[ { "title": "Distribution, levels and phosphorylation of Raf-1 in Alzheimer's disease.", "journal": "Journal of neurochemistry", "date": "2006", "authors": "Mei M, Su B, Harrison K, Chao M, Siedlak SL, Previll LA, Jackson L, Cai DX, Zhu X", "reference": { "type": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 340, "end_pos": 340, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr340", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 341, "end_pos": 341, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr341", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.17064357", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphatase and feedback regulation of Raf-1 signaling.", "journal": "Cell Cycle", "date": "2007", "authors": "Dhillon Amardeep S, von Kriegsheim Alex, Grindlay Joan, Kolch Walter", "reference": { "type": "PubMed", "id": "17218791", "url": "https://pubmed.ncbi.nlm.nih.gov/17218791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17218791", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Raf-1 kinase mediates adenylyl cyclase sensitization by TNF-alpha in human airway smooth muscle cells.", "journal": "American journal of physiology. Lung cellular and molecular physiology", "date": "2007", "authors": "Osawa Y, Yim PD, Xu D, Panettieri RA, Emala CW", "reference": { "type": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.17277048", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hepatitis B virus X protein stimulates the mitochondrial translocation of Raf-1 via oxidative stress.", "journal": "Journal of virology", "date": "2007", "authors": "Chen J, Siddiqui A", "reference": { "type": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 339, "end_pos": 339, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2 and PAK3", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "9234708", "url": "https://pubmed.ncbi.nlm.nih.gov/9234708" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" } ], "site_lbl": "Ser339", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.17428866", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Progesterone increases csk homologous kinase in HMC-1560 human mast cells and reduces cell proliferation.", "journal": "Journal of cellular biochemistry", "date": "2007", "authors": "Belot MP, Abdennebi-Najar L, Gaudin F, Emilie D, Machelon V", "reference": { "type": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 340, "end_pos": 340, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr340", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 341, "end_pos": 341, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr341", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.17492661", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zinc-dependent suppression of TNF-alpha production is mediated by protein kinase A-induced inhibition of Raf-1, I kappa B kinase beta, and NF-kappa B.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2007", "authors": "von Bulow V, Dubben S, Engelhardt G, Hebel S, Plumakers B, Heine H, Rink L, Haase H", "reference": { "type": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.17785857", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Calcitonin targets extracellular signal-regulated kinase signaling pathway in human cancers.", "journal": "Journal of molecular endocrinology", "date": "2007", "authors": "Nakamura M, Han B, Nishishita T, Bai Y, Kakudo K", "reference": { "type": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.18055485", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GRP78 and Raf-1 cooperatively confer resistance to endoplasmic reticulum stress-induced apoptosis.", "journal": "Journal of cellular physiology", "date": "2008", "authors": "Shu CW, Sun FC, Cho JH, Lin CC, Liu PF, Chen PY, Chang MD, Fu HW, Lai YK", "reference": { "type": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 340, "end_pos": 340, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr340", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.18064632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Non-steroidal anti-inflammatory drugs suppress the ERK signaling pathway via block of Ras/c-Raf interaction and activation of MAP kinase phosphatases.", "journal": "Cellular signalling", "date": "2008", "authors": "Pan MR, Chang HC, Hung WC", "reference": { "type": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.18374541", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of Ser338 phosphorylation for Raf-1 activation.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Zang M, Gong J, Luo L, Zhou J, Xiang X, Huang W, Huang Q, Luo X, Olbrot M, Peng Y, Chen C, Luo Z", "reference": { "type": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "Q13153-1", "kinase_gene_name": "PAK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "9234708", "url": "https://pubmed.ncbi.nlm.nih.gov/9234708" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 339, "end_pos": 339, "kinase_uniprot_canonical_ac": "Q13153-1", "kinase_gene_name": "PAK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" } ], "site_lbl": "Ser339", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.18775988", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lead acetate induces EGFR activation upstream of SFK and PKCalpha linkage to the Ras/Raf-1/ERK signaling.", "journal": "Toxicology and applied pharmacology", "date": "2009", "authors": "Wang CY, Wang YT, Tzeng DW, Yang JL", "reference": { "type": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.19133285", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ultrasound stimulates NF-kappaB activation and iNOS expression via the Ras/Raf/MEK/ERK signaling pathway in cultured preosteoblasts.", "journal": "Journal of cellular physiology", "date": "2009", "authors": "Hou CH, Lin J, Huang SC, Hou SM, Tang CH", "reference": { "type": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04206-1", "protein_name": "Transcription factor p65", "gene_name": "RELA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 276, "end_pos": 276, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by RPS6KA4 and RPS6KA5", "evidence": [ { "database": "UniProtKB", "id": "Q04206", "url": "https://www.uniprot.org/uniprotkb/Q04206" }, { "database": "PRO", "id": "Q04206", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q04206" }, { "database": "iPTMnet", "id": "Q04206", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04206" }, { "database": "PubMed", "id": "12628924", "url": "https://pubmed.ncbi.nlm.nih.gov/12628924" }, { "database": "PubMed", "id": "14711835", "url": "https://pubmed.ncbi.nlm.nih.gov/14711835" }, { "database": "PubMed", "id": "14713228", "url": "https://pubmed.ncbi.nlm.nih.gov/14713228" }, { "database": "PubMed", "id": "16806820", "url": "https://pubmed.ncbi.nlm.nih.gov/16806820" }, { "database": "PubMed", "id": "16928747", "url": "https://pubmed.ncbi.nlm.nih.gov/16928747" }, { "database": "PubMed", "id": "17008051", "url": "https://pubmed.ncbi.nlm.nih.gov/17008051" }, { "database": "PubMed", "id": "17317104", "url": "https://pubmed.ncbi.nlm.nih.gov/17317104" }, { "database": "PubMed", "id": "17397830", "url": "https://pubmed.ncbi.nlm.nih.gov/17397830" }, { "database": "PubMed", "id": "17548605", "url": "https://pubmed.ncbi.nlm.nih.gov/17548605" }, { "database": "PubMed", "id": "17576778", "url": "https://pubmed.ncbi.nlm.nih.gov/17576778" }, { "database": "PubMed", "id": "17617622", "url": "https://pubmed.ncbi.nlm.nih.gov/17617622" }, { "database": "PubMed", "id": "17692505", "url": "https://pubmed.ncbi.nlm.nih.gov/17692505" }, { "database": "PubMed", "id": "17911635", "url": "https://pubmed.ncbi.nlm.nih.gov/17911635" }, { "database": "PubMed", "id": "17991436", "url": "https://pubmed.ncbi.nlm.nih.gov/17991436" }, { "database": "PubMed", "id": "18062909", "url": "https://pubmed.ncbi.nlm.nih.gov/18062909" }, { "database": "PubMed", "id": "18070609", "url": "https://pubmed.ncbi.nlm.nih.gov/18070609" }, { "database": "PubMed", "id": "18178962", "url": "https://pubmed.ncbi.nlm.nih.gov/18178962" }, { "database": "PubMed", "id": "18241676", "url": "https://pubmed.ncbi.nlm.nih.gov/18241676" }, { "database": "PubMed", "id": "18258304", "url": "https://pubmed.ncbi.nlm.nih.gov/18258304" }, { "database": "PubMed", "id": "18276112", "url": "https://pubmed.ncbi.nlm.nih.gov/18276112" }, { "database": "PubMed", "id": "18310089", "url": "https://pubmed.ncbi.nlm.nih.gov/18310089" }, { "database": "PubMed", "id": "18424438", "url": "https://pubmed.ncbi.nlm.nih.gov/18424438" }, { "database": "PubMed", "id": "18501560", "url": "https://pubmed.ncbi.nlm.nih.gov/18501560" }, { "database": "PubMed", "id": "18621420", "url": "https://pubmed.ncbi.nlm.nih.gov/18621420" }, { "database": "PubMed", "id": "18627520", "url": "https://pubmed.ncbi.nlm.nih.gov/18627520" }, { "database": "PubMed", "id": "19038492", "url": "https://pubmed.ncbi.nlm.nih.gov/19038492" }, { "database": "PubMed", "id": "19135383", "url": "https://pubmed.ncbi.nlm.nih.gov/19135383" }, { "database": "PubMed", "id": "19197368", "url": "https://pubmed.ncbi.nlm.nih.gov/19197368" }, { "database": "PubMed", "id": "19201908", "url": "https://pubmed.ncbi.nlm.nih.gov/19201908" }, { "database": "PubMed", "id": "19285061", "url": "https://pubmed.ncbi.nlm.nih.gov/19285061" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19668231", "url": "https://pubmed.ncbi.nlm.nih.gov/19668231" }, { "database": "PubMed", "id": "19910110", "url": "https://pubmed.ncbi.nlm.nih.gov/19910110" }, { "database": "PubMed", "id": "19911008", "url": "https://pubmed.ncbi.nlm.nih.gov/19911008" }, { "database": "PubMed", "id": "19933278", "url": "https://pubmed.ncbi.nlm.nih.gov/19933278" }, { "database": "PubMed", "id": "20065107", "url": "https://pubmed.ncbi.nlm.nih.gov/20065107" }, { "database": "PubMed", "id": "20138622", "url": "https://pubmed.ncbi.nlm.nih.gov/20138622" }, { "database": "PubMed", "id": "20194077", "url": "https://pubmed.ncbi.nlm.nih.gov/20194077" }, { "database": "PubMed", "id": "20204068", "url": "https://pubmed.ncbi.nlm.nih.gov/20204068" }, { "database": "PubMed", "id": "20406326", "url": "https://pubmed.ncbi.nlm.nih.gov/20406326" }, { "database": "PubMed", "id": "20562110", "url": "https://pubmed.ncbi.nlm.nih.gov/20562110" }, { "database": "PubMed", "id": "20639196", "url": "https://pubmed.ncbi.nlm.nih.gov/20639196" }, { "database": "PubMed", "id": "20686703", "url": "https://pubmed.ncbi.nlm.nih.gov/20686703" }, { "database": "PubMed", "id": "21182083", "url": "https://pubmed.ncbi.nlm.nih.gov/21182083" }, { "database": "PubMed", "id": "21334436", "url": "https://pubmed.ncbi.nlm.nih.gov/21334436" }, { "database": "PubMed", "id": "21492457", "url": "https://pubmed.ncbi.nlm.nih.gov/21492457" }, { "database": "PubMed", "id": "21556136", "url": "https://pubmed.ncbi.nlm.nih.gov/21556136" }, { "database": "PubMed", "id": "21765477", "url": "https://pubmed.ncbi.nlm.nih.gov/21765477" }, { "database": "PubMed", "id": "21935477", "url": "https://pubmed.ncbi.nlm.nih.gov/21935477" }, { "database": "PubMed", "id": "22216091", "url": "https://pubmed.ncbi.nlm.nih.gov/22216091" }, { "database": "PubMed", "id": "22733812", "url": "https://pubmed.ncbi.nlm.nih.gov/22733812" }, { "database": "PubMed", "id": "22778400", "url": "https://pubmed.ncbi.nlm.nih.gov/22778400" }, { "database": "PubMed", "id": "22996371", "url": "https://pubmed.ncbi.nlm.nih.gov/22996371" }, { "database": "PubMed", "id": "23118497", "url": "https://pubmed.ncbi.nlm.nih.gov/23118497" }, { "database": "PubMed", "id": "23536830", "url": "https://pubmed.ncbi.nlm.nih.gov/23536830" }, { "database": "PubMed", "id": "23784084", "url": "https://pubmed.ncbi.nlm.nih.gov/23784084" }, { "database": "PubMed", "id": "23812431", "url": "https://pubmed.ncbi.nlm.nih.gov/23812431" }, { "database": "PubMed", "id": "24019758", "url": "https://pubmed.ncbi.nlm.nih.gov/24019758" }, { "database": "PubMed", "id": "24023820", "url": "https://pubmed.ncbi.nlm.nih.gov/24023820" }, { "database": "PubMed", "id": "24216290", "url": "https://pubmed.ncbi.nlm.nih.gov/24216290" }, { "database": "PubMed", "id": "24349042", "url": "https://pubmed.ncbi.nlm.nih.gov/24349042" }, { "database": "PubMed", "id": "24621265", "url": "https://pubmed.ncbi.nlm.nih.gov/24621265" }, { "database": "PubMed", "id": "24957606", "url": "https://pubmed.ncbi.nlm.nih.gov/24957606" }, { "database": "PubMed", "id": "25055998", "url": "https://pubmed.ncbi.nlm.nih.gov/25055998" }, { "database": "PubMed", "id": "25197166", "url": "https://pubmed.ncbi.nlm.nih.gov/25197166" }, { "database": "PubMed", "id": "26305102", "url": "https://pubmed.ncbi.nlm.nih.gov/26305102" }, { "database": "PubMed", "id": "26463037", "url": "https://pubmed.ncbi.nlm.nih.gov/26463037" }, { "database": "PubMed", "id": "27221592", "url": "https://pubmed.ncbi.nlm.nih.gov/27221592" }, { "database": "PubMed", "id": "27721021", "url": "https://pubmed.ncbi.nlm.nih.gov/27721021" }, { "database": "PubMed", "id": "28317833", "url": "https://pubmed.ncbi.nlm.nih.gov/28317833" }, { "database": "PubMed", "id": "29601651", "url": "https://pubmed.ncbi.nlm.nih.gov/29601651" }, { "database": "PubMed", "id": "29867198", "url": "https://pubmed.ncbi.nlm.nih.gov/29867198" }, { "database": "PubMed", "id": "30057418", "url": "https://pubmed.ncbi.nlm.nih.gov/30057418" }, { "database": "PubMed", "id": "30814284", "url": "https://pubmed.ncbi.nlm.nih.gov/30814284" }, { "database": "PubMed", "id": "30995931", "url": "https://pubmed.ncbi.nlm.nih.gov/30995931" }, { "database": "PubMed", "id": "33459422", "url": "https://pubmed.ncbi.nlm.nih.gov/33459422" }, { "database": "PubMed", "id": "36264688", "url": "https://pubmed.ncbi.nlm.nih.gov/36264688" }, { "database": "PubMed", "id": "36413416", "url": "https://pubmed.ncbi.nlm.nih.gov/36413416" }, { "database": "PubMed", "id": "9660950", "url": "https://pubmed.ncbi.nlm.nih.gov/9660950" } ], "site_lbl": "Ser276", "uniprot_canonical_ac": "Q04206-1" } ], "record_id": "pubmed.19288477", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The C-terminus of Raf-1 acts as a 14-3-3-dependent activation switch.", "journal": "Cellular signalling", "date": "2009", "authors": "Dhillon AS, Yip YY, Grindlay GJ, Pakay JL, Dangers M, Hillmann M, Clark W, Pitt A, Mischak H, Kolch W", "reference": { "type": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.19595761", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Involvement of Ras/Raf-1/p44/42 MAPK in YC-1-induced cyclooxygenase-2 expression in human pulmonary epithelial cells.", "journal": "Pharmacological research", "date": "2009", "authors": "Chang MS, Chen BC, Weng CM, Lee WS, Lin CH", "reference": { "type": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.19717011", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kinase suppressor of Ras transphosphorylates c-Raf-1.", "journal": "Biochemical and biophysical research communications", "date": "2009", "authors": "Zafrullah M, Yin X, Haimovitz-Friedman A, Fuks Z, Kolesnick R", "reference": { "type": "PubMed", "id": "19766101", "url": "https://pubmed.ncbi.nlm.nih.gov/19766101" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 269, "end_pos": 269, "kinase_uniprot_canonical_ac": "Q8IVT5-1", "kinase_gene_name": "KSR1", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "19766101", "url": "https://pubmed.ncbi.nlm.nih.gov/19766101" }, { "database": "PubMed", "id": "11134016", "url": "https://pubmed.ncbi.nlm.nih.gov/11134016" } ], "site_lbl": "Thr269", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 269, "end_pos": 269, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "7477354", "url": "https://pubmed.ncbi.nlm.nih.gov/7477354" }, { "database": "PubMed", "id": "15642359", "url": "https://pubmed.ncbi.nlm.nih.gov/15642359" }, { "database": "PubMed", "id": "19766101", "url": "https://pubmed.ncbi.nlm.nih.gov/19766101" } ], "site_lbl": "Thr269", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.19766101", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prostaglandin E2 activates cAMP response element-binding protein in glioma cells via a signaling pathway involving PKA-dependent inhibition of ERK.", "journal": "Prostaglandins & other lipid mediators", "date": "2010", "authors": "Bidwell P, Joh K, Leaver HA, Rizzo MT", "reference": { "type": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.20015475", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A homogenous luminescent proximity assay for 14-3-3 interactions with both phosphorylated and nonphosphorylated client peptides.", "journal": "Current chemical genomics", "date": "2008", "authors": "Du Y, Khuri FR, Fu H", "reference": { "type": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.20161842", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Akt isoform-specific inhibition of MDA-MB-231 cell proliferation.", "journal": "Cellular signalling", "date": "2011", "authors": "Yang W, Ju JH, Lee KM, Shin I", "reference": { "type": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.20688159", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of Erk1/2 activation by osteopontin in PC3 human prostate cancer cells.", "journal": "Molecular cancer", "date": "2010", "authors": "Robertson BW, Bonsal L, Chellaiah