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overexpressing CPD photolyase.", "journal": "Planta", "date": "2009-08", "authors": "Kaiser Gebhard, Kleiner Oliver, Beisswenger Christoph, Batschauer Alfred", "reference": { "type": "PubMed", "id": "19521716", "url": "https://pubmed.ncbi.nlm.nih.gov/19521716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SB00-1", "protein_name": "Deoxyribodipyrimidine photo-lyase", "gene_name": "PHR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SB00", "url": "https://www.uniprot.org/uniprotkb/Q9SB00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19521716", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Divergent evolution of CHD3 proteins resulted in MOM1 refining epigenetic control in vascular plants.", "journal": "PLoS genetics", "date": "2008-08-22", "authors": "Caikovski Marian, Yokthongwattana Chotika, Habu Yoshiki, Nishimura Taisuke, Mathieu Olivier, Paszkowski Jerzy", "reference": { "type": "PubMed", "id": "18725928", "url": "https://pubmed.ncbi.nlm.nih.gov/18725928" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M658-1", "protein_name": "Helicase protein MOM1", "gene_name": "MOM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M658", "url": "https://www.uniprot.org/uniprotkb/Q9M658" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18725928", "abstract": "", "glycosylation": [], "mutagenesis": 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"MORPHEUS' MOLECULE1 is required to prevent aberrant RNA transcriptional read-through in Arabidopsis.", "journal": "Plant physiology", "date": "2010-11", "authors": "Zhou Yue, Zhang Jun, Lin Huixin, Guo Guangqin, Guo Yan", "reference": { "type": "PubMed", "id": "20826701", "url": "https://pubmed.ncbi.nlm.nih.gov/20826701" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M658-1", "protein_name": "Helicase protein MOM1", "gene_name": "MOM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M658", "url": "https://www.uniprot.org/uniprotkb/Q9M658" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20826701", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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localizations of phosphorylated Lhcb1 and Lhcb2 isoforms reveal the role of Lhcb2 in the formation of the PSI-LHCII supercomplex in Arabidopsis during state transitions.", "journal": "Biochimica et biophysica acta", "date": "2015-12", "authors": "Crepin Aurelie, Caffarri Stefano", "reference": { "type": "PubMed", "id": "26392145", "url": "https://pubmed.ncbi.nlm.nih.gov/26392145" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SHR7-1", "protein_name": "Chlorophyll a-b binding protein 2.1, chloroplastic", "gene_name": "LHCB2.1; LHCB21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7J7-1", "protein_name": "Chlorophyll a-b binding protein 2.2, chloroplastic", "gene_name": "LHCB2.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XF87-1", "protein_name": "Chlorophyll a-b binding protein 2.4, chloroplastic", "gene_name": "LHCB2.4; LHCB23", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SHR7", "url": "https://www.uniprot.org/uniprotkb/Q9SHR7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26392145", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "The CKH2/PKL chromatin remodeling factor negatively regulates cytokinin responses in Arabidopsis calli.", "journal": "Plant & cell physiology", "date": "2011-04", "authors": "Furuta Kaori, Kubo Minoru, Sano Kiyomi, Demura Taku, Fukuda Hiroo, Liu Yao-Guang, Shibata Daisuke, Kakimoto Tatsuo", "reference": { "type": "PubMed", "id": "21357580", "url": "https://pubmed.ncbi.nlm.nih.gov/21357580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9S775-1", "protein_name": "CHD3-type chromatin-remodeling factor PICKLE", "gene_name": "PKL", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9S775", "url": "https://www.uniprot.org/uniprotkb/Q9S775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 301, "end_pos": 301, "sequence_org": "G", "sequence_mut": "R", "comment": "In chk2-2; hypersensitivity to cytokinins.", "evidence": [ { "database": "UniProtKB", "id": "Q9S775", "url": "https://www.uniprot.org/uniprotkb/Q9S775" }, { "database": "PubMed", "id": "21357580", "url": "https://pubmed.ncbi.nlm.nih.gov/21357580" } ], "uniprot_canonical_ac": "Q9S775-1" } ], "record_id": "pubmed.21357580", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis.", "journal": "The Plant cell", "date": "2012-02", "authors": "Wu Anhui, Allu Annapurna Devi, Garapati Prashanth, Siddiqui Hamad, Dortay Hakan, Zanor Maria-In\u00e9s, Asensi-Fabado Maria Amparo, Munn\u00e9-Bosch Sergi, Antonio Carla, Tohge Takayuki, Fernie Alisdair R, Kaufmann Kerstin, Xue Gang-Ping, Mueller-Roeber Bernd, Balazadeh Salma", "reference": { "type": "PubMed", "id": "22345491", "url": "https://pubmed.ncbi.nlm.nih.gov/22345491" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SK55-1", "protein_name": "Transcription factor JUNGBRUNNEN 1", "gene_name": "JUB1; NAC042", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GIANT CHLOROPLAST 1 is essential for correct plastid division in Arabidopsis.", "journal": "Current biology : CB", "date": "2004-05-04", "authors": "Maple Jodi, Fujiwara Makoto T, Kitahata Nobutaka, Lawson Tracy, Baker Neil R, Yoshida Shigeo, M\u00f8ller Simon Geir", "reference": { "type": "PubMed", "id": "15120068", "url": "https://pubmed.ncbi.nlm.nih.gov/15120068" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SJU9-1", "protein_name": "Epimerase family protein SDR39U1 homolog, chloroplastic", "gene_name": "GC1; SULA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJU9", "url": "https://www.uniprot.org/uniprotkb/Q9SJU9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15120068", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An Arabidopsis homolog of the bacterial cell division inhibitor SulA is involved in plastid division.", "journal": "Plant Cell", "date": "2004", "authors": "Raynaud C\u00e9cile, Cassier-Chauvat Corinne, Perennes Claudette, Bergounioux Catherine", "reference": { "type": "PubMed", "id": "15208387", "url": 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[] } ] }, { "title": "Bacterial expression and purification of the Arabidopsis NADPH-cytochrome P450 reductase ATR2.", "journal": "Protein expression and purification", "date": "2000-04", "authors": "Hull A K, Celenza J L", "reference": { "type": "PubMed", "id": "10733884", "url": "https://pubmed.ncbi.nlm.nih.gov/10733884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SUM3-1", "protein_name": "NADPH--cytochrome P450 reductase 2", "gene_name": "ATR2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SUM3", "url": "https://www.uniprot.org/uniprotkb/Q9SUM3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10733884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Gene structure, heterologous expression in insect cells, and differential regulation.", "journal": "Plant physiology", "date": "1998-01", "authors": "Mizutani M, Ohta D", "reference": { "type": "PubMed", "id": "9449848", "url": "https://pubmed.ncbi.nlm.nih.gov/9449848" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SUM3-1", "protein_name": "NADPH--cytochrome P450 reductase 2", "gene_name": "ATR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB48-1", "protein_name": "NADPH--cytochrome P450 reductase 1", "gene_name": "ATR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SUM3", "url": "https://www.uniprot.org/uniprotkb/Q9SUM3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9449848", "abstract": "", "glycosylation": [], "mutagenesis": [], 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