gene_name": "CP12-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZTZ7-1", "protein_name": "K(+) efflux antiporter 1, chloroplastic", "gene_name": "KEA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04983-1", "protein_name": "Biotin carboxylase, chloroplastic", "gene_name": "CAC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AR8-1", "protein_name": "3-isopropylmalate dehydratase large subunit, chloroplastic", "gene_name": "IIL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9AT00-1", "protein_name": "Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic", "gene_name": "TGD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9P4-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic", "gene_name": "KAS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FEA2-1", "protein_name": "Glutamate--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FH02-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 5, chloroplastic", "gene_name": "FTSH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLW9-1", "protein_name": "Plastidial pyruvate kinase 2", "gene_name": "PKP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LI74-1", "protein_name": "Protein CHUP1, chloroplastic", "gene_name": "CHUP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LR64-1", "protein_name": "Photosystem II repair protein PSB27-H1, chloroplastic", "gene_name": "PSB27-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LD43-1", "protein_name": "Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic", "gene_name": "CAC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIB2-1", "protein_name": "Alpha-glucan phosphorylase 1", "gene_name": "PHS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIK0-1", "protein_name": "Plastidial pyruvate kinase 1, chloroplastic", "gene_name": "PKP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1Q1-1", "protein_name": "Thylakoid lumenal protein TL20.3, chloroplastic", "gene_name": "TL20.3; TL203", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZQC5-1", "protein_name": "Interactor of constitutive active ROPs 2, chloroplastic", "gene_name": "ICR2; RIP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDY5-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic", "gene_name": "FKBP17-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WRJ7-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic", "gene_name": "FKBP20-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P56765-1", "protein_name": "Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic", "gene_name": "accD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P82538-1", "protein_name": "PsbP-like protein 1, chloroplastic", "gene_name": "PPL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q058N4-1", "protein_name": "Magnesium transporter MRS2-11, chloroplastic", "gene_name": "MRS2-11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38814-1", "protein_name": "Thiamine thiazole synthase, chloroplastic", "gene_name": "THI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39102-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 1, chloroplastic", "gene_name": "FTSH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42533-1", "protein_name": "Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic", "gene_name": "BCCP1; CAC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42029-1", "protein_name": "Oxygen-evolving enhancer protein 2-1, chloroplastic", "gene_name": "PSBP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42529-1", "protein_name": "Tryptophan synthase alpha chain, chloroplastic", "gene_name": "TSA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42545-1", "protein_name": "Cell division protein FtsZ homolog 1, chloroplastic", "gene_name": "FTSZ1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NPM8-1", "protein_name": "Bifunctional phosphatase IMPL2, chloroplastic", "gene_name": "HISN7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DFG3-1", "protein_name": "DExH-box ATP-dependent RNA helicase DExH15 chloroplastic", "gene_name": "ISE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "D2WL32-1", "protein_name": "1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic", "gene_name": "SBE3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IW47-1", "protein_name": "Transketolase-2, chloroplastic", "gene_name": "TKL-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38418-1", "protein_name": "Lipoxygenase 2, chloroplastic", "gene_name": "LOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80860-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 2, chloroplastic", "gene_name": "FTSH2; VAR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04196-1", "protein_name": "Isoamylase 1, chloroplastic", "gene_name": "ISA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV03-1", "protein_name": "Glutamate synthase 1 [NADH], chloroplastic", "gene_name": "GLT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYA9-1", "protein_name": "Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic", "gene_name": "CSP41A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZ66-1", "protein_name": "Assimilatory sulfite reductase (ferredoxin), chloroplastic", "gene_name": "SIR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZS3-1", "protein_name": "1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic", "gene_name": "SBE2.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SA52-1", "protein_name": "Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic", "gene_name": "CRB; CSP41B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M158-1", "protein_name": "Rhodanese-like domain-containing protein 4, chloroplastic", "gene_name": "STR4; TROL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H9-1", "protein_name": "Protein PAM71-homolog, chloroplastic", "gene_name": "PAM71-HL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0Z3-1", "protein_name": "K(+) efflux antiporter 3, chloroplastic", "gene_name": "KEA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M8M7-1", "protein_name": "Acetylornithine aminotransferase, chloroplastic/mitochondrial", "gene_name": "WIN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S841-1", "protein_name": "Oxygen-evolving enhancer protein 1-2, chloroplastic", "gene_name": "PSBO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGH4-1", "protein_name": "Photosynthetic NDH subunit of lumenal location 3, chloroplastic", "gene_name": "PNSL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSA5-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic", "gene_name": "CYP38", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9STG9-1", "protein_name": "Amidophosphoribosyltransferase 2, chloroplastic", "gene_name": "ASE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZB8", "url": "https://www.uniprot.org/uniprotkb/Q9LZB8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18431481", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 115 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional cloning of an Arabidopsis thaliana cDNA encoding cycloeucalenol cycloisomerase.", "journal": "J. Biol. Chem.", "date": "2000", "authors": "Lovato M A, Hart E A, Segura M J, Giner J L, Matsuda S P", "reference": { "type": "PubMed", "id": "10788449", "url": "https://pubmed.ncbi.nlm.nih.gov/10788449" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M643-1", "protein_name": "Cycloeucalenol cycloisomerase", "gene_name": "CPI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M643", "url": "https://www.uniprot.org/uniprotkb/Q9M643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10788449", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Ecol.", "date": "2008", "authors": "Jorgensen T H, Emerson B C", "reference": { "type": "PubMed", "id": "19140981", "url": "https://pubmed.ncbi.nlm.nih.gov/19140981" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SCS6-1", "protein_name": "RPW8-like protein 4", "gene_name": "HR4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SCS6", "url": "https://www.uniprot.org/uniprotkb/Q9SCS6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19140981", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HR4 gene is induced in the Arabidopsis-trichoderma atroviride beneficial interaction.", "journal": "Int. J. Mol. Sci.", "date": "2012", "authors": "S\u00e1enz-Mata Jorge, Jim\u00e9nez-Bremont Juan Francisco", "reference": { "type": "PubMed", "id": "22942755", "url": "https://pubmed.ncbi.nlm.nih.gov/22942755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SCS6-1", "protein_name": "RPW8-like protein 4", "gene_name": "HR4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SCS6", "url": "https://www.uniprot.org/uniprotkb/Q9SCS6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22942755", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2006", "authors": "Herr Alan J, Moln\u00e0r Attila, Jones Alex, Baulcombe David C", "reference": { "type": "PubMed", "id": "17008405", "url": "https://pubmed.ncbi.nlm.nih.gov/17008405" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZQ9-1", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2", "gene_name": "T12C14_10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38953-1", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "gene_name": "MFE16.8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K2E9-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7", "gene_name": "CUV", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKF9-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF100", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IJV4-1", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6", "gene_name": "MEE29", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JMJ3-1", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH8", "gene_name": "DL4365C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22899-1", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3", "gene_name": "T08I13.9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY00-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1", "gene_name": "ESP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9G6-1", "protein_name": "Cleavage stimulating factor 64", "gene_name": "CSTF64", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZQ9", "url": "https://www.uniprot.org/uniprotkb/Q9LZQ9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17008405", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A heteromeric plastidic pyruvate kinase complex involved in seed oil biosynthesis in Arabidopsis.", "journal": "Plant Cell", "date": "2007", "authors": "Andre Carl, Froehlich John E, Moll Matthew R, Benning Christoph", "reference": { "type": "PubMed", "id": "17557808", "url": "https://pubmed.ncbi.nlm.nih.gov/17557808" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M3B6-1", "protein_name": "Plastidial pyruvate kinase 4, chloroplastic", "gene_name": "PKP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Z53-1", "protein_name": "Plastidial pyruvate kinase 3, chloroplastic", "gene_name": "PKP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLW9-1", "protein_name": "Plastidial pyruvate kinase 2", "gene_name": "PKP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIK0-1", "protein_name": "Plastidial pyruvate kinase 1, chloroplastic", "gene_name": "PKP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M3B6", "url": "https://www.uniprot.org/uniprotkb/Q9M3B6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17557808", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genetic characterization of mutants resistant to the antiauxin p-chlorophenoxyisobutyric acid reveals that AAR3, a gene encoding a DCN1-like protein, regulates responses to the synthetic auxin 2,4-dichlorophenoxyacetic acid in Arabidopsis roots.", "journal": "Plant physiology", "date": "2007-11", "authors": "Biswas Kamal Kanti, Ooura Chiharu, Higuchi Kanako, Miyazaki Yuji, Van Nguyen Vinh, Rahman Abidur, Uchimiya Hirofumi, Kiyosue Tomohiro, Koshiba Tomokazu, Tanaka Atsushi, Narumi Issay, Oono Yutaka", "reference": { "type": "PubMed", "id": "17905859", "url": "https://pubmed.ncbi.nlm.nih.gov/17905859" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9MBG8-1", "protein_name": "Defective in cullin neddylation protein AAR3", "gene_name": "AAR3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9MBG8", "url": "https://www.uniprot.org/uniprotkb/Q9MBG8" } ], "common_name": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Histone hyperacetylation affects meiotic recombination and chromosome segregation in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-06-01", "authors": "Perrella Giorgio, Consiglio M Federica, Aiese-Cigliano Riccardo, Cremona Gaetana, Sanchez-Moran Eugenio, Barra Lucia, Errico Angela, Bressan Ray A, Franklin F Christopher H, Conicella Clara", "reference": { "type": "PubMed", "id": "20230492", "url": "https://pubmed.ncbi.nlm.nih.gov/20230492" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M8T9-1", "protein_name": "Histone acetyltransferase MCC1", "gene_name": "MCC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M8T9", "url": "https://www.uniprot.org/uniprotkb/Q9M8T9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20230492", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2005", "authors": "Duch\u00eane Anne-Marie, Giritch Anatoli, Hoffmann Beate, Cognat Val\u00e9rie, Lancelin Dominique, Peeters Nemo M, Zaepfel Marlyse, Mar\u00e9chal-Drouard Laurence, Small Ian D", "reference": { "type": "PubMed", "id": "16251277", "url": "https://pubmed.ncbi.nlm.nih.gov/16251277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1R2-1", "protein_name": "Proline--tRNA ligase, cytoplasmic", "gene_name": "PRORS-CYT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SW95-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic 2", "gene_name": "NS2; SYNC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGE9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit, cytoplasmic", "gene_name": "F28P22.26; F28P22_26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T034-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit, cytoplasmic", "gene_name": "T22F8.180; 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"protein_name": "Asparagine--tRNA ligase, cytoplasmic 3", "gene_name": "SYNC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVN5-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "F18A5.170", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXE9-1", "protein_name": "Tryptophan--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4F3-1", "protein_name": "Glutamine--tRNA ligase, cytoplasmic", "gene_name": "OVA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94K73-1", "protein_name": "Phenylalanine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "F9D24.50", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SW96-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic 1", "gene_name": "SYNC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XEA0-1", "protein_name": "Leucine--tRNA ligase, 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"Q9M876-1", "protein_name": "Tyrosine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "EMB2768", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1R2", "url": "https://www.uniprot.org/uniprotkb/Q9M1R2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16251277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYL3-1", "protein_name": "Cysteine--tRNA ligase 1, cytoplasmic", "gene_name": "F18O21_260", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23247-1", "protein_name": "Arginine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "EMB1027", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IFC5-1", "protein_name": "Threonine--tRNA ligase, chloroplastic/mitochondrial 2", "gene_name": "EMB2761", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KE63-1", "protein_name": "Valine--tRNA ligase, chloroplastic/mitochondrial 2", "gene_name": "EMB2247", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82462-1", "protein_name": "Glutamate--tRNA ligase, cytoplasmic", "gene_name": "F21E10.12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SR15-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "F7O18.7; F7O18_7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFC7-1", "protein_name": "Alanine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "EMB1030; EMB86", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSK1-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic 3", "gene_name": "SYNC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVN5-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "F18A5.170", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXE9-1", "protein_name": "Tryptophan--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4F3-1", "protein_name": "Glutamine--tRNA ligase, cytoplasmic", "gene_name": "OVA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SW96-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic 1", "gene_name": "SYNC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XEA0-1", "protein_name": "Leucine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "EMB2369", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H104-1", "protein_name": "Aspartate--tRNA ligase 1, cytoplasmic", "gene_name": "F10M23.210", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S9J2-1", "protein_name": "Tyrosine--tRNA ligase 1, cytoplasmic", "gene_name": "T1B8.14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLM5-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "F24G24.120; T9A4.