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Ziwei, Pan Ting, Long Xubing, Sun Qinqin, Wang Pei-Hui, Li Xiaojuan, Kuang Ersheng", "reference": { "type": "PubMed", "id": "35239449", "url": "https://pubmed.ncbi.nlm.nih.gov/35239449" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09429-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DTC3-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P09601-1", "protein_name": "Heme oxygenase 1", "gene_name": "HMOX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6L5-1", "protein_name": "Reticulophagy regulator 1", "gene_name": "RETREG1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P09429", "url": "https://www.uniprot.org/uniprotkb/P09429" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } 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Med.", "date": "2022", "authors": "Shin Jaemin, Kim Young Hun, Lee Bin, Chang Jae Ho, Choi Hee Youn, Lee Hoojung, Song Ki Chan, Kwak Man Sup, Choi Ji Eun, Shin Jeon-Soo", "reference": { "type": "PubMed", "id": "36585612", "url": "https://pubmed.ncbi.nlm.nih.gov/36585612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09429-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92995-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 13", "gene_name": "USP13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P09429", "url": "https://www.uniprot.org/uniprotkb/P09429" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36585612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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L, Bisht KS, Cui H, Kohn E, Feinberg AP, Gius D", "reference": { "type": "PubMed", "id": "18765639", "url": "https://pubmed.ncbi.nlm.nih.gov/18765639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46379-1", "protein_name": "Large proline-rich protein BAG6", "gene_name": "BAG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI51-1", "protein_name": "Transcriptional repressor CTCFL", "gene_name": "CTCFL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18765639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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39 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 38 }, { "field": "exact_o_linked_sites", "count": 38 }, { "field": "exact_o_linked_glycan_sites", "count": 38 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "filter_code", "uniprot_canonical_ac", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteasomal degradation of preemptive quality control (pQC) substrates is mediated by an AIRAPL-p97 complex.", "journal": "Mol. Biol. Cell", "date": "2015", "authors": "Braunstein I, Zach L, Allan S, Kalies KU, Stanhill A", "reference": { "type": "PubMed", "id": "26337389", "url": "https://pubmed.ncbi.nlm.nih.gov/26337389" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46379-1", "protein_name": "Large proline-rich protein BAG6", "gene_name": "BAG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1R2-1", "protein_name": "Large proline-rich protein BAG6", "gene_name": "Bag6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91X58-1", "protein_name": "AN1-type zinc finger protein 2B", "gene_name": "Zfand2b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WV99-1", "protein_name": "AN1-type zinc finger protein 2B", "gene_name": "ZFAND2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01853-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "Vcp", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 201, "end_pos": 201, "sequence_org": "A", "sequence_mut": "Q", "comment": "Loss of interaction with ubiquitin polymers and ubiquitinated proteins, loss of interaction with BAG6 and no effect on association with the proteasome complex; when associated with Q-229 and Q-231.", "evidence": [ { "database": "UniProtKB", "id": "Q91X58", "url": "https://www.uniprot.org/uniprotkb/Q91X58" }, { "database": "PubMed", "id": "18467495", "url": "https://pubmed.ncbi.nlm.nih.gov/18467495" }, { "database": "PubMed", "id": "26337389", "url": "https://pubmed.ncbi.nlm.nih.gov/26337389" } ], "uniprot_canonical_ac": "Q91X58-1" }, { "start_pos": 229, "end_pos": 229, "sequence_org": "A", "sequence_mut": "Q", "comment": "Decreased 'Lys-48'-linked polyubiquitin binding. Loss of interaction with ubiquitin polymers and ubiquitinated proteins, loss of interaction with BAG6 and no effect on association with the proteasome complex; when associated with Q-201 and Q-231. Loss of 'Lys-48'-linked polyubiquitin binding, loss of interaction with BAG6 and loss of association with the proteasome complex; when associated with Q-205 and Q-231.", "evidence": [ { "database": "UniProtKB", "id": "Q91X58", "url": "https://www.uniprot.org/uniprotkb/Q91X58" }, { "database": "PubMed", "id": "18467495", "url": "https://pubmed.ncbi.nlm.nih.gov/18467495" }, { "database": "PubMed", "id": "26337389", "url": "https://pubmed.ncbi.nlm.nih.gov/26337389" }, { "database": "PubMed", "id": "26876100", "url": "https://pubmed.ncbi.nlm.nih.gov/26876100" } ], "uniprot_canonical_ac": "Q91X58-1" }, { "start_pos": 231, "end_pos": 231, "sequence_org": "A", "sequence_mut": "Q", "comment": "Decreased 