[ { "title": "Structure and dynamics of micelle-bound human alpha-synuclein.", "journal": "J. Biol. Chem.", "date": "2005", "authors": "Ulmer Tobias S, Bax Ad, Cole Nelson B, Nussbaum Robert L", "reference": { "type": "PubMed", "id": "15615727", "url": "https://pubmed.ncbi.nlm.nih.gov/15615727" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15615727", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alpha-synuclein transgenic mice: relevance to multiple system atrophy.", "journal": "Movement disorders : official journal of the Movement Disorder Society", "date": "2005", "authors": "Fillon G, Kahle PJ", "reference": { "type": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.16092093", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The role of G-protein-coupled receptor kinase 5 in pathogenesis of sporadic Parkinson's disease.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2006", "authors": "Arawaka S, Wada M, Goto S, Karube H, Sakamoto M, Ren CH, Koyama S, Nagasawa H, Kimura H, Kawanami T, Kurita K, Tajima K, Daimon M, Baba M, Kido T, Saino S, Goto K, Asao H, Kitanaka C, Takashita E, Hongo S, Nakamura T, Kayama T, Suzuki Y, Kobayashi K, Katagiri T, Kurokawa K, Kurimura M, Toyoshima I, Niizato K, Tsuchiya K, Iwatsubo T, Muramatsu M, Matsumine H, Kato T", "reference": { "type": "PubMed", "id": "16957079", "url": "https://pubmed.ncbi.nlm.nih.gov/16957079" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "PubMed", "id": "16957079", "url": "https://pubmed.ncbi.nlm.nih.gov/16957079" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.16957079", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dyrk1A phosphorylates alpha-synuclein and enhances intracellular inclusion formation.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Kim EJ, Sung JY, Lee HJ, Rhim H, Hasegawa M, Iwatsubo T, Min do S, Kim J, Paik SR, Chung KC", "reference": { "type": "PubMed", "id": "16959772", "url": "https://pubmed.ncbi.nlm.nih.gov/16959772" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 87, "end_pos": 87, "kinase_uniprot_canonical_ac": "Q13627-1", "kinase_gene_name": "DYRK1A", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "16959772", "url": "https://pubmed.ncbi.nlm.nih.gov/16959772" } ], "site_lbl": "Ser87", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.16959772", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of G-protein coupled receptor kinase 2 in paired helical filaments and neurofibrillary tangles.", "journal": "Journal of neuropathology and experimental neurology", "date": "2006", "authors": "Takahashi M, Uchikado H, Caprotti D, Weidenheim KM, Dickson DW, Ksiezak-Reding H, Pasinetti GM", "reference": { "type": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.17146290", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Casein kinase 2 is the major enzyme in brain that phosphorylates Ser129 of human alpha-synuclein: Implication for alpha-synucleinopathies.", "journal": "FEBS letters", "date": "2007", "authors": "Ishii A, Nonaka T, Taniguchi S, Saito T, Arai T, Mann D, Iwatsubo T, Hisanaga S, Goedert M, Hasegawa M", "reference": { "type": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.17868672", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of antibodies that selectively detect alpha-synuclein in pathological inclusions.", "journal": "Acta neuropathologica", "date": "2008-07", "authors": "Waxman Elisa A, Duda John E, Giasson Benoit I", "reference": { "type": "PubMed", "id": "18414880", "url": "https://pubmed.ncbi.nlm.nih.gov/18414880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18414880", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Specificity and regulation of casein kinase-mediated phosphorylation of alpha-synuclein.", "journal": "Journal of neuropathology and experimental neurology", "date": "2008", "authors": "Waxman EA, Giasson BI", "reference": { "type": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.18451726", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Serine 129 phosphorylation of alpha-synuclein induces unfolded protein response-mediated cell death.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Sugeno N, Takeda A, Hasegawa T, Kobayashi M, Kikuchi A, Mori F, Wakabayashi K, Itoyama Y", "reference": { "type": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.18562315", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cathepsin D expression level affects alpha-synuclein processing, aggregation, and toxicity in vivo.", "journal": "Molecular brain", "date": "2009", "authors": "Cullen V, Lindfors M, Ng J, Paetau A, Swinton E, Kolodziej P, Boston H, Saftig P, Woulfe J, Feany MB, Myllykangas L, Schlossmacher MG, Tyynela J", "reference": { "type": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.19203374", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Contribution of endogenous G-protein-coupled receptor kinases to Ser129 phosphorylation of alpha-synuclein in HEK293 cells.", "journal": "Biochemical and biophysical research communications", "date": "2009", "authors": "Sakamoto M, Arawaka S, Hara S, Sato H, Cui C, Machiya Y, Koyama S, Wada M, Kawanami T, Kurita K, Kato T", "reference": { "type": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "P43250-1", "kinase_gene_name": "GRK6", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.19410557", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Parkinson disease-associated A30P mutation stabilizes alpha-synuclein against proteasomal degradation triggered by heme oxygenase-1 over-expression in human neuroblastoma cells.", "journal": "Journal of neurochemistry", "date": "2009", "authors": "Song W, Patel A, Qureshi HY, Han D, Schipper HM, Paudel HK", "reference": { "type": "PubMed", "id": "19457084", "url": "https://pubmed.ncbi.nlm.nih.gov/19457084" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19457084", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Relationship between alpha synuclein phosphorylation, proteasomal inhibition and cell death: relevance to Parkinson's disease pathogenesis.", "journal": "Journal of neurochemistry", "date": "2009", "authors": "Chau KY, Ching HL, Schapira AH, Cooper JM", "reference": { "type": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.19493164", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SIRT1 activator resveratrol protects SK-N-BE cells from oxidative stress and against toxicity caused by alpha-synuclein or amyloid-beta (1-42) peptide.", "journal": "Journal of neurochemistry", "date": "2009", "authors": "Albani D, Polito L, Batelli S, De Mauro S, Fracasso C, Martelli G, Colombo L, Manzoni C, Salmona M, Caccia S, Negro A, Forloni G", "reference": { "type": "PubMed", "id": "19558452", "url": "https://pubmed.ncbi.nlm.nih.gov/19558452" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19558452", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lrrk2 phosphorylates alpha synuclein at serine 129: Parkinson disease implications.", "journal": "Biochemical and biophysical research communications", "date": "2009", "authors": "Qing H, Wong W, McGeer EG, McGeer PL", "reference": { "type": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "Q5S007-1", "kinase_gene_name": "LRRK2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.19576176", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide microarray analysis of the differential neuroprotective effects of antioxidants in neuroblastoma cells overexpressing the familial Parkinson's disease alpha-synuclein A53T mutation.", "journal": "Neurochemical research", "date": "2010", "authors": "Ma L, Cao TT, Kandpal G, Warren L, Fred Hess J, Seabrook GR, Ray WJ", "reference": { "type": "PubMed", "id": "19649707", "url": "https://pubmed.ncbi.nlm.nih.gov/19649707" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19649707", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of hydrophobic residue requirements for alpha-synuclein fibrillization.", "journal": "Biochemistry", "date": "2009", "authors": "Waxman EA, Mazzulli JR, Giasson BI", "reference": { "type": "PubMed", "id": "19722699", "url": "https://pubmed.ncbi.nlm.nih.gov/19722699" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 67, "end_pos": 71, "sequence_org": "GGAVV", "sequence_mut": "", "comment": "Reduces polymerization into amyloid fibrils.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "19722699", "url": "https://pubmed.ncbi.nlm.nih.gov/19722699" } ], "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 71, "end_pos": 82, "sequence_org": "VTGVTAVAQKTV", "sequence_mut": "", "comment": "Impairs polymerization into amyloid fibrils.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "19722699", "url": "https://pubmed.ncbi.nlm.nih.gov/19722699" } ], "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 76, "end_pos": 77, "sequence_org": "AV", "sequence_mut": "", "comment": "Impairs polymerization into amyloid fibrils.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "19722699", "url": "https://pubmed.ncbi.nlm.nih.gov/19722699" } ], "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 77, "end_pos": 77, "sequence_org": "V", "sequence_mut": "", "comment": "Does not affect polymerization into amyloid fibrils.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "19722699", "url": "https://pubmed.ncbi.nlm.nih.gov/19722699" } ], "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 78, "end_pos": 78, "sequence_org": "A", "sequence_mut": "", "comment": "Does not affect polymerization into amyloid fibrils.