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZPI1-1", "protein_name": "Lysine--tRNA ligase, cytoplasmic", "gene_name": "T19F11.11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IYF8-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "F13E7.30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWT8-1", "protein_name": "Serine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA7; SRS", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXK8-1", "protein_name": "Isoleucine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48593-1", "protein_name": "Asparagine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "NS1; SYNO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FEA2-1", "protein_name": "Glutamate--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FYR6-1", "protein_name": "Proline--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJE2-1", "protein_name": "Lysine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "OVA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C713-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "F28G11.14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M084-1", "protein_name": "Aspartate--tRNA ligase 2, cytoplasmic", "gene_name": "IBI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M876-1", "protein_name": "Tyrosine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "EMB2768", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1R2", "url": "https://www.uniprot.org/uniprotkb/Q9M1R2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16297076", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome.", "journal": "Mol. Cell. Proteomics", "date": "2004", "authors": "Marmagne Anne, Rouet Marie-Aude, Ferro Myriam, Rolland Norbert, Alcon Carine, Joyard Jacques, Garin J\u00e9rome, Barbier-Brygoo H\u00e9l\u00e8ne, Ephritikhine Genevi\u00e8ve", "reference": { "type": "PubMed", "id": "15060130", "url": "https://pubmed.ncbi.nlm.nih.gov/15060130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1E7-1", "protein_name": "Tetraspanin-3", "gene_name": "TET3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2D8-1", "protein_name": "Uncharacterized protein At3g61260", "gene_name": "T20K12.160", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P23586-1", "protein_name": "Sugar transport protein 1", "gene_name": "STP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q06611-1", "protein_name": "Aquaporin PIP1-2", "gene_name": "PIP1-2; PIP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39222-1", "protein_name": "Ras-related protein RABA1b", "gene_name": "RABA1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39228-1", "protein_name": "Sugar transport protein 4", "gene_name": "STP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYB4-1", "protein_name": "Probable glutathione peroxidase 5", "gene_name": "GPX5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M5P2-1", "protein_name": "Secretory carrier-associated membrane protein 3", "gene_name": "SC3; SCAMP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04331-1", "protein_name": "Prohibitin-3, mitochondrial", "gene_name": "PHB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24466-1", "protein_name": "Ras-related protein RABE1a", "gene_name": "RABE1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82628-1", "protein_name": "V-type proton ATPase subunit G1", "gene_name": "VHA-G1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96262-1", "protein_name": "Plasma membrane-associated cation-binding protein 1", "gene_name": "PCAP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRH6-1", "protein_name": "Hypersensitive-induced response protein 3", "gene_name": "HIR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRS5-1", "protein_name": "Ras-related protein RABA5b", "gene_name": "RABA5B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8M0-1", "protein_name": "Cysteine-rich and transmembrane domain-containing protein WIH2", "gene_name": "WIH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKM2-1", "protein_name": "Mitochondrial outer membrane protein porin 4", "gene_name": "VDAC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK88-1", "protein_name": "NADPH:quinone oxidoreductase", "gene_name": "NQR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SF29-1", "protein_name": "Syntaxin-71", "gene_name": "SYP71", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZSD4-1", "protein_name": "Syntaxin-121", "gene_name": "SYP121", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04249-1", "protein_name": "Sugar transport protein 7", "gene_name": "STP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23207-1", "protein_name": "Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2", "gene_name": "C7A10.610", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49621-1", "protein_name": "MLO-like protein 1", "gene_name": "MLO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6DBN4-1", "protein_name": "Reticulon-like protein B6", "gene_name": "RTNLB6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NQE2-1", "protein_name": "Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1", "gene_name": "M4I22.80; M4I22_80", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P21276-1", "protein_name": "Superoxide dismutase [Fe] 1, chloroplastic", "gene_name": "FSD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P28186-1", "protein_name": "Ras-related protein RABE1c", "gene_name": "RABE1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43286-1", "protein_name": "Aquaporin PIP2-1", "gene_name": "PIP2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LAA6-1", "protein_name": "Probable aquaporin PIP1-5", "gene_name": "PIP1-5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L8Z1-1", "protein_name": "CASP-like protein 1E1", "gene_name": "Dl3855w; FCAALL.230", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96303-1", "protein_name": "Inorganic phosphate transporter 1-4", "gene_name": "PHT1-4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAR7-1", "protein_name": "Hypersensitive-induced response protein 2", "gene_name": "HIR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FM19-1", "protein_name": "Hypersensitive-induced response protein 1", "gene_name": "HIR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSQ5-1", "protein_name": "NAD(P)H dehydrogenase (quinone) FQR1", "gene_name": "FQR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6X2-1", "protein_name": "Secretory carrier-associated membrane protein 4", "gene_name": "SCAMP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGK5-1", "protein_name": "Ras-related protein RABA5a", "gene_name": "RABA5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIX1-1", "protein_name": "AIG2-like protein B", "gene_name": "AIG2LB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93004-1", "protein_name": "Aquaporin PIP2-7", "gene_name": "PIP2-7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42342-1", "protein_name": "Cytochrome b5 isoform E", "gene_name": "CYTB5-E", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEH3-1", "protein_name": "Ras-related protein RABD2c", "gene_name": "RABD2C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMX3-1", "protein_name": "Mitochondrial outer membrane protein porin 3", "gene_name": "VDAC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SU40-1", "protein_name": "Monocopper oxidase-like protein SKU5", "gene_name": "SKU5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SUR3-1", "protein_name": "Reticulon-like protein B1", "gene_name": "RTNLB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1E7", "url": "https://www.uniprot.org/uniprotkb/Q9M1E7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15060130", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Components of nucleotide excision repair and DNA damage tolerance in Arabidopsis thaliana.", "journal": "Environ. Mol. Mutagen.", "date": "2005", "authors": "Kunz Bernard A, Anderson Heather J, Osmond Megan J, Vonarx Edward J", "reference": { "type": "PubMed", "id": "15645454", "url": "https://pubmed.ncbi.nlm.nih.gov/15645454" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M322-1", "protein_name": "General transcription and DNA repair factor IIH subunit TFB1-3", "gene_name": "TFB1-3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZV43-1", "protein_name": "Protein CHROMATIN REMODELING 8", "gene_name": "CHR8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NNM0-1", "protein_name": "General transcription and DNA repair factor IIH subunit TFB5", "gene_name": "TFB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZVN9-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LF41-1", "protein_name": "General transcription and DNA repair factor IIH subunit TFB4", "gene_name": "TFB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3ECP0-1", "protein_name": "General transcription and DNA repair factor IIH subunit TFB1-1", "gene_name": "TFB1-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q680U9-1", "protein_name": "General transcription and DNA repair factor IIH subunit TFB2", "gene_name": "DL4540C; TFB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H2D5-1", "protein_name": "DNA polymerase eta", "gene_name": "POLH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4M7-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "XPD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FUG4-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB2", "gene_name": "XPB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38861-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB1", "gene_name": "XPB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6JDV7-1", "protein_name": "DNA polymerase kappa", "gene_name": "POLK", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M322", "url": "https://www.uniprot.org/uniprotkb/Q9M322" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15645454", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Four mismatch repair paralogues coexist in Arabidopsis thaliana: AtMSH2, AtMSH3, AtMSH6-1 and AtMSH6-2.", "journal": "Mol. Gen. Genet.", "date": "1999", "authors": "Ad\u00e9 J, Belzile F, Philippe H, Doutriaux M P", "reference": { "type": "PubMed", "id": "10517319", "url": "https://pubmed.ncbi.nlm.nih.gov/10517319" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SMV7-1", "protein_name": "DNA mismatch repair protein MSH7", "gene_name": "MSH7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04716-1", "protein_name": "DNA mismatch repair protein MSH6", "gene_name": "MSH6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65607-1", "protein_name": "DNA mismatch repair protein MSH3", "gene_name": "MSH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24617-1", "protein_name": "DNA mismatch repair protein MSH2", "gene_name": "MSH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SMV7", "url": "https://www.uniprot.org/uniprotkb/Q9SMV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10517319", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA.", "journal": "The Plant cell", "date": "2000-06", "authors": "Culligan K M, Hays J B", "reference": { "type": "PubMed", "id": "10852942", "url": "https://pubmed.ncbi.nlm.nih.gov/10852942" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SMV7-1", "protein_name": "DNA mismatch repair protein MSH7", "gene_name": "MSH7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04716-1", "protein_name": "DNA mismatch repair protein MSH6", "gene_name": "MSH6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65607-1", "protein_name": "DNA mismatch repair protein MSH3", "gene_name": "MSH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24617-1", "protein_name": "DNA mismatch repair protein MSH2", "gene_name": "MSH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SMV7", "url": "https://www.uniprot.org/uniprotkb/Q9SMV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10852942", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dissimilar mispair-recognition spectra of Arabidopsis DNA-mismatch-repair proteins MSH2*MSH6 (MutSalpha) and MSH2*MSH7 (MutSgamma).", "journal": "Nucleic acids research", "date": "2003-10-15", "authors": "Wu Shiau-Yin, Culligan Kevin, Lamers Meindert, Hays John", "reference": { "type": "PubMed", "id": "14530450", "url": "https://pubmed.ncbi.nlm.nih.gov/14530450" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SMV7-1", "protein_name": "DNA mismatch repair protein MSH7", "gene_name": "MSH7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04716-1", "protein_name": "DNA mismatch repair protein MSH6", "gene_name": "MSH6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24617-1", "protein_name": "DNA mismatch repair protein MSH2", "gene_name": "MSH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SMV7", "url": "https://www.uniprot.org/uniprotkb/Q9SMV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14530450", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA mismatch repair in plants. An Arabidopsis thaliana gene that predicts a protein belonging to the MSH2 subfamily of eukaryotic MutS homologs.", "journal": "Plant Physiol.", "date": "1997", "authors": "Culligan K M, Hays J B", "reference": { "type": "PubMed", "id": "9342879", "url": "https://pubmed.ncbi.nlm.nih.gov/9342879" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SMV7-1", "protein_name": "DNA mismatch repair protein MSH7", "gene_name": "MSH7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24617-1", "protein_name": "DNA mismatch repair protein MSH2", "gene_name": "MSH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SMV7", "url": "https://www.uniprot.org/uniprotkb/Q9SMV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9342879", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alanine aminotransferase homologs catalyze the glutamate:glyoxylate aminotransferase