MA", "reference": { "type": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.20868520", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Akt-mediated signaling is induced by cytokines and cyclic adenosine monophosphate and suppresses hepatocyte inducible nitric oxide synthase expression independent of MAPK P44/42.", "journal": "Biochimica et biophysica acta", "date": "2011", "authors": "Zhang B, Li S, Harbrecht BG", "reference": { "type": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.20934465", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aliphatic acetogenin constituents of avocado fruits inhibit human oral cancer cell proliferation by targeting the EGFR/RAS/RAF/MEK/ERK1/2 pathway.", "journal": "Biochemical and biophysical research communications", "date": "2011", "authors": "D'Ambrosio SM, Han C, Pan L, Kinghorn AD, Ding H", "reference": { "type": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.21596018", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Src inhibitors, PP2 and dasatinib, increase retinoic acid-induced association of Lyn and c-Raf (S259) and enhance MAPK-dependent differentiation of myeloid leukemia cells.", "journal": "Leukemia", "date": "2012", "authors": "Congleton J, MacDonald R, Yen A", "reference": { "type": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.22182854", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hybrid cells derived from breast epithelial cell/breast cancer cell fusion events show a differential RAF-AKT crosstalk.", "journal": "Cell communication and signaling : CCS", "date": "2012", "authors": "Ozel C, Seidel J, Meyer-Staeckling S, Brandt BH, Niggemann B, Zanker KS, Dittmar T", "reference": { "type": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.22487193", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Synergistic binding of the phosphorylated S233- and S259-binding sites of C-RAF to one 14-3-3zeta dimer.", "journal": "Journal of molecular biology", "date": "2012", "authors": "Molzan M, Ottmann C", "reference": { "type": "PubMed", "id": "22922483", "url": "https://pubmed.ncbi.nlm.nih.gov/22922483" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 233, "end_pos": 233, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "IEDB", "id": "P04049", "url": "https://www.iedb.org/epitope/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "32387766", "url": "https://pubmed.ncbi.nlm.nih.gov/32387766" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "22922483", "url": "https://pubmed.ncbi.nlm.nih.gov/22922483" } ], "site_lbl": "Ser233", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.22922483", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of cardiac hypertrophic signaling by prolyl isomerase Pin1.", "journal": "Circulation research", "date": "2013", "authors": "Toko H, Konstandin MH, Doroudgar S, Ormachea L, Joyo E, Joyo AY, Din S, Gude NA, Collins B, Volkers M, Thuerauf DJ, Glembotski CC, Chen CH, Lu KP, Muller OJ, Uchida T, Sussman MA", "reference": { "type": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.23487407", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endothelial RAF1/ERK activation regulates arterial morphogenesis.", "journal": "Blood", "date": "2013", "authors": "Deng Y, Larrivee B, Zhuang ZW, Atri D, Moraes F, Prahst C, Eichmann A, Simons M", "reference": { "type": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.23529931", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Src-family kinase inhibitor PP2 rescues inducible differentiation events in emergent retinoic acid-resistant myeloblastic leukemia cells.", "journal": "PloS one", "date": "2013", "authors": "Jensen HA, Styskal LE, Tasseff R, Bunaciu RP, Congleton J, Varner JD, Yen A", "reference": { "type": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 289, "end_pos": 289, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" } ], "site_lbl": "Ser289", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.23554907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hierarchical scaffolding of an ERK1/2 activation pathway.", "journal": "Cell communication and signaling : CCS", "date": "2013", "authors": "Vetterkind S, Poythress RH, Lin QQ, Morgan KG", "reference": { "type": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.23987506", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The HDAC inhibitor LBH589 induces ERK-dependent prometaphase arrest in prostate cancer via HDAC6 inactivation and down-regulation.", "journal": "PloS one", "date": "2013", "authors": "Chuang MJ, Wu ST, Tang SH, Lai XM, Lai HC, Hsu KH, Sun KH, Sun GH, Chang SY, Yu DS, Hsiao PW, Huang SM, Cha TL", "reference": { "type": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 216, "end_pos": 216, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK1, CHEK2, BRSK1, MAPK14 AND MARK3", "evidence": [ { "database": "UniProtKB", "id": "P30307", "url": "https://www.uniprot.org/uniprotkb/P30307" }, { "database": "iPTMnet", "id": "P30307", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30307" }, { "database": "PubMed", "id": "10391675", "url": "https://pubmed.ncbi.nlm.nih.gov/10391675" }, { "database": "PubMed", "id": "10435585", "url": "https://pubmed.ncbi.nlm.nih.gov/10435585" }, { "database": "PubMed", "id": "10444066", "url": "https://pubmed.ncbi.nlm.nih.gov/10444066" }, { "database": "PubMed", "id": "10681541", "url": "https://pubmed.ncbi.nlm.nih.gov/10681541" }, { "database": "PubMed", "id": "10744722", "url": "https://pubmed.ncbi.nlm.nih.gov/10744722" }, { "database": "PubMed", "id": "10786669", "url": "https://pubmed.ncbi.nlm.nih.gov/10786669" }, { "database": "PubMed", "id": "11027648", "url": "https://pubmed.ncbi.nlm.nih.gov/11027648" }, { "database": "PubMed", "id": "11551930", "url": "https://pubmed.ncbi.nlm.nih.gov/11551930" }, { "database": "PubMed", "id": "12569391", "url": "https://pubmed.ncbi.nlm.nih.gov/12569391" }, { "database": "PubMed", "id": "12766774", "url": "https://pubmed.ncbi.nlm.nih.gov/12766774" }, { "database": "PubMed", "id": "14681223", "url": "https://pubmed.ncbi.nlm.nih.gov/14681223" }, { "database": "PubMed", "id": "15073169", "url": "https://pubmed.ncbi.nlm.nih.gov/15073169" }, { "database": "PubMed", "id": "15150265", "url": "https://pubmed.ncbi.nlm.nih.gov/15150265" }, { "database": "PubMed", "id": "15282313", "url": "https://pubmed.ncbi.nlm.nih.gov/15282313" }, { "database": "PubMed", "id": "15708996", "url": "https://pubmed.ncbi.nlm.nih.gov/15708996" }, { "database": "PubMed", "id": "15736430", "url": "https://pubmed.ncbi.nlm.nih.gov/15736430" }, { "database": "PubMed", "id": "15791647", "url": "https://pubmed.ncbi.nlm.nih.gov/15791647" }, { "database": "PubMed", "id": "15940258", "url": "https://pubmed.ncbi.nlm.nih.gov/15940258" }, { "database": "PubMed", "id": "15961392", "url": "https://pubmed.ncbi.nlm.nih.gov/15961392" }, { "database": "PubMed", "id": "16481012", "url": "https://pubmed.ncbi.nlm.nih.gov/16481012" }, { "database": "PubMed", "id": "16582626", "url": "https://pubmed.ncbi.nlm.nih.gov/16582626" }, { "database": "PubMed", "id": "17237275", "url": "https://pubmed.ncbi.nlm.nih.gov/17237275" }, { "database": "PubMed", "id": "17329004", "url": "https://pubmed.ncbi.nlm.nih.gov/17329004" }, { "database": "PubMed", "id": "17409144", "url": "https://pubmed.ncbi.nlm.nih.gov/17409144" }, { "database": "PubMed", "id": "17630511", "url": "https://pubmed.ncbi.nlm.nih.gov/17630511" }, { "database": "PubMed", "id": "17989878", "url": "https://pubmed.ncbi.nlm.nih.gov/17989878" }, { "database": "PubMed", "id": "18159951", "url": "https://pubmed.ncbi.nlm.nih.gov/18159951" }, { "database": "PubMed", "id": "18843201", "url": "https://pubmed.ncbi.nlm.nih.gov/18843201" }, { "database": "PubMed", "id": "19401701", "url": "https://pubmed.ncbi.nlm.nih.gov/19401701" }, { "database": "PubMed", "id": "20143254", "url": "https://pubmed.ncbi.nlm.nih.gov/20143254" }, { "database": "PubMed", "id": "20500813", "url": "https://pubmed.ncbi.nlm.nih.gov/20500813" }, { "database": "PubMed", "id": "20564478", "url": "https://pubmed.ncbi.nlm.nih.gov/20564478" }, { "database": "PubMed", "id": "20637859", "url": "https://pubmed.ncbi.nlm.nih.gov/20637859" }, { "database": "PubMed", "id": "21189416", "url": "https://pubmed.ncbi.nlm.nih.gov/21189416" }, { "database": "PubMed", "id": "21321122", "url": "https://pubmed.ncbi.nlm.nih.gov/21321122" }, { "database": "PubMed", "id": "21624128", "url": "https://pubmed.ncbi.nlm.nih.gov/21624128" }, { "database": "PubMed", "id": "22842784", "url": "https://pubmed.ncbi.nlm.nih.gov/22842784" }, { "database": "PubMed", "id": "22843362", "url": "https://pubmed.ncbi.nlm.nih.gov/22843362" }, { "database