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "19722699", "url": "https://pubmed.ncbi.nlm.nih.gov/19722699" } ], "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 85, "end_pos": 94, "sequence_org": "AGSIAAATGF", "sequence_mut": "", "comment": "Reduces polymerization into amyloid fibrils.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "19722699", "url": "https://pubmed.ncbi.nlm.nih.gov/19722699" } ], "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.19722699", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine and serine phosphorylation of alpha-synuclein have opposing effects on neurotoxicity and soluble oligomer formation.", "journal": "The Journal of clinical investigation", "date": "2009", "authors": "Chen L, Periquet M, Wang X, Negro A, McLean PJ, Hyman BT, Feany MB", "reference": { "type": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 125, "end_pos": 125, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by FYN", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "12893833", "url": "https://pubmed.ncbi.nlm.nih.gov/12893833" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "11162638", "url": "https://pubmed.ncbi.nlm.nih.gov/11162638" } ], "site_lbl": "Tyr125", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.19855133", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Membrane lipid modification by docosahexaenoic acid (DHA) promotes the formation of \u03b1-synuclein inclusion bodies immunopositive for SUMO-1 in oligodendroglial cells after oxidative stress.", "journal": "Journal of molecular neuroscience : MN", "date": "2011-03", "authors": "Riedel Michael, Goldbaum Olaf, Wille Michael, Richter-Landsberg Christiane", "reference": { "type": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.20725866", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of TPPP/p25 on \u03b1-synuclein-mediated oligodendroglial degeneration and the protective effect of SIRT2 inhibition in a cellular model of multiple system atrophy.", "journal": "Neurochemistry international", "date": "2010-12", "authors": "Hasegawa Takafumi, Baba Toru, Kobayashi Michiko, Konno Masatoshi, Sugeno Naoto, Kikuchi Akio, Itoyama Yasuto, Takeda Atsushi", "reference": { "type": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.20849899", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of kinases involved in the phosphorylation of aggregated \u03b1-synuclein.", "journal": "Journal of neuroscience research", "date": "2011-02", "authors": "Waxman Elisa A, Giasson Benoit I", "reference": { "type": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.21162130", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coordination features and affinity of the Cu(2)+ site in the alpha-synuclein protein of Parkinson's disease.", "journal": "Biochemistry", "date": "2011", "authors": "Dudzik CG, Walter ED, Millhauser GL", "reference": { "type": "PubMed", "id": "21319811", "url": "https://pubmed.ncbi.nlm.nih.gov/21319811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 2, "end_pos": 2, "sequence_org": "D", "sequence_mut": "A", "comment": "Impairs copper-binding.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "21319811", "url": "https://pubmed.ncbi.nlm.nih.gov/21319811" } ], "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 50, "end_pos": 50, "sequence_org": "H", "sequence_mut": "A", "comment": "Impairs copper-binding.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "21319811", "url": "https://pubmed.ncbi.nlm.nih.gov/21319811" } ], "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.21319811", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of segments of alpha-synuclein fused to maltose-binding protein suggest intermediate states during amyloid formation.", "journal": "Protein Sci.", "date": "2011", "authors": "Zhao Minglei, Cascio Duilio, Sawaya Michael R, Eisenberg David", "reference": { "type": "PubMed", "id": "21462277", "url": "https://pubmed.ncbi.nlm.nih.gov/21462277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21462277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "alpha-Synuclein occurs physiologically as a helically folded tetramer that resists aggregation.", "journal": "Nature", "date": "2011", "authors": "Bartels Tim, Choi Joanna G, Selkoe Dennis J", "reference": { "type": "PubMed", "id": "21841800", "url": "https://pubmed.ncbi.nlm.nih.gov/21841800" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21841800", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Wild type and P301L mutant Tau promote neuro-inflammation and \u03b1-Synuclein accumulation in lentiviral gene delivery models.", "journal": "Molecular and cellular neurosciences", "date": "2012-01", "authors": "Khandelwal Preeti J, Dumanis Sonya B, Herman Alexander M, Rebeck G William, Moussa Charbel E-H", "reference": { "type": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.21945393", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Authentically phosphorylated \u03b1-synuclein at Ser129 accelerates neurodegeneration in a rat model of familial Parkinson's disease.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2011-11-16", "authors": "Sato Hiroyasu, Arawaka Shigeki, Hara Susumu, Fukushima Shingo, Koga Kaori, Koyama Shingo, Kato Takeo", "reference": { "type": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.22090514", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Elucidating the role of C-terminal post-translational modifications using protein semisynthesis strategies: alpha-synuclein phosphorylation at tyrosine 125.", "journal": "Journal of the American Chemical Society", "date": "2012", "authors": "Hejjaoui M, Butterfield S, Fauvet B, Vercruysse F, Cui J, Dikiy I, Prudent M, Olschewski D, Zhang Y, Eliezer D, Lashuel HA", "reference": { "type": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 125, "end_pos": 125, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by FYN", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "12893833", "url": "https://pubmed.ncbi.nlm.nih.gov/12893833" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "11162638", "url": "https://pubmed.ncbi.nlm.nih.gov/11162638" } ], "site_lbl": "Tyr125", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.22339654", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Suppression of \u03b1-synuclein toxicity and vesicle trafficking defects by phosphorylation at S129 in yeast depends on genetic context.", "journal": "Human molecular genetics", "date": "2012-06-01", "authors": "Sancenon Vicente, Lee Sue-Ann, Patrick Christina, Griffith Janice, Paulino Amy, Outeiro Tiago F, Reggiori Fulvio, Masliah Eliezer, Muchowski Paul J", "reference": { "type": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.22357655", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An antibody with high reactivity for disease-associated \u03b1-synuclein reveals extensive brain pathology.", "journal": "Acta neuropathologica", "date": "2012-07", "authors": "Kovacs Gabor G, Wagner Uta, Dumont Benoit, Pikkarainen Maria, Osman Awad A, Streichenberger Nathalie, Leisser Irene, Verch\u00e8re J\u00e9r\u00e9my, Baron Thierry, Alafuzoff Irina, Budka Herbert, Perret-Liaudet Armand, Lachmann Ingolf", "reference": { "type": "PubMed", "id": "22370907", "url": "https://pubmed.ncbi.nlm.nih.gov/22370907" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22370907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-Terminal acetylation is critical for forming alpha-helical oligomer of alpha-synuclein.", "journal": "Protein science : a publication of the Protein Society", "date": "2012", "authors": "Trexler AJ, Rhoades E", "reference": { "type": "PubMed", "id": "22407793", "url": "https://pubmed.ncbi.nlm.nih.gov/22407793" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22407793", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of \u03b1-Synuclein at Y125 and S129 alters its metal binding properties: implications for understanding the role of \u03b1-Synuclein in the pathogenesis of Parkinson's Disease and related disorders.", "journal": "ACS chemical neuroscience", "date": "2011-11-16", "authors": "Lu Yu, Prudent Michel, Fauvet Bruno, Lashuel Hilal A, Girault Hubert H", "reference": { "type": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 125, "end_pos": 125, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by FYN", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "12893833", "url": "https://pubmed.ncbi.nlm.nih.gov/12893833" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "11162638", "url": "https://pubmed.ncbi.nlm.nih.gov/11162638" } ], "site_lbl": "Tyr125", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 133, "end_pos": 133, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr133", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 136, "end_pos": 136, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr136", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.22860160", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Suppression of dynamin GTPase decreases \u03b1-synuclein uptake by neuronal and oligodendroglial cells: a potent therapeutic target for synucleinopathy.", "journal": "Molecular neurodegeneration", "date": "2012-08-14", "authors": "Konno Masatoshi, Hasegawa Takafumi, Baba Toru, Miura Emiko, Sugeno Naoto, Kikuchi Akio, Fiesel Fabienne C, Sasaki Tsutomu, Aoki Masashi, Itoyama Yasuto, Takeda Atsushi", "reference": { "type": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.22892036", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The