[ { "title": "A novel gastrokine, Gkn3, marks gastric atrophy and shows evidence of adaptive gene loss in humans.", "journal": "Gastroenterology", "date": "2010", "authors": "Menheniott TR, Peterson AJ, O'Connor L, Lee KS, Kalantzis A, Kondova I, Bontrop RE, Bell KM, Giraud AS", "reference": { "type": "PubMed", "id": "20138039", "url": "https://pubmed.ncbi.nlm.nih.gov/20138039" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D2XPP7-1", "protein_name": "Gastrokine-3", "gene_name": "GKN3", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q9D0T7-1", "protein_name": "Gastrokine-3", "gene_name": "Gkn3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0CG01-1", "protein_name": "Gastrokine-3", "gene_name": "GKN3P", "tax_name": "Human" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "D2XPP7", "url": "https://www.uniprot.org/uniprotkb/D2XPP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "mutagenesis": [ { "start_pos": 147, "end_pos": 147, "sequence_org": "C", "sequence_mut": "G", "comment": "Impaired secretion.", "evidence": [ { "database": "UniProtKB", "id": "Q9D0T7", "url": "https://www.uniprot.org/uniprotkb/Q9D0T7" }, { "database": "PubMed", "id": "20138039", "url": "https://pubmed.ncbi.nlm.nih.gov/20138039" } ], "uniprot_canonical_ac": "Q9D0T7-1" }, { "start_pos": 171, "end_pos": 171, "sequence_org": "C", "sequence_mut": "G", "comment": "Impaired secretion.", "evidence": [ { "database": "UniProtKB", "id": "Q9D0T7", "url": "https://www.uniprot.org/uniprotkb/Q9D0T7" }, { "database": "PubMed", "id": "20138039", "url": "https://pubmed.ncbi.nlm.nih.gov/20138039" } ], "uniprot_canonical_ac": "Q9D0T7-1" } ], "record_id": "pubmed.20138039", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HIF1A regulates follicular atresia through O-GlcNAcylation-mediated VEZF1/ET-1/FOXO1/BAX signaling in porcine granulosa cells.", "journal": "Journal of animal science and biotechnology", "date": "2025-09-20", "authors": "Jiang Aiwen, Li Jialong, Wang Luyao, Liu Yi, Wu Zhengchang, Wang Haifei, Wu Shenglong, Bao Wenbin", "reference": { "type": "PubMed", "id": "40973947", "url": "https://pubmed.ncbi.nlm.nih.gov/40973947" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RGX4-1", "protein_name": "Globin domain-containing protein", "gene_name": "LOC110259958", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1S564-1", "protein_name": "RNA 3'-terminal phosphate cyclase", "gene_name": "RTCA", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A0I8-1", "protein_name": "Drebrin", "gene_name": "DBN1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q9GL01-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGX4", "url": "https://www.uniprot.org/uniprotkb/F1RGX4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 50, "start_aa": "Ser", "end_pos": 50, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser50", "evidence": [ { "id": "40973947", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40973947" }, { "id": "F1RGX4", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F1RGX4" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "F1RGX4-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 53, "start_aa": "Ser", "end_pos": 53, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser53", "evidence": [ { "id": "40973947", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40973947" }, { "id": "F1RGX4", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F1RGX4" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "F1RGX4-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 27, "start_aa": "Ser", "end_pos": 27, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser27", "evidence": [ { "id": "40973947", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40973947" }, { "id": "F1S564", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F1S564" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "F1S564-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 161, "start_aa": "Thr", "end_pos": 161, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr161", "evidence": [ { "id": "40973947", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40973947" }, { "id": "A0A287A0I8", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=A0A287A0I8" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "A0A287A0I8-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 93, "start_aa": "Ser", "end_pos": 93, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser93", "evidence": [ { "id": "40973947", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40973947" }, { "id": "Q9GL01", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9GL01" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "Q9GL01-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 94, "start_aa": "Ser", "end_pos": 94, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser94", "evidence": [ { "id": "40973947", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40973947" }, { "id": "Q9GL01", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9GL01" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "Q9GL01-1" } ], "record_id": "pubmed.40973947", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 6 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "exact_o_linked_glycan_sites", "count": 6 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 6 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "exact_o_linked_glycan_sites", "count": 6 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cryo-EM structure of a mammalian RNA polymerase II elongation complex inhibited by alpha-amanitin.", "journal": "J. Biol. Chem.", "date": "2018", "authors": "Liu Xiangyang, Farnung Lucas, Wigge Christoph, Cramer Patrick", "reference": { "type": "PubMed", "id": "29550768", "url": "https://pubmed.ncbi.nlm.nih.gov/29550768" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LJR4-1", "protein_name": "DNA-directed RNA polymerase subunit", "gene_name": "POLR2A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.29550768", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of activated transcription complex Pol II-DSIF-PAF-SPT6.", "journal": "Nature", "date": "2018", "authors": "Vos SM, Farnung L, Boehning M, Wigge C, Linden A, Urlaub H, Cramer P", "reference": { "type": "PubMed", "id": "30135578", "url": "https://pubmed.ncbi.nlm.nih.gov/30135578" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LJR4-1", "protein_name": "DNA-directed RNA polymerase subunit", "gene_name": "POLR2A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.30135578", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of paused transcription complex Pol II-DSIF-NELF.", "journal": "Nature", "date": "2018", "authors": "Vos SM, Farnung L, Urlaub H, Cramer P", "reference": { "type": "PubMed", "id": "30135580", "url": "https://pubmed.ncbi.nlm.nih.gov/30135580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LJR4-1", "protein_name": "DNA-directed RNA polymerase subunit", "gene_name": "POLR2A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.30135580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation.", "journal": "Nat. Struct. Mol. Biol.", "date": "2020", "authors": "Vos SM, Farnung L, Linden A, Urlaub H, Cramer P", "reference": { "type": "PubMed", "id": "32541898", "url": "https://pubmed.ncbi.nlm.nih.gov/32541898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.32541898", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of mammalian RNA polymerase II pre-initiation complexes.", "journal": "Nature", "date": "2021", "authors": "Aibara Shintaro, Schilbach Sandra, Cramer Patrick", "reference": { "type": "PubMed", "id": "33902107", "url": "https://pubmed.ncbi.nlm.nih.gov/33902107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.33902107", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of the human Mediator and Mediator-bound preinitiation complex.", "journal": "Science", "date": "2021", "authors": "Chen Xizi, Yin Xiaotong, Li Jiabei, Wu Zihan, Qi Yilun, Wang Xinxin, Liu Weida, Xu Yanhui", "reference": { "type": "PubMed", "id": "33958484", "url": "https://pubmed.ncbi.nlm.nih.gov/33958484" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.33958484", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2.", "journal": "Commun. Biol.", "date": "2021", "authors": "Fianu Isaac, Dienemann Christian, Aibara Shintaro, Schilbach Sandra, Cramer Patrick", "reference": { "type": "PubMed", "id": "34021257", "url": "https://pubmed.ncbi.nlm.nih.gov/34021257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LJR4-1", "protein_name": "DNA-directed RNA polymerase subunit", "gene_name": "POLR2A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.34021257", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Allosteric transcription stimulation by RNA polymerase II super elongation complex.", "journal": "Mol. Cell", "date": "2021", "authors": "Chen Y, Vos SM, Dienemann C, Ninov M, Urlaub H, Cramer P", "reference": { "type": "PubMed", "id": "34265249", "url": "https://pubmed.ncbi.nlm.nih.gov/34265249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q96JC9-1", "protein_name": "ELL-associated factor 1", "gene_name": "EAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" }, { "uniprot_canonical_ac": "O00472-1", "protein_name": "RNA polymerase II elongation factor ELL2", "gene_name": "ELL2", "tax_name": "Human" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.34265249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of an inactive RNA polymerase II dimer.", "journal": "Nucleic Acids Res.", "date": "2021", "authors": "Aibara Shintaro, Dienemann Christian, Cramer Patrick", "reference": { "type": "PubMed", "id": "34530439", "url": "https://pubmed.ncbi.nlm.nih.gov/34530439" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.34530439", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of Integrator-mediated transcription regulation.", "journal": "Science", "date": "2021", "authors": "Fianu Isaac, Chen Ying, Dienemann Christian, Dybkov Olexandr, Linden Andreas, Urlaub Henning, Cramer Patrick", "reference": { "type": "PubMed", "id": "34762484", "url": "https://pubmed.ncbi.nlm.nih.gov/34762484" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q96HW7-1", "protein_name": "Integrator complex subunit 4", "gene_name": "INTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N201-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV88-1", "protein_name": "Integrator complex subunit 9", "gene_name": "INTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TA45-1", "protein_name": "Integrator complex subunit 11", "gene_name": "INTS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q9NVH2-1", "protein_name": "Integrator complex subunit 7", "gene_name": "INTS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL03-1", "protein_name": "Integrator complex subunit 6", "gene_name": "INTS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0H0-1", "protein_name": "Integrator complex subunit 2", "gene_name": "INTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P9B9-1", "protein_name": "Integrator complex subunit 5", "gene_name": "INTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "I3LJR4-1", "protein_name": "DNA-directed RNA polymerase subunit", "gene_name": "POLR2A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q75QN2-1", "protein_name": "Integrator complex subunit 8", "gene_name": "INTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.34762484", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RPAP2 regulates a transcription initiation checkpoint by inhibiting assembly of pre-initiation complex.", "journal": "Cell Rep.", "date": "2022", "authors": "Wang Xinxin, Qi Yilun, Wang Zhenning, Wang Li, Song Aixia, Tao Bolin, Li Jiabei, Zhao Dan, Zhang Hongwei, Jin Qianwei, Jiang Yi-Zhou, Chen Fei Xavier, Xu Yanhui, Chen Xizi", "reference": { "type": "PubMed", "id": "35476980", "url": "https://pubmed.ncbi.nlm.nih.gov/35476980" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.35476980", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of a backtracked hexasomal intermediate of nucleosome transcription.", "journal": "Mol. Cell", "date": "2022", "authors": "Farnung Lucas, Ochmann Moritz, Garg Gaurika, Vos Seychelle M, Cramer Patrick", "reference": { "type": "PubMed", "id": "35858621", "url": "https://pubmed.ncbi.nlm.nih.gov/35858621" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.35858621", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of +1 nucleosome-bound PIC-Mediator complex.", "journal": "Science", "date": "2022", "authors": "Chen Xizi, Wang Xinxin, Liu Weida, Ren Yulei, Qu Xuechun, Li Jiabei, Yin Xiaotong, Xu Yanhui", "reference": { "type": "PubMed", "id": "36201575", "url": "https://pubmed.ncbi.nlm.nih.gov/36201575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.36201575", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Rengachari Srinivasan, Schilbach Sandra, Kaliyappan Thangavelu, Gouge Jerome, Zumer Kristina, Schwarz Juliane, Urlaub Henning, Dienemann Christian, Vannini Alessandro, Cramer Patrick", "reference": { "type": "PubMed", "id": "36424526", "url": "https://pubmed.ncbi.nlm.nih.gov/36424526" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.36424526", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of transcription reduction by a promoter-proximal+1 nucleosome.", "journal": "Mol. Cell", "date": "2023", "authors": "Abril-Garrido Julio, Dienemann Christian, Grabbe Frauke, Velychko Taras, Lidschreiber Michael, Wang Haibo, Cramer Patrick", "reference": { "type": "PubMed", "id": "37148879", "url": "https://pubmed.ncbi.nlm.nih.gov/37148879" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.37148879", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural insights into human co-transcriptional capping.", "journal": "Mol. Cell", "date": "2023", "authors": "Garg Gaurika, Dienemann Christian, Farnung Lucas, Schwarz Juliane, Linden Andreas, Urlaub Henning, Cramer Patrick", "reference": { "type": "PubMed", "id": "37369200", "url": "https://pubmed.ncbi.nlm.nih.gov/37369200" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.37369200", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the transcribing RNA polymerase II-Elongin complex.", "journal": "Nat. Struct. Mol. Biol.", "date": "2023", "authors": "Chen Ying, Kokic Goran, Dienemann Christian, Dybkov Olexandr, Urlaub Henning, Cramer Patrick", "reference": { "type": "PubMed", "id": "37932450", "url": "https://pubmed.ncbi.nlm.nih.gov/37932450" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.37932450", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural visualization of transcription initiation in action.", "journal": "Science", "date": "2023", "authors": "Chen Xizi, Liu Weida, Wang Qianmin, Wang Xinxin, Ren Yulei, Qu Xuechun, Li Wanjun, Xu Yanhui", "reference": { "type": "PubMed", "id": "38127763", "url": "https://pubmed.ncbi.nlm.nih.gov/38127763" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.38127763", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.", "journal": "Mol. Cell", "date": "2024", "authors": "Su Bonnie G, Vos Seychelle M", "reference": { "type": "PubMed", "id": "38401543", "url": "https://pubmed.ncbi.nlm.nih.gov/38401543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.38401543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of Integrator-dependent RNA polymerase II termination.", "journal": "Nature", "date": "2024", "authors": "Fianu Isaac, Ochmann Moritz, Walshe James L, Dybkov Olexandr, Cruz Joseph Neos, Urlaub Henning, Cramer Patrick", "reference": { "type": "PubMed", "id": "38570683", "url": "https://pubmed.ncbi.nlm.nih.gov/38570683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q9NVM9-1", "protein_name": "Integrator complex subunit 13", "gene_name": "INTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SY0-1", "protein_name": "Integrator complex subunit 14", "gene_name": "INTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HW7-1", "protein_name": "Integrator complex subunit 4", "gene_name": "INTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N201-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96N11-1", "protein_name": "Integrator complex subunit 15", "gene_name": "INTS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q9NV88-1", "protein_name": "Integrator complex subunit 9", "gene_name": "INTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TA45-1", "protein_name": "Integrator complex subunit 11", "gene_name": "INTS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q9NVH2-1", "protein_name": "Integrator complex subunit 7", "gene_name": "INTS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CB8-1", "protein_name": "Integrator complex subunit 12", "gene_name": "INTS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL03-1", "protein_name": "Integrator complex subunit 6", "gene_name": "INTS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68E01-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0H0-1", "protein_name": "Integrator complex subunit 2", "gene_name": "INTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVR2-1", "protein_name": "Integrator complex subunit 10", "gene_name": "INTS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P9B9-1", "protein_name": "Integrator complex subunit 5", "gene_name": "INTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "I3LJR4-1", "protein_name": "DNA-directed RNA polymerase subunit", "gene_name": "POLR2A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q75QN2-1", "protein_name": "Integrator complex subunit 8", "gene_name": "INTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "mutagenesis": [ { "start_pos": 72, "end_pos": 73, "sequence_org": "DH", "sequence_mut": "KA", "comment": "Abolished RNA endonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q5TA45", "url": "https://www.uniprot.org/uniprotkb/Q5TA45" }, { "database": "PubMed", "id": "38570683", "url": "https://pubmed.ncbi.nlm.nih.gov/38570683" } ], "uniprot_canonical_ac": "Q5TA45-1" } ], "record_id": "pubmed.38570683", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Three-step mechanism of promoter escape by RNA polymerase II.", "journal": "Mol. Cell", "date": "2024", "authors": "Zhan Yumeng, Grabbe Frauke, Oberbeckmann Elisa, Dienemann Christian, Cramer Patrick", "reference": { "type": "PubMed", "id": "38604172", "url": "https://pubmed.ncbi.nlm.nih.gov/38604172" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.38604172", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of co-transcriptional RNA capping enzymes on paused transcription complex.", "journal": "Nat. Commun.", "date": "2024", "authors": "Li Yan, Wang Qianmin, Xu Yanhui, Li Ze", "reference": { "type": "PubMed", "id": "38816438", "url": "https://pubmed.ncbi.nlm.nih.gov/38816438" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.38816438", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment.", "journal": "Mol. Cell", "date": "2024", "authors": "Ramadhin Anisha R, Lee Shun-Hsiao, Zhou Di, Salmazo Anita, Gonzalo-Hansen Camila, van Sluis Marjolein, Blom Cindy M A, Janssens Roel C, Raams Anja, Dekkers Dick, Bezstarosti Karel, Slade Dea, Vermeulen Wim, Pines Alex, Demmers Jeroen A A, Bernecky Carrie, Sixma Titia K, Marteijn Jurgen A", "reference": { "type": "PubMed", "id": "39547223", "url": "https://pubmed.ncbi.nlm.nih.gov/39547223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P49842-4", "protein_name": "Winged helix repair factor 1", "gene_name": "WHR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "mutagenesis": [ { "start_pos": 181, "end_pos": 182, "sequence_org": "AG", "sequence_mut": "QQ", "comment": "Reduces ubiquitination of RNAPII.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547223", "url": "https://pubmed.ncbi.nlm.nih.gov/39547223" } ], "uniprot_canonical_ac": "P49842-4" }, { "start_pos": 190, "end_pos": 190, "sequence_org": "K", "sequence_mut": "D", "comment": "Reduces ubiquitination of RNAPII and interaction with DNA; when associated with D-216.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547223", "url": "https://pubmed.ncbi.nlm.nih.gov/39547223" } ], "uniprot_canonical_ac": "P49842-4" }, { "start_pos": 203, "end_pos": 204, "sequence_org": "KY", "sequence_mut": "EA", "comment": "Reduces ubiquitination of RNAPII. Reduces interaction with UVSSA.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547223", "url": "https://pubmed.ncbi.nlm.nih.gov/39547223" } ], "uniprot_canonical_ac": "P49842-4" }, { "start_pos": 216, "end_pos": 216, "sequence_org": "R", "sequence_mut": "D", "comment": "Reduces ubiquitination of RNAPII and interaction with DNA; when associated with D-190.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547223", "url": "https://pubmed.ncbi.nlm.nih.gov/39547223" } ], "uniprot_canonical_ac": "P49842-4" }, { "start_pos": 72, "end_pos": 73, "sequence_org": "RT", "sequence_mut": "AQ", "comment": "Reduces ubiquitination of RNAPII.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547223", "url": "https://pubmed.ncbi.nlm.nih.gov/39547223" } ], "uniprot_canonical_ac": "P49842-4" } ], "record_id": "pubmed.39547223", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "STK19 facilitates the clearance of lesion-stalled RNAPII during transcription-coupled DNA repair.", "journal": "Cell", "date": "2024", "authors": "van den Heuvel Diana, Rodr\u00edguez-Mart\u00ednez Marta, van der Meer Paula J, Nieto Moreno Nicolas, Park Jiyoung, Kim Hyun-Suk, van Schie Janne J M, Wondergem Annelotte P, D'Souza Areetha, Yakoub George, Herlihy Anna E, Kashyap Krushanka, Boissi\u00e8re Thierry, Walker Jane, Mitter Richard, Apelt Katja, de Lint Klaas, Kird\u00f6k Idil, Ljungman Mats, Wolthuis Rob M F, Cramer Patrick, Sch\u00e4rer Orlando D, Kokic Goran, Svejstrup Jesper Q, Luijsterburg Martijn S", "reference": { "type": "PubMed", "id": "39547229", "url": "https://pubmed.ncbi.nlm.nih.gov/39547229" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P49842-4", "protein_name": "Winged helix repair factor 1", "gene_name": "WHR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "mutagenesis": [ { "start_pos": 186, "end_pos": 186, "sequence_org": "K", "sequence_mut": "N", "comment": "Weakly impairs DNA repair.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547229", "url": "https://pubmed.ncbi.nlm.nih.gov/39547229" } ], "uniprot_canonical_ac": "P49842-4" }, { "start_pos": 200, "end_pos": 200, "sequence_org": "R", "sequence_mut": "W", "comment": "Does not affect DNA repair.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547229", "url": "https://pubmed.ncbi.nlm.nih.gov/39547229" } ], "uniprot_canonical_ac": "P49842-4" }, { "start_pos": 200, "end_pos": 201, "sequence_org": "RK", "sequence_mut": "AA", "comment": "Severely impairs DNA repair.