": "PubMed", "id": "23451128", "url": "https://pubmed.ncbi.nlm.nih.gov/23451128" }, { "database": "PubMed", "id": "23733185", "url": "https://pubmed.ncbi.nlm.nih.gov/23733185" }, { "database": "PubMed", "id": "23967052", "url": "https://pubmed.ncbi.nlm.nih.gov/23967052" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24505404", "url": "https://pubmed.ncbi.nlm.nih.gov/24505404" }, { "database": "PubMed", "id": "24525428", "url": "https://pubmed.ncbi.nlm.nih.gov/24525428" }, { "database": "PubMed", "id": "24643073", "url": "https://pubmed.ncbi.nlm.nih.gov/24643073" }, { "database": "PubMed", "id": "24651441", "url": "https://pubmed.ncbi.nlm.nih.gov/24651441" }, { "database": "PubMed", "id": "25506060", "url": "https://pubmed.ncbi.nlm.nih.gov/25506060" }, { "database": "PubMed", "id": "25544753", "url": "https://pubmed.ncbi.nlm.nih.gov/25544753" }, { "database": "PubMed", "id": "25573277", "url": "https://pubmed.ncbi.nlm.nih.gov/25573277" }, { "database": "PubMed", "id": "25938491", "url": "https://pubmed.ncbi.nlm.nih.gov/25938491" }, { "database": "PubMed", "id": "26485758", "url": "https://pubmed.ncbi.nlm.nih.gov/26485758" }, { "database": "PubMed", "id": "26683224", "url": "https://pubmed.ncbi.nlm.nih.gov/26683224" }, { "database": "PubMed", "id": "26699757", "url": "https://pubmed.ncbi.nlm.nih.gov/26699757" }, { "database": "PubMed", "id": "26799419", "url": "https://pubmed.ncbi.nlm.nih.gov/26799419" }, { "database": "PubMed", "id": "27134571", "url": "https://pubmed.ncbi.nlm.nih.gov/27134571" }, { "database": "PubMed", "id": "27603133", "url": "https://pubmed.ncbi.nlm.nih.gov/27603133" }, { "database": "PubMed", "id": "27619510", "url": "https://pubmed.ncbi.nlm.nih.gov/27619510" }, { "database": "PubMed", "id": "29039919", "url": "https://pubmed.ncbi.nlm.nih.gov/29039919" }, { "database": "PubMed", "id": "29071385", "url": "https://pubmed.ncbi.nlm.nih.gov/29071385" }, { "database": "PubMed", "id": "29439343", "url": "https://pubmed.ncbi.nlm.nih.gov/29439343" }, { "database": "PubMed", "id": "29467227", "url": "https://pubmed.ncbi.nlm.nih.gov/29467227" }, { "database": "PubMed", "id": "29680228", "url": "https://pubmed.ncbi.nlm.nih.gov/29680228" }, { "database": "PubMed", "id": "29734760", "url": "https://pubmed.ncbi.nlm.nih.gov/29734760" }, { "database": "PubMed", "id": "29754473", "url": "https://pubmed.ncbi.nlm.nih.gov/29754473" }, { "database": "PubMed", "id": "29774099", "url": "https://pubmed.ncbi.nlm.nih.gov/29774099" }, { "database": "PubMed", "id": "30400903", "url": "https://pubmed.ncbi.nlm.nih.gov/30400903" }, { "database": "PubMed", "id": "31285938", "url": "https://pubmed.ncbi.nlm.nih.gov/31285938" }, { "database": "PubMed", "id": "32311864", "url": "https://pubmed.ncbi.nlm.nih.gov/32311864" }, { "database": "PubMed", "id": "32393310", "url": "https://pubmed.ncbi.nlm.nih.gov/32393310" }, { "database": "PubMed", "id": "33628174", "url": "https://pubmed.ncbi.nlm.nih.gov/33628174" }, { "database": "PubMed", "id": "33718142", "url": "https://pubmed.ncbi.nlm.nih.gov/33718142" }, { "database": "PubMed", "id": "9278511", "url": "https://pubmed.ncbi.nlm.nih.gov/9278511" }, { "database": "PubMed", "id": "9278512", "url": "https://pubmed.ncbi.nlm.nih.gov/9278512" }, { "database": "PubMed", "id": "9543386", "url": "https://pubmed.ncbi.nlm.nih.gov/9543386" }, { "database": "PubMed", "id": "9836640", "url": "https://pubmed.ncbi.nlm.nih.gov/9836640" }, { "database": "PubMed", "id": "15629715", "url": "https://pubmed.ncbi.nlm.nih.gov/15629715" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "11333986", "url": "https://pubmed.ncbi.nlm.nih.gov/11333986" } ], "site_lbl": "Ser216", "uniprot_canonical_ac": "P30307-1" } ], "record_id": "pubmed.24023871", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear Raf-1 kinase regulates the CXCR5 promoter by associating with NFATc3 to drive retinoic acid-induced leukemic cell differentiation.", "journal": "The FEBS journal", "date": "2014-02", "authors": "Geil Wendy M, Yen Andrew", "reference": { "type": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.24330068", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeting the prohibitin scaffold-CRAF kinase interaction in RAS-ERK-driven pancreatic ductal adenocarcinoma.", "journal": "Molecular cancer", "date": "2014", "authors": "Luan Z, He Y, Alattar M, Chen Z, He F", "reference": { "type": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.24568222", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RASSF1A inactivation unleashes a tumor suppressor/oncogene cascade with context-dependent consequences on cell cycle progression.", "journal": "Molecular and cellular biology", "date": "2014", "authors": "Ram RR, Mendiratta S, Bodemann BO, Torres MJ, Eskiocak U, White MA", "reference": { "type": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.24732797", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAF1 mutations in childhood-onset dilated cardiomyopathy.", "journal": "Nature genetics", "date": "2014", "authors": "Dhandapany PS, Razzaque MA, Muthusami U, Kunnoth S, Edwards JJ, Mulero-Navarro S, Riess I, Pardo S, Sheng J, Rani DS, Rani B, Govindaraj P, Flex E, Yokota T, Furutani M, Nishizawa T, Nakanishi T, Robbins J, Limongelli G, Hajjar RJ, Lebeche D, Bahl A, Khullar M, Rathinavel A, Sadler KC, Tartaglia M, Matsuoka R, Thangaraj K, Gelb BD", "reference": { "type": "PubMed", "id": "24777450", "url": "https://pubmed.ncbi.nlm.nih.gov/24777450" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24777450", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinoic acid therapy resistance progresses from unilineage to bilineage in HL-60 leukemic blasts.", "journal": "PloS one", "date": "2014", "authors": "Jensen HA, Bunaciu RP, Ibabao CN, Myers R, Varner JD, Yen A", "reference": { "type": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.24922062", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein interaction switches coordinate Raf-1 and MST2/Hippo signalling.", "journal": "Nature cell biology", "date": "2014", "authors": "Romano D, Nguyen LK, Matallanas D, Halasz M, Doherty C, Kholodenko BN, Kolch W", "reference": { "type": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.24929361", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of RAF1 (c-RAF) by the Marine Alkaloid Lasonolide A Induces Rapid Premature Chromosome Condensation.", "journal": "Marine drugs", "date": "2015", "authors": "Josse R, Zhang YW, Giroux V, Ghosh AK, Luo J, Pommier Y", "reference": { "type": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.26058013", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IL-17A and its homologs IL-25/IL-17E recruit the c-RAF/S6 kinase pathway and the generation of pro-oncogenic LMW-E in breast cancer cells.", "journal": "Scientific reports", "date": "2015", "authors": "Mombelli S, Cochaud S, Merrouche Y, Garbar C, Antonicelli F, Laprevotte E, Alberici G, Bonnefoy N, Eliaou JF, Bastid J, Bensussan A, Giustiniani J", "reference": { "type": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.26154409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biophysical Characterization of Essential Phosphorylation at the Flexible C-Terminal Region of C-Raf with 14-3-3zeta Protein.", "journal": "PloS one", "date": "2015", "authors": "Ghosh A, Ratha BN, Gayen N, Mroue KH, Kar RK, Mandal AK, Bhunia A", "reference": { "type": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.26295714", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kinase-independent role for CRAF-driving tumour radioresistance via CHK2.", "journal": "Nature communications", "date": "2015", "authors": "Advani SJ, Camargo MF, Seguin L, Mielgo A, Anand S, Hicks AM, Aguilera J, Franovic A, Weis SM, Cheresh DA", "reference": { "type": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O96017-1", "protein_name": "Serine/threonine-protein kinase Chk2", "gene_name": "CHEK2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 68, "end_pos": 68, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ATM and MAP3K20", "evidence": [ { "database": "UniProtKB", "id": "O96017", "url": "https://www.uniprot.org/uniprotkb/O96017" }, { "database": "PRO", "id": "O96017", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O96017" }, { "database": "iPTMnet", "id": "O96017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O96017" }, { "database": "PubMed", "id": "10744722", "url": "https://pubmed.ncbi.nlm.nih.gov/10744722" }, { "database": "PubMed", "id": "10973490", "url": "https://pubmed.ncbi.nlm.nih.gov/10973490" }, { "database": "PubMed", "id": "11053450", "url": "https://pubmed.ncbi.nlm.nih.gov/11053450" }, { "database": "PubMed", "id": "11085506", "url": "https://pubmed.ncbi.nlm.nih.gov/11085506" }, { "database": "PubMed", "id": "11668173", "url": "https://pubmed.ncbi.nlm.nih.gov/11668173" }, { "database": "PubMed", "id": "11901158", "url": "https://pubmed.ncbi.nlm.nih.gov/11901158" }, { "database": "PubMed", "id": "12242661", "url": "https://pubmed.ncbi.nlm.nih.gov/12242661" }, { "database": "PubMed", "id": "12386164", "url": "https://pubmed.ncbi.nlm.nih.gov/12386164" }, { "database": "PubMed", "id": "12447382", "url": "https://pubmed.ncbi.nlm.nih.gov/12447382" }, { "database": "PubMed", "id": "12493754", "url": "https://pubmed.ncbi.nlm.nih.gov/12493754" }, { "database": "PubMed", "id": "12607004", "url": "https://pubmed.ncbi.nlm.nih.gov/12607004" }, { "database": "PubMed", "id": "12637545", "url": "https://pubmed.ncbi.nlm.nih.gov/12637545" }, { "database": "PubMed", "id": "12805407", "url": "https://pubmed.ncbi.nlm.nih.gov/12805407" }, { "database": "PubMed", "id": "15048074", "url": "https://pubmed.ncbi.nlm.nih.gov/15048074" }, { "database": "PubMed", "id": "15140942", "url": "https://pubmed.ncbi.nlm.nih.gov/15140942" }, { "database": "PubMed", "id": "15213307", "url": "https://pubmed.ncbi.nlm.nih.gov/15213307" }, { "database": "PubMed", "id": "15361851", "url": "https://pubmed.ncbi.nlm.nih.gov/15361851" }, { "database": "PubMed", "id": "15533933", "url": "https://pubmed.ncbi.nlm.nih.gov/15533933" }, { "database": "PubMed", "id": "15618221", "url": "https://pubmed.ncbi.nlm.nih.gov/15618221" }, { "database": "PubMed", "id": "15668230", "url": "https://pubmed.ncbi.nlm.nih.gov/15668230" }, { "database": "PubMed", "id": "15700044", "url": "https://pubmed.ncbi.nlm.nih.gov/15700044" }, { "database": "PubMed", "id": "15784679", "url": "https://pubmed.ncbi.nlm.nih.gov/15784679" }, { "database": "PubMed", "id": "15876876", "url": "https://pubmed.ncbi.nlm.nih.gov/15876876" }, { "database": "PubMed", "id": "15963507", "url": "https://pubmed.ncbi.nlm.nih.gov/15963507" }, { "database": "PubMed", "id": "16024600", "url": "https://pubmed.ncbi.nlm.nih.gov/16024600" }, { "database": "PubMed", "id": "16150728", "url": "https://pubmed.ncbi.nlm.nih.gov/16150728" }, { "database": "PubMed", "id": "16311512", "url": "https://pubmed.ncbi.nlm.nih.gov/16311512" }, { "database": "PubMed", "id": "16322218", "url": "https://pubmed.ncbi.nlm.nih.gov/16322218" }, { "database": "PubMed", "id": "16456034", "url": "https://pubmed.ncbi.nlm.nih.gov/16456034" }, { "database": "PubMed", "id": "16461339", "url": "https://pubmed.ncbi.nlm.nih.gov/16461339" }, { "database": "PubMed", "id": "16481012", "url": "https://pubmed.ncbi.nlm.nih.gov/16481012" }, { "database": "PubMed", "id": "16596250", "url": "https://pubmed.ncbi.nlm.nih.gov/16596250" }, { "database": "PubMed", "id": "16705183", "url": "https://pubmed.ncbi.nlm.nih.gov/16705183" }, { "database": "PubMed", "id": "16741947", "url": "https://pubmed.ncbi.nlm.nih.gov/16741947" }, { "database": "PubMed", "id": "16794575", "url": "https://pubmed.ncbi.nlm.nih.gov/16794575" }, { "database": "PubMed", "id": "16798742", "url": "https://pubmed.ncbi.nlm.nih.gov/16798742" }, { "database": "PubMed", "id": "16940182", "url": "https://pubmed.ncbi.nlm.nih.gov/16940182" }, { "database": "PubMed", "id": "16982735", "url": "https://pubmed.ncbi.nlm.nih.gov/16982735" }, { "database": "PubMed", "id": "17236549", "url": "https://pubmed.ncbi.nlm.nih.gov/17236549" }, { "database": "PubMed", "id": "17363488", "url": "https://pubmed.ncbi.nlm.nih.gov/17363488" }, { "database": "PubMed", "id": "17513615", "url": "https://pubmed.ncbi.nlm.nih.gov/17513615" }, { "database": "PubMed", "id": "17671118", "url": "https://pubmed.ncbi.nlm.nih.gov/17671118" }, { "database": "PubMed", "id": "17685927", "url": "https://pubmed.ncbi.nlm.nih.gov/17685927" }, { "database": "PubMed", "id": "17715138", "url": "https://pubmed.ncbi.nlm.nih.gov/17715138" }, { "database": "PubMed", "id": "17940507", "url": "https://pubmed.ncbi.nlm.nih.gov/17940507" }, { "database": "PubMed", "id": "18762365", "url": "https://pubmed.ncbi.nlm.nih.gov/18762365" }, { "database": "PubMed", "id": "18787700", "url": "https://pubmed.ncbi.nlm.nih.gov/18787700" }, { "database": "PubMed", "id": "18812180", "url": "https://pubmed.ncbi.nlm.nih.gov/18812180" }, { "database": "PubMed", "id": "18948271", "url": "https://pubmed.ncbi.nlm.nih.gov/18948271" }, { "database": "PubMed", "id": "18957425", "url": "https://pubmed.ncbi.nlm.nih.gov/18957425" }, { "database": "PubMed", "id": "18985806", "url": "https://pubmed.ncbi.nlm.nih.gov/18985806" }, { "database": "PubMed", "id": "19001859", "url": "https://pubmed.ncbi.nlm.nih.gov/19001859" }, { "database": "PubMed", "id": "19151762", "url": "https://pubmed.ncbi.nlm.nih.gov/19151762" }, { "database": "PubMed", "id": "19330022", "url": "https://pubmed.ncbi.nlm.nih.gov/19330022" }, { "database": "PubMed", "id": "19377277", "url": "https://pubmed.ncbi.nlm.nih.gov/19377277" }, { "database": "PubMed", "id": "19390600", "url": "https://pubmed.ncbi.nlm.nih.gov/19390600" }, { "database": "PubMed", "id": "19411857", "url": "https://pubmed.ncbi.nlm.nih.gov/19411857" }, { "database": "PubMed", "id": "19451272", "url": "https://pubmed.ncbi.nlm.nih.gov/19451272" }, { "database": "PubMed", "id": "19658174", "url": "https://pubmed.ncbi.nlm.nih.gov/19658174" }, { "database": "PubMed", "id": "19782031", "url": "https://pubmed.ncbi.nlm.nih.gov/19782031" }, { "database": "PubMed", "id": "19798429", "url": "https://pubmed.ncbi.nlm.nih.gov/19798429" }, { "database": "PubMed", "id": "20126263", "url": "https://pubmed.ncbi.nlm.nih.gov/20126263" }, { "database": "PubMed", "id": "20406977", "url": "https://pubmed.ncbi.nlm.nih.gov/20406977" }, { "database": "PubMed", "id": "20424615", "url": "https://pubmed.ncbi.nlm.nih.gov/20424615" }, { "database": "PubMed", "id": "20599567", "url": "https://pubmed.ncbi.nlm.nih.gov/20599567" }, { "database": "PubMed", "id": "20637859", "url": "https://pubmed.ncbi.nlm.nih.gov/20637859" }, { "database": "PubMed", "id": "20637980", "url": "https://pubmed.ncbi.nlm.nih.gov/20637980" }, { "database": "PubMed", "id": "20713355", "url": "https://pubmed.ncbi.nlm.nih.gov/20713355" }, { "database": "PubMed", "id": "21102523", "url": "https://pubmed.ncbi.nlm.nih.gov/21102523" }, { "database": "PubMed", "id": "21147465", "url": "https://pubmed.ncbi.nlm.nih.gov/21147465" }, { "database": "PubMed", "id": "21310354", "url": "https://pubmed.ncbi.nlm.nih.gov/21310354" }, { "database": "PubMed", "id": "21338495", "url": "https://pubmed.ncbi.nlm.nih.gov/21338495" }, { "database": "PubMed", "id": "21390062", "url": "https://pubmed.ncbi.nlm.nih.gov/21390062" }, { "database": "PubMed", "id": "21624128", "url": "https://pubmed.ncbi.nlm.nih.gov/21624128" }, { "database": "PubMed", "id": "21765476", "url": "https://pubmed.ncbi.nlm.nih.gov/21765476" }, { "database": "PubMed", "id": "21772273", "url": "https://pubmed.ncbi.nlm.nih.gov/21772273" }, { "database": "PubMed", "id": "22170260", "url": "https://pubmed.ncbi.nlm.nih.gov/22170260" }, { "database": "PubMed", "id": "22312557", "url": "https://pubmed.ncbi.nlm.nih.gov/22312557" }, { "database": "PubMed", "id": "22589537", "url": "https://pubmed.ncbi.nlm.nih.gov/22589537" }, { "database": "PubMed", "id": "22623962", "url": "https://pubmed.ncbi.nlm.nih.gov/22623962" }, { "database": "PubMed", "id": "23013471", "url": "https://pubmed.ncbi.nlm.nih.gov/23013471" }, { "database": "PubMed", "id": "23383325", "url": "https://pubmed.ncbi.nlm.nih.gov/23383325" }, { "database": "PubMed", "id": "23598415", "url": "https://pubmed.ncbi.nlm.nih.gov/23598415" }, { "database": "PubMed", "id": "23666059", "url": "https://pubmed.ncbi.nlm.nih.gov/23666059" }, { "database": "PubMed", "id": "23690919", "url": "https://pubmed.ncbi.nlm.nih.gov/23690919" }, { "database": "PubMed", "id": "23705030", "url": "https://pubmed.ncbi.nlm.nih.gov/23705030" }, { "database": "PubMed", "id": "23977391", "url": "https://pubmed.ncbi.nlm.nih.gov/23977391" }, { "database": "PubMed", "id": "24153426", "url": "https://pubmed.ncbi.nlm.nih.gov/24153426" }, { "database": "PubMed", "id": "24190430", "url": "https://pubmed.ncbi.nlm.nih.gov/24190430" }, { "database": "PubMed", "id": "24415942", "url": "https://pubmed.ncbi.nlm.nih.gov/24415942" }, { "database": "PubMed", "id": "24492479", "url": "https://pubmed.ncbi.nlm.nih.gov/24492479" }, { "database": "PubMed", "id": "24498068", "url": "https://pubmed.ncbi.nlm.nih.gov/24498068" }, { "database": "PubMed", "id": "24553354", "url": "https://pubmed.ncbi.nlm.nih.gov/24553354" }, { "database": "PubMed", "id": "24758542", "url": "https://pubmed.