role of Ser129 phosphorylation of \u03b1-synuclein in neurodegeneration of Parkinson's disease: a review of in vivo models.", "journal": "Reviews in the neurosciences", "date": "2013", "authors": "Sato Hiroyasu, Kato Takeo, Arawaka Shigeki", "reference": { "type": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.23314528", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel alpha-synuclein missense mutation in Parkinson disease.", "journal": "Neurology", "date": "2013", "authors": "Proukakis C, Dudzik CG, Brier T, MacKay DS, Cooper JM, Millhauser GL, Houlden H, Schapira AH", "reference": { "type": "PubMed", "id": "23427326", "url": "https://pubmed.ncbi.nlm.nih.gov/23427326" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23427326", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alpha-synuclein p.H50Q, a novel pathogenic mutation for Parkinson's disease.", "journal": "Movement disorders : official journal of the Movement Disorder Society", "date": "2013", "authors": "Appel-Cresswell S, Vilarino-Guell C, Encarnacion M, Sherman H, Yu I, Shah B, Weir D, Thompson C, Szu-Tu C, Trinh J, Aasly JO, Rajput A, Rajput AH, Jon Stoessl A, Farrer MJ", "reference": { "type": "PubMed", "id": "23457019", "url": "https://pubmed.ncbi.nlm.nih.gov/23457019" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23457019", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Serine 129 phosphorylation of membrane-associated \u03b1-synuclein modulates dopamine transporter function in a G protein-coupled receptor kinase-dependent manner.", "journal": "Molecular biology of the cell", "date": "2013-06", "authors": "Hara Susumu, Arawaka Shigeki, Sato Hiroyasu, Machiya Youhei, Cui Can, Sasaki Asuka, Koyama Shingo, Kato Takeo", "reference": { "type": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.23576548", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PLK2 modulates \u03b1-synuclein aggregation in yeast and mammalian cells.", "journal": "Molecular neurobiology", "date": "2013-12", "authors": "Basso Elisa, Antas Pedro, Marijanovic Zrinka, Gon\u00e7alves Susana, Tenreiro Sandra, Outeiro Tiago Fleming", "reference": { "type": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.23677647", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pramipexole reduces phosphorylation of \u03b1-synuclein at serine-129.", "journal": "Journal of molecular neuroscience : MN", "date": "2013-10", "authors": "Chau Kai-Yin, Cooper J Mark, Schapira Anthony Henry V", "reference": { "type": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.23681749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "c-Abl phosphorylates \u03b1-synuclein and regulates its degradation: implication for \u03b1-synuclein clearance and contribution to the pathogenesis of Parkinson's disease.", "journal": "Human molecular genetics", "date": "2014-06-01", "authors": "Mahul-Mellier Anne-Laure, Fauvet Bruno, Gysbers Amanda, Dikiy Igor, Oueslati Abid, Georgeon Sandrine, Lamontanara Allan J, Bisquertt Alejandro, Eliezer David, Masliah Eliezer, Halliday Glenda, Hantschel Oliver, Lashuel Hilal A", "reference": { "type": "PubMed", "id": "24412932", "url": "https://pubmed.ncbi.nlm.nih.gov/24412932" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 39, "end_pos": 39, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "24412932", "url": "https://pubmed.ncbi.nlm.nih.gov/24412932" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr39", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.24412932", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vitro phosphorylation does not influence the aggregation kinetics of WT \u03b1-synuclein in contrast to its phosphorylation mutants.", "journal": "International journal of molecular sciences", "date": "2014-01-15", "authors": "Schreurs Sarah, Gerard Melanie, Derua Rita, Waelkens Etienne, Taymans Jean-Marc, Baekelandt Veerle, Engelborghs Yves", "reference": { "type": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 125, "end_pos": 125, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by FYN", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "12893833", "url": "https://pubmed.ncbi.nlm.nih.gov/12893833" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "11162638", "url": "https://pubmed.ncbi.nlm.nih.gov/11162638" } ], "site_lbl": "Tyr125", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 133, "end_pos": 133, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr133", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 136, "end_pos": 136, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr136", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.24434619", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein phosphorylation in neurodegeneration: friend or foe?", "journal": "Frontiers in molecular neuroscience", "date": "2014", "authors": "Tenreiro S, Eckermann K, Outeiro TF", "reference": { "type": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.24860424", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The H50Q mutation enhances alpha-synuclein aggregation, secretion, and toxicity.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Khalaf O, Fauvet B, Oueslati A, Dikiy I, Mahul-Mellier AL, Ruggeri FS, Mbefo MK, Vercruysse F, Dietler G, Lee SJ, Eliezer D, Lashuel HA", "reference": { "type": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.24936070", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Linking alpha-synuclein phosphorylation to reactive oxygen species formation and mitochondrial dysfunction in SH-SY5Y cells.", "journal": "Molecular and cellular neurosciences", "date": "2014-09", "authors": "Perfeito Rita, L\u00e1zaro Diana F, Outeiro Tiago F, Rego A Cristina", "reference": { "type": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25109238", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Efficient modification of alpha-synuclein serine 129 by protein kinase CK1 requires phosphorylation of tyrosine 125 as a priming event.", "journal": "ACS chemical neuroscience", "date": "2014-12-17", "authors": "Kosten Jonas, Binolfi Andres, Stuiver Marchel, Verzini Silvia, Theillet Francois-Xavier, Bekei Beata, van Rossum Marleen, Selenko Philipp", "reference": { "type": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 125, "end_pos": 125, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by FYN", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "12893833", "url": "https://pubmed.ncbi.nlm.nih.gov/12893833" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "11162638", "url": "https://pubmed.ncbi.nlm.nih.gov/11162638" } ], "site_lbl": "Tyr125", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 133, "end_pos": 133, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr133", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 136, "end_pos": 136, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr136", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25320964", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GSK-3\u03b2 dysregulation contributes to parkinson's-like pathophysiology with associated region-specific phosphorylation and accumulation of tau and \u03b1-synuclein.", "journal": "Cell death and differentiation", "date": "2015-05", "authors": "Credle J J, George J L, Wills J, Duka V, Shah K, Lee Y-C, Rodriguez O, Simkins T, Winter M, Moechars D, Steckler T, Goudreau J, Finkelstein D I, Sidhu A", "reference": { "type": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25394490", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evaluating the relationship between amyloid-\u03b2 and \u03b1-synuclein phosphorylated at Ser129 in dementia with Lewy bodies and Parkinson's disease.", "journal": "Alzheimer's research & therapy", "date": "2014", "authors": "Swirski Marta, Miners J Scott, de Silva Rohan, Lashley Tammaryn, Ling Helen, Holton Janice, Revesz Tamas, Love Seth", "reference": { "type": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25452767", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular determinants of alpha-synuclein mutants' oligomerization and membrane interactions.", "journal": "ACS chemical neuroscience", "date": "2015", "authors": "Tsigelny IF, Sharikov Y, Kouznetsova VL, Greenberg JP, Wrasidlo W, Overk C, Gonzalez T, Trejo M, Spencer B, Kosberg K, Masliah E", "reference": { "type": "PubMed", "id": "25561023", "url": "https://pubmed.ncbi.nlm.nih.gov/25561023" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 35, "end_pos": 35, "sequence_org": "E", "sequence_mut": "K", "comment": "No effect on oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "25561023", "url": "https://pubmed.ncbi.nlm.nih.gov/25561023" } ], "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 57, "end_pos": 57, "sequence_org": "E", "sequence_mut": "K", "comment": "Increases oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "25561023", "url": "https://pubmed.ncbi.nlm.nih.gov/25561023" } ], "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25561023", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Colonic mucosal a-synuclein lacks specificity as a biomarker for Parkinson disease.", "journal": "Neurology", "date": "2015-02-10", "authors": "Visanji Naomi P, Marras Connie, Kern Drew S, Al Dakheel Amaal, Gao Andrew, Liu Louis W C, Lang Anthony E, Hazrati Lili-Naz", "reference": { "type": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25589666", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylated \u03b1-synuclein in Parkinson's disease: correlation depends on disease severity.", "journal": "Acta neuropathologica communications", "date": "2015-01-31", "authors": "Stewart Tessandra, Sossi Vesna, Aasly Jan O, Wszolek Zbigniew K, Uitti Ryan J, Hasegawa Kazuko, Yokoyama Teruo, Zabetian Cyrus P, Leverenz James B, Stoessl Alexander Jon, Wang Yu, Ginghina Carmen, Liu Changqin, Cain Kevin C, Auinger Peggy, Kang Un Jung, Jensen Poul Henning, Shi Min, Zhang Jing", "reference": { "type": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25637461", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Parkinson disease mutant E46K enhances \u03b1-synuclein phosphorylation in mammalian cell lines, in yeast, and in vivo.", "journal": "The Journal of biological chemistry", "date": "2015-04-10", "authors": "Mbefo Martial Kamdem, Fares Mohamed-Bilal, Paleologou Katerina, Oueslati Abid, Yin Guowei, Tenreiro Sandra, Pinto Madalena, Outeiro Tiago, Zweckstetter Markus, Masliah Eliezer, Lashuel Hilal A", "reference": { "type": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 87, "end_pos": 87, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "28195695", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" } ], "site_lbl": "Ser87", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.25657004", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted Overexpression of \u03b1-Synuclein by rAAV2/1 Vectors Induces Progressive Nigrostriatal Degeneration and Increases Vulnerability to MPTP in Mouse.", "journal": "PloS one", "date": "2015", "authors": "Song Lian-Kun, Ma Kai-Li, Yuan Yu-He, Mu Zheng, Song Xiu-Yun, Niu Fei, Han Ning, Chen Nai-Hong", "reference": { "type": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26114655", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LK6/Mnk2a is a new kinase of alpha synuclein phosphorylation mediating neurodegeneration.", "journal": "Scientific reports", "date": "2015-07-29", "authors": "Zhang Shiqing, Xie Jiang, Xia Ying, Yu Shu, Gu Zhili, Feng Ruili, Luo Guanghong, Wang Dong, Wang Kai, Jiang Meng, Cheng Xiao, Huang Hai, Zhang Wu, Wen Tieqiao", "reference": { "type": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26220523", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct clinical and neuropathological features of G51D SNCA mutation cases compared with SNCA duplication and H50Q mutation.", "journal": "Molecular neurodegeneration", "date": "2015", "authors": "Kiely AP, Ling H, Asi YT, Kara E, Proukakis C, Schapira AH, Morris HR, Roberts HC, Lubbe S, Limousin P, Lewis PA, Lees AJ, Quinn N, Hardy J, Love S, Revesz T, Houlden H, Holton JL", "reference": { "type": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 125, "end_pos": 125, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by FYN", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "12893833", "url": "https://pubmed.ncbi.nlm.nih.gov/12893833" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "11162638", "url": "https://pubmed.ncbi.nlm.nih.gov/11162638" } ], "site_lbl": "Tyr125", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26306801", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exogenous \u03b1-synuclein induces toll-like receptor 4 dependent inflammatory responses in astrocytes.", "journal": "BMC neuroscience", "date": "2015-09-07", "authors": "Rannikko Emmy H, Weber Stephanie S, Kahle Philipp J", "reference": { "type": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26346361", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the toxic core of alpha-synuclein from invisible crystals.", "journal": "Nature", "date": "2015", "authors": "Rodriguez Jose A, Ivanova Magdalena I, Sawaya Michael R, Cascio Duilio, Reyes Francis E, Shi Dan, Sangwan Smriti, Guenther Elizabeth L, Johnson Lisa M, Zhang Meng, Jiang Lin, Arbing Mark A, Nannenga Brent L, Hattne Johan, Whitelegge Julian, Brewster Aaron S, Messerschmidt Marc, Boutet S\u00e9bastien, Sauter Nicholas K, Gonen Tamir, Eisenberg David S", "reference": { "type": "PubMed", "id": "26352473", "url": "https://pubmed.ncbi.nlm.nih.gov/26352473" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26352473", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Semisynthesis and Enzymatic Preparation of Post-translationally Modified \u03b1-Synuclein.", "journal": "Methods in molecular biology (Clifton, N.J.)", "date": "2016", "authors": "Fauvet Bruno, Lashuel Hilal A", "reference": { "type": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26453202", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enteric nervous system \u03b1-synuclein immunoreactivity in idiopathic REM sleep behavior disorder.", "journal": "Neurology", "date": "2015-11-17", "authors": "Sprenger Fabienne S, Stefanova Nadia, Gelpi Ellen, Seppi Klaus, Navarro-Otano Judith, Offner Felix, Vilas Dolores, Valldeoriola Francesc, Pont-Sunyer Claustre, Aldecoa Iban, Gaig Carles, Gines Angels, Cuatrecasas Miriam, H\u00f6gl Birgit, Frauscher Birgit, Iranzo Alex, Wenning Gregor K, Vogel Wolfgang, Tolosa Eduardo, Poewe Werner", "reference": { "type": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26475692", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Review: Spreading the word: precise animal models and validated methods are vital when evaluating prion-like behaviour of alpha-synuclein.", "journal": "Neuropathology and applied neurobiology", "date": "2016", "authors": "Rey NL, George S, Brundin P", "reference": { "type": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26666838", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effects of Serine 129 Phosphorylation on \u03b1-Synuclein Aggregation, Membrane Association, and Internalization.", "journal": "The Journal of biological chemistry", "date": "2016-02-26", "authors": "Samuel Filsy, Flavin William P, Iqbal Sobia, Pacelli Consiglia, Sri Renganathan Sri Dushyaanthan, Trudeau Louis-Eric, Campbell Edward M, Fraser Paul E, Tandon Anurag", "reference": { "type": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26719332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Oligomeric and phosphorylated alpha-synuclein as potential CSF biomarkers for Parkinson's disease.", "journal": "Molecular neurodegeneration", "date": "2016", "authors": "Majbour NK, Vaikath NN, van Dijk KD, Ardah MT, Varghese S, Vesterager LB, Montezinho LP, Poole S, Safieh-Garabedian B, Tokuda T, Teunissen CE, Berendse HW, van de Berg WD, El-Agnaf OM", "reference": { "type": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26782965", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intracellular repair of oxidation-damaged \u03b1-synuclein fails to target C-terminal modification sites.", "journal": "Nature communications", "date": "2016-01-25", "authors": "Binolfi Andres, Limatola Antonio, Verzini Silvia, Kosten Jonas, Theillet Francois-Xavier, Rose Honor May, Bekei Beata, Stuiver Marchel, van Rossum Marleen, Selenko Philipp", "reference": { "type": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 133, "end_pos": 133, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr133", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 136, "end_pos": 136, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr136", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.26807843", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Solid-state NMR structure of a pathogenic fibril of full-length human alpha-synuclein.", "journal": "Nat. Struct. Mol. Biol.", "date": "2016", "authors": "Tuttle Marcus D, Comellas Gemma, Nieuwkoop Andrew J, Covell Dustin J, Berthold Deborah A, Kloepper Kathryn D, Courtney Joseph M, Kim Jae K, Barclay Alexander M, Kendall Amy, Wan William, Stubbs Gerald, Schwieters Charles D, Lee Virginia M Y, George Julia M, Rienstra Chad M", "reference": { "type": "PubMed", "id": "27018801", "url": "https://pubmed.ncbi.nlm.nih.gov/27018801" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27018801", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High expression of \u03b1-synuclein in damaged mitochondria with PLA2G6 dysfunction.", "journal": "Acta neuropathologica communications", "date": "2016-03-30", "authors": "Sumi-Akamaru Hisae, Beck Goichi, Shinzawa Koei, Kato Shinsuke, Riku Yuichi, Yoshida Mari, Fujimura Harutoshi, Tsujimoto Yoshihide, Sakoda Saburo, Mochizuki Hideki", "reference": { "type": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.27030050", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exogenous Alpha-Synuclein Alters Pre- and Post-Synaptic Activity by Fragmenting Lipid Rafts.", "journal": "EBioMedicine", "date": "2016-05", "authors": "Emanuele Marco, Esposito Alessandro, Camerini Serena, Antonucci Flavia, Ferrara Silvia, Seghezza Silvia, Catelani Tiziano, Crescenzi Marco, Marotta Roberto, Canale Claudio, Matteoli Michela, Menna Elisabetta, Chieregatti Evelina", "reference": { "type": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.27322472", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "C-Terminal Tyrosine Residue Modifications Modulate the Protective Phosphorylation of Serine 129 of \u03b1-Synuclein in a Yeast Model of Parkinson's Disease.", "journal": "PLoS genetics", "date": "2016-06", "authors": "Kleinknecht Alexandra, Popova Blagovesta, L\u00e1zaro Diana F, Pinho Raquel, Valerius Oliver, Outeiro Tiago F, Braus Gerhard H", "reference": { "type": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 125, "end_pos": 125, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by