reaction in peroxisomes of Arabidopsis.", "journal": "Plant Physiol.", "date": "2003", "authors": "Liepman Aaron H, Olsen Laura J", "reference": { "type": "PubMed", "id": "12529529", "url": "https://pubmed.ncbi.nlm.nih.gov/12529529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SR86-1", "protein_name": "Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial", "gene_name": "PYD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940M2-1", "protein_name": "Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial", "gene_name": "AGT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AL9-1", "protein_name": "Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial", "gene_name": "AGT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LR30-1", "protein_name": "Glutamate--glyoxylate aminotransferase 1", "gene_name": "GGAT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7E9-1", "protein_name": "Glutamate--glyoxylate aminotransferase 2", "gene_name": "GGAT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SR86", "url": "https://www.uniprot.org/uniprotkb/Q9SR86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12529529", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Duplication and quadruplication of Arabidopsis thaliana cysteinyl- and asparaginyl-tRNA synthetase genes of organellar origin.", "journal": "J. Mol. Evol.", "date": "2000", "authors": "Peeters N M, Chapron A, Giritch A, Grandjean O, Lancelin D, Lhomme T, Vivrel A, Small I", "reference": { "type": "PubMed", "id": "10824085", "url": "https://pubmed.ncbi.nlm.nih.gov/10824085" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SW95-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic 2", "gene_name": "NS2; SYNC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SW96-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic 1", "gene_name": "SYNC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48593-1", "protein_name": "Asparagine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "NS1; SYNO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IPY2-1", "protein_name": "Cysteine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "SYCO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SW95", "url": "https://www.uniprot.org/uniprotkb/Q9SW95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10824085", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and expression of an asparaginyl-tRNA synthetase gene located on chromosome IV of Arabidopsis thaliana and adjacent to a novel large gene of 15 exons.", "journal": "Biochim. Biophys. Acta", "date": "1998", "authors": "Aubourg S, Ch\u00e9ron A, Kreis M, Lecharny A", "reference": { "type": "PubMed", "id": "9655910", "url": "https://pubmed.ncbi.nlm.nih.gov/9655910" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SW95-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic 2", "gene_name": "NS2; SYNC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JP43-1", "protein_name": "Protein SWOLLEN 1", "gene_name": "G2484-1; SWO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48593-1", "protein_name": "Asparagine--tRNA ligase, chloroplastic/mitochondrial", "gene_name": "NS1; SYNO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SW95", "url": "https://www.uniprot.org/uniprotkb/Q9SW95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metallochaperone-like genes in Arabidopsis thaliana.", "journal": "Metallomics", "date": "2010", "authors": "Tehseen Muhammad, Cairns Narelle, Sherson Sarah, Cobbett Christopher S", "reference": { "type": "PubMed", "id": "21072340", "url": "https://pubmed.ncbi.nlm.nih.gov/21072340" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SSF0-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 16", "gene_name": "HIPP16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M8K5-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 32", "gene_name": "HIPP32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IQG4-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 30", "gene_name": "HIPP30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A2RVM8-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 37", "gene_name": "HIPP37", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LP41-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 29", "gene_name": "HIPP29", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTE3-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 12", "gene_name": "HIPP12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTE1-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 14", "gene_name": "HIPP14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTE2-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 13", "gene_name": "HIPP13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVS0-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 17", "gene_name": "HIPP17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTE4-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 11", "gene_name": "HIPP11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SFF7-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 43", "gene_name": "HIPP43", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M8T7-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 8", "gene_name": "HIPP08", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHQ8-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 4", "gene_name": "HIPP04", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJH5-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 3", "gene_name": "HIPP03; HIPP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0K9-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 18", "gene_name": "HIPP18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUV1-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 1", "gene_name": "HIPP01", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B3H6D0-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 45", "gene_name": "HIPP45", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0JPW5-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 19", "gene_name": "HIPP19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84K70-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 31", "gene_name": "HIPP31", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VP2-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 22", "gene_name": "HIPP22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5D3-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 7", "gene_name": "HIPP07", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9A3-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 20", "gene_name": "HIPP20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LF57-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 21", "gene_name": "HIPP21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJL2-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 5", "gene_name": "HIPP05", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O03982-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 39", "gene_name": "HIPP39", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JZL7-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 33", "gene_name": "HIPP33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49613-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 25", "gene_name": "HIPP25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65657-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 23", "gene_name": "HIPP23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81464-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 24", "gene_name": "HIPP24", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5PNZ7-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 46", "gene_name": "HIPP46", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q67ZW1-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 27", "gene_name": "HIPP27", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WV37-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 34", "gene_name": "HIPP34", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWS3-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 2", "gene_name": "HIPP02", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAK6-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 15", "gene_name": "HIPP15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAV5-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 42", "gene_name": "HIPP42", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IC29-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 28", "gene_name": "HIPP28", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I1X0-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 41", "gene_name": "HIPP41", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JDJ0-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 47", "gene_name": "HIPP47", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JMB8-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 44", "gene_name": "HIPP44", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KHL6-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 10", "gene_name": "HIPP10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84J88-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 36", "gene_name": "HIPP36", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZN7-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "gene_name": "HIPP26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C7J6-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 35", "gene_name": "HIPP35", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLU5-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 9", "gene_name": "HIPP09", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZF1-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 6", "gene_name": "HIPP06", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SSF0", "url": "https://www.uniprot.org/uniprotkb/Q9SSF0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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{ "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Heavy metal-associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants.", "journal": "FEBS J.", "date": "2013", "authors": "de Abreu-Neto Jo\u00e3o Braga, Turchetto-Zolet Andreia C, de 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Biotechnol.", "date": "1996", "authors": "Crowell D N, Biermann B J, Randall S K", "reference": { "type": "PubMed", "id": "8837031", "url": "https://pubmed.ncbi.nlm.nih.gov/8837031" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SSF0-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 16", "gene_name": "HIPP16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VP2-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 22", "gene_name": "HIPP22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5D3-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 7", "gene_name": "HIPP07", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJL2-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 5", "gene_name": "HIPP05", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5PNZ7-1", "protein_name": "Heavy metal-associated isoprenylated plant 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isoform", "gene_name": "B'KAPPA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVE2-1", "protein_name": "Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform", "gene_name": "B'ZETA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SV41", "url": "https://www.uniprot.org/uniprotkb/Q9SV41" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26517938", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] 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{ "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"uniprot_canonical_ac": "F4J0W4-1", "protein_name": "Mitochondrial Rho GTPase 2", "gene_name": "MIRO2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9MA88", "url": "https://www.uniprot.org/uniprotkb/Q9MA88" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18344283", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis thaliana MIRO1 and MIRO2 GTPases are unequally redundant in pollen tube growth and fusion of polar nuclei during female gametogenesis.", "journal": "PLoS ONE", "date": "2011", "authors": "S\u00f8rmo Christopher G, Brembu Tore, Winge Per, Bones Atle M", "reference": { "type": "PubMed", "id": "21494602", "url": "https://pubmed.ncbi.nlm.nih.gov/21494602" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9MA88-1", "protein_name": "Mitochondrial Rho GTPase 3", "gene_name": "MIRO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXF8-1", "protein_name": "Mitochondrial Rho GTPase 1", "gene_name": "MIRO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J0W4-1", "protein_name": "Mitochondrial Rho 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression and interaction analysis of Arabidopsis Skp1-related genes.", "journal": "Plant Cell Physiol.", "date": "2004", "authors": "Takahashi Naoki, Kuroda Hirofumi, Kuromori Takashi, Hirayama Takashi, Seki Motoaki, Shinozaki Kazuo, Shimada Hiroaki, Matsui Minami", "reference": { "type": "PubMed", "id": "14749489", "url": "https://pubmed.ncbi.nlm.nih.gov/14749489" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M310-1", "protein_name": "F-box/kelch-repeat protein At3g61590", "gene_name": "HWS", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSX9-1", "protein_name": "SKP1-like protein 9", "gene_name": "ASK9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04197-1", "protein_name": "Coronatine-insensitive protein 1", "gene_name": "COI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKK0-1", "protein_name": "EIN3-binding F-box protein 1", "gene_name": "EBF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65674-1", "protein_name": "SKP1-like protein 12", "gene_name": "ASK12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81055-1", "protein_name": "SKP1-like protein 16", "gene_name": "ASK16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVA3-1", "protein_name": "F-box/kelch-repeat protein At4g39550", "gene_name": "F23K16.180", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1X5-1", "protein_name": "SKP1-like protein 13", "gene_name": "ASK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL93-1", "protein_name": "SKP1-like protein 3", "gene_name": "ASK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SY65-1", "protein_name": "SKP1-like protein 18", "gene_name": "ASK18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGY4-1", "protein_name": "F-box protein At5g49610", "gene_name": "K6M13.17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81057-1", "protein_name": "SKP1-like protein 14", "gene_name": "ASK14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49484-1", "protein_name": "SKP1-like protein 11", "gene_name": "ASK11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9W9-1", "protein_name": "Adagio protein 3", "gene_name": "ADO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZVQ6-1", "protein_name": "F-box protein PP2-B10", "gene_name": "PP2B10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M310", "url": "https://www.uniprot.org/uniprotkb/Q9M310" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14749489", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking.", "journal": "Plant Cell", "date": "2009", "authors": "Simpson Clare, Thomas Carole, Findlay Kim, Bayer Emmanuelle, Maule Andrew J", "reference": { "type": "PubMed", "id": "19223515", "url": "https://pubmed.ncbi.nlm.nih.gov/19223515" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M2K6-1", "protein_name": "PLASMODESMATA CALLOSE-BINDING PROTEIN 