ncbi.nlm.nih.gov/24758542" }, { "database": "PubMed", "id": "24792164", "url": "https://pubmed.ncbi.nlm.nih.gov/24792164" }, { "database": "PubMed", "id": "24798733", "url": "https://pubmed.ncbi.nlm.nih.gov/24798733" }, { "database": "PubMed", "id": "24812435", "url": "https://pubmed.ncbi.nlm.nih.gov/24812435" }, { "database": "PubMed", "id": "24844881", "url": "https://pubmed.ncbi.nlm.nih.gov/24844881" }, { "database": "PubMed", "id": "24882580", "url": "https://pubmed.ncbi.nlm.nih.gov/24882580" }, { "database": "PubMed", "id": "25111195", "url": "https://pubmed.ncbi.nlm.nih.gov/25111195" }, { "database": "PubMed", "id": "25527123", "url": "https://pubmed.ncbi.nlm.nih.gov/25527123" }, { "database": "PubMed", "id": "25535901", "url": "https://pubmed.ncbi.nlm.nih.gov/25535901" }, { "database": "PubMed", "id": "25875766", "url": "https://pubmed.ncbi.nlm.nih.gov/25875766" }, { "database": "PubMed", "id": "25886177", "url": "https://pubmed.ncbi.nlm.nih.gov/25886177" }, { "database": "PubMed", "id": "25895498", "url": "https://pubmed.ncbi.nlm.nih.gov/25895498" }, { "database": "PubMed", "id": "26158765", "url": "https://pubmed.ncbi.nlm.nih.gov/26158765" }, { "database": "PubMed", "id": "26333122", "url": "https://pubmed.ncbi.nlm.nih.gov/26333122" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26416514", "url": "https://pubmed.ncbi.nlm.nih.gov/26416514" }, { "database": "PubMed", "id": "26431963", "url": "https://pubmed.ncbi.nlm.nih.gov/26431963" }, { "database": "PubMed", "id": "26441204", "url": "https://pubmed.ncbi.nlm.nih.gov/26441204" }, { "database": "PubMed", "id": "26442630", "url": "https://pubmed.ncbi.nlm.nih.gov/26442630" }, { "database": "PubMed", "id": "26485758", "url": "https://pubmed.ncbi.nlm.nih.gov/26485758" }, { "database": "PubMed", "id": "26542114", "url": "https://pubmed.ncbi.nlm.nih.gov/26542114" }, { "database": "PubMed", "id": "26714930", "url": "https://pubmed.ncbi.nlm.nih.gov/26714930" }, { "database": "PubMed", "id": "26751069", "url": "https://pubmed.ncbi.nlm.nih.gov/26751069" }, { "database": "PubMed", "id": "26919204", "url": "https://pubmed.ncbi.nlm.nih.gov/26919204" }, { "database": "PubMed", "id": "27029031", "url": "https://pubmed.ncbi.nlm.nih.gov/27029031" }, { "database": "PubMed", "id": "27076856", "url": "https://pubmed.ncbi.nlm.nih.gov/27076856" }, { "database": "PubMed", "id": "27125496", "url": "https://pubmed.ncbi.nlm.nih.gov/27125496" }, { "database": "PubMed", "id": "27767095", "url": "https://pubmed.ncbi.nlm.nih.gov/27767095" }, { "database": "PubMed", "id": "27888802", "url": "https://pubmed.ncbi.nlm.nih.gov/27888802" }, { "database": "PubMed", "id": "27991505", "url": "https://pubmed.ncbi.nlm.nih.gov/27991505" }, { "database": "PubMed", "id": "28038466", "url": "https://pubmed.ncbi.nlm.nih.gov/28038466" }, { "database": "PubMed", "id": "28049532", "url": "https://pubmed.ncbi.nlm.nih.gov/28049532" }, { "database": "PubMed", "id": "28094252", "url": "https://pubmed.ncbi.nlm.nih.gov/28094252" }, { "database": "PubMed", "id": "28103869", "url": "https://pubmed.ncbi.nlm.nih.gov/28103869" }, { "database": "PubMed", "id": "28259974", "url": "https://pubmed.ncbi.nlm.nih.gov/28259974" }, { "database": "PubMed", "id": "28535155", "url": "https://pubmed.ncbi.nlm.nih.gov/28535155" }, { "database": "PubMed", "id": "28539821", "url": "https://pubmed.ncbi.nlm.nih.gov/28539821" }, { "database": "PubMed", "id": "28852018", "url": "https://pubmed.ncbi.nlm.nih.gov/28852018" }, { "database": "PubMed", "id": "28967905", "url": "https://pubmed.ncbi.nlm.nih.gov/28967905" }, { "database": "PubMed", "id": "29062040", "url": "https://pubmed.ncbi.nlm.nih.gov/29062040" }, { "database": "PubMed", "id": "29340034", "url": "https://pubmed.ncbi.nlm.nih.gov/29340034" }, { "database": "PubMed", "id": "29399146", "url": "https://pubmed.ncbi.nlm.nih.gov/29399146" }, { "database": "PubMed", "id": "29444163", "url": "https://pubmed.ncbi.nlm.nih.gov/29444163" }, { "database": "PubMed", "id": "29563987", "url": "https://pubmed.ncbi.nlm.nih.gov/29563987" }, { "database": "PubMed", "id": "29643855", "url": "https://pubmed.ncbi.nlm.nih.gov/29643855" }, { "database": "PubMed", "id": "29741650", "url": "https://pubmed.ncbi.nlm.nih.gov/29741650" }, { "database": "PubMed", "id": "30054569", "url": "https://pubmed.ncbi.nlm.nih.gov/30054569" }, { "database": "PubMed", "id": "30245854", "url": "https://pubmed.ncbi.nlm.nih.gov/30245854" }, { "database": "PubMed", "id": "30272263", "url": "https://pubmed.ncbi.nlm.nih.gov/30272263" }, { "database": "PubMed", "id": "30304835", "url": "https://pubmed.ncbi.nlm.nih.gov/30304835" }, { "database": "PubMed", "id": "30337689", "url": "https://pubmed.ncbi.nlm.nih.gov/30337689" }, { "database": "PubMed", "id": "30473536", "url": "https://pubmed.ncbi.nlm.nih.gov/30473536" }, { "database": "PubMed", "id": "30483783", "url": "https://pubmed.ncbi.nlm.nih.gov/30483783" }, { "database": "PubMed", "id": "30516086", "url": "https://pubmed.ncbi.nlm.nih.gov/30516086" }, { "database": "PubMed", "id": "30900384", "url": "https://pubmed.ncbi.nlm.nih.gov/30900384" }, { "database": "PubMed", "id": "31209362", "url": "https://pubmed.ncbi.nlm.nih.gov/31209362" }, { "database": "PubMed", "id": "31269698", "url": "https://pubmed.ncbi.nlm.nih.gov/31269698" }, { "database": "PubMed", "id": "31759252", "url": "https://pubmed.ncbi.nlm.nih.gov/31759252" }, { "database": "PubMed", "id": "31777420", "url": "https://pubmed.ncbi.nlm.nih.gov/31777420" }, { "database": "PubMed", "id": "31911943", "url": "https://pubmed.ncbi.nlm.nih.gov/31911943" }, { "database": "PubMed", "id": "32432260", "url": "https://pubmed.ncbi.nlm.nih.gov/32432260" }, { "database": "PubMed", "id": "32479542", "url": "https://pubmed.ncbi.nlm.nih.gov/32479542" }, { "database": "PubMed", "id": "32741974", "url": "https://pubmed.ncbi.nlm.nih.gov/32741974" }, { "database": "PubMed", "id": "32752095", "url": "https://pubmed.ncbi.nlm.nih.gov/32752095" }, { "database": "PubMed", "id": "32883962", "url": "https://pubmed.ncbi.nlm.nih.gov/32883962" }, { "database": "PubMed", "id": "32942996", "url": "https://pubmed.ncbi.nlm.nih.gov/32942996" }, { "database": "PubMed", "id": "33500399", "url": "https://pubmed.ncbi.nlm.nih.gov/33500399" }, { "database": "PubMed", "id": "33607997", "url": "https://pubmed.ncbi.nlm.nih.gov/33607997" }, { "database": "PubMed", "id": "33968195", "url": "https://pubmed.ncbi.nlm.nih.gov/33968195" }, { "database": "PubMed", "id": "35663228", "url": "https://pubmed.ncbi.nlm.nih.gov/35663228" }, { "database": "PubMed", "id": "35999268", "url": "https://pubmed.ncbi.nlm.nih.gov/35999268" }, { "database": "PubMed", "id": "15342622", "url": "https://pubmed.ncbi.nlm.nih.gov/15342622" } ], "site_lbl": "Thr68", "uniprot_canonical_ac": "O96017-1" } ], "record_id": "pubmed.26333361", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crosstalk Between MAPK/ERK and PI3K/AKT Signal Pathways During Brain Ischemia/Reperfusion.", "journal": "ASN neuro", "date": "2015", "authors": "Zhou J, Du T, Li B, Rong Y, Verkhratsky A, Peng L", "reference": { "type": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.26442853", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reproducible Analysis of Post-Translational Modifications in Proteomes--Application to Human Mutations.", "journal": "PloS one", "date": "2015", "authors": "Holehouse AS, Naegle KM", "reference": { "type": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 257, "end_pos": 257, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" } ], "site_lbl": "Ser257", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 258, "end_pos": 258, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" } ], "site_lbl": "Thr258", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.26659599", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polo-like kinase 1 induces epithelial-to-mesenchymal transition and promotes epithelial cell motility by activating CRAF/ERK signaling.", "journal": "eLife", "date": "2016", "authors": "Wu J, Ivanov AI, Fisher PB, Fu Z", "reference": { "type": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "P53350-1", "kinase_gene_name": "PLK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 339, "end_pos": 339, "kinase_uniprot_canonical_ac": "P53350-1", "kinase_gene_name": "PLK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" } ], "site_lbl": "Ser339", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.27003818", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RRD-251 enhances all-trans retinoic acid (RA)-induced differentiation of HL-60 myeloblastic leukemia cells.", "journal": "Oncotarget", "date": "2016", "authors": "Wallace