FYN", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "12893833", "url": "https://pubmed.ncbi.nlm.nih.gov/12893833" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "22339654", "url": "https://pubmed.ncbi.nlm.nih.gov/22339654" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "11162638", "url": "https://pubmed.ncbi.nlm.nih.gov/11162638" } ], "site_lbl": "Tyr125", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 133, "end_pos": 133, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr133", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 136, "end_pos": 136, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "25320964", "url": "https://pubmed.ncbi.nlm.nih.gov/25320964" }, { "database": "PubMed", "id": "26807843", "url": "https://pubmed.ncbi.nlm.nih.gov/26807843" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr136", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 39, "end_pos": 39, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "24412932", "url": "https://pubmed.ncbi.nlm.nih.gov/24412932" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" } ], "site_lbl": "Tyr39", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.27341336", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Development and characterization of polo-like kinase 2 loaded nanoparticles-A novel strategy for (serine-129) phosphorylation of alpha-synuclein.", "journal": "International journal of pharmaceutics", "date": "2016", "authors": "Rodriguez-Nogales C, Garbayo E, Martinez-Valbuena I, Sebastian V, Luquin MR, Blanco-Prieto MJ", "reference": { "type": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.27863657", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The effects of the novel A53E alpha-synuclein mutation on its oligomerization and aggregation.", "journal": "Acta neuropathologica communications", "date": "2016-12-09", "authors": "L\u00e1zaro Diana F, Dias Mariana Castro, Carija Anita, Navarro Susanna, Madaleno Carolina Silva, Tenreiro Sandra, Ventura Salvador, Outeiro Tiago F", "reference": { "type": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.27938414", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping of Surface-Exposed Epitopes of In Vitro and In Vivo Aggregated Species of Alpha-Synuclein.", "journal": "Cellular and molecular neurobiology", "date": "2017-10", "authors": "Almandoz-Gil Leire, Lindstr\u00f6m Veronica, Sigvardson Jessica, Kahle Philipp J, Lannfelt Lars, Ingelsson Martin, Bergstr\u00f6m Joakim", "reference": { "type": "PubMed", "id": "28028735", "url": "https://pubmed.ncbi.nlm.nih.gov/28028735" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28028735", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "O-GlcNAcylation of \u03b1-Synuclein at Serine 87 Reduces Aggregation without Affecting Membrane Binding.", "journal": "ACS chemical biology", "date": "2017-04-21", "authors": "Lewis Yuka E, Galesic Ana, Levine Paul M, De Leon Cesar A, Lamiri Natalie, Brennan Caroline K, Pratt Matthew R", "reference": { "type": "PubMed", "id": "28195695", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "automatic_literature_mining": true, "reported": true }, "site_seq": "S", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8GF7&bu=0&command=select+.F:87;+center+selection;+zoom+selection" }, "start_pos": 87, "start_aa": "Ser", "end_pos": 87, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser87", "evidence": [ { "id": "28487126", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28487126" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "28195695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "8GF7", "database": "PDB", "url": "https://www.rcsb.org/structure/8GF7" }, { "id": "8JEX", "database": "PDB", "url": "https://www.rcsb.org/structure/8JEX" }, { "id": "9D5C", "database": "PDB", "url": "https://www.rcsb.org/structure/9D5C" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "000000000000000100000.00000000001000.00.01011", "uniprot_canonical_ac": "P37840-1" } ], "phosphorylation": [ { "start_pos": 87, "end_pos": 87, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "28195695", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" } ], "site_lbl": "Ser87", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.28195695", "abstract": "", "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] }, { "title": "\u03b1-Synuclein promotes dilation of the exocytotic fusion pore.", "journal": "Nature neuroscience", "date": "2017-05", "authors": "Logan Todd, Bendor Jacob, Toupin Chantal, Thorn Kurt, Edwards Robert H", "reference": { "type": "PubMed", "id": "28288128", "url": "https://pubmed.ncbi.nlm.nih.gov/28288128" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28288128", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "O-GlcNAc modification inhibits the calpain-mediated cleavage of \u03b1-synuclein.", "journal": "Bioorganic & medicinal chemistry", "date": "2017-09-15", "authors": "Levine Paul M, De Leon Cesar A, Galesic Ana, Balana Aaron, Marotta Nicholas P, Lewis Yuka E, Pratt Matthew R", "reference": { "type": "PubMed", "id": "28487126", "url": "https://pubmed.ncbi.nlm.nih.gov/28487126" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "automatic_literature_mining", "site_category_dict": { "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "28487126", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28487126" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "32144674", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32144674" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "000000000000000010000.00000000001000.00.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "automatic_literature_mining": true, "reported": true }, "site_seq": "S", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8GF7&bu=0&command=select+.F:87;+center+selection;+zoom+selection" }, "start_pos": 87, "start_aa": "Ser", "end_pos": 87, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser87", "evidence": [ { "id": "28487126", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28487126" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "28195695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "8GF7", "database": "PDB", "url": "https://www.rcsb.org/structure/8GF7" }, { "id": "8JEX", "database": "PDB", "url": "https://www.rcsb.org/structure/8JEX" }, { "id": "9D5C", "database": "PDB", "url": "https://www.rcsb.org/structure/9D5C" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "000000000000000100000.00000000001000.00.01011", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.28487126", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] } ] }, { "title": "Prion-Like Seeding of Misfolded \u03b1-Synuclein in the Brains of Dementia with Lewy Body Patients in RT-QUIC.", "journal": "Molecular neurobiology", "date": "2018-05", "authors": "Sano Kazunori, Atarashi Ryuichiro, Satoh Katsuya, Ishibashi Daisuke, Nakagaki Takehiro, Iwasaki Yasushi, Yoshida Mari, Murayama Shigeo, Mishima Kenichi, Nishida Noriyuki", "reference": { "type": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 87, "end_pos": 87, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "28195695", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" } ], "site_lbl": "Ser87", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.28550528", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enzymatic O-GlcNAcylation of alpha-synuclein reduces aggregation and increases SDS-resistant soluble oligomers.", "journal": "Neuroscience letters", "date": "2017", "authors": "Zhang J, Lei H, Chen Y, Ma YT, Jiang F, Tan J, Zhang Y, Li JD", "reference": { "type": "PubMed", "id": "28673834", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 42, "start_aa": "Ser", "end_pos": 42, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser42", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 44, "start_aa": "Thr", "end_pos": 44, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr44", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 54, "start_aa": "Thr", "end_pos": 54, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr54", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" }, { "id": "P37840", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P37840" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 59, "start_aa": "Thr", "end_pos": 59, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr59", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 64, "start_aa": "Thr", "end_pos": 64, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr64", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" }, { "id": "P37840", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P37840" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "automatic_literature_mining", "site_category_dict": { "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "28487126", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28487126" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "32144674", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32144674" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "000000000000000010000.00000000001000.00.