5", "gene_name": "PDCB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SD84-1", "protein_name": "PLASMODESMATA CALLOSE-BINDING PROTEIN 2", "gene_name": "E13L3; PDCB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93V72-1", "protein_name": "PLASMODESMATA CALLOSE-BINDING PROTEIN 4", "gene_name": "PDCB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNQ2-1", "protein_name": "PLASMODESMATA CALLOSE-BINDING PROTEIN 1", "gene_name": "PDCB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZ86-1", "protein_name": "PLASMODESMATA CALLOSE-BINDING PROTEIN 3", "gene_name": "PDCB3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M2K6", "url": "https://www.uniprot.org/uniprotkb/Q9M2K6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19223515", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.", "journal": "Plant Cell", "date": "2004", "authors": "Heazlewood Joshua L, Tonti-Filippini Julian S, Gout Alexander M, Day David A, Whelan James, Millar A Harvey", "reference": { "type": "PubMed", "id": "14671022", "url": "https://pubmed.ncbi.nlm.nih.gov/14671022" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1D3-1", "protein_name": "Citrate synthase 5, mitochondrial", "gene_name": "CSY5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9M9-1", "protein_name": "Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "gene_name": "T17B22.21; T17B22_21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M065-1", "protein_name": "Small ribosomal subunit protein mL103 (rPPR7)", "gene_name": "AP22.65; C7A10.680", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIL6-1", "protein_name": "Prohibitin-6, mitochondrial", "gene_name": "PHB6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P52901-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial", "gene_name": "E1 ALPHA; E1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38799-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial", "gene_name": "PDH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WQF7-1", "protein_name": "Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial", "gene_name": "LTA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38946-1", "protein_name": "Glutamate dehydrogenase 2", "gene_name": "GDH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P68209-1", "protein_name": "Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial", "gene_name": "F8L15_30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P83483-1", "protein_name": "ATP synthase subunit beta-1, mitochondrial", "gene_name": "T2K12.11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92549-1", "protein_name": "ATP synthase subunit alpha, mitochondrial", "gene_name": "ATPA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92558-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 1", "gene_name": "ND1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93285-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "COX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93303-1", "protein_name": "ATP synthase protein YMF19", "gene_name": "YMF19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93306-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2", "gene_name": "NAD7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42577-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "T22P22_160", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42599-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial", "gene_name": "YUP8H12R.37; YUP8H12R_21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56XE8-1", "protein_name": "Hexokinase-4", "gene_name": "MAL21.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5M729-1", "protein_name": "Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial", "gene_name": "F20D21.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZD1-1", "protein_name": "Pentatricopeptide repeat-containing protein At1g26460, mitochondrial", "gene_name": "T1K7.17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LG23-1", "protein_name": "Small ribosomal subunit protein mS78 (rPPR3a)", "gene_name": "F14J16.14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY99-1", "protein_name": "Prohibitin-5, mitochondrial", "gene_name": "PHB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04308-1", "protein_name": "Probable mitochondrial-processing peptidase subunit alpha-2, chloroplastic/mitochondrial", "gene_name": "MPPalpha2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04331-1", "protein_name": "Prohibitin-3, mitochondrial", "gene_name": "PHB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39219-1", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "gene_name": "AOX1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23138-1", "protein_name": "Cytochrome c-1", "gene_name": "CYTC-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22048-1", "protein_name": "Ubiquinol oxidase 1c, mitochondrial", "gene_name": "AOX1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22769-1", "protein_name": "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial", "gene_name": "T10P11.14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23913-1", "protein_name": "Ubiquinol oxidase 1b, mitochondrial", "gene_name": "AOX1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81796-1", "protein_name": "Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial", "gene_name": "IDH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82662-1", "protein_name": "Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial", "gene_name": "F11A3.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAB4-1", "protein_name": "Pentatricopeptide repeat-containing protein At1g11630, mitochondrial", "gene_name": "F25C20.22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B78-1", "protein_name": "Glycine dehydrogenase (decarboxylating) 1, mitochondrial", "gene_name": "GLDP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BV7-1", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial", "gene_name": "NDB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SX77-1", "protein_name": "Succinate dehydrogenase subunit 5, mitochondrial", "gene_name": "SDH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XH48-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM13", "gene_name": "TIM13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUX4-1", "protein_name": "Uncharacterized protein At2g27730, mitochondrial", "gene_name": "F15K20.17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1Y0-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial", "gene_name": "IAR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940M2-1", "protein_name": "Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial", "gene_name": "AGT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY13-1", "protein_name": "Ferric reduction oxidase 8, mitochondrial", "gene_name": "FRO8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LAD2-1", "protein_name": "Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial", "gene_name": "MKD15.11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7B5-1", "protein_name": "Chaperonin CPN60-like 1, mitochondrial", "gene_name": "HSP60-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LAH8-1", "protein_name": "Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial", "gene_name": "NDK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LFC0-1", "protein_name": "Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial", "gene_name": "IDH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LG77-1", "protein_name": "Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial", "gene_name": "IDH6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPJ5-1", "protein_name": "Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial", "gene_name": "T15N1.80", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZI8-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 10, mitochondrial", "gene_name": "FTSH10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93XM7-1", "protein_name": "Mitochondrial carnitine/acylcarnitine carrier-like protein", "gene_name": "BOU", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96250-1", "protein_name": "ATP synthase subunit gamma, mitochondrial", "gene_name": "ATPC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96252-1", "protein_name": "ATP synthase subunit delta', mitochondrial", "gene_name": "MQD22.17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6I6-1", "protein_name": "Electron transfer flavoprotein subunit alpha, mitochondrial", "gene_name": "ETFA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLX7-1", "protein_name": "Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial", "gene_name": "MXC20.6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FX83-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial", "gene_name": "F19K19.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK25-1", "protein_name": "Prohibitin-4, mitochondrial", "gene_name": "PHB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQL0-1", "protein_name": "Glycine cleavage system H protein 3, mitochondrial", "gene_name": "GDH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ12-1", "protein_name": "Probable ATP synthase 24 kDa subunit, mitochondrial", "gene_name": "MGP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZT91-1", "protein_name": "Elongation factor Tu, mitochondrial", "gene_name": "TUFA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C641-1", "protein_name": "Elongation factor G-1, mitochondrial", "gene_name": "MEFG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGI2-1", "protein_name": "Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410", "gene_name": "MUL8.9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZM7-1", "protein_name": "Chaperonin CPN60-like 2, mitochondrial", "gene_name": "MCP4.9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q95748-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3", "gene_name": "NAD9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96253-1", "protein_name": "ATP synthase subunit epsilon, mitochondrial", "gene_name": "F19C24.25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRH5-1", "protein_name": "Mitochondrial outer membrane protein porin 1", "gene_name": "VDAC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IW10-1", "protein_name": "Elongation factor G-2, mitochondrial", "gene_name": "MEFG2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49460-1", "protein_name": "Prohibitin-1, mitochondrial", "gene_name": "PHB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84JL2-1", "protein_name": "2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial", "gene_name": "T5E8.100; T5E8_100", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q04613-1", "protein_name": "ATP synthase protein MI25", "gene_name": "ATP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VYR5-1", "protein_name": "Pentatricopeptide repeat-containing protein At4g35850, mitochondrial", "gene_name": "F4B14_120", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W487-1", "protein_name": "Uncharacterized protein At2g39795, mitochondrial", "gene_name": "T5I7.20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZP06-1", "protein_name": "Malate dehydrogenase 1, mitochondrial", "gene_name": "F12M16.14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZPX5-1", "protein_name": "Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial", "gene_name": "SDH1-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22912-1", "protein_name": "Probable cytochrome c oxidase subunit 5C-1", "gene_name": "T8I13.22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93032-1", "protein_name": "Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial", "gene_name": "IDH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB02-1", "protein_name": "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial", "gene_name": "SDH2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LCU7-1", "protein_name": "Enoyl-[acyl-carrier-protein] reductase, mitochondrial", "gene_name": "F16L2.2; T6D9.100", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H107-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial", "gene_name": "F10M23.250", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7K9-1", "protein_name": "NAD-dependent malic enzyme 2, mitochondrial", "gene_name": "NAD-ME2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBZ7-1", "protein_name": "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial", "gene_name": "SDH2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWN9-1", "protein_name": "Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial", "gene_name": "MDC16.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q945K7-1", "protein_name": "Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial", "gene_name": "IDH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94A28-1", "protein_name": "Aconitate hydratase 2, mitochondrial", "gene_name": "ACO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81235-1", "protein_name": "Superoxide dismutase [Mn] 1, mitochondrial", "gene_name": "MSD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48528-1", "protein_name": "Outer envelope pore protein 16-3, chloroplastic/mitochondrial", "gene_name": "OEP163", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49203-1", "protein_name": "Nucleoside diphosphate kinase III, chloroplastic/mitochondrial", "gene_name": "NDPK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49447-1", "protein_name": "ADP/ATP translocase 3, mitochondrial", "gene_name": "AAC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49543-1", "protein_name": "Cysteine desulfurase, mitochondrial", "gene_name": "NIFS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80988-1", "protein_name": "Glycine dehydrogenase (decarboxylating) 2, mitochondrial", "gene_name": "GLDP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LHE5-1", "protein_name": "Mitochondrial import receptor subunit TOM40-1", "gene_name": "TOM40-1; TOM40", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82663-1", "protein_name": "Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial", "gene_name": "SDH1-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P20115-1", "protein_name": "Citrate synthase 4, mitochondrial", "gene_name": "CSY4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P29197-1", "protein_name": "Chaperonin CPN60, mitochondrial", "gene_name": "CPN60", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P31167-1", "protein_name": "ADP/ATP translocase 1, mitochondrial", "gene_name": "AAC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P32746-1", "protein_name": "Dihydroorotate dehydrogenase (quinone), mitochondrial", "gene_name": "PYRD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P40941-1", "protein_name": "ADP/ATP translocase 2, mitochondrial", "gene_name": "AAC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94C74-1", "protein_name": "Serine hydroxymethyltransferase 2, mitochondrial", "gene_name": "SHM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMV1-1", "protein_name": "Gamma carbonic anhydrase-like 1, mitochondrial", "gene_name": "GAMMACAL1; GAMMA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AU7-1", "protein_name": "Gamma carbonic anhydrase 3, mitochondrial", "gene_name": "GAMMACA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96251-1", "protein_name": "ATP synthase subunit O, mitochondrial", "gene_name": "T22N19.100", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6B3-1", "protein_name": "Gamma carbonic anhydrase 2, mitochondrial", "gene_name": "GAMMACA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGI6-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial", "gene_name": "EMB1467", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGM0-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial", "gene_name": "FTSH11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLQ4-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial", "gene_name": "MCO15.