AS, Supnick HT, Bunaciu RP, Yen A", "reference": { "type": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.27331409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Unveiling Hidden Dynamics of Hippo Signalling: A Systems Analysis.", "journal": "Genes", "date": "2016", "authors": "Shin SY, Nguyen LK", "reference": { "type": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.27527217", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isoproterenol increases histone deacetylase 6 expression and cell migration by inhibiting ERK signaling via PKA and Epac pathways in human lung cancer cells.", "journal": "Experimental & molecular medicine", "date": "2016", "authors": "Lim JA, Juhnn YS", "reference": { "type": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.27534532", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of the C-Raf N Region Promotes Raf Dimerization.", "journal": "Molecular and cellular biology", "date": "2017-10-01", "authors": "Takahashi Maho, Li Yanping, Dillon Tara J, Kariya Yumi, Stork Philip J S", "reference": { "type": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 341, "end_pos": 341, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr341", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.28694330", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Non-V600 BRAF mutations recurrently found in lung cancer predict sensitivity to the combination of Trametinib and Dabrafenib.", "journal": "Oncotarget", "date": "2017", "authors": "Noeparast A, Teugels E, Giron P, Verschelden G, De Brakeleer S, Decoster L, De Greve J", "reference": { "type": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.28947956", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dasatinib synergizes with ATRA to trigger granulocytic differentiation in ATRA resistant acute promyelocytic leukemia cell lines via Lyn inhibition-mediated activation of RAF-1/MEK/ERK.", "journal": "Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association", "date": "2018-09", "authors": "Ding Ming, Weng Xiang-Qin, Sheng Yan, Wu Jing, Liang Cui, Cai Xun", "reference": { "type": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.29097117", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The novel RAF1 mutation p.(Gly361Ala) located outside the kinase domain of the CR3 region in two patients with Noonan syndrome, including one with a rare brain tumor.", "journal": "American journal of medical genetics. Part A", "date": "2018", "authors": "Harms FL, Alawi M, Amor DJ, Tan TY, Cuturilo G, Lissewski C, Brinkmann J, Schanze D, Kutsche K, Zenker M", "reference": { "type": "PubMed", "id": "29271604", "url": "https://pubmed.ncbi.nlm.nih.gov/29271604" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29271604", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The c-Raf modulator RRD-251 enhances nuclear c-Raf/GSK-3/VDR axis signaling and augments 1,25-dihydroxyvitamin D3-induced differentiation of HL-60 myeloblastic leukemia cells.", "journal": "Oncotarget", "date": "2018", "authors": "Supnick HT, Bunaciu RP, Yen A", "reference": { "type": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.29515772", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RUVBL1, a novel C-RAF-binding protein, activates the RAF/MEK/ERK pathway to promote lung cancer tumorigenesis.", "journal": "Biochemical and biophysical research communications", "date": "2018", "authors": "Guo H, Zhang XY, Peng J, Huang Y, Yang Y, Liu Y, Guo XX, Hao Q, An S, Xu TR", "reference": { "type": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.29545175", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Type II RAF inhibitor causes superior ERK pathway suppression compared to type I RAF inhibitor in cells expressing different BRAF mutant types recurrently found in lung cancer.", "journal": "Oncotarget", "date": "2018", "authors": "Noeparast A, Giron P, De Brakeleer S, Eggermont C, De Ridder U, Teugels E, De Greve J", "reference": { "type": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.29662630", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "KAP1 inhibits the Raf-MEK-ERK pathway to promote tumorigenesis in A549 lung cancer cells.", "journal": "Molecular carcinogenesis", "date": "2018", "authors": "Wu GJ, Pen J, Huang Y, An S, Liu Y, Yang Y, Hao Q, Guo XX, Xu TR", "reference": { "type": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.29917268", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and biological activity of human homologs of the raf/mil oncogene.", "journal": "Mol. Cell. Biol.", "date": "1985", "authors": "Bonner T I, Kerby S B, Sutrave P, Gunnell M A, Mark G, Rapp U R", "reference": { "type": "PubMed", "id": "2993863", "url": "https://pubmed.ncbi.nlm.nih.gov/2993863" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2993863", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Detection of the myristylated gag-raf transforming protein with raf-specific antipeptide sera.", "journal": "Virology", "date": "1985-10-15", "authors": "Schultz A M, Copeland T D, Mark G E, Rapp U R, Oroszlan S", "reference": { "type": "PubMed", "id": "2994296", "url": "https://pubmed.ncbi.nlm.nih.gov/2994296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2994296", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The complete coding sequence of the human raf oncogene and the corresponding structure of the c-raf-1 gene.", "journal": "Nucleic Acids Res.", "date": "1986", "authors": "Bonner T I, Oppermann H, Seeburg P, Kerby S B, Gunnell M A, Young A C, Rapp U R", "reference": { "type": "PubMed", "id": "3003687", "url": "https://pubmed.ncbi.nlm.nih.gov/3003687" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3003687", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localization dynamics of endogenous fluorescently labeled RAF1 in EGF-stimulated cells.", "journal": "Molecular biology of the cell", "date": "2019", "authors": "Surve SV, Myers PJ, Clayton SA, Watkins SC, Lazzara MJ, Sorkin A", "reference": { "type": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.30586319", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeting B-Raf inhibitor resistant melanoma with novel cell penetrating peptide disrupters of PDE8A - C-Raf.", "journal": "BMC cancer", "date": "2019", "authors": "Blair CM, Walsh NM, Littman BH, Marcoux FW, Baillie GS", "reference": { "type": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.30909892", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "VCP/p97 controls signals of the ERK1/2 pathway transmitted via the Shoc2 scaffolding complex: novel insights into IBMPFD pathology.", "journal": "Molecular biology of the cell", "date": "2019", "authors": "Jang H, Jang ER, Wilson PG, Anderson D, Galperin E", "reference": { "type": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.31091164", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SHOC2 complex-driven RAF dimerization selectively contributes to ERK pathway dynamics.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2019", "authors": "Boned Del Rio I, Young LC, Sari S, Jones GG, Ringham-Terry B, Hartig N, Rejnowicz E, Lei W, Bhamra A, Surinova S, Rodriguez-Viciana P", "reference": { "type": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 341, "end_pos": 341, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr341", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.31213532", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRAF mutations in lung cancer can be oncogenic and predict sensitivity to combined type II RAF and MEK inhibition.", "journal": "Oncogene", "date": "2019", "authors": "Noeparast A, Giron P, Noor A, Bahadur Shahi R, De Brakeleer S, Eggermont C, Vandenplas H, Boeckx B, Lambrechts D, De Greve J, Teugels E", "reference": { "type": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.31285551", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAF kinases are stabilized and required for dendritic cell differentiation and function.", "journal": "Cell death and differentiation", "date": "2020-04", "authors": "Riegel Kristina, Schl\u00f6der Janine, Sobczak Marco, Jonuleit Helmut, Thiede Bernd, Schild Hansj\u00f6rg, Rajalingam Krishnaraj", "reference": { "type": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10398-1", "protein_name": "Serine/threonine-protein kinase A-Raf", "gene_name": "ARAF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 296, "end_pos": 296, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "15642359", "url": "https://pubmed.ncbi.nlm.nih.gov/15642359" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" } ], "site_lbl": "Ser296", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 