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547229", "url": "https://pubmed.ncbi.nlm.nih.gov/39547229" } ], "uniprot_canonical_ac": "P49842-4" }, { "start_pos": 200, "end_pos": 201, "sequence_org": "RK", "sequence_mut": "EE", "comment": "Severely impairs DNA repair.", "evidence": [ { "database": "UniProtKB", "id": "P49842", "url": "https://www.uniprot.org/uniprotkb/P49842" }, { "database": "PubMed", "id": "39547229", "url": "https://pubmed.ncbi.nlm.nih.gov/39547229" } ], "uniprot_canonical_ac": "P49842-4" } ], "record_id": "pubmed.39547229", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of H3K36 trimethylation by SETD2 during chromatin transcription.", "journal": "Science", "date": "2025", "authors": "Markert Jonathan W, Soffers Jelly H, Farnung Lucas", "reference": { "type": "PubMed", "id": "39666822", "url": "https://pubmed.ncbi.nlm.nih.gov/39666822" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.39666822", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of mammalian transcriptional repression by noncoding RNA.", "journal": "Nat. Struct. Mol. Biol.", "date": "2025", "authors": "Tlu\u010dkov\u00e1 Katar\u00edna, Kaczmarek Beata, Salmazo Anita, Bernecky Carrie", "reference": { "type": "PubMed", "id": "39762629", "url": "https://pubmed.ncbi.nlm.nih.gov/39762629" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.39762629", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural insights into promoter-proximal pausing of RNA polymerase II at +1 nucleosome.", "journal": "Sci. Adv.", "date": "2025", "authors": "Naganuma Masahiro, Kujirai Tomoya, Ehara Haruhiko, Uejima Tamami, Ito Tomoko, Goto Mie, Aoki Mari, Henmi Masami, Miyamoto-Kohno Sayako, Shirouzu Mikako, Kurumizaka Hitoshi, Sekine Shun-Ichi", "reference": { "type": "PubMed", "id": "40043114", "url": "https://pubmed.ncbi.nlm.nih.gov/40043114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9W9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VEK9-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TRS6-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.40043114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IWS1 positions downstream DNA to globally stimulate Pol II elongation.", "journal": "Nat. Commun.", "date": "2025", "authors": "Yan Y., Urlaub H., Cramer P., Maier K.C., Ochmann M., Zumer K., Walshe J.L., Bauerle M., Neef U., Rus P., Zheenbekova A.", "reference": { "type": "PubMed", "id": "40835814", "url": "https://pubmed.ncbi.nlm.nih.gov/40835814" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.40835814", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular mechanism of co-transcriptional H3K36 methylation by SETD2.", "journal": "Nat. Commun.", "date": "2025", "authors": "Urlaub H., Cramer P., Dybkov O., Dienemann C., Ochmann M., Walshe J.L., Neef U., Oberthur C., Zheenbekova A.", "reference": { "type": "PubMed", "id": "41162378", "url": "https://pubmed.ncbi.nlm.nih.gov/41162378" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RKE4-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "POLR2J", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D0NYY2-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "protein_name": "RNA polymerase II subunit D", "gene_name": "POLR2D", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LSI7-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULF8-1", "protein_name": "RNA polymerase II, I and III subunit H", "gene_name": "POLR2H", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGP4-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "POLR2B", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKE4", "url": "https://www.uniprot.org/uniprotkb/F1RKE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.41162378", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The architecture of the mammalian respirasome.", "journal": "Nature", "date": "2016", "authors": "Gu Jinke, Wu Meng, Guo Runyu, Yan Kaige, Lei Jianlin, Gao Ning, Yang Maojun", "reference": { "type": "PubMed", "id": "27654917", "url": "https://pubmed.ncbi.nlm.nih.gov/27654917" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RRC9-1", "protein_name": "Mitochondria localized glutamic acid rich protein", "gene_name": "MGARP", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1SZP7-1", "protein_name": "NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial", "gene_name": "NDUFV1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1NRT6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13", "gene_name": "NDUFA13", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R526-1", "protein_name": "NADH:ubiquinone oxidoreductase core subunit S7", "gene_name": "NDUFS7", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1S031-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial", "gene_name": "NDUFS6", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SIS9-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "NDUFA10", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SL07-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "NDUFA9", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SLR1-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8", "gene_name": "NDUFA8", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SGC6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "gene_name": "NDUFB5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SV23-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "NDUFS5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QSA7-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9", "gene_name": "NDUFB9", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R3N7-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial", "gene_name": "NDUFS2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1V1H9-1", "protein_name": "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial", "gene_name": "NDUFS1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BG40-1", "protein_name": "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial", "gene_name": "NDUFV2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VPG4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "NDUFA3", "tax_name": "Pig" }, { "uniprot_canonical_ac": "K7GR43-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "gene_name": "NDUFA1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LDC3-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10", "gene_name": "NDUFB10", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGM4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11", "gene_name": "NDUFA11", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RRC9", "url": "https://www.uniprot.org/uniprotkb/F1RRC9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.27654917", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis.", "journal": "Genome Biol.", "date": "2005", "authors": "Caldwell Randolph B, Kierzek Andrzej M, Arakawa Hiroshi, Bezzubov Yuri, Zaim Jolanta, Fiedler Petra, Kutter Stefan, Blagodatski Artem, Kostovska Diyana, Koter Marek, Plachy Jiri, Carninci Piero, Hayashizaki Yoshihide, Buerstedde Jean-Marie", "reference": { "type": "PubMed", "id": "15642098", "url": "https://pubmed.ncbi.nlm.nih.gov/15642098" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5F3L7-1", "protein_name": "Transmembrane protein 229B", "gene_name": "TMEM229B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3M0-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 24", "gene_name": "MED24", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3N0-1", "protein_name": "Sugar phosphate exchanger 3", "gene_name": "SLC37A3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3N5-1", "protein_name": "Kelch-like protein 14", "gene_name": "KLHL14", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3U0-1", "protein_name": "Histone deacetylase complex subunit SAP130", "gene_name": "SAP130", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3Z7-1", "protein_name": "CTD small phosphatase-like protein 2", "gene_name": "CTDSPL2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3Z9-1", "protein_name": "Zinc finger CCCH domain-containing protein 14", "gene_name": "ZC3H14", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F410-1", "protein_name": "Transmembrane protein 18", "gene_name": "TMEM18", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F414-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F415-1", "protein_name": "TBC1 domain family member 23", "gene_name": "TBC1D23", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F464-1", "protein_name": "Lipoma-preferred partner homolog", "gene_name": "LPP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F471-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3", "gene_name": "PPP6R3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F478-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B", "gene_name": "ANKRD44", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F479-1", "protein_name": "Serine/threonine-protein kinase 11-interacting protein", "gene_name": "STK11IP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4A9-1", "protein_name": "ADP-ribosylation factor-like protein 6-interacting protein 4", "gene_name": "ARL6IP4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHK9-1", "protein_name": "Protein LLP homolog", "gene_name": "LLPH", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHN5-1", "protein_name": "THAP domain-containing protein 5", "gene_name": "THAP5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHP7-1", "protein_name": "ELL-associated factor 2", "gene_name": "EAF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHQ2-1", "protein_name": "Galectin-related protein", "gene_name": "LGALSL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHS3-1", "protein_name": "Nuclear nucleic acid-binding protein C1D", "gene_name": "C1D", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHV2-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "NAA35", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHV8-1", "protein_name": "RecQ-mediated genome instability protein 1", "gene_name": "RMI1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI11-1", "protein_name": "Leucine-rich repeat-containing protein 45", "gene_name": "LRRC45", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI25-1", "protein_name": "Transmembrane protein 129", "gene_name": "TMEM129", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI27-1", "protein_name": "Nuclear apoptosis-inducing factor 1", "gene_name": "NAIF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI33-1", "protein_name": "Kelch-like protein 7", "gene_name": "KLHL7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI40-1", "protein_name": "tRNA-queuosine alpha-mannosyltransferase", "gene_name": "QTMAN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI57-1", "protein_name": "Trafficking protein particle complex subunit 3", "gene_name": "TRAPPC3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI67-1", "protein_name": "NHL repeat-containing protein 2", "gene_name": "NHLRC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI69-1", "protein_name": "Large ribosomal subunit protein mL37", "gene_name": "MRPL37", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI72-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "HNRNPDL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI89-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "TRAPPC11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIC8-1", "protein_name": "Importin-13", "gene_name": "IPO13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZID0-1", "protein_name": "NmrA-like family domain-containing protein 1", "gene_name": "NMRAL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIF3-1", "protein_name": "Ufm1-specific protease 2", "gene_name": "UFSP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIG0-1", "protein_name": "Neurochondrin", "gene_name": "NCDN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIH0-1", "protein_name": "Integrator complex subunit 11", "gene_name": "INTS11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIH2-1", "protein_name": "Vacuolar fusion protein MON1 homolog A", "gene_name": "MON1A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIH9-1", "protein_name": "Coiled-coil domain-containing protein 174", "gene_name": "CCDC174", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZII3-1", "protein_name": "Transmembrane protein adipocyte-associated 1 homolog", "gene_name": "TPRA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIJ0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIJ2-1", "protein_name": "Small ribosomal subunit protein bS6m", "gene_name": "MRPS6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIJ8-1", "protein_name": "Uracil phosphoribosyltransferase homolog", "gene_name": "UPRT", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIK2-1", "protein_name": "PDZ domain-containing protein 11", "gene_name": "PDZD11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIK6-1", "protein_name": "BSD domain-containing protein 1", "gene_name": "BSDC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIK9-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "COPE", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIL4-1", "protein_name": "Spermatid perinuclear RNA-binding protein", "gene_name": "STRBP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIM6-1", "protein_name": "Protein AATF", "gene_name": "AATF", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIP2-1", "protein_name": "Ragulator complex protein LAMTOR3", "gene_name": "LAMTOR3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIR8-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "TIMM9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIS9-1", "protein_name": "Protein shisa-5", "gene_name": "Shisa5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIT8-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIT9-1", "protein_name": "Lysosomal dipeptide transporter MFSD1", "gene_name": "MFSD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIU1-1", "protein_name": "Mapk-regulated corepressor-interacting protein 1", "gene_name": "MCRIP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIW5-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ20-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ40-1", "protein_name": "REST corepressor 3", "gene_name": "RCOR3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ65-1", "protein_name": "Protein FAM76A", "gene_name": "FAM76A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ69-1", "protein_name": "AT-rich interactive domain-containing protein 5B", "gene_name": "ARID5B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ73-1", "protein_name": "Protein CREG1", "gene_name": "CREG1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ75-1", "protein_name": "Sodium/hydrogen exchanger 8", "gene_name": "", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ81-1", "protein_name": "Endophilin-B2", "gene_name": "SH3GLB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ85-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJA4-1", "protein_name": "Actin-related protein 5", "gene_name": "ACTR5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJC7-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJC8-1", "protein_name": "Transcription termination factor 3, mitochondrial", "gene_name": "MTERF3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJE4-1", "protein_name": "SREBP regulating gene protein", "gene_name": "SPRING", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJG3-1", "protein_name": "Transcription factor BTF3 homolog 4", "gene_name": "BTF3L4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJG8-1", "protein_name": "Hydroxysteroid dehydrogenase-like protein 1", "gene_name": "HSDL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJH7-1", "protein_name": "Protein CNPPD1", "gene_name": "CNPPD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJJ1-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJJ9-1", "protein_name": "Osteoclast-stimulating factor 1", "gene_name": "OSTF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJK5-1", "protein_name": "Ligand-dependent nuclear receptor corepressor-like protein", "gene_name": "LCORL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJN0-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "ASNSD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJN1-1", "protein_name": "Replication termination factor 2", "gene_name": "RTF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJP5-1", "protein_name": "Fibronectin type-III domain-containing protein 3a", "gene_name": "FNDC3A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJP7-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "KCTD7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJP9-1", "protein_name": "Cyclin-L1", "gene_name": "CCNL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJQ3-1", "protein_name": "Protein lin-52 homolog", "gene_name": "LIN52", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJR3-1", "protein_name": "Oligosaccharyltransferase complex subunit OSTC", "gene_name": "OSTC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJU2-1", "protein_name": "Kelch-like protein 15", "gene_name": "KLHL15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJV4-1", "protein_name": "Mini-chromosome maintenance complex-binding protein", "gene_name": "MCMBP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJV6-1", "protein_name": "Calcipressin-3", "gene_name": "RCAN3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJV7-1", "protein_name": "SIN3-HDAC complex-associated factor", "gene_name": "SINHCAF", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJX4-1", "protein_name": "RNA-binding protein 38", "gene_name": "RBM38", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJY3-1", "protein_name": "GTPase-activating Rap/Ran-GAP domain-like protein 3", "gene_name": "GARNL3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJY9-1", "protein_name": "Nuclear envelope integral membrane protein 2", "gene_name": "NEMP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK09-1", "protein_name": "Protein Hikeshi", "gene_name": "HIKESHI", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK13-1", "protein_name": "Centrosomal protein kizuna", "gene_name": "KIZ", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK14-1", "protein_name": "DET1- and DDB1-associated protein 1", "gene_name": "DDA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK17-1", "protein_name": "N-lysine methyltransferase SETD6", "gene_name": "SETD6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK32-1", "protein_name": "Transmembrane protein 208", "gene_name": "TMEM208", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK63-1", "protein_name": "Activated RNA polymerase II transcriptional coactivator p15", "gene_name": "SUB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK69-1", "protein_name": "Proteasomal ATPase-associated factor 1", "gene_name": "PAAF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK74-1", "protein_name": "tRNA-splicing ligase complex subunit ASW", "gene_name": "RCJMB04_12m8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK95-1", "protein_name": "Coiled-coil domain-containing protein 43", "gene_name": "CCDC43", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKB1-1", "protein_name": "CDC42 small effector protein 1", "gene_name": "CDC42SE1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKD5-1", "protein_name": "RRP12-like protein", "gene_name": "RRP12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKF4-1", "protein_name": "High mobility group protein 20A", "gene_name": "HMG20A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKG1-1", "protein_name": "Large ribosomal subunit protein mL51", "gene_name": "MRPL51", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKG2-1", "protein_name": "Bromodomain-containing protein 7", "gene_name": "BRD7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKG8-1", "protein_name": "Golgi to ER traffic protein 4 homolog", "gene_name": "GET4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKH3-1", "protein_name": "Polycomb protein EED", "gene_name": "EED", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKH8-1", "protein_name": "Protein odr-4 homolog", "gene_name": "ODR4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKI4-1", "protein_name": "Coiled-coil domain-containing protein 93", "gene_name": "CCDC93", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKJ5-1", "protein_name": "Solute carrier family 68 member 1", "gene_name": "SLC68A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK0-1", "protein_name": "LysM and putative peptidoglycan-binding domain-containing protein 3", "gene_name": "LYSMD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK2-1", "protein_name": "Integrator complex subunit 9", "gene_name": "INTS9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKL5-1", "protein_name": "Prolyl endopeptidase-like", "gene_name": "PREPL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKL7-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKN3-1", "protein_name": "Protein PHTF2", "gene_name": "PHTF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKQ3-1", "protein_name": "RNA polymerase II-associated protein 3", "gene_name": "RPAP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKQ5-1", "protein_name": "Protein GOLM2", "gene_name": "GOLM2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKQ6-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "POLE2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKT1-1", "protein_name": "TBCC domain-containing protein 1", "gene_name": "TBCCD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKT8-1", "protein_name": "Large ribosomal subunit protein uL15m", "gene_name": "MRPL15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKT9-1", "protein_name": "Mesoderm induction early response protein 1", "gene_name": "MIER1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKU4-1", "protein_name": "Integrator complex subunit 2", "gene_name": "INTS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKU8-1", "protein_name": "p21-activated protein kinase-interacting protein 1-like", "gene_name": "PAK1IP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKW2-1", "protein_name": "Protein LZIC", "gene_name": "LZIC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKW5-1", "protein_name": "ADP-ribosylation factor-like protein 2-binding protein", "gene_name": "ARL2BP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKW8-1", "protein_name": "Highly divergent homeobox", "gene_name": "HDX", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKW9-1", "protein_name": "Muscleblind-like protein 1", "gene_name": "MBNL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKY9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 20", "gene_name": "MED20", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKZ9-1", "protein_name": "Lipase maturation factor 2", "gene_name": "LMF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL12-1", "protein_name": "Protein phosphatase 1 regulatory subunit 21", "gene_name": "PPP1R21", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL26-1", "protein_name": "Phosphoribosyl pyrophosphate synthase-associated protein 2", "gene_name": "PRPSAP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL42-1", "protein_name": "eIF5-mimic protein 1", "gene_name": "BZW2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL77-1", "protein_name": "Chaperone Ric-8A", "gene_name": "RIC8A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL91-1", "protein_name": "Integrator complex subunit 7", "gene_name": "INTS7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLC1-1", "protein_name": "Large ribosomal subunit protein mL50", "gene_name": "MRPL50", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLC8-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C", "gene_name": "ANKRD52", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLC9-1", "protein_name": "Golgin subfamily A member 7", "gene_name": "GOLGA7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLD4-1", "protein_name": "Transmembrane protein 11, mitochondrial", "gene_name": "TMEM11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLG0-1", "protein_name": "Acetoacetyl-CoA synthetase", "gene_name": "AACS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLH0-1", "protein_name": "NTF2-related export protein 2", "gene_name": "NXT2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLH9-1", "protein_name": "Protein CDV3 homolog", "gene_name": "CDV3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK7-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLL9-1", "protein_name": "Breast cancer metastasis-suppressor 1-like protein", "gene_name": "BRMS1L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLN2-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "CCZ1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLS2-1", "protein_name": "Enhancer of mRNA-decapping protein 3", "gene_name": "EDC3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLS8-1", "protein_name": "Integrator complex subunit 10", "gene_name": "INTS10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLT0-1", "protein_name": "Exportin-7", "gene_name": "XPO7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLT3-1", "protein_name": "NEDD4-binding protein 3 homolog", "gene_name": "N4BP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLT7-1", "protein_name": "eIF5-mimic protein 2", "gene_name": "BZW1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLW2-1", "protein_name": "Protein orai-2", "gene_name": "ORAI2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLX4-1", "protein_name": "Rho guanine nucleotide exchange factor 3", "gene_name": "Arhgef3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLX5-1", "protein_name": "Zinc finger Ran-binding domain-containing protein 2", "gene_name": "ZRANB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM31-1", "protein_name": "Transmembrane protein 170A", "gene_name": "TMEM170A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM33-1", "protein_name": "Heterochromatin protein 1-binding protein 3", "gene_name": "HP1BP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM41-1", "protein_name": "Testis-expressed protein 10 homolog", "gene_name": "TEX10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM46-1", "protein_name": "Protein LBH", "gene_name": "LBH", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM71-1", "protein_name": "Transcription factor SPT20 homolog", "gene_name": "SUPT20H", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM86-1", "protein_name": "Coiled-coil domain-containing protein 50", "gene_name": "CCDC50", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMB2-1", "protein_name": "Heme-binding protein 1", "gene_name": "HEBP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMB7-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMC3-1", "protein_name": "WD repeat, SAM and U-box domain-containing protein 1", "gene_name": "WDSUB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMC6-1", "protein_name": "GSK3-beta interaction protein", "gene_name": "GSKIP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMD1-1", "protein_name": "14-3-3 protein theta", "gene_name": "YWHAQ", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMD2-1", "protein_name": "Ankyrin repeat and MYND domain-containing protein 2", "gene_name": "ANKMY2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMG5-1", "protein_name": "Active regulator of SIRT1", "gene_name": "RPS19BP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMI4-1", "protein_name": "Major vault protein", "gene_name": "MVP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMJ7-1", "protein_name": "Protein CIP2A homolog", "gene_name": "CIP2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMJ9-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMK7-1", "protein_name": "Ubiquitin-fold modifier 1", "gene_name": "UFM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML4-1", "protein_name": "Cysteine and histidine-rich domain-containing protein 1", "gene_name": "CHORDC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML5-1", "protein_name": "Protein LSM12", "gene_name": "LSM12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML6-1", "protein_name": "Mitochondrial inner membrane scaffold 1", "gene_name": "MIMS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML7-1", "protein_name": "Lysosomal-associated transmembrane protein 4A", "gene_name": "LAPTM4A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMM5-1", "protein_name": "Transcriptional regulator ZNF706", "gene_name": "ZNF706", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMR9-1", "protein_name": "Exportin-4", "gene_name": "XPO4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMS1-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMS4-1", "protein_name": "Nuclear receptor coactivator 7", "gene_name": "NCOA7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMS6-1", "protein_name": "Tudor domain-containing protein 3", "gene_name": "TDRD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMU6-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 2", "gene_name": "PPP4R2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMV2-1", "protein_name": "Spindle assembly abnormal protein 6 homolog", "gene_name": "SASS6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMV8-1", "protein_name": "Rap1 GTPase-activating protein 