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMU6-1", "protein_name": "Mitochondrial phosphate carrier protein 3, mitochondrial", "gene_name": "MPT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPS1-1", "protein_name": "Hexokinase-3", "gene_name": "HKL1; HXK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSW8-1", "protein_name": "Electron transfer flavoprotein subunit beta, mitochondrial", "gene_name": "ETFBETA; ETFB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKA3-1", "protein_name": "Malate dehydrogenase 2, mitochondrial", "gene_name": "MMDH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FT52-1", "protein_name": "ATP synthase subunit d, mitochondrial", "gene_name": "ATPQ", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKA5-1", "protein_name": "Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial", "gene_name": "MORF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZNT7-1", "protein_name": "Prohibitin-2, mitochondrial", "gene_name": "PHB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84WU8-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 3, mitochondrial", "gene_name": "FTSH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFH5-1", "protein_name": "Prohibitin-7, mitochondrial", "gene_name": "PHB7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LEV3-1", "protein_name": "CBS domain-containing protein CBSX3, mitochondrial", "gene_name": "CBSX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK57-1", "protein_name": "Small ribosomal subunit protein mS79 (rPPR3b)", "gene_name": "MJG19.11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P82873-1", "protein_name": "Mitochondrial import receptor subunit TOM20-2", "gene_name": "TOM20-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93655-1", "protein_name": "Lon protease homolog 1, mitochondrial", "gene_name": "LON1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93834-1", "protein_name": "Hexokinase-2", "gene_name": "HXK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46643-1", "protein_name": "Aspartate aminotransferase, mitochondrial", "gene_name": "ASP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P83484-1", "protein_name": "ATP synthase subunit beta-2, mitochondrial", "gene_name": "T2K12.9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93033-1", "protein_name": "Fumarate hydratase 1, mitochondrial", "gene_name": "FUM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42560-1", "protein_name": "Aconitate hydratase 1", "gene_name": "ACO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43725-1", "protein_name": "Cysteine synthase, mitochondrial", "gene_name": "OASC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42290-1", "protein_name": "Probable mitochondrial-processing peptidase subunit beta, mitochondrial", "gene_name": "MPPbeta", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42525-1", "protein_name": "Hexokinase-1", "gene_name": "HXK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0LGJ1-1", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase At1g74360", "gene_name": "F1M20.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I7I0-1", "protein_name": "Alanine aminotransferase 1, mitochondrial", "gene_name": "ALAAT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMN1-1", "protein_name": "Gamma carbonic anhydrase-like 2, mitochondrial", "gene_name": "GAMMACAL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P83291-1", "protein_name": "NADH-cytochrome b5 reductase-like protein", "gene_name": "CBR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVM1-1", "protein_name": "ABC transporter B family member 25, mitochondrial", "gene_name": "ABCB25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M7T0-1", "protein_name": "Peroxiredoxin-2F, mitochondrial", "gene_name": "PRXIIF", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7E4-1", "protein_name": "Formate dehydrogenase, chloroplastic/mitochondrial", "gene_name": "FDH1; FDH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM8-1", "protein_name": "Glycine-rich RNA-binding protein 2, mitochondrial", "gene_name": "RBG2; RBGA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0G9-1", "protein_name": "ABC transporter B family member 24, mitochondrial", "gene_name": "ABCB24", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M5K2-1", "protein_name": "Dihydrolipoyl dehydrogenase 2, mitochondrial", "gene_name": "LPD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M5K3-1", "protein_name": "Dihydrolipoyl dehydrogenase 1, mitochondrial", "gene_name": "LPD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M7Z1-1", "protein_name": "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial", "gene_name": "BCE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIB9-1", "protein_name": "Aconitate hydratase 3, mitochondrial", "gene_name": "ACO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIU0-1", "protein_name": "NAD-dependent malic enzyme 1, mitochondrial", "gene_name": "NAD-ME1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKT7-1", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial", "gene_name": "NDB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMX3-1", "protein_name": "Mitochondrial outer membrane protein porin 3", "gene_name": "VDAC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWG0-1", "protein_name": "Isovaleryl-CoA dehydrogenase, mitochondrial", "gene_name": "IVD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZJ5-1", "protein_name": "Serine hydroxymethyltransferase 1, mitochondrial", "gene_name": "SHM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZU25-1", "protein_name": "Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial", "gene_name": "MPPalpha1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1D3", "url": "https://www.uniprot.org/uniprotkb/Q9M1D3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14671022", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 142 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple signaling pathways in gene expression during sugar starvation. Pharmacological analysis of din gene expression in suspension-cultured cells of Arabidopsis.", "journal": "Plant Physiol.", "date": "2000", "authors": "Fujiki Y, Ito M, Nishida I, Watanabe A", "reference": { "type": "PubMed", "id": "11080291", "url": "https://pubmed.ncbi.nlm.nih.gov/11080291" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1C9-1", "protein_name": "Beta-glucosidase 30", "gene_name": "BGLU30; DIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38853-1", "protein_name": "Rhodanese-like domain-containing protein 15, chloroplastic", "gene_name": "SEN1; STR15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDY2-1", "protein_name": "2-oxoisovalerate dehydrogenase subunit beta 2, mitochondrial", "gene_name": "DIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZH5-1", "protein_name": "Mannose-6-phosphate isomerase 2", "gene_name": "DIN9; PMI2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M7Z1-1", "protein_name": "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial", "gene_name": "BCE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1C9", "url": "https://www.uniprot.org/uniprotkb/Q9M1C9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11080291", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dark-inducible genes from Arabidopsis thaliana are associated with leaf senescence and repressed by sugars.", "journal": "Physiol. Plantarum", "date": "2001", "authors": "Fujiki Yuki, Yoshikawa Yoko, Sato Tokuyuki, Inada Noriko, Ito Masaki, Nishida Ikuo, Watanabe Akira", "reference": { "type": "PubMed", "id": "11240919", "url": "https://pubmed.ncbi.nlm.nih.gov/11240919" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1C9-1", "protein_name": "Beta-glucosidase 30", "gene_name": "BGLU30; DIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX87-1", "protein_name": "Probable galactinol--sucrose galactosyltransferase 6", "gene_name": "DIN10; RFS6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H113-1", "protein_name": "Homoarginine-6-hydroxylase 2-ODD-C23.2", "gene_name": "2ODDC23.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZH5-1", "protein_name": "Mannose-6-phosphate isomerase 2", "gene_name": "DIN9; PMI2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1C9", "url": "https://www.uniprot.org/uniprotkb/Q9M1C9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11240919", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel molecular markers for late phases of the growth cycle of Arabidopsis thaliana cell-suspension cultures are expressed during organ senescence.", "journal": "Plant Physiol.", "date": "1996", "authors": "Callard D, Axelos M, Mazzolini L", "reference": { "type": "PubMed", "id": "8883383", "url": "https://pubmed.ncbi.nlm.nih.gov/8883383" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M1C9-1", "protein_name": "Beta-glucosidase 30", "gene_name": "BGLU30; DIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGA2-1", "protein_name": "Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic", "gene_name": "GDPD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M1C9", "url": "https://www.uniprot.org/uniprotkb/Q9M1C9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } 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chloroplastic", "gene_name": "TOC33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81283-1", "protein_name": "Translocase of chloroplast 159, chloroplastic", "gene_name": "TOC159", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7N4-1", "protein_name": "E3 ubiquitin-protein ligase SP1", "gene_name": "DAL1; SP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9STE8-1", "protein_name": "Protein TOC75-3, chloroplastic", "gene_name": "TOC75-3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYH3", "url": "https://www.uniprot.org/uniprotkb/Q9SYH3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 330, "end_pos": 330, "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of E3 ubiquitin-protein ligase activity; loss of auto-ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "Q8L7N4", "url": "https://www.uniprot.org/uniprotkb/Q8L7N4" }, { "database": "PubMed", "id": "23118188", "url": "https://pubmed.ncbi.nlm.nih.gov/23118188" } ], "uniprot_canonical_ac": "Q8L7N4-1" } ], "record_id": "pubmed.23118188", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "reference": { "type": "PubMed", "id": "17651370", "url": "https://pubmed.ncbi.nlm.nih.gov/17651370" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SXA5-1", "protein_name": "Secretory carrier-associated membrane protein 5", "gene_name": "SCAMP2; SCAMP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKT3-1", "protein_name": "Secretory carrier-associated membrane protein 1", "gene_name": "SCAMP1; SCAMP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2D8-1", "protein_name": "Uncharacterized protein At3g61260", "gene_name": "T20K12.160", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JUM8-1", "protein_name": "Pentatricopeptide repeat (PPR) superfamily protein", "gene_name": "DL3140C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P33543-1", "protein_name": "Putative kinase-like protein TMKL1", "gene_name": "TMKL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WQK2-1", "protein_name": "Probable protein S-acyltransferase 7", "gene_name": "PAT07", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVM0-1", "protein_name": "Probable inactive receptor kinase At5g58300", "gene_name": "MCK7.17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M306-1", "protein_name": "Probable protein S-acyltransferase 5", "gene_name": "PAT05", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M5P2-1", "protein_name": "Secretory carrier-associated membrane protein 3", "gene_name": "SC3; SCAMP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZ45-1", "protein_name": "Protein SHOU4-like", "gene_name": "SHOU4L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LT87-1", "protein_name": "Protein kinase superfamily protein", "gene_name": "", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LUN2-1", "protein_name": "Probable metal-nicotianamine transporter YSL5", "gene_name": "YSL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P19456-1", "protein_name": "ATPase 2, plasma membrane-type", "gene_name": "AHA2; HA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WR59-1", "protein_name": "Probable inactive receptor kinase At5g10020", "gene_name": "T31P16.10; T31P16_9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R2K3-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "gene_name": "SRF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q944A7-1", "protein_name": "Serine/threonine-protein kinase BSK1", "gene_name": "BSK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LP77-1", "protein_name": "Probable inactive receptor kinase At1g48480", "gene_name": "RKL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI6-1", "protein_name": "Probable inactive receptor kinase RLK902", "gene_name": "RLK902", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX66-1", "protein_name": "Receptor-like protein kinase HERK 1", "gene_name": "HERK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M8T0-1", "protein_name": "Probable inactive receptor kinase At3g02880", "gene_name": "F13E7.17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9C5-1", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At1g68400", "gene_name": "T2E12.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DO24-1", "protein_name": "Protein PSK SIMULATOR 3", "gene_name": "PSI3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0LGD7-1", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase At1g06840", "gene_name": "F4H5.8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SS31-1", "protein_name": "Probable calcium-binding protein CML36", "gene_name": "CML36", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C660-1", "protein_name": "Proline-rich receptor-like protein kinase PERK10", "gene_name": "PERK10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYM1-1", "protein_name": "Mechanosensitive ion channel protein 6", "gene_name": "MSL6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C636-1", "protein_name": "Transmembrane protein", "gene_name": "CC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LFP7-1", "protein_name": "Aquaporin NIP1-2", "gene_name": "NIP1-2; NIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX56-1", "protein_name": "Protein unc-13 homolog", "gene_name": "PATROL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FI03-1", "protein_name": "NDR1/HIN1-like protein 26", "gene_name": "NHL26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LI83-1", "protein_name": "Phospholipid-transporting ATPase 10", "gene_name": "ALA10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FM85-1", "protein_name": "Probable serine/threonine-protein kinase PBL16", "gene_name": "PBL16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LR65-1", "protein_name": "Probable protein phosphatase 2C 1", "gene_name": "PPC6-6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LRP3-1", "protein_name": "Probable receptor-like protein kinase At3g17420", "gene_name": "MTO12.