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 75, "start_aa": "Thr", "end_pos": 75, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr75", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 81, "start_aa": "Thr", "end_pos": 81, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr81", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 87, "start_aa": "Ser", "end_pos": 87, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser87", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" }, { "id": "P37840", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P37840" }, { "id": "2893", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2893" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01011", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "automatic_literature_mining": true, "reported": true }, "site_seq": "S", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8GF7&bu=0&command=select+.F:87;+center+selection;+zoom+selection" }, "start_pos": 87, "start_aa": "Ser", "end_pos": 87, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser87", "evidence": [ { "id": "28487126", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28487126" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "28195695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "8GF7", "database": "PDB", "url": "https://www.rcsb.org/structure/8GF7" }, { "id": "8JEX", "database": "PDB", "url": "https://www.rcsb.org/structure/8JEX" }, { "id": "9D5C", "database": "PDB", "url": "https://www.rcsb.org/structure/9D5C" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "000000000000000100000.00000000001000.00.01011", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.28673834", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 11 }, { "field": "total_sites", "count": 9 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 9 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 9 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 9 }, { "field": "exact_o_linked_sites", "count": 9 }, { "field": "exact_o_linked_glycan_sites", "count": 9 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "mining_tool", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "mining_tool", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 9 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 9 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 9 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 9 }, { "field": "exact_o_linked_sites", "count": 9 }, { "field": "exact_o_linked_glycan_sites", "count": 9 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "mining_tool", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "mining_tool", "icn3d_view.label", "icn3d_view.url" ] } ] }, { "title": "Homologous HSV1 and alpha-synuclein peptides stimulate a T cell response in Parkinson's disease.", "journal": "Journal of neuroimmunology", "date": "2017-09-15", "authors": "Caggiu E, Paulus K, Galleri G, Arru G, Manetti R, Sechi G P, Sechi L A", "reference": { "type": "PubMed", "id": "28778441", "url": "https://pubmed.ncbi.nlm.nih.gov/28778441" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28778441", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "\u03b1-Synuclein Amyloids Hijack Prion Protein to Gain Cell Entry, Facilitate Cell-to-Cell Spreading and Block Prion Replication.", "journal": "Scientific reports", "date": "2017-08-30", "authors": "Auli\u0107 Suzana, Masperone Lara, Narkiewicz Joanna, Isopi Elisa, Bistaffa Edoardo, Ambrosetti Elena, Pastore Beatrice, De Cecco Elena, Scaini Denis, Zago Paola, Moda Fabio, Tagliavini Fabrizio, Legname Giuseppe", "reference": { "type": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.28855681", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel panel of \u03b1-synuclein antibodies reveal distinctive staining profiles in synucleinopathies.", "journal": "PloS one", "date": "2017", "authors": "Dhillon Jess-Karan S, Riffe Cara, Moore Brenda D, Ran Yong, Chakrabarty Paramita, Golde Todd E, Giasson Benoit I", "reference": { "type": "PubMed", "id": "28910367", "url": "https://pubmed.ncbi.nlm.nih.gov/28910367" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28910367", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neuroprotective effect of chondroitin sulfate on SH\u2011SY5Y cells overexpressing wild\u2011type or A53T mutant \u03b1\u2011synuclein.", "journal": "Molecular medicine reports", "date": "2017-12", "authors": "Ju Chuanxia, Gao Jianjun, Hou Lin, Wang Lei, Zhang Fang, Sun Fusheng, Zhang Tingting, Xu Pingping, Shi Zhenyan, Hu Fang, Zhang Congxiao", "reference": { "type": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.28990084", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Detecting Alpha Synuclein Seeding Activity in Formaldehyde-Fixed MSA Patient Tissue by PMCA.", "journal": "Molecular neurobiology", "date": "2018-11", "authors": "Becker Katelyn, Wang Xinhe, Vander Stel Kayla, Chu Yaping, Kordower Jeffrey, Ma Jiyan", "reference": { "type": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.29589283", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Potent prion-like behaviors of pathogenic alpha-synuclein and evaluation of inactivation methods.", "journal": "Acta neuropathologica communications", "date": "2018", "authors": "Tarutani A, Arai T, Murayama S, Hisanaga SI, Hasegawa M", "reference": { "type": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.29669601", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Salidroside Promotes the Pathological \u03b1-Synuclein Clearance Through Ubiquitin-Proteasome System in SH-SY5Y Cells.", "journal": "Frontiers in pharmacology", "date": "2018", "authors": "Li Tao, Feng Yang, Yang Ruixin, Wu Leitao, Li Ruru, Huang Lu, Yang Qian, Chen Jianzong", "reference": { "type": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.29725300", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Methionine sulfoxide reductase A (MsrA) mediates the ubiquitination of 14-3-3 protein isotypes in brain.", "journal": "Free radical biology & medicine", "date": "2018", "authors": "Deng Y, Jiang B, Rankin CL, Toyo-Oka K, Richter ML, Maupin-Furlow JA, Moskovitz J", "reference": { "type": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.30096435", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cryo-EM of full-length alpha-synuclein reveals fibril polymorphs with a common structural kernel.", "journal": "Nat. Commun.", "date": "2018", "authors": "Li Binsen, Ge Peng, Murray Kevin A, Sheth Phorum, Zhang Meng, Nair Gayatri, Sawaya Michael R, Shin Woo Shik, Boyer David R, Ye Shulin, Eisenberg David S, Zhou Z Hong, Jiang Lin", "reference": { "type": "PubMed", "id": "30190461", "url": "https://pubmed.ncbi.nlm.nih.gov/30190461" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30190461", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear localization and phosphorylation modulate pathological effects of alpha-synuclein.", "journal": "Human molecular genetics", "date": "2019", "authors": "Pinho R, Paiva I, Jercic KG, Fonseca-Ornelas L, Gerhardt E, Fahlbusch C, Garcia-Esparcia P, Kerimoglu C, Pavlou MAS, Villar-Pique A, Szego E, Lopes da Fonseca T, Odoardi F, Soeroes S, Rego AC, Fischle W, Schwamborn JC, Meyer T, Kugler S, Ferrer I, Attems J, Fischer A, Becker S, Zweckstetter M, Borovecki F, Outeiro TF", "reference": { "type": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.30219847", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Development of an aggregate-selective, human-derived \u03b1-synuclein antibody BIIB054 that ameliorates disease phenotypes in Parkinson's disease models.", "journal": "Neurobiology of disease", "date": "2019-04", "authors": "Weihofen Andreas, Liu YuTing, Arndt Joseph W, Huy Christian, Quan Chao, Smith Benjamin A, Baeriswyl Jean-Luc, Cavegn Nicole, Senn Luzia, Su Lihe, Marsh Galina, Auluck Pavan K, Montrasio Fabio, Nitsch Roger M, Hirst Warren D, Cedarbaum Jesse M, Pepinsky R Blake, Grimm Jan, Weinreb Paul H", "reference": { "type": "PubMed", "id": "30381260", "url": "https://pubmed.ncbi.nlm.nih.gov/30381260" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30381260", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Soluble \u03b1-synuclein facilitates priming and fusion by releasing Ca2+ from the thapsigargin-sensitive Ca2+ pool in PC12 cells.", "journal": "Journal of cell science", "date": "2018-11-29", "authors": "Huang Chien-Chang, Chiu Tai-Yu, Lee Tzu-Ying, Hsieh Hsin-Jui, Lin Chung-Chih, Kao Lung-Sen", "reference": { "type": "PubMed", "id": "30404828", "url": "https://pubmed.ncbi.nlm.nih.gov/30404828" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30404828", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Parkinson's disease and multiple system atrophy have distinct \u03b1-synuclein seed characteristics.", "journal": "The Journal of biological chemistry", "date": "2019-01-18", "authors": "Yamasaki Tritia R, Holmes Brandon B, Furman Jennifer L, Dhavale Dhruva D, Su Bryant W, Song Eun-Suk, Cairns Nigel J, Kotzbauer Paul T, Diamond Marc I", "reference": { "type": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.30478174", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Naturally occurring antibodies isolated from PD patients inhibit synuclein seeding in vitro and recognize Lewy pathology.", "journal": "Acta neuropathologica", "date": "2019-05", "authors": "Li Xinyi, Koudstaal Wouter, Fletcher Lauren, Costa Martha, van Winsen Margot, Siregar Berdien, Ingan\u00e4s Hanna, Kim Julie, Keogh Elissa, Macedo Jeremy, Holland Trevin, Perry Stuart, Bard Frederique, Hoozemans Jeroen J, Goudsmit Jaap, Apetri Adrian, Pascual Gabriel", "reference": { "type": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" }, { "start_pos": 87, "end_pos": 87, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "28195695", "url": "https://pubmed.ncbi.nlm.nih.gov/28195695" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" } ], "site_lbl": "Ser87", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.30805666", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alpha-synuclein suppresses mitochondrial protease ClpP to trigger mitochondrial oxidative damage and neurotoxicity.", "journal": "Acta neuropathologica", "date": "2019", "authors": "Hu D, Sun X, Liao X, Zhang X, Zarabi S, Schimmer A, Hong Y, Ford C, Luo Y, Qi X", "reference": { "type": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.30877431", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential Aggregation and Phosphorylation of Alpha Synuclein in Membrane Compartments Associated With Parkinson Disease.", "journal": "Frontiers in neuroscience", "date": "2019", "authors": "Canerina-Amaro Ana, Pereda Daniel, Diaz Mario, Rodriguez-Barreto Deiene, Casa\u00f1as-S\u00e1nchez Ver\u00f3nica, Heffer Marija, Garcia-Esparcia Paula, Ferrer Isidro, Puertas-Avenda\u00f1o Ricardo, Marin Raquel", "reference": { "type": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.31068782", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Real-time Quaking-induced Conversion Analysis of Prion-like Seeding Activity of Pathological alpha-Synuclein].", "journal": "Yakugaku zasshi : Journal of the Pharmaceutical Society of Japan", "date": "2019", "authors": "Sano K", "reference": { "type": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.31257259", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phospho-S129 Alpha-Synuclein Is Present in Human Plasma but Not in Cerebrospinal Fluid as Determined by an Ultrasensitive Immunoassay.", "journal": "Frontiers in neuroscience", "date": "2019", "authors": "Cariulo Cristina, Martufi Paola, Verani Margherita, Azzollini Lucia, Bruni Giordana, Weiss Andreas, Deguire Sean M, Lashuel Hilal A, Scaricamazza Eugenia, Sancesario Giulia Maria, Schirinzi Tommaso, Mercuri Nicola Biagio, Sancesario Giuseppe, Caricasole Andrea, Petricca Lara", "reference": { "type": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.31507364", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of nSMase2 Reduces the Transfer of Oligomeric \u03b1-Synuclein Irrespective of Hypoxia.", "journal": "Frontiers in molecular neuroscience", "date": "2019", "authors": "Sackmann Valerie, Sinha Maitrayee Sardar, Sackmann Christopher, Civitelli Livia, Bergstr\u00f6m Joakim, Ansell-Schultz Anna, Hallbeck Martin", "reference": { "type": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.31555088", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "O-GlcNAcylation of truncated NAC segment alters peptide-dependent effects on alpha-synuclein aggregation.", "journal": "Bioorganic chemistry", "date": "2020", "authors": "Ryan P, Xu MM, Davey AK, Kassiou M, Mellick GD, Rudrawar S", "reference": { "type": "PubMed", "id": "31753312", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 42, "start_aa": "Ser", "end_pos": 42, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser42", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 44, "start_aa": "Thr", "end_pos": 44, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr44", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 54, "start_aa": "Thr", "end_pos": 54, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr54", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" }, { "id": "P37840", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P37840" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 59, "start_aa": "Thr", "end_pos": 59, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr59", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 64, "start_aa": "Thr", "end_pos": 64, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr64", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" }, { "id": "P37840", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P37840" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 75, "start_aa": "Thr", "end_pos": 75, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr75", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 81, "start_aa": "Thr", "end_pos": 81, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr81", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P37840-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 87, "start_aa": "Ser", "end_pos": 87, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser87", "evidence": [ { "id": "39082221", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39082221" }, { "id": "P37840", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P37840" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "28657654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28657654" }, { "id": "41146299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/41146299" }, { "id": "31753312", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31753312" }, { "id": "18984734", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18984734" }, { "id": "40596516", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40596516" }, { "id": "35254053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35254053" }, { "id": "38351230", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38351230" }, { "id": "38347213", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38347213" }, { "id": "38047498", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38047498" }, { "id": "P37840", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P37840" }, { "id": "2893", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2893" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01011", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.31753312", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 9 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 9 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 9 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 9 }, { "field": "exact_o_linked_sites", "count": 9 }, { "field": "exact_o_linked_glycan_sites", "count": 9 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 9 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 9 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 9 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 9 }, { "field": "exact_o_linked_sites", "count": 9 }, { "field": "exact_o_linked_glycan_sites", "count": 9 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of alpha-synuclein seeded fibril formation and toxicity by herbal medicinal extracts.", "journal": "BMC complementary medicine and therapies", "date": "2020-03-06", "authors": "Ardah Mustafa T, Ghanem Simona S, Abdulla Sara A, Lv Guohua, Emara Mohamed M, Paleologou Katerina E, Vaikath Nishant N, Lu Jia-Hong, Li Min, Vekrellis Konstantinos, Eliezer David, El-Agnaf Omar M A", "reference": { "type": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.32143619", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Investigating the Effects of O-GlcNAc Modifications in Parkinson's Disease Using Semisynthetic \u03b1-Synuclein.", "journal": "Methods in molecular biology (Clifton, N.J.)", "date": "2020", "authors": "Galesic Ana, Pratt Matthew R", "reference": { "type": "PubMed", "id": "32144674", "url": "https://pubmed.ncbi.nlm.nih.gov/32144674" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "automatic_literature_mining", "site_category_dict": { "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "28487126", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28487126" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "28673834", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28673834" }, { "id": "32144674", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32144674" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "000000000000000010000.00000000001000.00.01001", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.32144674", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] }, { "title": "The structural differences between patient-derived \u03b1-synuclein strains dictate characteristics of Parkinson's disease, multiple system atrophy and dementia with Lewy bodies.", "journal": "Acta neuropathologica", "date": "2020-06", "authors": "Van der Perren Anke, Gelders G\u00e9raldine, Fenyi Alexis, Bousset Luc, Brito Filipa, Peelaerts Wouter, Van den Haute Chris, Gentleman Steve, Melki Ronald, Baekelandt Veerle", "reference": { "type": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.32356200", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of distinct pathological signatures induced by patient-derived \u03b1-synuclein structures in nonhuman primates.", "journal": "Science advances", "date": "2020-05", "authors": "Bourdenx M, Nioche A, Dovero S, Arotcarena M-L, Camus S, Porras G, Thiolat M-L, Rougier N P, Prigent A, Aubert P, Bohic S, Sandt C, Laferri\u00e8re F, Doudnikoff E, Kruse N, Mollenhauer B, Novello S, Morari M, Leste-Lasserre T, Damas I Trigo, Goillandeau M, Perier C, Estrada C, Garcia-Carrillo N, Recasens A, Vaikath N N, El-Agnaf O M A, Herrero M T, Derkinderen P, Vila M, Obeso J A, Dehay B, Bezard E", "reference": { "type": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.32426502", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of alpha-synuclein phosphorylation at Serine 129 in methamphetamine-induced neurotoxicity in vitro and in vivo.", "journal": "Neuroreport", "date": "2020-08-05", "authors": "Ding Jiuyang, Wang Yue, Huang Jian, Lian Yongling, Meng Yunle, Li Chen, He Yitong, Qiu Pingming", "reference": { "type": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.32568772", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pathogenic