'Lys-48'-linked polyubiquitin binding. Loss of interaction with ubiquitin polymers and ubiquitinated proteins, loss of interaction with BAG6 and no effect on association with the proteasome complex; when associated with Q-201 and Q-229. Loss of 'Lys-48'-linked polyubiquitin binding, loss of interaction with BAG6 and loss of association with the proteasome complex; when associated with Q-205 and Q-229.", "evidence": [ { "database": "UniProtKB", "id": "Q91X58", "url": "https://www.uniprot.org/uniprotkb/Q91X58" }, { "database": "PubMed", "id": "18467495", "url": "https://pubmed.ncbi.nlm.nih.gov/18467495" }, { "database": "PubMed", "id": "26337389", "url": "https://pubmed.ncbi.nlm.nih.gov/26337389" }, { "database": "PubMed", "id": "26876100", "url": "https://pubmed.ncbi.nlm.nih.gov/26876100" } ], "uniprot_canonical_ac": "Q91X58-1" } ], "record_id": "pubmed.26337389", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pre-emptive Quality Control Protects the ER from Protein Overload via the Proximity of ERAD Components and SRP.", "journal": "Cell reports", "date": "2015", "authors": "Kadowaki H, Nagai A, Maruyama T, Takami Y, Satrimafitrah P, Kato H, Honda A, Hatta T, Natsume T, Sato T, Kai H, Ichijo H, Nishitoh H", "reference": { "type": "PubMed", "id": "26565908", "url": "https://pubmed.ncbi.nlm.nih.gov/26565908" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46379-1", "protein_name": "Large proline-rich protein BAG6", "gene_name": "BAG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q80-1", "protein_name": "Derlin-3", "gene_name": "DERL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZP9-1", "protein_name": "Derlin-2", "gene_name": "DERL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26565908", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for regulation of the nucleo-cytoplasmic distribution of Bag6 by TRC35.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017", "authors": "Mock JY, Xu Y, Ye Y, Clemons WM Jr", "reference": { "type": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46379-1", "protein_name": "Large proline-rich 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Localizes in the nucleus and cytoplasm. Decreases interaction with GET4, localizes in the nucleus and increases GET4 ubiquitination; when associated with A-1042.", "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "P46379-1" }, { "start_pos": 1018, "end_pos": 1018, "sequence_org": "W", "sequence_mut": "A", "comment": "Decreases interaction with GET4. Localizes in the nucleus. Decreases interaction with GET4, localizes in the nucleus and increases GET4 ubiquitination; when associated with A-1042.", "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "P46379-1" }, { "start_pos": 1030, "end_pos": 1031, "sequence_org": "RK", "sequence_mut": "SL", "comment": "No effect on interaction with GET4 and KPNA2.", "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "P46379-1" }, { "start_pos": 1042, "end_pos": 1042, "sequence_org": "Y", "sequence_mut": "A", "comment": "Decreases interaction with GET4. Localizes in the nucleus. Decreases interaction with GET4, localizes in the nucleus and increases GET4 ubiquitination; when associated with A-1010 or A-1018.", "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "P46379-1" }, { "start_pos": 1049, "end_pos": 1050, "sequence_org": "KR", "sequence_mut": "SL", "comment": "No effect on interaction with GET4. Inhibits interaction with KPNA2.", "evidence": [ { "database": "UniProtKB", "id": "P46379", "url": "https://www.uniprot.org/uniprotkb/P46379" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "P46379-1" }, { "start_pos": 182, "end_pos": 182, "sequence_org": "Y", "sequence_mut": "A", "comment": "No effect on interaction with BAG6.", "evidence": [ { "database": "UniProtKB", "id": "Q7L5D6", "url": "https://www.uniprot.org/uniprotkb/Q7L5D6" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "Q7L5D6-1" }, { "start_pos": 188, "end_pos": 188, "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on interaction with BAG6.", "evidence": [ { "database": "UniProtKB", "id": "Q7L5D6", "url": "https://www.uniprot.org/uniprotkb/Q7L5D6" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "Q7L5D6-1" }, { "start_pos": 195, "end_pos": 195, "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on interaction with BAG6.", "evidence": [ { "database": "UniProtKB", "id": "Q7L5D6", "url": "https://www.uniprot.org/uniprotkb/Q7L5D6" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "Q7L5D6-1" }, { "start_pos": 241, "end_pos": 241, "sequence_org": "W", "sequence_mut": "A", "comment": "No effect on interaction with BAG6.", "evidence": [ { "database": "UniProtKB", "id": "Q7L5D6", "url": "https://www.uniprot.org/uniprotkb/Q7L5D6" }, { "database": "PubMed", "id": "29042515", "url": "https://pubmed.ncbi.nlm.nih.gov/29042515" } ], "uniprot_canonical_ac": "Q7L5D6-1" }, { "start_pos": 242, "end_pos": 242, "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on interaction with BAG6.", "evidence": [ { "database": "UniProtKB", "id": "Q7L5D6", "url": 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