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL76-1", "protein_name": "Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein", "gene_name": "T2G17.15; T2G17.16; T2G17_15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB58-1", "protein_name": "Protein S-acyltransferase 8", "gene_name": "PAT08", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XID3-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300", "gene_name": "F23M19.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XID5-1", "protein_name": "Protein PSK SIMULATOR 1", "gene_name": "PSI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCZ4-1", "protein_name": "Receptor-like protein kinase FERONIA", "gene_name": "FER", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49613-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 25", "gene_name": "HIPP25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0C8S1-1", "protein_name": "Probable disease resistance RPP8-like protein 2", "gene_name": "RPP8L2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NQK0-1", "protein_name": "TOM1-like protein 4", "gene_name": "TOL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3EDL4-1", "protein_name": "Probable serine/threonine-protein kinase At1g01540", "gene_name": "F22L4.8; F22L4_8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NMN6-1", "protein_name": "Probable sphingolipid transporter spinster homolog 1", "gene_name": "F6H11.180", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZT82-1", "protein_name": "Callose synthase 12", "gene_name": "CALS12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HZB5-1", "protein_name": "Protein NETWORKED 1D", "gene_name": "NET1D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82253-1", "protein_name": "BTB/POZ domain-containing protein SETH6", "gene_name": "SETH6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23052-1", "protein_name": "Uncharacterized TPR repeat-containing protein At1g05150", "gene_name": "YUP8H12.24", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPG9-1", "protein_name": "Protein IQ-DOMAIN 14", "gene_name": "IQD14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX77-1", "protein_name": "Protein NRT1/ PTR FAMILY 2.13", "gene_name": "NPF2.13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXX9-1", "protein_name": "E3 ubiquitin-protein ligase ATL6", "gene_name": "ATL6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4I7-1", "protein_name": "Calcium-dependent protein kinase 13", "gene_name": "CPK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHC8-1", "protein_name": "Vesicle-associated protein 1-2", "gene_name": "PVA12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940Y5-1", "protein_name": "Auxin efflux carrier component 7", "gene_name": "PIN7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q944G5-1", "protein_name": "Protein NRT1/ PTR FAMILY 2.10", "gene_name": "NPF2.10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKW9-1", "protein_name": "Sodium/hydrogen exchanger 7", "gene_name": "NHX7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80725-1", "protein_name": "ABC transporter B family member 4", "gene_name": "ABCB4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48946-1", "protein_name": "Cellulose synthase A catalytic subunit 1 [UDP-forming]", "gene_name": "CESA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYN5-1", "protein_name": "RPM1-interacting protein 4", "gene_name": "RIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43287-1", "protein_name": "Aquaporin PIP2-2", "gene_name": "PIP2-2; PIP2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P20431-1", "protein_name": "ATPase 3, plasma membrane-type", "gene_name": "AHA3; HA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKW4-1", "protein_name": "Calcium-dependent protein kinase 28", "gene_name": "CPK28", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P27450-1", "protein_name": "Probable serine/threonine-protein kinase CST", "gene_name": "CST", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9STV4-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 8", "gene_name": "CIPK8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82302-1", "protein_name": "Protein phosphatase 2C 29", "gene_name": "PLL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P30302-1", "protein_name": "Aquaporin PIP2-3", "gene_name": "PIP2-3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43286-1", "protein_name": "Aquaporin PIP2-1", "gene_name": "PIP2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q941L0-1", "protein_name": "Cellulose synthase A catalytic subunit 3 [UDP-forming]", "gene_name": "CESA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6B8-1", "protein_name": "Auxin efflux carrier component 1", "gene_name": "PIN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIJ0-1", "protein_name": "Respiratory burst oxidase homolog protein D", "gene_name": "RBOHD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ55-1", "protein_name": "Dynamin-2B", "gene_name": "DRP2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SG12-1", "protein_name": "CDPK-related kinase 6", "gene_name": "CRK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIC7-1", "protein_name": "Somatic embryogenesis receptor kinase 2", "gene_name": "SERK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZVM9-1", "protein_name": "Probable serine/threonine-protein kinase At1g54610", "gene_name": "T22H22.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHD7-1", "protein_name": "Serine/threonine-protein kinase BSK8", "gene_name": "BSK8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIM9-1", "protein_name": "CDPK-related kinase 4", "gene_name": "CRK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FX86-1", "protein_name": "CDPK-related kinase 8", "gene_name": "CRK8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LF79-1", "protein_name": "Calcium-transporting ATPase 8, plasma membrane-type", "gene_name": "ACA8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK35-1", "protein_name": "Receptor-like protein kinase THESEUS 1", "gene_name": "THE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZN7-1", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "gene_name": "HIPP26", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIE2-1", "protein_name": "ABC transporter G family member 36", "gene_name": "ABCG36", "tax_name": "Mouse-ear cress" }, { 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phospholipid-transporting ATPase 8", "gene_name": "ALA8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P98205-1", "protein_name": "Phospholipid-transporting ATPase 2", "gene_name": "ALA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLK6-1", "protein_name": "Phospholipid-transporting ATPase 6", "gene_name": "ALA6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX33", "url": "https://www.uniprot.org/uniprotkb/Q9SX33" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11402198", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.", "journal": "BMC Genomics", "date": "2002", "authors": "Gindullis Frank, Rose Annkatrin, Patel Shalaka, Meier Iris", "reference": { "type": "PubMed", "id": "11972898", "url": "https://pubmed.ncbi.nlm.nih.gov/11972898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SFF4-1", "protein_name": "Filament-like plant protein 2", "gene_name": "FPP2; VETH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLN1-1", "protein_name": "Filament-like plant protein 7", "gene_name": "FPP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA92-1", "protein_name": "Filament-like plant protein 3", "gene_name": "FPP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WSY2-1", "protein_name": "Filament-like plant protein 4", "gene_name": "FPP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAP9-1", "protein_name": "Filament-like plant protein 1", "gene_name": "FPP1; VETH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C698-1", "protein_name": "Filament-like plant protein 6", "gene_name": "FPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65649-1", "protein_name": "Filament-like plant protein 5", "gene_name": "FPP5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SFF4", "url": "https://www.uniprot.org/uniprotkb/Q9SFF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11972898", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel coiled-coil proteins regulate exocyst association with cortical microtubules in xylem cells via the conserved oligomeric golgi-complex 2 protein.", "journal": "Plant & cell physiology", "date": "2015-02", "authors": "Oda Yoshihisa, Iida Yuki, Nagashima Yoshinobu, Sugiyama Yuki, Fukuda Hiroo", "reference": { "type": "PubMed", "id": "25541219", "url": "https://pubmed.ncbi.nlm.nih.gov/25541219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SFF4-1", "protein_name": "Filament-like plant protein 2", "gene_name": "FPP2; VETH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA92-1", "protein_name": "Filament-like plant protein 3", "gene_name": "FPP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZD3-1", "protein_name": "Exocyst complex component EXO70A1", "gene_name": "EXO70A1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JRR1-1", "protein_name": "Conserved oligomeric Golgi complex subunit 2", "gene_name": "COG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SFF4", "url": "https://www.uniprot.org/uniprotkb/Q9SFF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25541219", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells.", "journal": "RNA", "date": "2000", "authors": "Lorkovi\u0107 Z J, Wieczorek Kirk D A, Klahre U, Hemmings-Mieszczak M, Filipowicz W", "reference": { "type": "PubMed", "id": "11105760", "url": "https://pubmed.ncbi.nlm.nih.gov/11105760" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SX80-1", "protein_name": "Polyadenylate-binding protein RBP47C'", "gene_name": "RBP47C'", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I3B3-1", "protein_name": "Polyadenylate-binding protein RBP47A", "gene_name": "RBP47A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SX79-1", "protein_name": "Polyadenylate-binding protein RBP47C", "gene_name": "RBP47C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93W34-1", "protein_name": "Polyadenylate-binding protein RBP45C", "gene_name": "RBP45C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FPJ8-1", "protein_name": "Polyadenylate-binding protein RBP45A", "gene_name": "RBP45A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WW84-1", "protein_name": "Polyadenylate-binding protein RBP47B", "gene_name": "RBP47B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAB3-1", "protein_name": "Polyadenylate-binding protein RBP45B", "gene_name": "RBP45B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX80", "url": "https://www.uniprot.org/uniprotkb/Q9SX80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11105760", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants.", "journal": "Mol. Cells", "date": "2011", "authors": "Peal Lila, Jambunathan Niranjani, Mahalingam Ramamurthy", "reference": { "type": "PubMed", "id": "21120628", "url": "https://pubmed.ncbi.nlm.nih.gov/21120628" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SX80-1", "protein_name": "Polyadenylate-binding protein RBP47C'", "gene_name": "RBP47C'", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I3B3-1", "protein_name": "Polyadenylate-binding protein RBP47A", "gene_name": "RBP47A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SX79-1", "protein_name": "Polyadenylate-binding protein RBP47C", "gene_name": "RBP47C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VXZ9-1", "protein_name": "Polyadenylate-binding protein RBP47B'", "gene_name": "RBP47B'", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93W34-1", "protein_name": "Polyadenylate-binding protein RBP45C", "gene_name": "RBP45C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ASP6-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein Q", "gene_name": "LIF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FPJ8-1", "protein_name": "Polyadenylate-binding protein RBP45A", "gene_name": "RBP45A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WW84-1", "protein_name": "Polyadenylate-binding protein RBP47B", "gene_name": "RBP47B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAB3-1", "protein_name": "Polyadenylate-binding protein RBP45B", "gene_name": "RBP45B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX80", "url": "https://www.uniprot.org/uniprotkb/Q9SX80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21120628", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a flavin-monooxygenase as the S-oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis.", "journal": "Plant J.", "date": "2007", "authors": "Hansen Bjarne G, Kliebenstein Daniel J, Halkier Barbara A", "reference": { "type": "PubMed", "id": "17461789", "url": 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"gene_name": "YUC7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXD5-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX-like 3", "gene_name": "T3P18.18; T3P18_18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SH25-1", "protein_name": "Putative flavin-containing monooxygenase FMO GS-OX-like 11", "gene_name": "F2K11.23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94K43-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX2", "gene_name": "FMOGS-OX2; FMO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BV5-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX-like 4", "gene_name": "T3P18.16; T3P18_16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Y23-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX4", "gene_name": "FMOGS-OX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKC0-1", "protein_name": "Probable indole-3-pyruvate monooxygenase 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9", "gene_name": "MXM12.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ59-1", "protein_name": "Indole-3-pyruvate monooxygenase YUCCA6", "gene_name": "YUC6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFM5-1", "protein_name": "Probable indole-3-pyruvate monooxygenase YUCCA4", "gene_name": "YUC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMA1-1", "protein_name": "Probable flavin-containing monooxygenase 1", "gene_name": "FMO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVQ0-1", "protein_name": "Probable indole-3-pyruvate monooxygenase YUCCA10", "gene_name": "YUC10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWW3-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX-like 6", "gene_name": "T28K15.13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWW6-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX-like 1", "gene_name": "T28K15.10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPL3-1", "protein_name": "Probable indole-3-pyruvate monooxygenase YUCCA11", "gene_name": "YUC11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MRX0-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX5", "gene_name": "FMOGS-OX5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXE1-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX3", "gene_name": "FMOGS-OX3; FMO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZY8-1", "protein_name": "Probable indole-3-pyruvate monooxygenase YUCCA1", "gene_name": "YUC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SS04-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX1", "gene_name": "FMOGS-OX1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXD9", "url": "https://www.uniprot.org/uniprotkb/Q9SXD9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17461789", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and characterization of a novel semi-lethal Arabidopsis thaliana mutant of gene for pentatricopeptide (PPR) repeat-containing protein.", "journal": "Genetica", "date": "2006", "authors": "Koc\u00e1bek Tom\u00e1s, Repkov\u00e1 Jana, Dudov\u00e1 Mark\u00e9ta, Hoyerov\u00e1 Kl\u00e1ra, Vrba Luk\u00e1s", "reference": { "type": "PubMed", "id": "17028967", "url": "https://pubmed.ncbi.nlm.nih.gov/17028967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9MAG8-1", "protein_name": "Putative pentatricopeptide repeat-containing protein At1g53330", "gene_name": "F12M16.23; F12M16_23", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9MAG8", "url": "https://www.uniprot.org/uniprotkb/Q9MAG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17028967", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis RHD3 gene is required for cell wall biosynthesis and actin organization.", "journal": "Planta", "date": "2003", "authors": "Hu Yun, Zhong Ruiqin, Morrison W Herbert, Ye Zheng-Hua", "reference": { "type": "PubMed", "id": "12844267", "url": "https://pubmed.ncbi.nlm.nih.gov/12844267" }, "referenced_glycans": [], "referenced_proteins": [ { 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Strong reduction in the cell wall thickness of fibers and vessels.", "evidence": [ { "database": "UniProtKB", "id": "P93042", "url": "https://www.uniprot.org/uniprotkb/P93042" }, { "database": "PubMed", "id": "12844267", "url": "https://pubmed.ncbi.nlm.nih.gov/12844267" }, { "database": "PubMed", "id": "9087433", "url": "https://pubmed.ncbi.nlm.nih.gov/9087433" } ], "uniprot_canonical_ac": "P93042-1" } ], "record_id": "pubmed.12844267", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Biol. 