2", "gene_name": "RAP1GAP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMW3-1", "protein_name": "Apoptosis inhibitor 5", "gene_name": "API5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q6GVH4-1", "protein_name": "Gametogenetin-binding protein 2", "gene_name": "GGNBP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q8JGM8-1", "protein_name": "BH3-interacting domain death agonist", "gene_name": "BID", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q8JHZ8-1", "protein_name": "Paladin", "gene_name": "PALD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLC6-1", "protein_name": "Ankyrin repeat domain-containing protein 10", "gene_name": "ANKRD10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ97-1", "protein_name": "Uncharacterized protein KIAA1143 homolog", "gene_name": "KIAA1143", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMW5-1", "protein_name": "Rho GTPase-activating protein 26", "gene_name": "ARHGAP26", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3K0-1", "protein_name": "Tetratricopeptide repeat protein 27", "gene_name": "TTC27", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHV7-1", "protein_name": "SPRY domain-containing protein 7", "gene_name": "SPRYD7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHX5-1", "protein_name": "Myb/SANT-like DNA-binding domain-containing protein 2", "gene_name": "MSANTD2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZID2-1", "protein_name": "uS5 assembly chaperone PDCD2L", "gene_name": "PDCD2L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ26-1", "protein_name": "Uncharacterized protein KIAA1671 homolog", "gene_name": "RCJMB04_21h11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ37-1", "protein_name": "Rab9 effector protein with kelch motifs", "gene_name": "RABEPK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJA3-1", "protein_name": "Cerebellar degeneration-related protein 2", "gene_name": "CDR2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJU8-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 1", "gene_name": "TNFAIP8L1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKB8-1", "protein_name": "Cysteine-rich DPF motif domain-containing protein 1", "gene_name": "CDPF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKI7-1", "protein_name": "WD repeat and coiled-coil-containing protein", "gene_name": "WDCP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL79-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLD2-1", "protein_name": "DEP domain-containing protein 1B", "gene_name": "DEPDC1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK8-1", "protein_name": "UPF0669 protein C6orf120 homolog", "gene_name": "RCJMB04_5l6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLM8-1", "protein_name": "Protein FAM133", "gene_name": "FAM133", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLN0-1", "protein_name": "Leucine-rich repeat-containing protein 40", "gene_name": "LRRC40", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM74-1", "protein_name": "RING finger protein 141", "gene_name": "RNF141", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BUG7-1", "protein_name": "Protein SPT2 homolog", "gene_name": "SPTY2D1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIV9-1", "protein_name": "Scinderin", "gene_name": "SCIN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKN5-1", "protein_name": "Protein FAM53A", "gene_name": "FAM53A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKX9-1", "protein_name": "ER lumen protein-retaining receptor 2", "gene_name": "KDELR2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLR5-1", "protein_name": "Cytochrome b-c1 complex subunit Rieske, mitochondrial", "gene_name": "UQCRFS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMQ0-1", "protein_name": "Armadillo repeat-containing protein 1", "gene_name": "ARMC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIR5-1", "protein_name": "High mobility group nucleosome-binding domain-containing protein 3", "gene_name": "HMGN2P46; HMGN3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJH8-1", "protein_name": "Sodium/bile acid cotransporter 7", "gene_name": "SLC10A7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJS6-1", "protein_name": "Polyadenylate-binding protein-interacting protein 2", "gene_name": "PAIP2B; PAIP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMP3-1", "protein_name": "Transmembrane protein 184C", "gene_name": "TMEM184C", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJA9-1", "protein_name": "BLOC-1-related complex subunit 5", "gene_name": "BORCS5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHL0-1", "protein_name": "V-type proton ATPase subunit d 2", "gene_name": "ATP6V0D2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJD9-1", "protein_name": "Leptin receptor gene-related protein", "gene_name": "LEPROT", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ64-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit M", "gene_name": "EIF3M", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLR6-1", "protein_name": "Rho guanine nucleotide exchange factor 6", "gene_name": "ARHGEF6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHM5-1", "protein_name": "Protein RER1", "gene_name": "RER1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI58-1", "protein_name": "Atos homolog protein A", "gene_name": "ATOSA; FAM214A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKB6-1", "protein_name": "Cysteine-rich PDZ-binding protein", "gene_name": "CRIPT", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIF1-1", "protein_name": "Adipocyte plasma membrane-associated protein", "gene_name": "APMAP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI78-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8", "gene_name": "TNFAIP8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMM3-1", "protein_name": "Rho GTPase-activating protein 15", "gene_name": "ARHGAP15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLL0-1", "protein_name": "Vacuolar ATPase assembly integral membrane protein VMA21", "gene_name": "VMA21", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F428-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit L", "gene_name": "EIF3L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLD3-1", "protein_name": "Kelch-like protein 13", "gene_name": "KLHL13; KLHL9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F476-1", "protein_name": "CDAN1-interacting nuclease 1", "gene_name": "CDIN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJK0-1", "protein_name": "Ras-specific guanine nucleotide-releasing factor RalGPS1", "gene_name": "RALGPS1; RALGPS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI04-1", "protein_name": "CYFIP-related Rac1 interactor A", "gene_name": "CYRIA; FAM49A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLW3-1", "protein_name": "Dymeclin", "gene_name": "DYM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKP4-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "TRAPPC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F359-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "TRAPPC5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLJ4-1", "protein_name": "Transmembrane protein 70, mitochondrial", "gene_name": "TMEM70", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3Z3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKP2-1", "protein_name": "Cobalamin trafficking protein CblD", "gene_name": "MMADHC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI42-1", "protein_name": "Malignant T-cell-amplified sequence 1", "gene_name": "MCTS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F409-1", "protein_name": "Small integral membrane protein 15", "gene_name": "SMIM15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKJ4-1", "protein_name": "FGFR1 oncogene partner 2 homolog", "gene_name": "FGFR1OP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJL8-1", "protein_name": "Protein ABHD13", "gene_name": "ABHD13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLN7-1", "protein_name": "P2R1A-PPP2R2A-interacting phosphatase regulator 1", "gene_name": "PABIR1; PABIR3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKU1-1", "protein_name": "DCN1-like protein 1", "gene_name": "DCUN1D1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F413-1", "protein_name": "Stromal membrane-associated protein 2", "gene_name": "SMAP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK21-1", "protein_name": "Integrator complex subunit 14", "gene_name": "INTS14; VWA9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL35-1", "protein_name": "Arginine and glutamate-rich protein 1", "gene_name": "ARGLU1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLR7-1", "protein_name": "Lysosomal enzyme trafficking factor", "gene_name": "LYSET; TMEM251", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLY2-1", "protein_name": "Hydroxyacylglutathione hydrolase-like protein", "gene_name": "HAGHL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK25-1", "protein_name": "SUZ RNA-binding domain-containing", "gene_name": "SZRD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJI6-1", "protein_name": "Protein NATD1", "gene_name": "NATD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIL9-1", "protein_name": "KIF-binding protein", "gene_name": "KIF1BP; Kifbp", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3S2-1", "protein_name": "Pleckstrin homology domain-containing family B member 2", "gene_name": "PLEKHB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKP7-1", "protein_name": "Solute carrier family 25 member 36", "gene_name": "SLC25A36", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJZ4-1", "protein_name": "Solute carrier family 35 member G2", "gene_name": "SLC35G2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ39-1", "protein_name": "Density-regulated protein", "gene_name": "DENR", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLT5-1", "protein_name": "Pleckstrin homology domain-containing family J member 1", "gene_name": "PLEKHJ1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMC0-1", "protein_name": "Endothelial differentiation-related factor 1 homolog", "gene_name": "EDF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P81628-1", "protein_name": "Endoplasmic reticulum resident protein 29", "gene_name": "ERP29", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q1T7C0-1", "protein_name": "Centromere protein L", "gene_name": "CENPL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F361-1", "protein_name": "TBC domain-containing protein kinase-like protein", "gene_name": "TBCK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F368-1", "protein_name": "Putative monooxygenase p33MONOX", "gene_name": "P33MONOX", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F371-1", "protein_name": "Protein strawberry notch homolog 1", "gene_name": "SBNO1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3A4-1", "protein_name": "RELT-like protein 1", "gene_name": "RELL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3C8-1", "protein_name": "Pleckstrin homology domain-containing family O member 1", "gene_name": "PLEKHO1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3D1-1", "protein_name": "Zinc finger CCHC domain-containing protein 8", "gene_name": "ZCCHC8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3D7-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3G0-1", "protein_name": "Rho GTPase-activating protein 19", "gene_name": "ARHGAP19", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3G6-1", "protein_name": "PHD finger protein 20-like protein 1", "gene_name": "PHF20L1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3I0-1", "protein_name": "Protein PRRC1", "gene_name": "PRRC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3I6-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "SLC38A12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3L3-1", "protein_name": "Protein FAM234B", "gene_name": "FAM234B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3L4-1", "protein_name": "Protein DENND6A", "gene_name": "DENND6A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML9-1", "protein_name": "Actin-histidine N-methyltransferase", "gene_name": "SETD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHQ5-1", "protein_name": "Cholinephosphotransferase 1", "gene_name": "CHPT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3G7-1", "protein_name": "Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1", "gene_name": "C1GALT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJS0-1", "protein_name": "Casein kinase I isoform gamma-1", "gene_name": "CSNK1G1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL67-1", "protein_name": "Endoplasmic reticulum membrane sensor NFE2L1", "gene_name": "NFE2L1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F389-1", "protein_name": "WW domain-containing oxidoreductase", "gene_name": "WWOX", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHV1-1", "protein_name": "Ras-related protein Rab-33B", "gene_name": "RAB33B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIV7-1", "protein_name": "Deubiquitinase DESI2", "gene_name": "DESI2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHS1-1", "protein_name": "Elongator complex protein 3", "gene_name": "ELP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL19-1", "protein_name": "Syntaxin-6", "gene_name": "STX10; STX6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJW4-1", "protein_name": "Vesicle-trafficking protein SEC22b", "gene_name": "SEC22B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKC9-1", "protein_name": "14-3-3 protein zeta", "gene_name": "YWHAZ", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK5-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q2VB19-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F480-1", "protein_name": "Inositol-tetrakisphosphate 1-kinase", "gene_name": "ITPK1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM36-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q76LW2-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 2", "gene_name": "HS6ST2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F398-1", "protein_name": "E3 ubiquitin-protein transferase MAEA", "gene_name": "MAEA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMC9-1", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3W3-1", "protein_name": "Mitogen-activated protein kinase 6", "gene_name": "MAPK4; MAPK6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMV3-1", "protein_name": "Protein Dr1", "gene_name": "DR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F450-1", "protein_name": "PAN2-PAN3 deadenylation complex catalytic subunit PAN2", "gene_name": "PAN2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q8QGH2-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHW4-1", "protein_name": "Ras-related protein Rab-5B", "gene_name": "RAB5B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIS0-1", "protein_name": "Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial", "gene_name": "SDHD", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3K4-1", "protein_name": "WD repeat-containing protein 48", "gene_name": "WDR48", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3E8-1", "protein_name": "BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2", "gene_name": "TNFAIP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P25207-1", "protein_name": "Nuclear transcription factor Y subunit beta", "gene_name": "NFYB", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P62985-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q09121-1", "protein_name": "Eukaryotic translation initiation factor 5A-1", "gene_name": "EIF5A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F336-1", "protein_name": "Acyl-coenzyme A thioesterase MBLAC2", "gene_name": "MBLAC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F352-1", "protein_name": "GTPase NRas", "gene_name": "NRAS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F362-1", "protein_name": "Cell cycle control protein 50A", "gene_name": "TMEM30A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F378-1", "protein_name": "Cathelicidin-B1", "gene_name": "CATHB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F383-1", "protein_name": "Signal peptide peptidase-like 2B", "gene_name": "SPPL2B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3A6-1", "protein_name": "Ubiquitin thioesterase OTU1", "gene_name": "YOD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3B1-1", "protein_name": "Transcriptional corepressor CBFA2T3", "gene_name": "CBFA2T3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3N6-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase BAP1", "gene_name": "BAP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3R2-1", "protein_name": "Lysine-specific demethylase 5B", "gene_name": "KDM5B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3T9-1", "protein_name": "UDP-glucose 6-dehydrogenase", "gene_name": "UGDH", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3W5-1", "protein_name": "Histone-lysine N-methyltransferase SUV39H2", "gene_name": "SUV39H2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F433-1", "protein_name": "PRA1 family protein 3", "gene_name": "ARL6IP5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F485-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4B1-1", "protein_name": "Phosphoglycolate phosphatase", "gene_name": "PGP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5QJC4-1", "protein_name": "DNA cross-link repair 1A protein", "gene_name": "DCLRE1A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHS0-1", "protein_name": "BRCA1-A complex subunit Abraxas 1", "gene_name": "ABRAXAS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHT1-1", "protein_name": "Acyl-CoA dehydrogenase family member 11", "gene_name": "ACAD11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHY5-1", "protein_name": "E3 ubiquitin-protein ligase CHIP", "gene_name": "STUB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHZ0-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHZ4-1", "protein_name": "E3 ubiquitin-protein ligase Hakai", "gene_name": "CBLL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI23-1", "protein_name": "Hydroxyacylglutathione hydrolase, mitochondrial", "gene_name": "HAGH", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI49-1", "protein_name": "Ribose-phosphate pyrophosphokinase 2", "gene_name": "PRPS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI74-1", "protein_name": "ATP-dependent RNA helicase DHX30", "gene_name": "DHX30", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI87-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "TBCD", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZID5-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 28", "gene_name": "USP28", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIK0-1", "protein_name": "Phosphatidylinositol 4-kinase type 2-beta", "gene_name": "PI4K2B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIR9-1", "protein_name": "E3 ubiquitin-protein ligase RNF185", "gene_name": "RNF185", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIU9-1", "protein_name": "Zinc transporter ZIP9", "gene_name": "SLC39A9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIV1-1", "protein_name": "Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR2", "gene_name": "MTMR2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIV5-1", "protein_name": "Programmed cell death protein 10", "gene_name": "PDCD10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIW1-1", "protein_name": "Twinkle mtDNA helicase", "gene_name": "TWNK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIX8-1", "protein_name": "Lysine-specific demethylase 3A", "gene_name": "KDM3A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ58-1", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 beta", "gene_name": "PIP5K1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ66-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJD8-1", "protein_name": "DGAT1/2-independent enzyme synthesizing storage lipids", "gene_name": "TMEM68", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJH6-1", "protein_name": "Serine/threonine-protein kinase ULK3", "gene_name": "ULK3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJH9-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJJ2-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJL4-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJL5-1", "protein_name": "Adenylosuccinate synthetase isozyme 2", "gene_name": "ADSS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJN4-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 10", "gene_name": "USP10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJN8-1", "protein_name": "Thioredoxin reductase-like selenoprotein T", "gene_name": "SELENOT", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJT1-1", "protein_name": "Abasic site processing protein HMCES", "gene_name": "HMCES", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJW8-1", "protein_name": "Denticleless protein homolog", "gene_name": "DTL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJY5-1", "protein_name": "Structural maintenance of chromosomes protein 5", "gene_name": "SMC5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK10-1", "protein_name": "NSFL1 cofactor p47", "gene_name": "NSFL1C", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK33-1", "protein_name": "Mitochondrial proton/calcium exchanger protein", "gene_name": "LETM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK90-1", "protein_name": "Arylsulfatase K", "gene_name": "ARSK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKA6-1", "protein_name": "WASH complex subunit 1", "gene_name": "WASHC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKB9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX6", "gene_name": "DDX6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKD7-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKD9-1", "protein_name": "Kelch-like protein 20", "gene_name": "KLHL20", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKH4-1", "protein_name": "Nuclear distribution protein nudE-like 1", "gene_name": "NDEL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK7-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKM1-1", "protein_name": "pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3", "gene_name": "FTSJ3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKN1-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKN2-1", "protein_name": "Membrane-associated progesterone receptor component 1", "gene_name": "PGRMC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKP6-1", "protein_name": "Adenosine deaminase", "gene_name": "ADA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKR7-1", "protein_name": "Long-chain-fatty-acid--CoA ligase ACSBG2", "gene_name": "ACSBG2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKS6-1", "protein_name": "Beclin-1", "gene_name": "BECN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKS8-1", "protein_name": "UbiA prenyltransferase domain-containing protein 1", "gene_name": "UBIAD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKU5-1", "protein_name": "Ras-related protein Rab-14", "gene_name": "RAB14", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKV8-1", "protein_name": "Kinesin-like protein KIF2A", "gene_name": "KIF2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKY0-1", "protein_name": "Endosomal/lysosomal proton channel TMEM175", "gene_name": "TMEM175", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL21-1", "protein_name": "Cyanocobalamin reductase / alkylcobalamin dealkylase", "gene_name": "MMACHC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL33-1", "protein_name": "Serine-threonine kinase receptor-associated protein", "gene_name": "STRAP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL34-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 6", "gene_name": "CPSF6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL36-1", "protein_name": "Protrudin", "gene_name": "ZFYVE27", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL43-1", "protein_name": "Acireductone dioxygenase", "gene_name": "ADI1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLA6-1", "protein_name": "Unconventional myosin-Ic", "gene_name": "MYO1C", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLC5-1", "protein_name": "ATP synthase F(1) complex catalytic subunit beta, mitochondrial", "gene_name": "ATP5F1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLL1-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLM0-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLN4-1", "protein_name": "Flap endonuclease 1", "gene_name": "FEN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLP8-1", "protein_name": "Insulin-like growth factor 2 mRNA-binding protein 3", "gene_name": "IGF2BP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLS7-1", "protein_name": "Cytokine-like nuclear factor N-PAC", "gene_name": "GLYR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLX2-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM57-1", "protein_name": "Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase", "gene_name": "HACD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM98-1", "protein_name": "Stress-70 protein, mitochondrial", "gene_name": "HSPA9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMA2-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMC2-1", "protein_name": "Unconventional myosin-Ig", "gene_name": "MYO1G", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMG1-1", "protein_name": "E3 UFM1-protein ligase 1", "gene_name": "UFL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMH1-1", "protein_name": "Septin-2", "gene_name": "SEPTIN2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML0-1", "protein_name": "BRISC and BRCA1-A complex member 2", "gene_name": "BABAM2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMM1-1", "protein_name": "Ribosomal oxygenase 1", "gene_name": "RIOX1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMN2-1", "protein_name": "DNA