Mutations Differentially Regulate Cell-to-Cell Transmission of \u03b1-Synuclein.", "journal": "Frontiers in cellular neuroscience", "date": "2020", "authors": "Guan Yuan, Zhao Xiaofang, Liu Fengwei, Yan Shuxin, Wang Yalong, Du Cuilian, Cui Xiuyu, Li Rena, Zhang Claire Xi", "reference": { "type": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.32595456", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Death-associated Protein Kinase 1 Phosphorylates \u03b1-Synuclein at Ser129 and Exacerbates Rotenone-induced Toxic Aggregation of \u03b1-Synuclein in Dopaminergic SH-SY5Y Cells.", "journal": "Experimental neurobiology", "date": "2020-06-30", "authors": "Shin Woo Hyun, Chung Kwang Chul", "reference": { "type": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK2, PLK2, CK2, CK1 and GRK5", "evidence": [ { "database": "UniProtKB", "id": "P37840", "url": "https://www.uniprot.org/uniprotkb/P37840" }, { "database": "iPTMnet", "id": "P37840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37840" }, { "database": "PubMed", "id": "10617630", "url": "https://pubmed.ncbi.nlm.nih.gov/10617630" }, { "database": "PubMed", "id": "10852916", "url": "https://pubmed.ncbi.nlm.nih.gov/10852916" }, { "database": "IEDB", "id": "P37840", "url": "https://www.iedb.org/epitope/P37840" }, { "database": "PubMed", "id": "34648304", "url": "https://pubmed.ncbi.nlm.nih.gov/34648304" }, { "database": "PubMed", "id": "17868672", "url": "https://pubmed.ncbi.nlm.nih.gov/17868672" }, { "database": "PubMed", "id": "18451726", "url": "https://pubmed.ncbi.nlm.nih.gov/18451726" }, { "database": "PubMed", "id": "16092093", "url": "https://pubmed.ncbi.nlm.nih.gov/16092093" }, { "database": "PubMed", "id": "17146290", "url": "https://pubmed.ncbi.nlm.nih.gov/17146290" }, { "database": "PubMed", "id": "18562315", "url": "https://pubmed.ncbi.nlm.nih.gov/18562315" }, { "database": "PubMed", "id": "19203374", "url": "https://pubmed.ncbi.nlm.nih.gov/19203374" }, { "database": "PubMed", "id": "19410557", "url": "https://pubmed.ncbi.nlm.nih.gov/19410557" }, { "database": "PubMed", "id": "19493164", "url": "https://pubmed.ncbi.nlm.nih.gov/19493164" }, { "database": "PubMed", "id": "19576176", "url": "https://pubmed.ncbi.nlm.nih.gov/19576176" }, { "database": "PubMed", "id": "19855133", "url": "https://pubmed.ncbi.nlm.nih.gov/19855133" }, { "database": "PubMed", "id": "19889641", "url": "https://pubmed.ncbi.nlm.nih.gov/19889641" }, { "database": "PubMed", "id": "20725866", "url": "https://pubmed.ncbi.nlm.nih.gov/20725866" }, { "database": "PubMed", "id": "20849899", "url": "https://pubmed.ncbi.nlm.nih.gov/20849899" }, { "database": "PubMed", "id": "21162130", "url": "https://pubmed.ncbi.nlm.nih.gov/21162130" }, { "database": "PubMed", "id": "21945393", "url": "https://pubmed.ncbi.nlm.nih.gov/21945393" }, { "database": "PubMed", "id": "22090514", "url": "https://pubmed.ncbi.nlm.nih.gov/22090514" }, { "database": "PubMed", "id": "22357655", "url": "https://pubmed.ncbi.nlm.nih.gov/22357655" }, { "database": "PubMed", "id": "22860160", "url": "https://pubmed.ncbi.nlm.nih.gov/22860160" }, { "database": "PubMed", "id": "22892036", "url": "https://pubmed.ncbi.nlm.nih.gov/22892036" }, { "database": "PubMed", "id": "23314528", "url": "https://pubmed.ncbi.nlm.nih.gov/23314528" }, { "database": "PubMed", "id": "23576548", "url": "https://pubmed.ncbi.nlm.nih.gov/23576548" }, { "database": "PubMed", "id": "23677647", "url": "https://pubmed.ncbi.nlm.nih.gov/23677647" }, { "database": "PubMed", "id": "23681749", "url": "https://pubmed.ncbi.nlm.nih.gov/23681749" }, { "database": "PubMed", "id": "24434619", "url": "https://pubmed.ncbi.nlm.nih.gov/24434619" }, { "database": "PubMed", "id": "24860424", "url": "https://pubmed.ncbi.nlm.nih.gov/24860424" }, { "database": "PubMed", "id": "25109238", "url": "https://pubmed.ncbi.nlm.nih.gov/25109238" }, { "database": "PubMed", "id": "25394490", "url": "https://pubmed.ncbi.nlm.nih.gov/25394490" }, { "database": "PubMed", "id": "25452767", "url": "https://pubmed.ncbi.nlm.nih.gov/25452767" }, { "database": "PubMed", "id": "25589666", "url": "https://pubmed.ncbi.nlm.nih.gov/25589666" }, { "database": "PubMed", "id": "25637461", "url": "https://pubmed.ncbi.nlm.nih.gov/25637461" }, { "database": "PubMed", "id": "25657004", "url": "https://pubmed.ncbi.nlm.nih.gov/25657004" }, { "database": "PubMed", "id": "26114655", "url": "https://pubmed.ncbi.nlm.nih.gov/26114655" }, { "database": "PubMed", "id": "26220523", "url": "https://pubmed.ncbi.nlm.nih.gov/26220523" }, { "database": "PubMed", "id": "26306801", "url": "https://pubmed.ncbi.nlm.nih.gov/26306801" }, { "database": "PubMed", "id": "26346361", "url": "https://pubmed.ncbi.nlm.nih.gov/26346361" }, { "database": "PubMed", "id": "26453202", "url": "https://pubmed.ncbi.nlm.nih.gov/26453202" }, { "database": "PubMed", "id": "26475692", "url": "https://pubmed.ncbi.nlm.nih.gov/26475692" }, { "database": "PubMed", "id": "26666838", "url": "https://pubmed.ncbi.nlm.nih.gov/26666838" }, { "database": "PubMed", "id": "26719332", "url": "https://pubmed.ncbi.nlm.nih.gov/26719332" }, { "database": "PubMed", "id": "26782965", "url": "https://pubmed.ncbi.nlm.nih.gov/26782965" }, { "database": "PubMed", "id": "27003784", "url": "https://pubmed.ncbi.nlm.nih.gov/27003784" }, { "database": "PubMed", "id": "27030050", "url": "https://pubmed.ncbi.nlm.nih.gov/27030050" }, { "database": "PubMed", "id": "27322472", "url": "https://pubmed.ncbi.nlm.nih.gov/27322472" }, { "database": "PubMed", "id": "27341336", "url": "https://pubmed.ncbi.nlm.nih.gov/27341336" }, { "database": "PubMed", "id": "27863657", "url": "https://pubmed.ncbi.nlm.nih.gov/27863657" }, { "database": "PubMed", "id": "27938414", "url": "https://pubmed.ncbi.nlm.nih.gov/27938414" }, { "database": "PubMed", "id": "28171705", "url": "https://pubmed.ncbi.nlm.nih.gov/28171705" }, { "database": "PubMed", "id": "28550528", "url": "https://pubmed.ncbi.nlm.nih.gov/28550528" }, { "database": "PubMed", "id": "28855681", "url": "https://pubmed.ncbi.nlm.nih.gov/28855681" }, { "database": "PubMed", "id": "28877262", "url": "https://pubmed.ncbi.nlm.nih.gov/28877262" }, { "database": "PubMed", "id": "28990084", "url": "https://pubmed.ncbi.nlm.nih.gov/28990084" }, { "database": "PubMed", "id": "29589283", "url": "https://pubmed.ncbi.nlm.nih.gov/29589283" }, { "database": "PubMed", "id": "29669601", "url": "https://pubmed.ncbi.nlm.nih.gov/29669601" }, { "database": "PubMed", "id": "29725300", "url": "https://pubmed.ncbi.nlm.nih.gov/29725300" }, { "database": "PubMed", "id": "30096435", "url": "https://pubmed.ncbi.nlm.nih.gov/30096435" }, { "database": "PubMed", "id": "30219847", "url": "https://pubmed.ncbi.nlm.nih.gov/30219847" }, { "database": "PubMed", "id": "30478174", "url": "https://pubmed.ncbi.nlm.nih.gov/30478174" }, { "database": "PubMed", "id": "30805666", "url": "https://pubmed.ncbi.nlm.nih.gov/30805666" }, { "database": "PubMed", "id": "30877431", "url": "https://pubmed.ncbi.nlm.nih.gov/30877431" }, { "database": "PubMed", "id": "31068782", "url": "https://pubmed.ncbi.nlm.nih.gov/31068782" }, { "database": "PubMed", "id": "31257259", "url": "https://pubmed.ncbi.nlm.nih.gov/31257259" }, { "database": "PubMed", "id": "31507364", "url": "https://pubmed.ncbi.nlm.nih.gov/31507364" }, { "database": "PubMed", "id": "31555088", "url": "https://pubmed.ncbi.nlm.nih.gov/31555088" }, { "database": "PubMed", "id": "32143619", "url": "https://pubmed.ncbi.nlm.nih.gov/32143619" }, { "database": "PubMed", "id": "32356200", "url": "https://pubmed.ncbi.nlm.nih.gov/32356200" }, { "database": "PubMed", "id": "32426502", "url": "https://pubmed.ncbi.nlm.nih.gov/32426502" }, { "database": "PubMed", "id": "32568772", "url": "https://pubmed.ncbi.nlm.nih.gov/32568772" }, { "database": "PubMed", "id": "32595456", "url": "https://pubmed.ncbi.nlm.nih.gov/32595456" }, { "database": "PubMed", "id": "32624505", "url": "https://pubmed.ncbi.nlm.nih.gov/32624505" }, { "database": "PubMed", "id": "32971383", "url": "https://pubmed.ncbi.nlm.nih.gov/32971383" }, { "database": "PubMed", "id": "33138150", "url": "https://pubmed.ncbi.nlm.nih.gov/33138150" }, { "database": "PubMed", "id": "33357908", "url": "https://pubmed.ncbi.nlm.nih.gov/33357908" }, { "database": "PubMed", "id": "33718373", "url": "https://pubmed.ncbi.nlm.nih.gov/33718373" }, { "database": "PubMed", "id": "34220490", "url": "https://pubmed.ncbi.nlm.nih.gov/34220490" }, { "database": "PubMed", "id": "34973339", "url": "https://pubmed.ncbi.nlm.nih.gov/34973339" }, { "database": "PubMed", "id": "34974168", "url": "https://pubmed.ncbi.nlm.nih.gov/34974168" }, { "database": "PubMed", "id": "35682892", "url": "https://pubmed.ncbi.nlm.nih.gov/35682892" }, { "database": "PubMed", "id": "35853942", "url": "https://pubmed.ncbi.nlm.nih.gov/35853942" }, { "database": "PubMed", "id": "35905887", "url": "https://pubmed.ncbi.nlm.nih.gov/35905887" }, { "database": "PubMed", "id": "36114228", "url": "https://pubmed.ncbi.nlm.nih.gov/36114228" }, { "database": "PubMed", "id": "36304930", "url": "https://pubmed.ncbi.nlm.nih.gov/36304930" }, { "database": "PubMed", "id": "11813001", "url": "https://pubmed.ncbi.nlm.nih.gov/11813001" }, { "database": "PubMed", "id": "24936070", "url": "https://pubmed.ncbi.nlm.nih.gov/24936070" } ], "site_lbl": "Ser129", "uniprot_canonical_ac": "P37840-1" } ], "record_id": "pubmed.32624505", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]