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}, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Cell Sci.", "date": "2010", "authors": "Xu Xiang Ming, Lin Hong, Maple Jodi, Bj\u00f6rkblom Benny, Alves Guido, Larsen Jan Petter, M\u00f8ller Simon Geir", "reference": { "type": "PubMed", "id": "20406884", "url": "https://pubmed.ncbi.nlm.nih.gov/20406884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9MAH3-1", "protein_name": "Protein DJ-1 homolog B", "gene_name": "DJ1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04922-1", "protein_name": "Probable glutathione peroxidase 2", "gene_name": "GPX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY09-1", "protein_name": "Protein DJ-1 homolog C", "gene_name": "DJ1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24704-1", "protein_name": "Superoxide dismutase [Cu-Zn] 1", "gene_name": "CSD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FPF0-1", "protein_name": "Protein DJ-1 homolog A", "gene_name": "DJ1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9MAH3", "url": "https://www.uniprot.org/uniprotkb/Q9MAH3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20406884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel glyoxalases from Arabidopsis thaliana.", "journal": "FEBS J.", "date": "2013", "authors": "Kwon Kyu, Choi Dongwook, Hyun Jae Kyung, Jung Hyun Suk, Baek Kwanghee, Park Chankyu", "reference": { "type": "PubMed", "id": "23651081", "url": "https://pubmed.ncbi.nlm.nih.gov/23651081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9MAH3-1", "protein_name": "Protein DJ-1 homolog B", "gene_name": "DJ1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1G8-1", "protein_name": "DJ-1 protein homolog F", "gene_name": "DJ1F", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZV19-1", "protein_name": "DJ-1 protein homolog E", "gene_name": "DJ1E; 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Almost abolishes catalytic activity; when associated with A-212.", "evidence": [ { "database": "UniProtKB", "id": "Q9M8R4", "url": "https://www.uniprot.org/uniprotkb/Q9M8R4" }, { "database": "PubMed", "id": "23651081", "url": "https://pubmed.ncbi.nlm.nih.gov/23651081" } ], "uniprot_canonical_ac": "Q9M8R4-1" }, { "start_pos": 212, "end_pos": 212, "sequence_org": "E", "sequence_mut": "A", "comment": "Reduces catalytic activity 2-fold. Almost abolishes catalytic activity; when associated with A-19.", "evidence": [ { "database": "UniProtKB", "id": "Q9M8R4", "url": "https://www.uniprot.org/uniprotkb/Q9M8R4" }, { "database": "PubMed", "id": "23651081", "url": "https://pubmed.ncbi.nlm.nih.gov/23651081" } ], "uniprot_canonical_ac": "Q9M8R4-1" }, { "start_pos": 287, "end_pos": 287, "sequence_org": "E", "sequence_mut": "A", "comment": "Reduces catalytic activity 6-fold. Almost abolishes catalytic activity; when associated with A-94.", "evidence": [ { "database": "UniProtKB", "id": "Q9M8R4", "url": "https://www.uniprot.org/uniprotkb/Q9M8R4" }, { "database": "PubMed", "id": "23651081", "url": "https://pubmed.ncbi.nlm.nih.gov/23651081" } ], "uniprot_canonical_ac": "Q9M8R4-1" }, { "start_pos": 313, "end_pos": 313, "sequence_org": "C", "sequence_mut": "A", "comment": "Reduces catalytic activity 2-fold. Abolishes catalytic activity; when associated with A-120.", "evidence": [ { "database": "UniProtKB", "id": "Q9M8R4", "url": "https://www.uniprot.org/uniprotkb/Q9M8R4" }, { "database": "PubMed", "id": "23651081", "url": "https://pubmed.ncbi.nlm.nih.gov/23651081" } ], "uniprot_canonical_ac": "Q9M8R4-1" }, { "start_pos": 314, "end_pos": 314, "sequence_org": "H", "sequence_mut": "A", "comment": "Reduces catalytic activity 3-fold. Almost abolishes catalytic activity; when associated with A-121.", "evidence": [ { "database": "UniProtKB", "id": "Q9M8R4", "url": "https://www.uniprot.org/uniprotkb/Q9M8R4" }, { "database": "PubMed", "id": "23651081", "url": "https://pubmed.ncbi.nlm.nih.gov/23651081" } ], "uniprot_canonical_ac": "Q9M8R4-1" }, { "start_pos": 94, "end_pos": 94, "sequence_org": "E", "sequence_mut": "A", "comment": "Reduces catalytic activity 10-fold. Almost abolishes catalytic activity; when associated with A-287.", "evidence": [ { "database": "UniProtKB", "id": "Q9M8R4", "url": "https://www.uniprot.org/uniprotkb/Q9M8R4" }, { "database": "PubMed", "id": "23651081", "url": "https://pubmed.ncbi.nlm.nih.gov/23651081" } ], "uniprot_canonical_ac": "Q9M8R4-1" } ], "record_id": "pubmed.23651081", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Signal peptide peptidase and its homologs in Arabidopsis thaliana - plant tissue-specific expression and distinct subcellular localization.", "journal": "FEBS J.", "date": "2008", "authors": "Tamura Tomoko, Asakura Tomiko, Uemura Tomohiro, Ueda Takashi, Terauchi Kaede, Misaka Takumi, Abe Keiko", "reference": { "type": "PubMed", "id": "18067581", "url": "https://pubmed.ncbi.nlm.nih.gov/18067581" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9MA44-1", "protein_name": "Signal peptide peptidase-like 5", "gene_name": "SPPL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q4V3B8-1", "protein_name": "Signal peptide peptidase-like 3", "gene_name": "SPPL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W469-1", "protein_name": "Signal peptide peptidase-like 2", "gene_name": "SPPL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Z32-1", "protein_name": "Signal peptide peptidase-like 1", "gene_name": "SPPL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WMJ8-1", "protein_name": "Signal peptide peptidase-like 4", "gene_name": "SPPL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81062-1", "protein_name": "Signal peptide peptidase", "gene_name": "SPP", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9MA44", "url": "https://www.uniprot.org/uniprotkb/Q9MA44" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18067581", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional characterization and expression analyses of the glucose-specific AtSTP9 monosaccharide transporter in pollen of Arabidopsis.", "journal": "Plant physiology", "date": "2003-09", "authors": "Schneidereit Alexander, Scholz-Starke Joachim, B\u00fcttner Michael", "reference": { "type": "PubMed", "id": "12970485", "url": "https://pubmed.ncbi.nlm.nih.gov/12970485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SX48-1", "protein_name": "Sugar transport protein 9", "gene_name": "STP9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX48", "url": "https://www.uniprot.org/uniprotkb/Q9SX48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12970485", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The secretory carrier membrane protein family: structure and membrane topology.", "journal": "Mol. Biol. Cell", "date": "2000", "authors": "Hubbard C, Singleton D, Rauch M, Jayasinghe S, Cafiso D, Castle D", "reference": { "type": "PubMed", "id": "10982391", "url": "https://pubmed.ncbi.nlm.nih.gov/10982391" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SKT3-1", "protein_name": "Secretory carrier-associated membrane protein 1", "gene_name": "SCAMP1; SCAMP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M5P2-1", "protein_name": "Secretory carrier-associated membrane protein 3", "gene_name": "SC3; SCAMP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LR68-1", "protein_name": "Secretory carrier-associated membrane protein 2", "gene_name": "SCAMP2; SCAMP4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SKT3", "url": "https://www.uniprot.org/uniprotkb/Q9SKT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10982391", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes.", "journal": "The Plant cell", "date": "2003-11", "authors": "Aukerman Milo J, Sakai Hajime", "reference": { "type": "PubMed", "id": "14555699", "url": "https://pubmed.ncbi.nlm.nih.gov/14555699" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SK03-1", "protein_name": "Ethylene-responsive transcription factor RAP2-7", "gene_name": "RAP2-7; 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Natl. Acad. Sci. U.S.A.", "date": "1997", "authors": "Okamuro J K, Caster B, Villarroel R, Van Montagu M, Jofuku K D", "reference": { "type": "PubMed", "id": "9192694", "url": "https://pubmed.ncbi.nlm.nih.gov/9192694" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SK03-1", "protein_name": "Ethylene-responsive transcription factor RAP2-7", "gene_name": "RAP2-7; RAP27", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6J9S1-1", "protein_name": "Ethylene-responsive transcription factor RAP2-11", "gene_name": "RAP2-11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1E4-1", "protein_name": "Ethylene-responsive transcription factor RAP2-4", "gene_name": "RAP2-4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SW63-1", "protein_name": "Ethylene-responsive transcription factor RAP2-10", "gene_name": "RAP2-10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LC30-1", "protein_name": "Ethylene-responsive transcription factor RAP2-1", "gene_name": "RAP2-1; RAP21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W3M3-1", "protein_name": "Ethylene-responsive transcription factor RAP2-9", "gene_name": "RAP2-9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7G1L2-1", "protein_name": "Ethylene-responsive transcription factor RAP2-6", "gene_name": "RAP2-6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80340-1", "protein_name": "Ethylene-responsive transcription factor 4", "gene_name": "ERF4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSA8-1", "protein_name": "Ethylene-responsive transcription factor RAP2-12", "gene_name": "RAP2-12; RAP212", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42736-1", "protein_name": "Ethylene-responsive transcription factor RAP2-3", "gene_name": "RAP2-3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P82280-1", "protein_name": "AP2/ERF and B3 domain-containing transcription repressor RAV2", "gene_name": "RAV2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LUM4-1", "protein_name": "Ethylene-responsive transcription factor RAP2-2", "gene_name": "RAP2-2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SK03", "url": "https://www.uniprot.org/uniprotkb/Q9SK03" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9192694", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner.", "journal": "The Plant journal : for cell and molecular biology", "date": "2006-07", "authors": "Kuusk Sandra, Sohlberg Joel J, Magnus Eklund D, Sundberg Eva", "reference": { "type": "PubMed", "id": "16740146", "url": "https://pubmed.ncbi.nlm.nih.gov/16740146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SJT8-1", "protein_name": "Protein SHI RELATED SEQUENCE 3", "gene_name": "SRS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KH89-1", "protein_name": "Protein SHI RELATED SEQUENCE 8", "gene_name": "SRS8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65517-1", "protein_name": "Protein SHI RELATED SEQUENCE 2", "gene_name": "SRS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SI19-1", "protein_name": "Protein SHI RELATED SEQUENCE 4", "gene_name": "SRS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94CK9-1", "protein_name": "Protein LATERAL ROOT PRIMORDIUM 1", "gene_name": "LRP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FXH7-1", "protein_name": "Protein SHI RELATED SEQUENCE 7", "gene_name": "SRS7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQZ5-1", "protein_name": "Protein SHI RELATED SEQUENCE 5", "gene_name": "SRS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XGX0-1", "protein_name": "Protein SHORT INTERNODES", "gene_name": "SHI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2U4-1", "protein_name": "Protein SHI RELATED SEQUENCE 6", "gene_name": "SRS6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SD40-1", "protein_name": "Protein SHI RELATED SEQUENCE 1", "gene_name": "SRS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJT8", "url": "https://www.uniprot.org/uniprotkb/Q9SJT8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16740146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Compatible solute transporters with similar substrate specificity but differential expression patterns.", "journal": "Plant physiology", "date": "2005-01", "authors": "Grallath Silke, Weimar Thilo, Meyer Andreas, Gumy Christophe, Suter-Grotemeyer Marianne, Neuhaus Jean-Marc, Rentsch Doris", "reference": { "type": "PubMed", "id": "15618414", "url": "https://pubmed.ncbi.nlm.nih.gov/15618414" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SJP9-1", "protein_name": "Proline transporter 3", "gene_name": "PROT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92961-1", "protein_name": "Proline transporter 1", "gene_name": "PROT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92962-1", "protein_name": "Proline transporter 2", "gene_name": "PROT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJP9", "url": "https://www.uniprot.org/uniprotkb/Q9SJP9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15618414", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In planta function of compatible solute transporters of the AtProT family.", "journal": "J. Exp. Bot.", "date": "2011", "authors": "Lehmann Silke, Gumy Christophe, Blatter Eva, Boeffel Silke, Fricke Wieland, Rentsch Doris", "reference": { "type": "PubMed", "id": "20959625", "url": "https://pubmed.ncbi.nlm.nih.gov/20959625" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SJP9-1", "protein_name": "Proline transporter 3", "gene_name": "PROT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92961-1", "protein_name": "Proline transporter 1", "gene_name": "PROT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92962-1", "protein_name": "Proline transporter 2", "gene_name": "PROT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJP9", "url": "https://www.uniprot.org/uniprotkb/Q9SJP9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Obata S, Shimoda C, Yamamoto M, Shinozaki K, Ohto C", "reference": { "type": "PubMed", "id": "9287109", "url": "https://pubmed.ncbi.nlm.nih.gov/9287109" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SCV4-1", "protein_name": "Beta-galactosidase 8", "gene_name": "BGAL8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4I9-1", "protein_name": "Protein MEI2-like 1", "gene_name": "ML1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB47-1", "protein_name": "GrpE protein homolog 2, mitochondrial", "gene_name": "Mge2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SCV4", "url": "https://www.uniprot.org/uniprotkb/Q9SCV4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9287109", "abstract": "", "glycosylation": [], "mutagenesis": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and sequence analysis of expansins - a highly conserved, multigene family of proteins that mediate cell wall extension in plants.", "journal": "Proc. 