replication licensing factor MCM3", "gene_name": "MCM3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMQ9-1", "protein_name": "Peroxisomal targeting signal 1 receptor", "gene_name": "PEX5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMS2-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit alpha2", "gene_name": "PAFAH1B2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMS3-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMV9-1", "protein_name": "GATOR2 complex protein WDR24", "gene_name": "WDR24", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q7T3T4-1", "protein_name": "Phosphatidylcholine:ceramide cholinephosphotransferase 1", "gene_name": "SGMS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q805F9-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90YB1-1", "protein_name": "DNA ligase 4", "gene_name": "LIG4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9DEA3-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3Z1-1", "protein_name": "CTP synthase 2", "gene_name": "CTPS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F448-1", "protein_name": "Golgi pH regulator", "gene_name": "GPR89A; GPR89", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIQ3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPKL; HNRNPK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P53033-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1N9Y5-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK92-1", "protein_name": "Spastin", "gene_name": "SPAST", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C656-1", "protein_name": "E3 ubiquitin-protein ligase HACE1", "gene_name": "HACE1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q76I89-1", "protein_name": "Kinetochore protein NDC80 homolog", "gene_name": "NDC80", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMF3-1", "protein_name": "Deoxycytidine kinase", "gene_name": "DCK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJR8-1", "protein_name": "Very long chain fatty acid elongase 6", "gene_name": "ELOVL6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0CG62-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIU3-1", "protein_name": "Dual specificity tyrosine-phosphorylation-regulated kinase 2", "gene_name": "DYRK2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL72-1", "protein_name": "60 kDa heat shock protein, mitochondrial", "gene_name": "HSPD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3L1-1", "protein_name": "Ribosomal protein S6 kinase alpha-5", "gene_name": "RPS6KA5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJL9-1", "protein_name": "Deoxynucleoside triphosphate triphosphohydrolase SAMHD1", "gene_name": "SAMHD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK40-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1", "gene_name": "SMARCB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMT0-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM91-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMQ2-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A5HNF6-1", "protein_name": "Myeloid differentiation primary response protein MyD88", "gene_name": "MYD88", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NQJ3-1", "protein_name": "Mismatch repair endonuclease PMS2", "gene_name": "PMS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "I0IUP3-1", "protein_name": "DNA helicase MCM8", "gene_name": "MCM8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P79781-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F356-1", "protein_name": "Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha", "gene_name": "PIP4K2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F364-1", "protein_name": "Multidrug resistance-associated protein 1", "gene_name": "ABCC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3L9-1", "protein_name": "Rho family-interacting cell polarization regulator 2", "gene_name": "RIPOR2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3W6-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3X0-1", "protein_name": "Lysocardiolipin acyltransferase 1", "gene_name": "LCLAT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F407-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT4A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F425-1", "protein_name": "Protein lin-7 homolog C", "gene_name": "LIN7C", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F468-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F470-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "RAB8A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F499-1", "protein_name": "Dynamin-like GTPase OPA1, mitochondrial", "gene_name": "OPA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI51-1", "protein_name": "ADP-ribosylhydrolase ARH3", "gene_name": "ADPRS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIA0-1", "protein_name": "RNA N(6)-adenosine-methyltransferase METTL16", "gene_name": "METTL16", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZID6-3", "protein_name": "Cytosolic 5'-nucleotidase 3A", "gene_name": "NT5C3A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIN0-1", "protein_name": "Lysophosphatidylserine lipase ABHD12", "gene_name": "ABHD12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIT5-1", "protein_name": "Ras-related protein Rab-10", "gene_name": "RAB10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIZ4-1", "protein_name": "Cytosolic purine 5'-nucleotidase", "gene_name": "NT5C2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJB4-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase subunit alpha", "gene_name": "CHUK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJF4-1", "protein_name": "Peroxiredoxin-6", "gene_name": "PRDX6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJK4-1", "protein_name": "Serine/threonine-protein kinase 4", "gene_name": "STK4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJM7-1", "protein_name": "Deoxycytidine kinase 2", "gene_name": "DCK2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJN2-1", "protein_name": "Ras-related protein Rab-11A", "gene_name": "RAB11A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJT0-1", "protein_name": "ATP-dependent RNA helicase SUPV3L1, mitochondrial", "gene_name": "SUPV3L1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJV9-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKD1-1", "protein_name": "Choline/ethanolaminephosphotransferase 1", "gene_name": "CEPT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKE7-1", "protein_name": "UMP-CMP kinase", "gene_name": "CMPK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKG3-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "DNA2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKL6-1", "protein_name": "Membrane-bound glycerophospholipid O-acyltransferase 2", "gene_name": "mboat2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKM0-1", "protein_name": "Dysbindin", "gene_name": "DTNBP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL13-1", "protein_name": "Acyl-coenzyme A diphosphatase NUDT19", "gene_name": "NUDT19", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL18-1", "protein_name": "N-fatty-acyl-amino acid synthase/hydrolase PM20D1", "gene_name": "PM20D1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL74-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLC7-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLF4-1", "protein_name": "Proton-coupled zinc antiporter SLC30A5", "gene_name": "SLC30A5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLL8-1", "protein_name": "Glycerol-3-phosphate acyltransferase 3", "gene_name": "GPAT3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLN1-1", "protein_name": "Phosphoglycerate mutase 1", "gene_name": "PGAM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLV4-1", "protein_name": "RNA cytosine-C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM14-1", "protein_name": "Na(+)/H(+) exchange regulatory cofactor NHE-RF1", "gene_name": "NHERF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM39-1", "protein_name": "B-cell lymphoma 6 protein homolog", "gene_name": "BCL6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM44-1", "protein_name": "Calcineurin B homologous protein 1", "gene_name": "CHP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMA3-1", "protein_name": "RNA-binding protein 24", "gene_name": "RBM24", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMK5-1", "protein_name": "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6", "gene_name": "JMJD6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q679P3-1", "protein_name": "PDZ and LIM domain protein 7", "gene_name": "PDLIM7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q6DV79-1", "protein_name": "Signal transducer and activator of transcription 3", "gene_name": "STAT3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q6PZ02-1", "protein_name": "Cysteine protease ATG4B", "gene_name": "ATG4B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q76I90-1", "protein_name": "Kinetochore protein Nuf2", "gene_name": "NUF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9YH06-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9I920-1", "protein_name": "RecQ-like DNA helicase BLM", "gene_name": "BLM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9I9E0-1", "protein_name": "Serine/threonine-protein kinase TAO3", "gene_name": "TAOK3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHP3-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "CFAP20", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIF5-1", "protein_name": "Tetraspanin-12", "gene_name": "TSPAN12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIM5-1", "protein_name": "Methionine aminopeptidase 1", "gene_name": "METAP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIH3-1", "protein_name": "Zinc transporter 6", "gene_name": "SLC30A6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q2YHT5-1", "protein_name": "Cell surface glycoprotein CD200 receptor 1-B", "gene_name": "CD200R1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3B2-1", "protein_name": "E3 ubiquitin-protein ligase RNF166", "gene_name": "RNF166", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIG3-1", "protein_name": "Mitochondrial outer membrane protein SLC25A46", "gene_name": "SLC25A46", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F384-1", "protein_name": "Protein YIPF3", "gene_name": "YIPF3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3R7-1", "protein_name": "DDB1- and CUL4-associated factor 12", "gene_name": "DCAF12L2; DCAF12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIE8-1", "protein_name": "Activating transcription factor 7-interacting protein 1", "gene_name": "ATF7IP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIP6-1", "protein_name": "Deubiquitinase OTUD6B", "gene_name": "OTUD6A; OTUD6B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3A1-1", "protein_name": "Translocation protein SEC62", "gene_name": "SEC62", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4B3-1", "protein_name": "Trimethyllysine dioxygenase, mitochondrial", "gene_name": "TMLHE", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ00-1", "protein_name": "55 kDa erythrocyte membrane protein", "gene_name": "MPP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIW2-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIX3-1", "protein_name": "Chromatin modification-related protein MEAF6", "gene_name": "MEAF6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIP4-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHN3-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 2", "gene_name": "WIPI2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F339-1", "protein_name": "Holocytochrome c-type synthase", "gene_name": "HCCS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI43-1", "protein_name": "Snurportin-1", "gene_name": "SNUPN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI20-1", "protein_name": "Zinc transporter ZIP13", "gene_name": "SLC39A13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIL6-1", "protein_name": "Transmembrane protein 41B", "gene_name": "TMEM41B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI03-1", "protein_name": "Corepressor of RBPJ and splicing regulator", "gene_name": "CIR1; CIRSR", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIR1-1", "protein_name": "Endophilin-B1", "gene_name": "SH3GLB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHP5-1", "protein_name": "Charged multivesicular body protein 4b", "gene_name": "CHMP4B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHN9-1", "protein_name": "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial", "gene_name": "PGS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P27089-1", "protein_name": "DNA repair protein complementing XP-A cells homolog", "gene_name": "XPA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P62149-1", "protein_name": "Calmodulin", "gene_name": "CALM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q04678-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "SSRP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q1T7B8-1", "protein_name": "Centromere protein O", "gene_name": "CENPO", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F334-1", "protein_name": "Leucine-rich repeat-containing protein 59", "gene_name": "LRRC59", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F349-1", "protein_name": "Protein O-mannose kinase", "gene_name": "POMK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F363-1", "protein_name": "Protein Jumonji", "gene_name": "JARID2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F380-1", "protein_name": "GPI alpha-1,4-mannosyltransferase I, catalytic subunit", "gene_name": "PIGM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F381-1", "protein_name": "Epithelial cell adhesion molecule", "gene_name": "EPCAM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3A2-1", "protein_name": "Charged multivesicular body protein 2b", "gene_name": "CHMP2B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3F2-1", "protein_name": "Histone H2A deubiquitinase MYSM1", "gene_name": "MYSM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3F5-1", "protein_name": "G protein-coupled receptor-associated protein LMBRD2", "gene_name": "LMBRD2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3J5-1", "protein_name": "Proteasome activator complex subunit 3", "gene_name": "PSME3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3N1-1", "protein_name": "Protein-L-isoaspartate(D-aspartate) O-methyltransferase", "gene_name": "PCMT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3N9-1", "protein_name": "Protein ILRUN", "gene_name": "ILRUN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3P8-1", "protein_name": "Histone-lysine N-methyltransferase SETD1B", "gene_name": "SETD1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3T7-1", "protein_name": "CUGBP Elav-like family member 1", "gene_name": "CELF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3U9-1", "protein_name": "Sister chromatid cohesion protein PDS5 homolog B", "gene_name": "PDS5B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3V0-1", "protein_name": "Protein-lysine N-methyltransferase SMYD4", "gene_name": "SMYD4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3V3-1", "protein_name": "Sister chromatid cohesion protein PDS5 homolog A", "gene_name": "PDS5A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3W2-1", "protein_name": "Insulin-induced gene 2 protein", "gene_name": "INSIG2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3X4-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3X8-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3Z5-1", "protein_name": "DnaJ homolog subfamily B member 6", "gene_name": "DNAJB6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F408-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F416-1", "protein_name": "TIMELESS-interacting protein", "gene_name": "TIPIN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F418-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 1", "gene_name": "PSMD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F452-1", "protein_name": "Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR8", "gene_name": "MTMR8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F457-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F477-1", "protein_name": "Lipid droplet-associated hydrolase", "gene_name": "LDAH", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F486-1", "protein_name": "BAG family molecular chaperone regulator 5", "gene_name": "BAG5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F488-1", "protein_name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3", "gene_name": "MAGI3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F489-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F495-1", "protein_name": "MOB-like protein phocein", "gene_name": "MOB4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4A1-1", "protein_name": "G2/M phase-specific E3 ubiquitin-protein ligase", "gene_name": "G2E3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4A3-1", "protein_name": "Acidic leucine-rich nuclear phosphoprotein 32 family member E", "gene_name": "ANP32E", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4B2-1", "protein_name": "Switch-associated protein 70", "gene_name": "SWAP70", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4B8-1", "protein_name": "Lysosomal proton-coupled steroid conjugate and bile acid symporter SLC46A3", "gene_name": "SLC46A3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4C0-1", "protein_name": "Voltage-gated hydrogen channel 1", "gene_name": "HVCN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F4C4-1", "protein_name": "Leucine-rich repeat protein SHOC-2", "gene_name": "SHOC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5H7N8-1", "protein_name": "Zinc finger CCCH domain-containing protein 15", "gene_name": "ZC3H15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHN1-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHN4-1", "protein_name": "Protein XRP2", "gene_name": "RP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHP8-1", "protein_name": "tRNA N(3)-cytidine methyltransferase METTL2", "gene_name": "METTL2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHQ1-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHQ6-1", "protein_name": "Acyl-CoA-binding domain-containing protein 5", "gene_name": "ACBD5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHU0-1", "protein_name": "Heme transporter HRG1", "gene_name": "SLC48A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHV5-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase JMJD4", "gene_name": "JMJD4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHW7-1", "protein_name": "Protein Abitram", "gene_name": "ABITRAM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHX1-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHX6-1", "protein_name": "Solute carrier family 41 member 2", "gene_name": "SLC41A2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHX7-1", "protein_name": "NADH-cytochrome b5 reductase 2", "gene_name": "CYB5R2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHX9-1", "protein_name": "2-(3-amino-3-carboxypropyl)histidine synthase subunit 1", "gene_name": "DPH1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI05-1", "protein_name": "Lysosomal cobalamin transport escort protein LMBD1", "gene_name": "LMBRD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI08-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI13-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI16-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI22-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI34-1", "protein_name": "Peroxiredoxin-like 2A", "gene_name": "PRXL2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI66-1", "protein_name": "Putative glutathione-specific gamma-glutamylcyclotransferase 2", "gene_name": "chac2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI82-1", "protein_name": "P2Y purinoceptor 8", "gene_name": "P2RY8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIA2-1", "protein_name": "Ensconsin", "gene_name": "MAP7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIA5-1", "protein_name": "Coatomer subunit beta", "gene_name": "COPB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIB2-1", "protein_name": "Fas-binding factor 1 homolog", "gene_name": "FBF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIB8-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 5", "gene_name": "PIK3R5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIB9-1", "protein_name": "Protein arginine N-methyltransferase 7", "gene_name": "PRMT7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZID1-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 17", "gene_name": "MED17", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIE4-1", "protein_name": "Carbohydrate sulfotransferase 10", "gene_name": "CHST10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIE6-1", "protein_name": "NEDD8-activating enzyme E1 regulatory subunit", "gene_name": "NAE1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIF8-1", "protein_name": "Alpha-endosulfine", "gene_name": "ENSA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIG2-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZII6-1", "protein_name": "Protein kish-A", "gene_name": "TMEM167A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZII9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIJ9-1", "protein_name": "E3 ubiquitin-protein ligase MIB2", "gene_name": "MIB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIL2-1", "protein_name": "Vacuolar protein sorting-associated protein 29", "gene_name": "VPS29", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIN1-1", "protein_name": "Nuclear migration protein nudC", "gene_name": "NUDC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIN2-1", "protein_name": "tRNA-splicing endonuclease subunit Sen2", "gene_name": "TSEN2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIP3-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "DOHH", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIU0-1", "protein_name": "ORM1-like protein 2", "gene_name": "ORMDL2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIU8-1", "protein_name": "Katanin p80 WD40 repeat-containing subunit B1", "gene_name": "KATNB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIW7-1", "protein_name": "Cysteine protease ATG4A", "gene_name": "ATG4A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIY4-1", "protein_name": "Ribosome maturation protein SBDS", "gene_name": "SBDS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIY5-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform", "gene_name": "PPP2R2D", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZIZ2-1", "protein_name": "Protein-lysine N-trimethyltransferase SMYD5", "gene_name": "SMYD5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL84-1", "protein_name": "Sigma non-opioid intracellular receptor 1", "gene_name": "SIGMAR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM25-1", "protein_name": "Obg-like ATPase 1", "gene_name": "OLA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5R1S9-1", "protein_name": "Chromatin assembly factor 1 subunit B", "gene_name": "CHAF1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5R1T0-1", "protein_name": "Chromatin assembly factor 1 subunit A", "gene_name": "CHAF1A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM13-1", "protein_name": "Hyccin", "gene_name": "FAM126A; HYCC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKG5-1", "protein_name": "Low molecular weight phosphotyrosine protein phosphatase", "gene_name": "ACP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJJ8-1", "protein_name": "Ubiquitin-like domain-containing CTD phosphatase 1", "gene_name": "UBLCP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKV4-1", "protein_name": "Cytosolic Fe-S cluster assembly factor NUBP2", "gene_name": "NUBP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMD4-1", "protein_name": "Tripartite motif-containing protein 59", "gene_name": "TRIM59", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ87-1", "protein_name": "S-adenosylmethionine sensor upstream of mTORC1", "gene_name": "BMT2; SAMTOR", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLR2-1", "protein_name": "Zinc finger protein Pegasus", "gene_name": "IKZF5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKV9-1", "protein_name": "Syndetin", "gene_name": "VPS50", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMR3-1", "protein_name": "Protein-L-isoaspartate O-methyltransferase domain-containing protein 1", "gene_name": "PCMTD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMD6-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AFZ; H2AZ1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKT6-1", "protein_name": "EEF1A lysine methyltransferase 1", "gene_name": "EEF1AKMT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJU3-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK35-1", "protein_name": "N(6)-adenosine-methyltransferase non-catalytic subunit METTL14", "gene_name": "METTL14", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKW0-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "TRMU", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK88-1", "protein_name": "Paraspeckle component 1", "gene_name": "PSPC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJZ6-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKX6-1", "protein_name": "NEDD8-conjugating enzyme UBE2F", "gene_name": "UBE2F", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK44-1", "protein_name": "Cotranscriptional regulator ARB2A homolog", "gene_name": "ARB2A; FAM172A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMJ4-1", "protein_name": "Glycerol kinase 5", "gene_name": "GK5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZME2-1", "protein_name": "Malate dehydrogenase, cytoplasmic", "gene_name": "MDH1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKR5-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "LOC422214; NCBP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK03-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "SEC23A; SEC23B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLY8-1", "protein_name": "cAMP-regulated phosphoprotein 19", "gene_name": "ARPP19", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMP6-1", "protein_name": "AP-2 complex subunit mu", "gene_name": "AP2M1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJF1-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ02-1", "protein_name": "DBIRD complex subunit ZNF326", "gene_name": "ZNF326", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL57-1", "protein_name": "Coatomer subunit delta", "gene_name": "ARCN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q802T2-1", "protein_name": "Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase", "gene_name": "ALG6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKQ8-1", "protein_name": "ADP-ribosylation factor-like protein 8A", "gene_name": "ARL8A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLV2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKU0-1", "protein_name": "PRKR-interacting protein 1 homolog", "gene_name": "PRKRIP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJU4-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMN0-1", "protein_name": "Acidic leucine-rich nuclear phosphoprotein 32 family member B", "gene_name": "ANP32B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ01-1", "protein_name": "Alpha/beta hydrolase domain-containing protein 17B", "gene_name": "ABHD17B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ06-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit MAGT1", "gene_name": "MAGT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ07-1", "protein_name": "Centrosomal protein CCDC61", "gene_name": "CCDC61", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ08-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "YARS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ17-1", "protein_name": "Rab GTPase-activating protein 1-like", "gene_name": "RABGAP1L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ23-1", "protein_name": "Argininosuccinate synthase", "gene_name": "ASS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ24-1", "protein_name": "Centrosomal protein 20", "gene_name": "CEP20", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ25-1", "protein_name": "Vacuolar protein sorting-associated protein 51 homolog", "gene_name": "VPS51", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ27-1", "protein_name": "Protein Hook homolog 1", "gene_name": "HOOK1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ32-1", "protein_name": "SOSS complex subunit C", "gene_name": "INIP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ41-1", "protein_name": "E3 ubiquitin-protein ligase MARCHF5", "gene_name": "MARCHF5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ43-1", "protein_name": "Exocyst complex component 8", "gene_name": "EXOC8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ54-1", "protein_name": "T-complex protein 1 subunit zeta", "gene_name": "CCT6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ56-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ60-1", "protein_name": "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial", "gene_name": "HIBCH", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ74-1", "protein_name": "Iron-sulfur cluster assembly 1 homolog, mitochondrial", "gene_name": "ISCA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJA2-1", "protein_name": "Anamorsin", "gene_name": "CIAPIN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJB7-1", "protein_name": "Charged multivesicular body protein 7", "gene_name": "CHMP7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJD3-1", "protein_name": "Large subunit GTPase 1 homolog", "gene_name": "LSG1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJD7-1", "protein_name": "Protein YIPF4", "gene_name": "YIPF4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJF3-1", "protein_name": "Transcriptional adapter 2-alpha", "gene_name": "TADA2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJF6-1", "protein_name": "Probable ATP-dependent RNA helicase DDX10", "gene_name": "DDX10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJH2-1", "protein_name": "BOS complex subunit NCLN", "gene_name": "NCLN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJH5-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJI0-1", "protein_name": "Protein-tyrosine sulfotransferase 2", "gene_name": "TPST2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJI9-1", "protein_name": "Ubiquitin-associated domain-containing protein 1", "gene_name": "UBAC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJJ5-1", "protein_name": "AKT-interacting protein", "gene_name": "AKTIP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJK1-1", "protein_name": "THO complex subunit 5 homolog", "gene_name": "THOC5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJK8-1", "protein_name": "T-complex protein 1 subunit eta", "gene_name": "CCT7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJL7-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJM3-1", "protein_name": "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase", "gene_name": "NGLY1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJM9-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJQ2-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJQ7-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "SSU72", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJQ8-1", "protein_name": "Ubiquitin-associated domain-containing protein 2", "gene_name": "UBAC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJR9-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "TAF1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJU0-1", "protein_name": "Monocarboxylate transporter 9", "gene_name": "SLC16A9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJU5-1", "protein_name": "Nucleolar and spindle-associated protein 1", "gene_name": "NUSAP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJW6-1", "protein_name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "gene_name": "NKIRAS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJX0-1", "protein_name": "Lysosomal amino acid transporter 1 homolog", "gene_name": "SLC66A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJX1-1", "protein_name": "Alpha/beta hydrolase domain-containing protein 17C", "gene_name": "ABHD17C", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJX5-1", "protein_name": "MTOR-associated protein MEAK7", "gene_name": "MEAK7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJX7-1", "protein_name": "Multivesicular body subunit 12A", "gene_name": "MVB12A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJZ5-1", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "BDH1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK01-1", "protein_name": "Protein pelota homolog", "gene_name": "PELO", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK05-1", "protein_name": "Toll-interacting protein", "gene_name": "TOLLIP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK28-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK36-1", "protein_name": "Inhibitor of growth protein 3", "gene_name": "ING3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK43-1", "protein_name": "Trimeric intracellular cation channel type A", "gene_name": "TMEM38A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK47-1", "protein_name": "STE20-related kinase adapter protein alpha", "gene_name": "STRADA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK55-1", "protein_name": "MICOS complex subunit MIC27", "gene_name": "APOOL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK62-1", "protein_name": "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2", "gene_name": "ACAP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK77-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 5", "gene_name": "BLOC1S5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK82-1", "protein_name": "Metallophosphoesterase 1", "gene_name": "MPPE1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK84-1", "protein_name": "Aldo-keto reductase family 1 member A1", "gene_name": "AKR1A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKA2-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKA3-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKA4-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit J", "gene_name": "EIF3J", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKA5-1", "protein_name": "Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial", "gene_name": "MTHFD2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKB7-1", "protein_name": "Probable cation-transporting ATPase 13A4", "gene_name": "ATP13A4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKC1-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "EIF2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKD4-1", "protein_name": "N-acetylneuraminate lyase", "gene_name": "NPL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKE5-1", "protein_name": "45 kDa calcium-binding protein", "gene_name": "SDF4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKF5-1", "protein_name": "S-phase kinase-associated protein 1", "gene_name": "SKP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKF6-1", "protein_name": "7-methylguanosine phosphate-specific 5'-nucleotidase", "gene_name": "NT5C3B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKH0-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKH6-1", "protein_name": "Histone deacetylase 9", "gene_name": "hdac9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKI0-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II delta chain", "gene_name": "CAMK2D", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKI2-1", "protein_name": "2-(3-amino-3-carboxypropyl)histidine synthase subunit 2", "gene_name": "DPH2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKI6-1", "protein_name": "Glucoside xylosyltransferase 1", "gene_name": "GXYLT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKJ0-1", "protein_name": "Lipid scramblase CLPTM1L", "gene_name": "CLPTM1L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK1-1", "protein_name": "Microtubule-associated protein RP/EB family member 2", "gene_name": "MAPRE2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK3-1", "protein_name": "Anaphase-promoting complex subunit 5", "gene_name": "ANAPC5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK4-1", "protein_name": "LRP chaperone MESD", "gene_name": "mesd", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK5-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKL9-1", "protein_name": "PCNA-interacting partner", "gene_name": "PARPBP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKQ7-1", "protein_name": "Glucose-induced degradation protein 8 homolog", "gene_name": "GID8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKR4-1", "protein_name": "Rab-like protein 3", "gene_name": "RABL3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKX1-1", "protein_name": "Charged multivesicular body protein 1b", "gene_name": "CHMP1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKY2-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKY4-1", "protein_name": "Inhibitor of growth protein 4", "gene_name": "ING4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKZ4-1", "protein_name": "DnaJ homolog subfamily C member 16", "gene_name": "DNAJC16", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL00-1", "protein_name": "ER membrane protein complex subunit 1", "gene_name": "EMC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL05-1", "protein_name": "Calcium release-activated calcium channel protein 1", "gene_name": "ORAI1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL16-1", "protein_name": "WD repeat domain phosphoinositide-interacting protein 3", "gene_name": "WDR45B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL23-1", "protein_name": "Amyloid beta A4 precursor protein-binding family B member 1-interacting protein", "gene_name": "APBB1IP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL38-1", "protein_name": "SAGA-associated factor 29", "gene_name": "SGF29", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL54-1", "protein_name": "KH homology domain-containing protein 4", "gene_name": "KHDC4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL55-1", "protein_name": "Charged multivesicular body protein 6", "gene_name": "CHMP6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL95-1", "protein_name": "Terminal nucleotidyltransferase 5C", "gene_name": "TENT5C", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL98-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC1", "gene_name": "POLR3A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLA5-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit E", "gene_name": "EIF3E", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLA9-1", "protein_name": "Transmembrane protein 263", "gene_name": "TMEM263", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLD7-1", "protein_name": "Vacuolar protein sorting-associated protein 53 homolog", "gene_name": "VPS53", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLE6-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit H", "gene_name": "EIF3H", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLE9-1", "protein_name": "NEDD4-binding protein 1", "gene_name": "N4BP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLF0-1", "protein_name": "Hsc70-interacting protein", "gene_name": "ST13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLG1-1", "protein_name": "Ras-related protein Rab-18", "gene_name": "RAB18", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLG3-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLG4-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLG8-1", "protein_name": "Transmembrane anterior posterior transformation protein 1 homolog", "gene_name": "TAPT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLG9-1", "protein_name": "GATOR2 complex protein WDR59", "gene_name": "WDR59", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLH4-1", "protein_name": "Transmembrane protein 230", "gene_name": "TMEM230", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK1-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK2-1", "protein_name": "UBX domain-containing protein 2B", "gene_name": "UBXN2B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK4-1", "protein_name": "Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1", "gene_name": "GBGT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK6-1", "protein_name": "Kinesin-like protein KIF18B", "gene_name": "KIF18B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLL5-1", "protein_name": "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial", "gene_name": "COQ5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLL6-1", "protein_name": "Methylsterol monooxygenase 1", "gene_name": "MSMO1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLL7-1", "protein_name": "WD repeat-containing protein 91", "gene_name": "WDR91", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLM2-1", "protein_name": "Lariat debranching enzyme", "gene_name": "DBR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLN5-1", "protein_name": "TAR DNA-binding protein 43", "gene_name": "TARDBP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLN8-1", "protein_name": "ATP-dependent RNA helicase DDX55", "gene_name": "DDX55", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLP2-1", "protein_name": "Methylthioribulose-1-phosphate dehydratase", "gene_name": "APIP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLQ4-1", "protein_name": "Iron-responsive element-binding protein 2", "gene_name": "IREB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLQ6-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLR1-1", "protein_name": "Protein wntless homolog", "gene_name": "WLS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLR4-1", "protein_name": "Epithelial splicing regulatory protein 2", "gene_name": "ESRP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLS3-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLY0-1", "protein_name": "Phosphorylated adapter RNA export protein", "gene_name": "PHAX", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLY5-1", "protein_name": "Pleckstrin homology domain-containing family F member 2", "gene_name": "PLEKHF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM11-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM16-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM19-1", "protein_name": "Nuclear cap-binding protein subunit 3", "gene_name": "NCBP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM20-1", "protein_name": "RecQ-mediated genome instability protein 2", "gene_name": "RMI2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM30-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1A", "gene_name": "RPRD1A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM35-1", "protein_name": "Twinfilin-2", "gene_name": "TWF2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM45-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 48", "gene_name": "USP48", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM55-1", "protein_name": "Protein fem-1 homolog B", "gene_name": "FEM1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM60-1", "protein_name": "Cell cycle progression protein 1", "gene_name": "CCPG1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM65-1", "protein_name": "Phosphatidylserine synthase 1", "gene_name": "PTDSS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM72-1", "protein_name": "Fatty acyl-CoA reductase 1", "gene_name": "FAR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM73-1", "protein_name": "Mitochondrial Rho GTPase 1", "gene_name": "RHOT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM83-1", "protein_name": "Mitochondrial Rho GTPase 2", "gene_name": "RHOT2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM88-1", "protein_name": "Putative Polycomb group protein ASXL2", "gene_name": "ASXL2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM96-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMA6-1", "protein_name": "Glutamine-dependent NAD(+) synthetase", "gene_name": "NADSYN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZME8-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMG0-1", "protein_name": "D-dopachrome decarboxylase", "gene_name": "DDT", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMH6-1", "protein_name": "Protein-L-histidine N-pros-methyltransferase", "gene_name": "METTL9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML1-1", "protein_name": "Importin subunit alpha-5", "gene_name": "KPNA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML3-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMN3-1", "protein_name": "Prohibitin-2", "gene_name": "PHB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMP7-1", "protein_name": "AP-3 complex subunit mu-1", "gene_name": "AP3M1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMT7-1", "protein_name": "AarF domain-containing protein kinase 1", "gene_name": "ADCK1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMT9-1", "protein_name": "Insulin-induced gene 1 protein", "gene_name": "INSIG1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMU0-1", "protein_name": "Small ribosomal subunit protein uS7m", "gene_name": "MRPS7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMV7-1", "protein_name": "WD repeat-containing protein 82", "gene_name": "WDR82", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMW0-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZMW6-1", "protein_name": "Stabilizer of axonemal microtubules 6", "gene_name": "SAXO6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q76LT9-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit TMEM258", "gene_name": "TMEM258", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q8JFP1-1", "protein_name": "Eukaryotic initiation factor 4A-II", "gene_name": "EIF4A2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q91955-1", "protein_name": "Myotrophin", "gene_name": "MTPN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3C1-1", "protein_name": "Sphingolipid delta(4)-desaturase DES1", "gene_name": "DEGS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P18359-1", "protein_name": "Destrin", "gene_name": "DSTN", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5F3L7", "url": "https://www.uniprot.org/uniprotkb/Q5F3L7" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15642098", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 765 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transdifferentiation of the retina into pigmented cells in ocular retardation mice defines a new function of the homeodomain gene Chx10.", "journal": "Development", "date": "2004", "authors": "Rowan Sheldon, Chen C-M Amy, Young Tracy L, Fisher David E, Cepko Constance L", "reference": { "type": "PubMed", "id": "15459106", "url": "https://pubmed.ncbi.nlm.nih.gov/15459106" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5XFQ6-1", "protein_name": "Transcription factor EC", "gene_name": "TFEC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9WTW4-1", "protein_name": "Transcription factor EC", "gene_name": "Tfec", "tax_name": "Mouse" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5XFQ6", "url": "https://www.uniprot.org/uniprotkb/Q5XFQ6" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15459106", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of chicken transmembrane channel-like (TMC) genes: expression analysis in the cochlea.", "journal": "Neuroscience", "date": "2005", "authors": "Mutai H, Mann S, Heller S", "reference": { "type": "PubMed", "id": "15857715", "url": "https://pubmed.ncbi.nlm.nih.gov/15857715" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5YCC5-1", "protein_name": "Transmembrane channel-like protein 7", "gene_name": "Tmc7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5YCC7-1", "protein_name": "Transmembrane channel-like protein 3", "gene_name": "Tmc3", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5YCC5", "url": "https://www.uniprot.org/uniprotkb/Q5YCC5" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15857715", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of nephric duct specification in the avian embryo.", "journal": "Development (Cambridge, England)", "date": "2012-11", "authors": "Attia Lital, Yelin Ronit, Schultheiss Thomas M", "reference": { "type": "PubMed", "id": "23034630", "url": "https://pubmed.ncbi.nlm.nih.gov/23034630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5YLH5-1", "protein_name": "Homeobox protein Hox-A6", "gene_name": "HOXA6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P14840-1", "protein_name": "Homeobox protein Hox-B4", "gene_name": "HOXB4", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5YLH5", "url": "https://www.uniprot.org/uniprotkb/Q5YLH5" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.23034630", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinoic acid enhances Erk phosphorylation in the chick retina.", "journal": "Neuroscience letters", "date": "2007-10-09", "authors": "Kampmann Eric, Mey J\u00f6rg", "reference": { "type": "PubMed", "id": "17881122", "url": "https://pubmed.ncbi.nlm.nih.gov/17881122" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZIP2-1", "protein_name": "Ragulator complex protein LAMTOR3", "gene_name": "LAMTOR3", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZIP2", "url": "https://www.uniprot.org/uniprotkb/Q5ZIP2" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.17881122", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.", "journal": "Nature", "date": "2004", "authors": "", "reference": { "type": "PubMed", "id": "15592404", "url": "https://pubmed.ncbi.nlm.nih.gov/15592404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZJV4-1", "protein_name": "Mini-chromosome maintenance complex-binding protein", "gene_name": "MCMBP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK09-1", "protein_name": "Protein Hikeshi", "gene_name": "HIKESHI", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1P3Y5-1", "protein_name": "Cilia- and flagella-associated protein 144", "gene_name": "CFAP144; FAM183A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZB02-1", "protein_name": "Mechanosensitive cation channel TMEM63B", "gene_name": "TMEM63B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5P556-1", "protein_name": "Disheveled-associated activator of morphogenesis 2", "gene_name": "DAAM2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEI8-1", "protein_name": "RAD51-associated protein 1", "gene_name": "RAD51AP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C762-1", "protein_name": "D-aminoacyl-tRNA deacylase 2", "gene_name": "DTD2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NLH9-1", "protein_name": "Inosine triphosphate pyrophosphatase", "gene_name": "ITPA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1N9S8-1", "protein_name": "Protein-L-histidine N-pros-methyltransferase CARNMT1", "gene_name": "CARNMT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BR24-1", "protein_name": "Ferroptosis suppressor protein 1", "gene_name": "AIFM2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A7M7B9-1", "protein_name": "Endonuclease III-like protein 1", "gene_name": "NTHL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A7Y7W2-1", "protein_name": "POU domain, class 5, transcription factor 3", "gene_name": "POU5F3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A7Y7W3-1", "protein_name": "Homeobox protein NANOG", "gene_name": "NANOG", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "B4ER10-1", "protein_name": "Interferon lambda-3", "gene_name": "IFNL3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PJB7-1", "protein_name": "KICSTOR complex protein