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U.S.A.", "date": "1995", "authors": "Shcherban T Y, Shi J, Durachko D M, Guiltinan M J, McQueen-Mason S J, Shieh M, Cosgrove D J", "reference": { "type": "PubMed", "id": "7568110", "url": "https://pubmed.ncbi.nlm.nih.gov/7568110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SKU2-1", "protein_name": "Expansin-B1", "gene_name": "EXPB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C554-1", "protein_name": "Expansin-A1", "gene_name": "EXPA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38864-1", "protein_name": "Expansin-A5", "gene_name": "EXPA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38865-1", "protein_name": "Expansin-A6", "gene_name": "EXPA6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38866-1", "protein_name": "Expansin-A2", "gene_name": "EXPA2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SKU2", "url": "https://www.uniprot.org/uniprotkb/Q9SKU2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7568110", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Group I allergens of grass pollen as cell wall-loosening agents.", "journal": "Proc. 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"uniprot_canonical_ac": "O82132-1", "protein_name": "Dehydration-responsive element-binding protein 2A", "gene_name": "DREB2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0L0-1", "protein_name": "Dehydration-responsive element-binding protein 1A", "gene_name": "DREB1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SIZ0", "url": "https://www.uniprot.org/uniprotkb/Q9SIZ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 91, "end_pos": 91, "sequence_org": "V", "sequence_mut": "A", "comment": "Affects the binding to the CRT/DRE cis-element.", "evidence": [ { "database": "UniProtKB", "id": "O82132", "url": "https://www.uniprot.org/uniprotkb/O82132" }, { "database": "PubMed", "id": "11798174", "url": "https://pubmed.ncbi.nlm.nih.gov/11798174" } ], "uniprot_canonical_ac": "O82132-1" }, { "start_pos": 96, "end_pos": 96, "sequence_org": "E", "sequence_mut": "D", "comment": "Affects the binding to the CRT/DRE cis-element.", "evidence": [ { "database": "UniProtKB", "id": "O82132", "url": "https://www.uniprot.org/uniprotkb/O82132" }, { "database": "PubMed", "id": "11798174", "url": "https://pubmed.ncbi.nlm.nih.gov/11798174" } ], "uniprot_canonical_ac": "O82132-1" }, { "start_pos": 63, "end_pos": 63, "sequence_org": "V", "sequence_mut": "A", "comment": "Affects the binding to the CRT/DRE cis-element.", "evidence": [ { "database": "UniProtKB", "id": "Q9M0L0", "url": "https://www.uniprot.org/uniprotkb/Q9M0L0" }, { "database": "PubMed", "id": "11798174", "url": "https://pubmed.ncbi.nlm.nih.gov/11798174" } ], "uniprot_canonical_ac": "Q9M0L0-1" } ], "record_id": "pubmed.11798174", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2006", "authors": "Hoekenga Owen A, Maron Lyza G, Pi\u00f1eros Miguel A, Can\u00e7ado Geraldo M A, Shaff Jon, Kobayashi Yuriko, Ryan Peter R, Dong Bei, Delhaize Emmanuel, Sasaki Takayuki, Matsumoto Hideaki, Yamamoto Yoko, Koyama Hiroyuki, Kochian Leon V", "reference": { "type": "PubMed", "id": "16740662", "url": "https://pubmed.ncbi.nlm.nih.gov/16740662" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SHM1-1", "protein_name": "Aluminum-activated malate transporter 6", "gene_name": "ALMT6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPQ8-1", "protein_name": "Putative aluminum-activated malate transporter 3", "gene_name": "ALMT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS23-1", "protein_name": "Aluminum-activated malate transporter 13", "gene_name": "ALMT13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRM9-1", "protein_name": "Aluminum-activated malate transporter 8", "gene_name": "ALMT8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJE8-1", "protein_name": "Aluminum-activated malate transporter 2", "gene_name": "ALMT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIN1-1", "protein_name": "Aluminum-activated malate transporter 7", "gene_name": "ALMT7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3E9Z9-1", "protein_name": "Putative aluminum-activated malate transporter 11", "gene_name": "ALMT11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS46-1", "protein_name": "Aluminum-activated malate transporter 9", "gene_name": "ALMT9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Z29-1", "protein_name": "Aluminum-activated malate transporter 5", "gene_name": "ALMT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23086-1", "protein_name": "Aluminum-activated malate transporter 10", "gene_name": "ALMT10; A_TM018A10.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49696-1", "protein_name": "Aluminum-activated malate transporter 12", "gene_name": "ALMT12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6L8-1", "protein_name": "Aluminum-activated malate transporter 4", "gene_name": "ALMT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS22-1", "protein_name": "Aluminum-activated malate transporter 14", "gene_name": "ALMT14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJE9-1", "protein_name": "Aluminum-activated malate transporter 1", "gene_name": "ALMT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SHM1", "url": "https://www.uniprot.org/uniprotkb/Q9SHM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16740662", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H(+)-ATPase.", "journal": "Trends Plant Sci.", "date": "2002", "authors": "Sze Heven, Schumacher Karin, M\u00fcller Mathias L, Padmanaban Senthilkumar, Taiz Lincoln", "reference": { "type": "PubMed", "id": "11950611", "url": "https://pubmed.ncbi.nlm.nih.gov/11950611" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SLA2-1", "protein_name": "V-type proton ATPase subunit c''2", "gene_name": "VHA-c''2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZH0-1", "protein_name": "V-type proton ATPase subunit G3", "gene_name": "VATG3; VHA-G3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DH94-1", "protein_name": "V-type proton ATPase subunit c5", "gene_name": "VHA-c5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59228-1", "protein_name": "V-type proton ATPase subunit c2", "gene_name": "AVA-P2; VHA-c2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59229-1", "protein_name": "V-type proton ATPase subunit c4", "gene_name": "AVA-P4; VHA-c4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX65-1", "protein_name": "V-type proton ATPase subunit H", "gene_name": "VHA-H", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZY7-1", "protein_name": "V-type proton ATPase subunit c''1", "gene_name": "VHA-c''1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DH92-1", "protein_name": "V-type proton ATPase subunit c1", "gene_name": "AVA-P1; VHA-c1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DH93-1", "protein_name": "V-type proton ATPase subunit c3", "gene_name": "VHA-C3; VHA-c3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82628-1", "protein_name": "V-type proton ATPase subunit G1", "gene_name": "VHA-G1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82629-1", "protein_name": "V-type proton ATPase subunit G2", "gene_name": "VHA-G2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZ13-1", "protein_name": "V-type proton ATPase subunit e2", "gene_name": "VHA-e2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XGM1-1", "protein_name": "V-type proton ATPase subunit D", "gene_name": "VHA-D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZQX4-1", "protein_name": "V-type proton ATPase subunit F", "gene_name": "VHA-F", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LHA4-1", "protein_name": "V-type proton ATPase subunit d2", "gene_name": "VHA-d2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0CAN7-1", "protein_name": "V-type proton ATPase subunit E3", "gene_name": "VHA-E3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWZ7-1", "protein_name": "V-type proton ATPase subunit a1", "gene_name": "VHA-a1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4E2-1", "protein_name": "V-type proton ATPase subunit B3", "gene_name": "VHA-B3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4S4-1", "protein_name": "V-type proton ATPase subunit a3", "gene_name": "VHA-a3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJI5-1", "protein_name": "V-type proton ATPase subunit d1", "gene_name": "VHA-d1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23654-1", "protein_name": "V-type proton ATPase catalytic subunit A", "gene_name": "VHA-A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZN1-1", "protein_name": "V-type proton ATPase subunit B2", "gene_name": "VAB2; VHA-B2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P11574-1", "protein_name": "V-type proton ATPase subunit B1", "gene_name": "VHA-B1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9Z8-1", "protein_name": "V-type proton ATPase subunit E2", "gene_name": "VHA-E2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLN5-1", "protein_name": "V-type proton ATPase subunit e1", "gene_name": "VHA-e1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39258-1", "protein_name": "V-type proton ATPase subunit E1", "gene_name": "VHA-E1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SDS7-1", "protein_name": "V-type proton ATPase subunit C", "gene_name": "VHA-C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJT7-1", "protein_name": "V-type proton ATPase subunit a2", "gene_name": "VHA-a2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SLA2", "url": "https://www.uniprot.org/uniprotkb/Q9SLA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11950611", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 28 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Organelle-specific isoenzymes of plant V-ATPase as revealed by in vivo-FRET analysis.", "journal": "BMC Cell Biol.", "date": "2008", "authors": "Seidel Thorsten, Schnitzer Daniel, Golldack Dortje, Sauer Markus, Dietz Karl-Josef", "reference": { "type": "PubMed", "id": "18507826", "url": "https://pubmed.ncbi.nlm.nih.gov/18507826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SLA2-1", "protein_name": "V-type proton ATPase subunit c''2", "gene_name": "VHA-c''2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZY7-1", "protein_name": "V-type proton ATPase subunit c''1", "gene_name": "VHA-c''1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DH93-1", "protein_name": "V-type proton ATPase subunit c3", "gene_name": "VHA-C3; VHA-c3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZ13-1", "protein_name": "V-type proton ATPase subunit e2", "gene_name": "VHA-e2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLN5-1", "protein_name": "V-type proton ATPase subunit e1", "gene_name": "VHA-e1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SLA2", "url": "https://www.uniprot.org/uniprotkb/Q9SLA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18507826", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Four closely-related RING-type E3 ligases, APD1-4, are involved in pollen mitosis II regulation in Arabidopsis.", "journal": "J. Integr. Plant Biol.", "date": "2012", "authors": "Luo Guo, Gu Hongya, Liu Jingjing, Qu Li-Jia", "reference": { "type": "PubMed", "id": "22897245", "url": "https://pubmed.ncbi.nlm.nih.gov/22897245" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SLA2-1", "protein_name": "V-type proton ATPase subunit c''2", "gene_name": "VHA-c''2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59229-1", "protein_name": "V-type proton ATPase subunit c4", "gene_name": "AVA-P4; VHA-c4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WS06-1", "protein_name": "E3 ubiquitin-protein ligase APD1", "gene_name": "APD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6DBH0-1", "protein_name": "E3 ubiquitin-protein ligase APD2", "gene_name": "APD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P17745-1", "protein_name": "Elongation factor Tu, chloroplastic", "gene_name": "TUFA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B3H754-1", "protein_name": "E3 ubiquitin-protein ligase APD3", "gene_name": "APD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4ISV9-1", "protein_name": "E3 ubiquitin-protein ligase APD4", "gene_name": "APD4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SLA2", "url": "https://www.uniprot.org/uniprotkb/Q9SLA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22897245", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Monitoring flux through the oxidative pentose phosphate pathway using [1-14C]gluconate.", "journal": "Planta", "date": "2002", "authors": "Garlick Andrew P, Moore Catherine, Kruger Nicholas J", "reference": { "type": "PubMed", "id": "12447540", "url": "https://pubmed.ncbi.nlm.nih.gov/12447540" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SLE0-1", "protein_name": "Gluconokinase", "gene_name": "T24I21.20; 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Biol.", "date": "2006", "authors": "Skirpan Andrea L, Dowd Peter E, Sijacic Paja, Jaworski Cynthia J, Gilroy Simon, Kao Teh-Hui", "reference": { "type": "PubMed", "id": "16897474", "url": "https://pubmed.ncbi.nlm.nih.gov/16897474" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SU36-1", "protein_name": "Oxysterol-binding protein-related protein 2B", "gene_name": "ORP2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAF0-1", "protein_name": "Oxysterol-binding protein-related protein 1D", "gene_name": "ORP1D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVD4-1", "protein_name": "Oxysterol-binding protein-related protein 4C", "gene_name": "ORP4C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SW00-1", "protein_name": "Oxysterol-binding protein-related protein 4B", "gene_name": "ORP4B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVZ9-1", "protein_name": "Oxysterol-binding protein-related protein 4A", "gene_name": "ORP4A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SR33-1", "protein_name": "Oxysterol-binding protein-related protein 3B", "gene_name": "ORP3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L751-1", "protein_name": "Oxysterol-binding protein-related protein 1C", "gene_name": "ORP1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Y40-1", "protein_name": "Oxysterol-binding protein-related protein 3C", "gene_name": "ORP3C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940Y1-1", "protein_name": "Oxysterol-binding protein-related protein 2A", "gene_name": "ORP2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80866-1", "protein_name": "Oxysterol-binding protein-related protein 1A", "gene_name": "ORP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8P9-1", "protein_name": "Oxysterol-binding protein-related protein 1B", "gene_name": "ORP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZM1-1", "protein_name": "Oxysterol-binding protein-related protein 3A", "gene_name": "ORP3A; 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