kaptin", "gene_name": "KPTN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BUG7-1", "protein_name": "Protein SPT2 homolog", "gene_name": "SPTY2D1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q04205-1", "protein_name": "Tensin-1", "gene_name": "TNS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90935-1", "protein_name": "Neuroserpin", "gene_name": "SERPINI1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P40618-1", "protein_name": "High mobility group protein B3", "gene_name": "HMGB3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NY98-1", "protein_name": "Cell adhesion molecule DSCAM", "gene_name": "DSCAM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q91029-1", "protein_name": "Protein Wnt-1", "gene_name": "WNT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P04268-1", "protein_name": "Tropomyosin alpha-1 chain", "gene_name": "TPM1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0CB50-1", "protein_name": "Peroxiredoxin-1", "gene_name": "PRDX1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "B9U3F2-1", "protein_name": "Protein dispatched homolog 3", "gene_name": "DISP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C8P7-1", "protein_name": "Cell adhesion molecule DSCAML1", "gene_name": "DSCAML1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NPQ2-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "MINPP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NWE3-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P02542-1", "protein_name": "Desmin", "gene_name": "DES", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q1G7G9-1", "protein_name": "TALPID3 protein", "gene_name": "TALPID3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5NVS8-1", "protein_name": "E3 ubiquitin-protein ligase MSL2", "gene_name": "MSL2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZI58-1", "protein_name": "Atos homolog protein A", "gene_name": "ATOSA; FAM214A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKP4-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "TRAPPC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BRE2-1", "protein_name": "NAD-dependent protein deacylase sirtuin-5, mitochondrial", "gene_name": "SIRT5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BTE1-1", "protein_name": "Wee1-like protein kinase 2", "gene_name": "WEE2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BYA3-1", "protein_name": "Phosphatidylserine synthase 2", "gene_name": "PTDSS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BYJ2-1", "protein_name": "DNA mismatch repair protein Msh6", "gene_name": "MSH6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C231-1", "protein_name": "E3 ubiquitin-protein ligase listerin", "gene_name": "LTN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C2U2-1", "protein_name": "Telomere-associated protein RIF1", "gene_name": "RIF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C2W7-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C5V0-1", "protein_name": "N-lysine methyltransferase SMYD2", "gene_name": "SMYD2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NBT0-1", "protein_name": "Serine/threonine-protein kinase 10", "gene_name": "STK10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NTD6-1", "protein_name": "Activating signal cointegrator 1 complex subunit 3", "gene_name": "ascc3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NW29-1", "protein_name": "Tyrosyl-DNA phosphodiesterase 2", "gene_name": "TDP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML9-1", "protein_name": "Actin-histidine N-methyltransferase", "gene_name": "SETD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9PTD5-1", "protein_name": "Mitochondrial fission regulator 1", "gene_name": "MTFR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "U3NEE3-1", "protein_name": "Carnosine N-methyltransferase 2", "gene_name": "LOC771456", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NXU8-1", "protein_name": "Mitochondrial sodium/calcium exchanger protein", "gene_name": "SLC8B1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1P065-1", "protein_name": "FERM, ARHGEF and pleckstrin domain-containing protein 1", "gene_name": "FARP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1P4W9-1", "protein_name": "Cilia- and flagella-associated protein 65", "gene_name": "CFAP65", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "O57425-1", "protein_name": "Hyaluronan synthase 3", "gene_name": "HAS3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P01295-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P09531-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0CB05-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0CF65-1", "protein_name": "Protein cereblon", "gene_name": "CRBN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0DJJ2-1", "protein_name": "Astacin-like metalloendopeptidase", "gene_name": "ASTL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZHS0-1", "protein_name": "BRCA1-A complex subunit Abraxas 1", "gene_name": "ABRAXAS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJL4-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKM1-1", "protein_name": "pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3", "gene_name": "FTSJ3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKY0-1", "protein_name": "Endosomal/lysosomal proton channel TMEM175", "gene_name": "TMEM175", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q98SH2-1", "protein_name": "Plasma membrane calcium-transporting ATPase 1", "gene_name": "ATP2B1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q98TA4-1", "protein_name": "Mannose-binding protein", "gene_name": "MBL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9PT84-1", "protein_name": "Voltage-gated inwardly rectifying potassium channel KCNH6", "gene_name": "KCNH6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9PTQ7-1", "protein_name": "Doublesex- and mab-3-related transcription factor 1", "gene_name": "DMRT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1N9Y5-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PPP7-1", "protein_name": "Caspase-6", "gene_name": "CASP6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PRR9-1", "protein_name": "Fanconi anemia group M protein", "gene_name": "FANCM", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PUP4-1", "protein_name": "Reversion-inducing cysteine-rich protein with Kazal motifs", "gene_name": "RECK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK92-1", "protein_name": "Spastin", "gene_name": "SPAST", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2TTB3-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "PRIMPOL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C656-1", "protein_name": "E3 ubiquitin-protein ligase HACE1", "gene_name": "HACE1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NVK6-1", "protein_name": "Transmembrane protein 237", "gene_name": "TMEM237", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YY16-1", "protein_name": "Forkhead box protein I3", "gene_name": "FOXI3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZLT4-1", "protein_name": "Tetraspanin-18", "gene_name": "TSPAN18", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NEA7-1", "protein_name": "Diencephalon/mesencephalon homeobox protein 1", "gene_name": "DMBX1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BVR9-1", "protein_name": "Small RNA 2'-O-methyltransferase", "gene_name": "HENMT1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BW58-1", "protein_name": "Mitochondria-eating protein", "gene_name": "SPATA18", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BX29-1", "protein_name": "Neuromedin-U receptor 2", "gene_name": "NMUR2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BXS0-1", "protein_name": "Swi5-dependent recombination DNA repair protein 1 homolog", "gene_name": "SFR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BZ85-1", "protein_name": "Meiosis regulator and mRNA stability factor 1", "gene_name": "MARF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BZR9-1", "protein_name": "Tectonin beta-propeller repeat-containing protein 1", "gene_name": "TECPR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C065-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C1R4-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 47", "gene_name": "USP47", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C213-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 37", "gene_name": "USP37", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C2Q8-1", "protein_name": "APC membrane recruitment protein 2", "gene_name": "AMER2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C2V1-1", "protein_name": "Lethal(3)malignant brain tumor-like protein 1", "gene_name": "L3MBTL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C3S7-1", "protein_name": "Tudor domain-containing protein 7", "gene_name": "TDRD7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C6F0-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C6Q1-1", "protein_name": "Pachytene checkpoint protein 2 homolog", "gene_name": "TRIP13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C760-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C7T6-1", "protein_name": "tRNA wybutosine-synthesizing protein 5", "gene_name": "TYW5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1N8V3-1", "protein_name": "Phosphatase and actin regulator 4", "gene_name": "PHACTR4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NB38-1", "protein_name": "Ethylmalonyl-CoA decarboxylase", "gene_name": "ECHDC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NNL1-1", "protein_name": "Transmembrane protein 231", "gene_name": "TMEM231", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NZI4-1", "protein_name": "Protein-glucosylgalactosylhydroxylysine glucosidase", "gene_name": "PGGHG", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NZP5-1", "protein_name": "TLC domain-containing protein 1", "gene_name": "TLCD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "O73590-1", "protein_name": "Zinc finger homeobox protein 4", "gene_name": "ZFHX4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "O93526-1", "protein_name": "Fibrinogen-like protein 1-like protein", "gene_name": "", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P02611-1", "protein_name": "Myosin regulatory light chain 2B, cardiac muscle isoform", "gene_name": "", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0C7A1-1", "protein_name": "Cytosolic endo-beta-N-acetylglucosaminidase", "gene_name": "ENGASE", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BRC3-1", "protein_name": "NELL2-interacting cell ontogeny regulator 1", "gene_name": "NICOL1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BWM5-1", "protein_name": "FUN14 domain-containing protein 1", "gene_name": "FUNDC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BY51-1", "protein_name": "Transmembrane protein 17", "gene_name": "TMEM17", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C2P3-1", "protein_name": "Heat shock 70 kDa protein 14", "gene_name": "HSPA14", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C2Z0-1", "protein_name": "Protein MMS22-like", "gene_name": "MMS22L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q0ZM14-1", "protein_name": "Protocadherin-15", "gene_name": "PCDH15; Pcdh15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P11722-1", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P32760-1", "protein_name": "Pleiotrophin", "gene_name": "PTN", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BY77-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 13", "gene_name": "USP13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJL9-1", "protein_name": "Deoxynucleoside triphosphate triphosphohydrolase SAMHD1", "gene_name": "SAMHD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BSI0-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP3", "gene_name": "PARP3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BSW7-1", "protein_name": "Centromere protein S", "gene_name": "CENPS", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BTG2-1", "protein_name": "Leiomodin-2", "gene_name": "LMOD2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C1L6-1", "protein_name": "Ectonucleoside triphosphate diphosphohydrolase 5", "gene_name": "ENTPD5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C2I2-1", "protein_name": "Serine/threonine-protein kinase greatwall", "gene_name": "MASTL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C3P4-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C3U7-1", "protein_name": "Lysyl oxidase homolog 2", "gene_name": "LOXL2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NBL0-1", "protein_name": "Mucin-6", "gene_name": "MUC6", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NCD6-1", "protein_name": "Sodium-dependent lysophosphatidylcholine symporter 1", "gene_name": "MFSD2A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1ND48-1", "protein_name": "F-box DNA helicase 1", "gene_name": "FBH1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NHE9-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 12", "gene_name": "KCNJ12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NPG5-1", "protein_name": "Centromere protein T", "gene_name": "CENPT", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NQJ3-1", "protein_name": "Mismatch repair endonuclease PMS2", "gene_name": "PMS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NSM7-1", "protein_name": "Ovocleidin-116", "gene_name": "", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NUK7-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "gene_name": "FLRT3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NV61-1", "protein_name": "Caspase-7", "gene_name": "CASP7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "I0IUP3-1", "protein_name": "DNA helicase MCM8", "gene_name": "MCM8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "I0IUP4-1", "protein_name": "DNA helicase MCM9", "gene_name": "MCM9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "O57579-1", "protein_name": "Aminopeptidase Ey", "gene_name": "ANPEP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P00698-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P02460-1", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P02467-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0DMQ6-1", "protein_name": "Sorbitol dehydrogenase", "gene_name": "SORD", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P10184-1", "protein_name": "Ovoinhibitor", "gene_name": "SPINK5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P48434-1", "protein_name": "Transcription factor SOX-9", "gene_name": "SOX9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q04861-1", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "gene_name": "NFKB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q04982-2", "protein_name": "Serine/threonine-protein kinase B-raf", "gene_name": "BRAF", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q10751-1", "protein_name": "Angiotensin-converting enzyme", "gene_name": "ACE", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q2AB83-1", "protein_name": "Taste receptor type 2 member 40", "gene_name": "TAS2R40", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJM7-1", "protein_name": "Deoxycytidine kinase 2", "gene_name": "DCK2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKG3-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "DNA2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9DF58-1", "protein_name": "Scaffold protein ILK", "gene_name": "ILK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9YH06-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90674-1", "protein_name": "Lutropin-choriogonadotropic hormone receptor", "gene_name": "LHCGR", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90584-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P34963-1", "protein_name": "Neuromedin-U", "gene_name": "NMU", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P51971-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "EIF1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P57788-1", "protein_name": "Monocarboxylate transporter 4", "gene_name": "SLC16A3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P84407-1", "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q0V8S9-1", "protein_name": "Contactin-associated protein-like 5", "gene_name": "CNTNAP5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F3W2-1", "protein_name": "Insulin-induced gene 2 protein", "gene_name": "INSIG2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C1U1-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90632-1", "protein_name": "Monocarboxylate transporter 3", "gene_name": "SLC16A8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM13-1", "protein_name": "Hyccin", "gene_name": "FAM126A; HYCC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJ02-1", "protein_name": "DBIRD complex subunit ZNF326", "gene_name": "ZNF326", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJR9-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "TAF1B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJX0-1", "protein_name": "Lysosomal amino acid transporter 1 homolog", "gene_name": "SLC66A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZK28-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKL9-1", "protein_name": "PCNA-interacting partner", "gene_name": "PARPBP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZM65-1", "protein_name": "Phosphatidylserine synthase 1", "gene_name": "PTDSS1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90577-1", "protein_name": "Sarcalumenin", "gene_name": "SRL", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5NY17-1", "protein_name": "Transmembrane protein 182", "gene_name": "TMEM182", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PXA5-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1ABE9-1", "protein_name": "D-serine dehydratase", "gene_name": "CHDSD; DSD", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0FKN5-1", "protein_name": "Prestin", "gene_name": "SLC26A5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C7U0-1", "protein_name": "Stimulator of interferon genes protein", "gene_name": "STING1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NJ67-1", "protein_name": "Proton-coupled folate transporter", "gene_name": "SLC46A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q8AYD0-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YZK7-1", "protein_name": "Neuromedin-U receptor 1", "gene_name": "NMUR1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZJV4", "url": "https://www.uniprot.org/uniprotkb/Q5ZJV4" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15592404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 169 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "FAM60A promotes osteosarcoma development and progression.", "journal": "Cancer medicine", "date": "2023-08", "authors": "Sun Yu, Man Yu-Nan, Cheng Jin-Hui, Li Jing-Tang, Liu Ya-Yun", "reference": { "type": "PubMed", "id": "37439040", "url": "https://pubmed.ncbi.nlm.nih.gov/37439040" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZJV7-1", "protein_name": "SIN3-HDAC complex-associated factor", "gene_name": "SINHCAF", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZJV7", "url": "https://www.uniprot.org/uniprotkb/Q5ZJV7" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.37439040", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cDNA cloning of the chicken DDB1 gene encoding the p127 subunit of damaged DNA-binding protein.", "journal": "Genes & genetic systems", "date": "2003-04", "authors": "Fu DongTao, Wakasugi Mitsuo, Ishigaki Yasuhito, Nikaido Osamu, Matsunaga Tsukasa", "reference": { "type": "PubMed", "id": "12773817", "url": "https://pubmed.ncbi.nlm.nih.gov/12773817" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZKQ6-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "POLE2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P62985-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5QJC4-1", "protein_name": "DNA cross-link repair 1A protein", "gene_name": "DCLRE1A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJJ2-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK7-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q805F9-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9DEA3-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P53033-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0CG62-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P79781-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P27089-1", "protein_name": "DNA repair protein complementing XP-A cells homolog", "gene_name": "XPA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKH0-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZKQ6", "url": "https://www.uniprot.org/uniprotkb/Q5ZKQ6" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.12773817", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of human XPAC gene homologs from chicken, Xenopus laevis and Drosophila melanogaster.", "journal": "Biochemical and biophysical research communications", "date": "1991-12-31", "authors": "Shimamoto T, Kohno K, Tanaka K, Okada Y", "reference": { "type": "PubMed", "id": "1764072", "url": "https://pubmed.ncbi.nlm.nih.gov/1764072" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZKQ6-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "POLE2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P28518-1", "protein_name": "DNA repair protein complementing XP-A cells homolog", "gene_name": "Xpac", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P62985-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5QJC4-1", "protein_name": "DNA cross-link repair 1A protein", "gene_name": "DCLRE1A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJJ2-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKK7-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q805F9-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9DEA3-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P53033-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P0CG62-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P79781-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P27089-1", "protein_name": "DNA repair protein complementing XP-A cells homolog", "gene_name": "XPA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKH0-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZKQ6", "url": "https://www.uniprot.org/uniprotkb/Q5ZKQ6" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.1764072", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Developmental regulation of muscleblind-like (MBNL) gene expression in the chicken embryo retina.", "journal": "Developmental dynamics : an official publication of the American Association of Anatomists", "date": "2008-01", "authors": "Huang Hu, Wahlin Karl J, McNally Minda, Irving Natasha D, Adler Ruben", "reference": { "type": "PubMed", "id": "18095352", "url": "https://pubmed.ncbi.nlm.nih.gov/18095352" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZKW9-1", "protein_name": "Muscleblind-like protein 1", "gene_name": "MBNL1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZKW9", "url": "https://www.uniprot.org/uniprotkb/Q5ZKW9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.18095352", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Muscleblind-like 1 is a negative regulator of TGF-beta-dependent epithelial-mesenchymal transition of atrioventricular canal endocardial cells.", "journal": "Developmental dynamics : an official publication of the American Association of Anatomists", "date": "2009-12", "authors": "Vajda Natalie A, Brimacombe Kyle R, LeMasters Kathryn E, Ladd Andrea N", "reference": { "type": "PubMed", "id": "19890912", "url": "https://pubmed.ncbi.nlm.nih.gov/19890912" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZKW9-1", "protein_name": "Muscleblind-like protein 1", "gene_name": "MBNL1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZKW9", "url": "https://www.uniprot.org/uniprotkb/Q5ZKW9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.19890912", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conserved developmental alternative splicing of muscleblind-like (MBNL) transcripts regulates MBNL localization and activity.", "journal": "RNA biology", "date": "2010", "authors": "Terenzi Fulvia, Ladd Andrea N", "reference": { "type": "PubMed", "id": "20009516", "url": "https://pubmed.ncbi.nlm.nih.gov/20009516" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZKW9-1", "protein_name": "Muscleblind-like protein 1", "gene_name": "MBNL1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZKW9", "url": "https://www.uniprot.org/uniprotkb/Q5ZKW9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.20009516", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of muscleblind-like 1 promotes invasive mesenchyme formation in endocardial cushions by stimulating autocrine TGF\u03b23.", "journal": "BMC developmental biology", "date": "2012-08-06", "authors": "LeMasters Kathryn E, Blech-Hermoni Yotam, Stillwagon Samantha J, Vajda Natalie A, Ladd Andrea N", "reference": { "type": "PubMed", "id": "22866814", "url": "https://pubmed.ncbi.nlm.nih.gov/22866814" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZKW9-1", "protein_name": "Muscleblind-like protein 1", "gene_name": "MBNL1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZKW9", "url": "https://www.uniprot.org/uniprotkb/Q5ZKW9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.22866814", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mass spectral data for 64 eluted peptides and structural modeling define peptide binding preferences for class I alleles in two chicken MHC-B haplotypes associated with opposite responses to Marek's disease.", "journal": "Immunogenetics", "date": "2008-09", "authors": "Sherman Mark A, Goto Ronald M, Moore Roger E, Hunt Henry D, Lee Terry D, Miller Marcia M", "reference": { "type": "PubMed", "id": "18612635", "url": "https://pubmed.ncbi.nlm.nih.gov/18612635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZLC8-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C", "gene_name": "ANKRD52", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLK7-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P47836-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "RPS4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PD32-1", "protein_name": "RNA helicase", "gene_name": "DDX17", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NI66-1", "protein_name": "Protein zer-1 homolog", "gene_name": "ZER1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1L1RXQ1-1", "protein_name": "Cyclosome subunit 8", "gene_name": "CDC23", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5F361-1", "protein_name": "TBC domain-containing protein kinase-like protein", "gene_name": "TBCK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZML9-1", "protein_name": "Actin-histidine N-methyltransferase", "gene_name": "SETD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P08070-1", "protein_name": "Tubulin alpha-2 chain", "gene_name": "", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P21868-1", "protein_name": "Casein kinase II subunit alpha", "gene_name": "CSNK2A1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZJH9-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9PSX7-1", "protein_name": "Rho-related GTP-binding protein RhoC", "gene_name": "RHOC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9PUU8-1", "protein_name": "Leukocyte cell-derived chemotaxin 1", "gene_name": "CNMD", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1P337-1", "protein_name": "Sorting nexin", "gene_name": "SNX5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BTL9-1", "protein_name": "60S ribosomal export protein NMD3", "gene_name": "NMD3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BXP4-1", "protein_name": "Ribonucleoside-diphosphate reductase subunit M2", "gene_name": "RRM2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BQK7-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BT66-1", "protein_name": "TATA-box binding protein associated factor 15", "gene_name": "TAF15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C0R9-1", "protein_name": "Endoplasmic reticulum membrane protein complex subunit 7", "gene_name": "EMC7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P13127-1", "protein_name": "F-actin-capping protein subunit alpha-1", "gene_name": "CAPZA1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P14732-1", "protein_name": "Lamin-B2", "gene_name": "LMNB2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P21611-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P60706-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZKG3-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "DNA2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZL95-1", "protein_name": "Terminal nucleotidyltransferase 5C", "gene_name": "TENT5C", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ZLQ6-1", "protein_name": "14-3-3 protein beta/alpha", "gene_name": "YWHAB", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZLC8", "url": "https://www.uniprot.org/uniprotkb/Q5ZLC8" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.18612635", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding.", "journal": "eLife", "date": "2015-04-10", "authors": "Chappell Paul, Meziane El Kahina, Harrison Michael, Magiera \u0141ukasz, Hermann Clemens, Mears Laura, Wrobel Antony G, Durant Charlotte, Nielsen Lise Lotte, Buus S\u00f8ren, Ternette Nicola, Mwangi William, Butter Colin, Nair Venugopal, Ahyee Trudy, Duggleby Richard, Madrigal Alejandro, Roversi Pietro, Lea Susan M, Kaufman Jim", "reference": { "type": "PubMed", "id": "25860507", "url": "https://pubmed.ncbi.nlm.nih.gov/25860507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5ZMD1-1", "protein_name": "14-3-3 protein theta", "gene_name": "YWHAQ", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P01994-1", "protein_name": "Hemoglobin subunit alpha-A", "gene_name": "HBAA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P09207-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9PSX7-1", "protein_name": "Rho-related GTP-binding protein RhoC", "gene_name": "RHOC", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P21611-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P62801-1", "protein_name": "Histone H4", "gene_name": "H4-III; H4-II; H4-IV; H4-I; H4-VII; H4-VI; H4-V", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q06066-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q2IAL6-1", "protein_name": "Cathelicidin-3", "gene_name": "CATH3; CATHL3", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q5ZMD1", "url": "https://www.uniprot.org/uniprotkb/Q5ZMD1" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.25860507", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Yeast two-hybrid screens imply that GGNBP1, GGNBP2 and OAZ3 are potential interaction partners of testicular germ cell-specific protein GGN1.", "journal": "FEBS Lett.", "date": "2005", "authors": "Zhang J, Wang Y, Zhou Y, Cao Z, Huang P, Lu B", "reference": { "type": "PubMed", "id": "15642376", "url": "https://pubmed.ncbi.nlm.nih.gov/15642376" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6GVH4-1", "protein_name": "Gametogenetin-binding protein 2", "gene_name": "GGNBP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q6K1E7-1", "protein_name": "Gametogenetin-binding protein 1", "gene_name": "Ggnbp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GVH5-1", "protein_name": "Gametogenetin-binding protein 2", "gene_name": "Ggnbp2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R109-1", "protein_name": "Ornithine decarboxylase antizyme 3", "gene_name": "Oaz3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SV77-1", "protein_name": "Gametogenetin-binding protein 2", "gene_name": "Ggnbp2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80WJ1-1", "protein_name": "Gametogenetin", "gene_name": "Ggn", "tax_name": "Mouse" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q6GVH4", "url": "https://www.uniprot.org/uniprotkb/Q6GVH4" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15642376", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct steps of neural induction revealed by Asterix, Obelix and TrkC, genes induced by different signals from the organizer.", "journal": "PLoS ONE", "date": "2011", "authors": "Pinho Sonia, Simonsson Pamela R, Trevers Katherine E, Stower Matthew J, Sherlock William T, Khan Mohsin, Streit Andrea, Sheng Guojun, Stern Claudio D", "reference": { "type": "PubMed", "id": "21559472", "url": "https://pubmed.ncbi.nlm.nih.gov/21559472" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6K1L7-1", "protein_name": "Probable RNA-binding protein EIF1AD", "gene_name": "eif1ad", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F8RT80-1", "protein_name": "PAT complex subunit Asterix", "gene_name": "WDR83OS", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q6K1L7", "url": "https://www.uniprot.org/uniprotkb/Q6K1L7" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.21559472", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gradients and forward spreading of vertebrate Hox gene expression detected using a Hox/lacZ transgene.", "journal": "Dev. Dyn.", "date": "2001", "authors": "Gaunt S J", "reference": { "type": "PubMed", "id": "11357191", "url": "https://pubmed.ncbi.nlm.nih.gov/11357191" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90VZ9-1", "protein_name": "Homeobox protein Hox-A7", "gene_name": "HOXA7", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90VZ9", "url": "https://www.uniprot.org/uniprotkb/Q90VZ9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11357191", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Additional enhancer copies, with intact cdx binding sites, anteriorize Hoxa-7/lacZ expression in mouse embryos: evidence in keeping with an instructional cdx gradient.", "journal": "The International journal of developmental biology", "date": "2004-09", "authors": "Gaunt Stephen J, Cockley Adam, Drage Deborah", "reference": { "type": "PubMed", "id": "15470633", "url": "https://pubmed.ncbi.nlm.nih.gov/15470633" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90VZ9-1", "protein_name": "Homeobox protein Hox-A7", "gene_name": "HOXA7", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90VZ9", "url": "https://www.uniprot.org/uniprotkb/Q90VZ9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15470633", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HOX gene analysis of endothelial cell differentiation in human bone marrow-derived mesenchymal stem cells.", "journal": "Molecular biology reports", "date": "2009", "authors": "Chung N, Jee BK, Chae SW, Jeon YW, Lee KH, Rha HK", "reference": { "type": "PubMed", "id": "17972163", "url": "https://pubmed.ncbi.nlm.nih.gov/17972163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90VZ9-1", "protein_name": "Homeobox protein Hox-A7", "gene_name": "HOXA7", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90VZ9", "url": "https://www.uniprot.org/uniprotkb/Q90VZ9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.17972163", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HOX gene expression in phenotypic and genotypic subgroups and low HOXA gene expression as an adverse prognostic factor in pediatric ALL.", "journal": "Pediatric blood & cancer", "date": "2010-12-01", "authors": "Starkova Julia, Zamostna Blanka, Mejstrikova Ester, Krejci Roman, Drabkin Harry A, Trka Jan", "reference": { "type": "PubMed", "id": "20672366", "url": "https://pubmed.ncbi.nlm.nih.gov/20672366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90VZ9-1", "protein_name": "Homeobox protein Hox-A7", "gene_name": "HOXA7", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90VZ9", "url": "https://www.uniprot.org/uniprotkb/Q90VZ9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.20672366", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic cloning, structure, and regulatory elements of the 1 alpha, 25(OH)2D3 down-regulated gene for cyclic AMP-dependent protein kinase inhibitor.", "journal": "Biochim. Biophys. Acta", "date": "1999", "authors": "Rowland-Goldsmith M A, Holmquist B, Henry H L", "reference": { "type": "PubMed", "id": "10524218", "url": "https://pubmed.ncbi.nlm.nih.gov/10524218" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90641-1", "protein_name": "cAMP-dependent protein kinase inhibitor alpha", "gene_name": "PKIA", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90641", "url": "https://www.uniprot.org/uniprotkb/Q90641" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.10524218", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and sequencing of the cDNA encoding the avian kidney cAMP-dependent protein kinase inhibitor protein.", "journal": "Gene", "date": "1995", "authors": "Marchetto G S, Henry H L", "reference": { "type": "PubMed", "id": "7607559", "url": "https://pubmed.ncbi.nlm.nih.gov/7607559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90641-1", "protein_name": "cAMP-dependent protein kinase inhibitor alpha", "gene_name": "PKIA", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90641", "url": "https://www.uniprot.org/uniprotkb/Q90641" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.7607559", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MUSTN1 mRNA Abundance and Protein Localization is Greatest in Muscle Tissues of Chinese Meat-Quality Chickens.", "journal": "Int. J. Mol. Sci.", "date": "2013", "authors": "Li Juan, Chen Yang, Wang Ya-Gang, Zhao Xiao-Ling, Gilbert Elizabeth Ruth, Liu Yi-Ping, Wang Yan, Hu Yao-Dong, Zhu Qing", "reference": { "type": "PubMed", "id": "23528857", "url": "https://pubmed.ncbi.nlm.nih.gov/23528857" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q76MS9-1", "protein_name": "Musculoskeletal embryonic nuclear protein 1", "gene_name": "MUSTN1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q76MS9", "url": "https://www.uniprot.org/uniprotkb/Q76MS9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.23528857", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MUSTN1 is an indispensable factor in the proliferation, differentiation and apoptosis of skeletal muscle satellite cells in chicken.", "journal": "Experimental cell research", "date": "2021-10-15", "authors": "Hu Zhi, Xu Hengyong, Lu Yuxiang, He Qijian, Yan Chaoyang, Zhao Xiaoling, Tian Yaofu, Yang Chaowu, Zhang Zengrong, Qiu Mohan, Wang Yan", "reference": { "type": "PubMed", "id": "34536390", "url": "https://pubmed.ncbi.nlm.nih.gov/34536390" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q76MS9-1", "protein_name": "Musculoskeletal embryonic nuclear protein 1", "gene_name": "MUSTN1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q76MS9", "url": "https://www.uniprot.org/uniprotkb/Q76MS9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.34536390", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conservation of the organization of five tightly clustered genes over 600 million years of divergent evolution.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1992", "authors": "Colombo P, Yon J, Garson K, Fried M", "reference": { "type": "PubMed", "id": "1631131", "url": "https://pubmed.ncbi.nlm.nih.gov/1631131" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32429-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "P32429", "url": "https://www.uniprot.org/uniprotkb/P32429" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.1631131", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The complete nucleotide sequence of chicken ribosomal protein L7a gene and the multiple factor binding sites in its 5'-flanking region.", "journal": "Biochimie", "date": "1993", "authors": "Maeda N, Kenmochi N, Tanaka T", "reference": { "type": "PubMed", "id": "8274530", "url": "https://pubmed.ncbi.nlm.nih.gov/8274530" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32429-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "P32429", "url": "https://www.uniprot.org/uniprotkb/P32429" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.8274530", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders.", "journal": "Genomics", "date": "2001", "authors": "Uechi T, Tanaka T, Kenmochi N", "reference": { "type": "PubMed", "id": "11401437", "url": "https://pubmed.ncbi.nlm.nih.gov/11401437" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98TF6-1", "protein_name": "Large ribosomal subunit protein eL36", "gene_name": "RPL36", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q98TF5-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39L; RPL39", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q98TF7-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q98TF8-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q98TF6", "url": "https://www.uniprot.org/uniprotkb/Q98TF6" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11401437", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Infectious bursal disease virus-induced activation of JNK signaling pathway is required for virus replication and correlates with virus-induced apoptosis.", "journal": "Virology", "date": "2011-11-25", "authors": "Wei Li, Zhu Shanshan, Ruan Guifeng, Hou Lei, Wang Jing, Wang Bingquan, Liu Jue", "reference": { "type": "PubMed", "id": "21968197", "url": "https://pubmed.ncbi.nlm.nih.gov/21968197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8V0Z6F0-1", "protein_name": "JNK1/MAPK8-associated membrane protein", "gene_name": "JKAMP", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P79996-1", "protein_name": "Mitogen-activated protein kinase 9", "gene_name": "MAPK9", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "A0A8V0Z6F0", "url": "https://www.uniprot.org/uniprotkb/A0A8V0Z6F0" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.21968197", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cryo-EM structure of the inactive ribosome complex accumulated in chick embryo cells in cold-stress conditions.", "journal": "FEBS Lett.", "date": "2024", "authors": "Nurullina Liliia, Terrosu Salvatore, Myasnikov Alexander G, Jenner Lasse Bohl, Yusupov Marat", "reference": { "type": "PubMed", "id": "38395592", "url": "https://pubmed.ncbi.nlm.nih.gov/38395592" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F2Z4K6-1", "protein_name": "Ribosomal protein L26 like 1", "gene_name": "RPL26L1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "R4GGJ0-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "R4GIQ2-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F6SU35-1", "protein_name": "Ribosomal protein", "gene_name": "RPL10A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A031-1", "protein_name": "SERPINE1 mRNA binding protein 1", "gene_name": "SERBP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YS49-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BVB1-1", "protein_name": "60S ribosomal protein L32", "gene_name": "RPL32", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C4N0-1", "protein_name": "Ribosomal protein S10", "gene_name": "RPS10", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NB02-1", "protein_name": "40S ribosomal protein S8", "gene_name": "RPS8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZLU2-1", "protein_name": "40S ribosomal protein S24", "gene_name": "RPS24", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q3A7P6-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1L1RNZ2-1", "protein_name": "60S ribosomal protein L29", "gene_name": "RPL29", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5NVI1-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5P3B1-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PR40-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "LOC107049046", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1L1S0X5-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1L1RT94-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NH93-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NIX0-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NQG5-1", "protein_name": "Ribosomal protein L15", "gene_name": "RPL15", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7V4-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "SLC37A4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NPA9-1", "protein_name": "DNA-(apurinic or apyrimidinic site) lyase", "gene_name": "RPS3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NN16-1", "protein_name": "40S ribosomal protein S7", "gene_name": "RPS7", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BTG1-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1BU66-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "E1C810-1", "protein_name": "Ribosomal protein L37", "gene_name": "RPL37", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2TV39-1", "protein_name": "40S ribosomal protein S27", "gene_name": "RPS27L", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2U825-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XRE7-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YUB1-1", "protein_name": "Ribosomal protein L36a", "gene_name": "RPL36A", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z985-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z8V3-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "F2Z4K6", "url": "https://www.uniprot.org/uniprotkb/F2Z4K6" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.38395592", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chicken spindlin genes on W and Z chromosomes: transcriptional expression of both genes and dynamic behavior of spindlin in interphase and mitotic cells.", "journal": "Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology", "date": "2001", "authors": "Itoh Y, Hori T, Saitoh H, Mizuno S", "reference": { "type": "PubMed", "id": "11419793", "url": "https://pubmed.ncbi.nlm.nih.gov/11419793" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90WG1-1", "protein_name": "Spindlin-Z", "gene_name": "SPIN1; SPINZ", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90WG2-1", "protein_name": "Spindlin-W", "gene_name": "SPIN1L; SPINW", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90WG1", "url": "https://www.uniprot.org/uniprotkb/Q90WG1" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11419793", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spin1z induces the male pathway in the chicken by down-regulating Tcf4.", "journal": "Gene", "date": "2021-05-15", "authors": "Jiang Jingyi, Zhang Chen, Yuan Xia, Li Jiancheng, Zhang Ming, Shi Xiang, Jin Kai, Zhang Yani, Zuo Qisheng, Chen Guohong, Li Bichun", "reference": { "type": "PubMed", "id": "33631236", "url": "https://pubmed.ncbi.nlm.nih.gov/33631236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90WG1-1", "protein_name": "Spindlin-Z", "gene_name": "SPIN1; SPINZ", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90WG1", "url": "https://www.uniprot.org/uniprotkb/Q90WG1" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.33631236", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A distinct role for secreted fibroblast growth factor-binding proteins in development.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-05-26", "authors": "Gibby Krissa A, McDonnell Kevin, Schmidt Marcel O, Wellstein Anton", "reference": { "type": "PubMed", "id": "19433791", "url": "https://pubmed.ncbi.nlm.nih.gov/19433791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q802A9-1", "protein_name": "Fibroblast growth factor-binding protein 2", "gene_name": "FGFBP2", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q802A9", "url": "https://www.uniprot.org/uniprotkb/Q802A9" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.19433791", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LIX1 regulates YAP1 activity and controls the proliferation and differentiation of stomach mesenchymal progenitors.", "journal": "BMC biology", "date": "2016-04-28", "authors": "McKey Jennifer, Martire Delphine, de Santa Barbara Pascal, Faure Sandrine", "reference": { "type": "PubMed", "id": "27125505", "url": "https://pubmed.ncbi.nlm.nih.gov/27125505" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8UVV7-1", "protein_name": "Protein limb expression 1", "gene_name": "LIX1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQF4-1", "protein_name": "Yes associated protein 1", "gene_name": "YAP1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8UVV7", "url": "https://www.uniprot.org/uniprotkb/Q8UVV7" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.27125505", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of chicken interleukin-5 receptor \u03b1-chain and analysis of its binding specificity.", "journal": "Developmental and comparative immunology", "date": "2012-07", "authors": "Fukushima Yuji, Miyai Tomohiro, Kumagae Manami, Horiuchi Hiroyuki, Furusawa Shuichi", "reference": { "type": "PubMed", "id": "22391510", "url": "https://pubmed.ncbi.nlm.nih.gov/22391510" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GKR1-1", "protein_name": "Interleukin 5 receptor subunit alpha", "gene_name": "IL5RA", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "R4GKR1", "url": "https://www.uniprot.org/uniprotkb/R4GKR1" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.22391510", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolutionarily conserved Bok proteins in the Bcl-2 family.", "journal": "FEBS Lett.", "date": "2000", "authors": "Zhang H, Holzgreve W, De Geyter C", "reference": { "type": "PubMed", "id": "11034351", "url": "https://pubmed.ncbi.nlm.nih.gov/11034351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I8I2-1", "protein_name": "Bcl-2-related ovarian killer protein", "gene_name": "BOK", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9UMX3-1", "protein_name": "Bcl-2-related ovarian killer protein", "gene_name": "BOK", "tax_name": "Human" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9I8I2", "url": "https://www.uniprot.org/uniprotkb/Q9I8I2" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11034351", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the human secreted phosphoprotein 24 gene (SPP2) and comparison of the protein sequence in nine species.", "journal": "Matrix Biol.", "date": "2004", "authors": "Bennett CS, Khorram Khorshid HR, Kitchen JA, Arteta D, Dalgleish R", "reference": { "type": "PubMed", "id": "15062857", "url": "https://pubmed.ncbi.nlm.nih.gov/15062857" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q710A0-1", "protein_name": "Secreted phosphoprotein 24", "gene_name": "SPP2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q13103-1", "protein_name": "Secreted phosphoprotein 24", "gene_name": "SPP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q711S8-1", "protein_name": "Secreted phosphoprotein 24", "gene_name": "SPP2", "tax_name": "Pig" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q710A0", "url": "https://www.uniprot.org/uniprotkb/Q710A0" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15062857", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A transposable element-mediated gene divergence that directly produces a novel type bovine Bcnt protein including the endonuclease domain of RTE-1.", "journal": "Mol. Biol. Evol.", "date": "2003", "authors": "Iwashita Shintaro, Osada Naoki, Itoh Tomohito, Sezaki Mariko, Oshima Kenshiro, Hashimoto Etsuko, Kitagawa-Arita Yuko, Takahashi Ichiro, Masui Tohru, Hashimoto Katsuyuki, Makalowski Wojciech", "reference": { "type": "PubMed", "id": "12832649", "url": "https://pubmed.ncbi.nlm.nih.gov/12832649" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q75QI0-1", "protein_name": "Heterochromatin-stabilizing protein CFDP1", "gene_name": "CFDP1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "O02751-1", "protein_name": "Protein CFDP2", "gene_name": "CFDP2", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q8HXY9-1", "protein_name": "Heterochromatin-stabilizing protein CFDP1", "gene_name": "CFDP1", "tax_name": "Bovine" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q75QI0", "url": "https://www.uniprot.org/uniprotkb/Q75QI0" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.12832649", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamic expression of RGS4 in the developing nervous system and regulation by the neural type-specific transcription factor Phox2b.", "journal": "J. Neurosci.", "date": "2003", "authors": "Grillet Nicolas, Dubreuil V\u00e9ronique, Dufour H\u00e9lo\u00efse D, Brunet Jean-Fran\u00e7ois", "reference": { "type": "PubMed", "id": "14627646", "url": "https://pubmed.ncbi.nlm.nih.gov/14627646" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SZC6-1", "protein_name": "Regulator of G protein signaling 4", "gene_name": "RGS4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q3V3I2-1", "protein_name": "Guanine nucleotide-binding protein G(t) subunit alpha-3", "gene_name": "Gnat3", "tax_name": "Mouse" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q7SZC6", "url": "https://www.uniprot.org/uniprotkb/Q7SZC6" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.14627646", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The B cell-specific major raft protein, Raftlin, is necessary for the integrity of lipid raft and BCR signal transduction.", "journal": "The EMBO journal", "date": "2003", "authors": "Saeki K, Miura Y, Aki D, Kurosaki T, Yoshimura A", "reference": { "type": "PubMed", "id": "12805216", "url": "https://pubmed.ncbi.nlm.nih.gov/12805216" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SZI5-1", "protein_name": "Raftlin", "gene_name": "RFTN1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q14699-1", "protein_name": "Raftlin", "gene_name": "RFTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6A0D4-1", "protein_name": "Raftlin", "gene_name": "Rftn1", "tax_name": "Mouse" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q7SZI5", "url": "https://www.uniprot.org/uniprotkb/Q7SZI5" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "mutagenesis": [ { "start_pos": 2, "end_pos": 2, "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of association with membranes. Same effect; when associated with S-3.", "evidence": [ { "database": "UniProtKB", "id": "Q14699", "url": "https://www.uniprot.org/uniprotkb/Q14699" }, { "database": "PubMed", "id": "12805216", "url": "https://pubmed.ncbi.nlm.nih.gov/12805216" } ], "uniprot_canonical_ac": "Q14699-1" }, { "start_pos": 3, "end_pos": 3, "sequence_org": "C", "sequence_mut": "S", "comment": "Partially affects association with membranes. Loss of association with membranes; when associated with A-2.", "evidence": [ { "database": "UniProtKB", "id": "Q14699", "url": "https://www.uniprot.org/uniprotkb/Q14699" }, { "database": "PubMed", "id": "12805216", "url": "https://pubmed.ncbi.nlm.nih.gov/12805216" } ], "uniprot_canonical_ac": "Q14699-1" } ], "record_id": "pubmed.12805216", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Upregulation of chicken p15INK4b at senescence and in the developing brain.", "journal": "Journal of cell science", "date": "2006-06-15", "authors": "Kim Soo-Hyun, Rowe Janice, Fujii Hideta, Jones Rebecca, Schmierer Bernhard, Kong Byung-Whi, Kuchler Karl, Foster Douglas, Ish-Horowicz David, Peters Gordon", "reference": { "type": "PubMed", "id": "16720639", "url": "https://pubmed.ncbi.nlm.nih.gov/16720639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZT27-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor D", "gene_name": "CDKN2B", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q7ZT27", "url": "https://www.uniprot.org/uniprotkb/Q7ZT27" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.16720639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sex-linked barring in chickens is controlled by the CDKN2A /B tumour suppressor locus.", "journal": "Pigment cell & melanoma research", "date": "2010-08", "authors": "Hellstr\u00f6m Anders R, Sundstr\u00f6m Elisabeth, Gunnarsson Ulrika, Bed'Hom Bertrand, Tixier-Boichard Michele, Honaker Christa F, Sahlqvist Anna-Stina, Jensen Per, K\u00e4mpe Olle, Siegel Paul B, Kerje Susanne, Andersson Leif", "reference": { "type": "PubMed", "id": "20374521", "url": "https://pubmed.ncbi.nlm.nih.gov/20374521" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZT27-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor D", "gene_name": "CDKN2B", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q7ZT27", "url": "https://www.uniprot.org/uniprotkb/Q7ZT27" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.20374521", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene pathways and cell cycle-related genes in cultured avian primordial germ cells.", "journal": "Poultry science", "date": "2012-12", "authors": "Rengaraj D, Lee B R, Choi J W, Lee S I, Seo H W, Kim T H, Choi H J, Song G, Han J Y", "reference": { "type": "PubMed", "id": "23155027", "url": "https://pubmed.ncbi.nlm.nih.gov/23155027" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZT27-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor D", "gene_name": "CDKN2B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90600-1", "protein_name": "Retinoblastoma-associated protein", "gene_name": "RB1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "F1NGX6-1", "protein_name": "E3 ubiquitin-protein ligase Mdm2", "gene_name": "MDM2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "R4GJW5-1", "protein_name": "Wee1-like protein kinase", "gene_name": "WEE1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q7ZT27", "url": "https://www.uniprot.org/uniprotkb/Q7ZT27" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.23155027", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA methylation analysis of the gene CDKN2B in Gallus gallus (chicken).", "journal": "Folia biologica", "date": "2013", "authors": "Gryzi\u0144ska Magdalena, Andraszek Katarzyna, Jocek Grzegorz", "reference": { "type": "PubMed", "id": "24279164", "url": "https://pubmed.ncbi.nlm.nih.gov/24279164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZT27-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor D", "gene_name": "CDKN2B", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q7ZT27", "url": "https://www.uniprot.org/uniprotkb/Q7ZT27" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.24279164", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Epistatic effect between ACACA and FABP2 gene on abdominal fat traits in broilers.", "journal": "Journal of genetics and genomics = Yi chuan xue bao", "date": "2010-08", "authors": "Hu Guo, Wang Shouzhi, Tian Jianwei, Chu Lili, Li Hui", "reference": { "type": "PubMed", "id": "20816383", "url": "https://pubmed.ncbi.nlm.nih.gov/20816383" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZZZ5-1", "protein_name": "Fatty acid-binding protein, intestinal", "gene_name": "FABP2", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q7ZZZ5", "url": "https://www.uniprot.org/uniprotkb/Q7ZZZ5" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.20816383", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and functional characterization of chicken stem cell antigen 2.", "journal": "Developmental and comparative immunology", "date": "2010-03", "authors": "Mao Weifeng, Hunt Henry D, Cheng Hans H", "reference": { "type": "PubMed", "id": "19945479", "url": "https://pubmed.ncbi.nlm.nih.gov/19945479" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8AV16-1", "protein_name": "B-cell antigen receptor complex-associated protein beta chain", "gene_name": "CD79B", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9YGC1-1", "protein_name": "B-cell linker protein", "gene_name": "BLNK", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8AV16", "url": "https://www.uniprot.org/uniprotkb/Q8AV16" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.19945479", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Allele-specific expression analysis reveals CD79B has a cis-acting regulatory element that responds to Marek's disease virus infection in chickens.", "journal": "Poultry science", "date": "2011-06", "authors": "Meydan H, Yildiz M A, Dodgson J B, Cheng H H", "reference": { "type": "PubMed", "id": "21597060", "url": "https://pubmed.ncbi.nlm.nih.gov/21597060" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8AV16-1", "protein_name": "B-cell antigen receptor complex-associated protein beta chain", "gene_name": "CD79B", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8AV16", "url": "https://www.uniprot.org/uniprotkb/Q8AV16" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.21597060", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Negative selection of self-reactive chicken B cells requires B cell receptor signaling and is independent of the bursal microenvironment.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2014-04-01", "authors": "Davani Dariush, Pancer Zeev, Cheroutre Hilde, Ratcliffe Michael J H", "reference": { "type": "PubMed", "id": "24516196", "url": "https://pubmed.ncbi.nlm.nih.gov/24516196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8AV16-1", "protein_name": "B-cell antigen receptor complex-associated protein beta chain", "gene_name": "CD79B", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8AV16", "url": "https://www.uniprot.org/uniprotkb/Q8AV16" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.24516196", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The nucleotide-sugar transporter family: a phylogenetic approach.", "journal": "Biochimie", "date": "2003", "authors": "Martinez-Duncker Ivan, Mollicone Rosella, Codogno Patrice, Oriol Rafael", "reference": { "type": "PubMed", "id": "12770764", "url": "https://pubmed.ncbi.nlm.nih.gov/12770764" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8AWB6-1", "protein_name": "Solute carrier family 35 member B1", "gene_name": "SLC35B1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q8MII5-1", "protein_name": "Solute carrier family 35 member B1", "gene_name": "SLC35B1", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q8MIA3-1", "protein_name": "Probable UDP-sugar transporter protein SLC35A4", "gene_name": "SLC35A4", "tax_name": "Pig" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8AWB6", "url": "https://www.uniprot.org/uniprotkb/Q8AWB6" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.12770764", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of a human Bid homologue protein from Gallus gallus.", "journal": "Gene", "date": "2006-05-10", "authors": "D\u00edaz-Gil Gema, G\u00f3mez-Esquer Francisco, Agudo David, Delc\u00e1n Jos\u00e9, Mart\u00ednez-Arribas Fernando, Rivas Carmen, Schneider Jos\u00e9, Palomar Maria Angustias, Linares Rafael", "reference": { "type": "PubMed", "id": "16483731", "url": "https://pubmed.ncbi.nlm.nih.gov/16483731" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8JGM8-1", "protein_name": "BH3-interacting domain death agonist", "gene_name": "BID", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8JGM8", "url": "https://www.uniprot.org/uniprotkb/Q8JGM8" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.16483731", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Paladin is an antiphosphatase that regulates neural crest cell formation and migration.", "journal": "Developmental biology", "date": "2012-11-15", "authors": "Roffers-Agarwal Julaine, Hutt Karla J, Gammill Laura S", "reference": { "type": "PubMed", "id": "22926139", "url": "https://pubmed.ncbi.nlm.nih.gov/22926139" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8JHZ8-1", "protein_name": "Paladin", "gene_name": "PALD1", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8JHZ8", "url": "https://www.uniprot.org/uniprotkb/Q8JHZ8" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.22926139", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hole is a novel gene product expressed in the developing heart and brain.", "journal": "Mech. Dev.", "date": "2002", "authors": "Nesset AL, Bader DM", "reference": { "type": "PubMed", "id": "12204283", "url": "https://pubmed.ncbi.nlm.nih.gov/12204283" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8QFN3-1", "protein_name": "Transmembrane protein 121", "gene_name": "TMEM121", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q80XA0-1", "protein_name": "Transmembrane protein 121", "gene_name": "Tmem121", "tax_name": "Mouse" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8QFN3", "url": "https://www.uniprot.org/uniprotkb/Q8QFN3" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.12204283", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression and localization of the neuropeptide Y-Y4 receptor in the chick spleen: mRNA upregulation by high ambient temperature.", "journal": "Neuropeptides", "date": "2024-10", "authors": "Nishimura Haruka, Elhussiny Mohamed Z, Ouchi Yoshimitsu, Haraguchi Shogo, Itoh Taichi Q, Gilbert Elizabeth R, Cline Mark A, Nishimura Shotaro, Hosaka Yoshinao Z, Takahashi Eiki, Cockrem John F, Bungo Takashi, Chowdhury Vishwajit S", "reference": { "type": "PubMed", "id": "39121580", "url": "https://pubmed.ncbi.nlm.nih.gov/39121580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8QGM3-1", "protein_name": "Neuropeptide Y receptor Y4", "gene_name": "NPY4R", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P28673-1", "protein_name": "Pro-neuropeptide Y", "gene_name": "NPY", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8QGM3", "url": "https://www.uniprot.org/uniprotkb/Q8QGM3" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.39121580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sp1 and Sp3 regulate transcription of the chicken GAS41 gene.", "journal": "Biochimica et biophysica acta", "date": "2010", "authors": "H\u00fcbner Katrin, Phi-van Loc", "reference": { "type": "PubMed", "id": "20153453", "url": "https://pubmed.ncbi.nlm.nih.gov/20153453" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8UVS4-1", "protein_name": "YEATS domain-containing protein 4", "gene_name": "YEATS4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90WR8-1", "protein_name": "Transcription factor Sp3", "gene_name": "SP3", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8UVS4", "url": "https://www.uniprot.org/uniprotkb/Q8UVS4" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.20153453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vivo binding of Orc2 to a region of the chicken lysozyme GAS41 origin containing multiple Sp1-binding sites.", "journal": "DNA and cell biology", "date": "2012-02", "authors": "H\u00fcbner Katrin, Phi-van Loc", "reference": { "type": "PubMed", "id": "21879882", "url": "https://pubmed.ncbi.nlm.nih.gov/21879882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8UVS4-1", "protein_name": "YEATS domain-containing protein 4", "gene_name": "YEATS4", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q8UVS4", "url": "https://www.uniprot.org/uniprotkb/Q8UVS4" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.21879882", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Avian serum response factor expression restricted primarily to muscle cell lineages is required for alpha-actin gene transcription.", "journal": "Dev. Biol.", "date": "1996", "authors": "Croissant J D, Kim J H, Eichele G, Goering L, Lough J, Prywes R, Schwartz R J", "reference": { "type": "PubMed", "id": "8660892", "url": "https://pubmed.ncbi.nlm.nih.gov/8660892" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90718-1", "protein_name": "Serum response factor", "gene_name": "SRF", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90718", "url": "https://www.uniprot.org/uniprotkb/Q90718" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.8660892", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hoxa-11 and Hoxa-13 are involved in repression of MyoD during limb muscle development.", "journal": "Development, growth & differentiation", "date": "2003", "authors": "Yamamoto Masakazu, Kuroiwa Atsushi", "reference": { "type": "PubMed", "id": "14706073", "url": "https://pubmed.ncbi.nlm.nih.gov/14706073" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90X25-1", "protein_name": "Homeobox protein Hox-A13", "gene_name": "HOXA13", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P16075-1", "protein_name": "Myoblast determination protein 1 homolog", "gene_name": "MYOD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P31258-1", "protein_name": "Homeobox protein Hox-A11", "gene_name": "HOXA11", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90X25", "url": "https://www.uniprot.org/uniprotkb/Q90X25" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.14706073", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An intrinsic timer specifies distal structures of the vertebrate limb.", "journal": "Nature communications", "date": "2015-09-18", "authors": "Saiz-Lopez Patricia, Chinnaiya Kavitha, Campa Victor M, Delgado Irene, Ros Maria A, Towers Matthew", "reference": { "type": "PubMed", "id": "26381580", "url": "https://pubmed.ncbi.nlm.nih.gov/26381580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90X25-1", "protein_name": "Homeobox protein Hox-A13", "gene_name": "HOXA13", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q90X25", "url": "https://www.uniprot.org/uniprotkb/Q90X25" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.26381580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a chicken homologue in the Brn-3 subfamily of POU-transcription factors.", "journal": "Brain Res. Dev. Brain Res.", "date": "1997", "authors": "Lindeberg J, Klint P, Williams R, Ebendal T", "reference": { "type": "PubMed", "id": "9205808", "url": "https://pubmed.ncbi.nlm.nih.gov/9205808" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q91998-1", "protein_name": "Brain-specific homeobox/POU domain protein 3", "gene_name": "BRN3", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q91998", "url": "https://www.uniprot.org/uniprotkb/Q91998" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.9205808", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Olfaction in birds: differential embryonic expression of nine putative odorant receptor genes in the avian olfactory system.", "journal": "Mech. Dev.", "date": "1996", "authors": "Nef S, Allaman I, Fiumelli H, De Castro E, Nef P", "reference": { "type": "PubMed", "id": "8734500", "url": "https://pubmed.ncbi.nlm.nih.gov/8734500" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98913-1", "protein_name": "Olfactory receptor-like protein COR8", "gene_name": "COR8", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q98914-1", "protein_name": "Olfactory receptor-like protein COR9", "gene_name": "COR9", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P37067-1", "protein_name": "Olfactory receptor-like protein COR1", "gene_name": "COR1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P37068-1", "protein_name": "Olfactory receptor-like protein COR2", "gene_name": "COR2", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P37069-1", "protein_name": "Olfactory receptor-like protein COR3", "gene_name": "COR3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P37070-1", "protein_name": "Olfactory receptor-like protein COR4", "gene_name": "COR4", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P37071-1", "protein_name": "Olfactory receptor-like protein COR5", "gene_name": "COR5", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "P37072-1", "protein_name": "Olfactory receptor-like protein COR6", "gene_name": "COR6", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q98913", "url": "https://www.uniprot.org/uniprotkb/Q98913" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.8734500", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Homologues of Twisted gastrulation are extracellular cofactors in antagonism of BMP signalling.", "journal": "Nature", "date": "2001", "authors": "Scott IC, Blitz IL, Pappano WN, Maas SA, Cho KW, Greenspan DS", "reference": { "type": "PubMed", "id": "11260715", "url": "https://pubmed.ncbi.nlm.nih.gov/11260715" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98T89-1", "protein_name": "Twisted gastrulation protein homolog 1", "gene_name": "TWSG1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9DGH0-1", "protein_name": "Twisted gastrulation protein homolog 1-A", "gene_name": "twsg1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9Z0E2-1", "protein_name": "Chordin", "gene_name": "Chrd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9GZX9-1", "protein_name": "Twisted gastrulation protein homolog 1", "gene_name": "TWSG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9EP52-1", "protein_name": "Twisted gastrulation protein homolog 1", "gene_name": "Twsg1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P21275-1", "protein_name": "Bone morphogenetic protein 4", "gene_name": "Bmp4", "tax_name": "Mouse" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q98T89", "url": "https://www.uniprot.org/uniprotkb/Q98T89" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11260715", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neurobeachin: a protein kinase A-anchoring, beige/Chediak-Higashi protein homolog implicated in neuronal membrane traffic.", "journal": "J. Neurosci.", "date": "2000", "authors": "Wang X, Herberg FW, Laue MM, Wullner C, Hu B, Petrasch-Parwez E, Kilimann MW", "reference": { "type": "PubMed", "id": "11102458", "url": "https://pubmed.ncbi.nlm.nih.gov/11102458" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DDD5-1", "protein_name": "Neurobeachin", "gene_name": "NBEA", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9W4E2-5", "protein_name": "Neurobeachin", "gene_name": "rg", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9EPN1-1", "protein_name": "Neurobeachin", "gene_name": "Nbea", "tax_name": "Mouse" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9DDD5", "url": "https://www.uniprot.org/uniprotkb/Q9DDD5" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11102458", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Wpkci, encoding an altered form of PKCI, is conserved widely on the avian W chromosome and expressed in early female embryos: implication of its role in female sex determination.", "journal": "Molecular biology of the cell", "date": "2000-10", "authors": "Hori T, Asakawa S, Itoh Y, Shimizu N, Mizuno S", "reference": { "type": "PubMed", "id": "11029061", "url": "https://pubmed.ncbi.nlm.nih.gov/11029061" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I870-1", "protein_name": "Histidine triad nucleotide binding protein W", "gene_name": "LOC121108205", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9I870", "url": "https://www.uniprot.org/uniprotkb/Q9I870" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11029061", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ASW: a gene with conserved avian W-linkage and female specific expression in chick embryonic gonad.", "journal": "Development genes and evolution", "date": "2000-05", "authors": "O'Neill M, Binder M, Smith C, Andrews J, Reed K, Smith M, Millar C, Lambert D, Sinclair A", "reference": { "type": "PubMed", "id": "11180828", "url": "https://pubmed.ncbi.nlm.nih.gov/11180828" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I870-1", "protein_name": "Histidine triad nucleotide binding protein W", "gene_name": "LOC121108205", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9I870", "url": "https://www.uniprot.org/uniprotkb/Q9I870" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.11180828", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Adaptive molecular evolution of HINTW, a female-specific gene in birds.", "journal": "Molecular biology and evolution", "date": "2004-02", "authors": "Ceplitis Helene, Ellegren Hans", "reference": { "type": "PubMed", "id": "12949135", "url": "https://pubmed.ncbi.nlm.nih.gov/12949135" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I870-1", "protein_name": "Histidine triad nucleotide binding protein W", "gene_name": "LOC121108205", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9I870", "url": "https://www.uniprot.org/uniprotkb/Q9I870" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.12949135", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome.", "journal": "Molecular biology and evolution", "date": "2005-10", "authors": "Backstr\u00f6m Niclas, Ceplitis Helene, Berlin Sofia, Ellegren Hans", "reference": { "type": "PubMed", "id": "15972846", "url": "https://pubmed.ncbi.nlm.nih.gov/15972846" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I870-1", "protein_name": "Histidine triad nucleotide binding protein W", "gene_name": "LOC121108205", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9I870", "url": "https://www.uniprot.org/uniprotkb/Q9I870" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.15972846", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genetic evidence against a role for W-linked histidine triad nucleotide binding protein (HINTW) in avian sex determination.", "journal": "The International journal of developmental biology", "date": "2009", "authors": "Smith Craig A, Roeszler Kelly N, Sinclair Andrew H", "reference": { "type": "PubMed", "id": "19123127", "url": "https://pubmed.ncbi.nlm.nih.gov/19123127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I870-1", "protein_name": "Histidine triad nucleotide binding protein W", "gene_name": "LOC121108205", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9I870", "url": "https://www.uniprot.org/uniprotkb/Q9I870" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.19123127", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role and function of the Hintw in early sex differentiation in chicken (Gallus gallus) embryo.", "journal": "Animal biotechnology", "date": "2023-02", "authors": "Sun Changhua, Jin Kai, Zhou Jing, Zuo Qisheng, Song Jiuzhou, Yani Zhang, Chen Guohong, Li Bichun", "reference": { "type": "PubMed", "id": "34153202", "url": "https://pubmed.ncbi.nlm.nih.gov/34153202" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I870-1", "protein_name": "Histidine triad nucleotide binding protein W", "gene_name": "LOC121108205", "tax_name": "Chicken" } ], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "Q9I870", "url": "https://www.uniprot.org/uniprotkb/Q9I870" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "record_id": "pubmed.34153202", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]