301, "end_pos": 301, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "15642359", "url": "https://pubmed.ncbi.nlm.nih.gov/15642359" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" } ], "site_lbl": "Ser301", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 257, "end_pos": 257, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P10398", "url": "https://www.uniprot.org/uniprotkb/P10398" }, { "database": "PubMed", "id": "24275569", "url": "https://pubmed.ncbi.nlm.nih.gov/24275569" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "16964243", "url": "https://pubmed.ncbi.nlm.nih.gov/16964243" }, { "database": "iPTMnet", "id": "P10398", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10398" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "19691289", "url": "https://pubmed.ncbi.nlm.nih.gov/19691289" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" } ], "site_lbl": "Ser257", "uniprot_canonical_ac": "P10398-1" } ], "record_id": "pubmed.31541179", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "miR489 promotes apoptosis and inhibits invasiveness of glioma cells by targeting PAK5/RAF1 signaling pathways.", "journal": "Oncology reports", "date": "2019", "authors": "Wang W, Zhang L, Gao W, Zhang D, Zhao Z, Bao Y", "reference": { "type": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.31638257", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The crosstalk network of XIST/miR-424-5p/OGT mediates RAF1 glycosylation and participates in the progression of liver cancer.", "journal": "Liver international : official journal of the International Association for the Study of the Liver", "date": "2021", "authors": "Ning D, Chen J, Du P, Liu Q, Cheng Q, Li X, Zhang B, Chen X, Jiang L", "reference": { "type": "PubMed", "id": "33909326", "url": "https://pubmed.ncbi.nlm.nih.gov/33909326" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 10, "start_aa": "Thr", "end_pos": 10, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr10", "evidence": [ { "id": "33909326", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33909326" }, { "id": "P04049", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P04049" }, { "id": "31521821", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31521821" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "40136647", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40136647" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P04049-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 12, "start_aa": "Ser", "end_pos": 12, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser12", "evidence": [ { "id": "33909326", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33909326" }, { "id": "P04049", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P04049" }, { "id": "31521821", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31521821" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "40136647", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40136647" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P04049-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 227, "start_aa": "Ser", "end_pos": 227, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser227", "evidence": [ { "id": "33909326", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33909326" }, { "id": "P04049", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P04049" }, { "id": "31521821", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31521821" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" }, { "id": "40136647", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40136647" }, { "id": "P04049", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P04049" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.33909326", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 3 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "exact_o_linked_glycan_sites", "count": 3 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 3 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "exact_o_linked_glycan_sites", "count": 3 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAF1 gene fusions are recurrent driver events in infantile fibrosarcoma-like mesenchymal tumors.", "journal": "The Journal of pathology", "date": "2024-06", "authors": "Motta Marialetizia, Barresi Sabina, Pizzi Simone, Bifano Delfina, Lopez Marti Jennifer, Garrido-Pontnou Marta, Flex Elisabetta, Bruselles Alessandro, Giovannoni Isabella, Rotundo Giovannina, Fragale Alessandra, Tirelli Valentina, Vallese Silvia, Ciolfi Andrea, Bisogno Gianni, Alaggio Rita, Tartaglia Marco", "reference": { "type": "PubMed", "id": "38629245", "url": "https://pubmed.ncbi.nlm.nih.gov/38629245" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38629245", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of Raf by ceramide-activated protein kinase.", "journal": "Nature", "date": "1995", "authors": "Yao B, Zhang Y, Delikat S, Mathias S, Basu S, Kolesnick R", "reference": { "type": "PubMed", "id": "7477354", "url": "https://pubmed.ncbi.nlm.nih.gov/7477354" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 269, "end_pos": 269, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "7477354", "url": "https://pubmed.ncbi.nlm.nih.gov/7477354" }, { "database": "PubMed", "id": "15642359", "url": "https://pubmed.ncbi.nlm.nih.gov/15642359" }, { "database": "PubMed", "id": "19766101", "url": "https://pubmed.ncbi.nlm.nih.gov/19766101" } ], "site_lbl": "Thr269", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.7477354", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of the EGF-activated MAP kinase signaling pathway by adenosine 3',5'-monophosphate.", "journal": "Science (New York, N.Y.)", "date": "1993", "authors": "Wu J, Dent P, Jelinek T, Wolfman A, Weber MJ, Sturgill TW", "reference": { "type": "PubMed", "id": "7694366", "url": "https://pubmed.ncbi.nlm.nih.gov/7694366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and MAPK1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11027949", "url": "https://pubmed.ncbi.nlm.nih.gov/11027949" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "7694366", "url": "https://pubmed.ncbi.nlm.nih.gov/7694366" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "8607981", "url": "https://pubmed.ncbi.nlm.nih.gov/8607981" }, { "database": "PubMed", "id": "9001246", "url": "https://pubmed.ncbi.nlm.nih.gov/9001246" }, { "database": "PubMed", "id": "9272646", "url": "https://pubmed.ncbi.nlm.nih.gov/9272646" } ], "site_lbl": "Ser43", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.7694366", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Solution structure of the Ras-binding domain of c-Raf-1 and identification of its Ras interaction surface.", "journal": "Biochemistry", "date": "1995", "authors": "Emerson S D, Madison V S, Palermo R E, Waugh D S, Scheffler J E, Tsao K L, Kiefer S E, Liu S P, Fry D C", "reference": { "type": "PubMed", "id": "7766599", "url": "https://pubmed.ncbi.nlm.nih.gov/7766599" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7766599", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of inhibition of Raf-1 by protein kinase A.", "journal": "Molecular and cellular biology", "date": "1994", "authors": "Hafner S, Adler HS, Mischak H, Janosch P, Heidecker G, Wolfman A, Pippig S, Lohse M, Ueffing M, Kolch W", "reference": { "type": "PubMed", "id": "7935389", "url": "https://pubmed.ncbi.nlm.nih.gov/7935389" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "P17252-1", "kinase_gene_name": "PRKCA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "7935389", "url": "https://pubmed.ncbi.nlm.nih.gov/7935389" } ], "site_lbl": "Ser43", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.7935389", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the major phosphorylation sites of the Raf-1 kinase.", "journal": "The Journal of biological chemistry", "date": "1993", "authors": "Morrison DK, Heidecker G, Rapp UR, Copeland TD", "reference": { "type": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKC and PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10576742", "url": "https://pubmed.ncbi.nlm.nih.gov/10576742" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "11997508", "url": "https://pubmed.ncbi.nlm.nih.gov/11997508" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "PubMed", "id": "35044719", "url": "https://pubmed.ncbi.nlm.nih.gov/35044719" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "11341776", "url": "https://pubmed.ncbi.nlm.nih.gov/11341776" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "12083801", "url": "https://pubmed.ncbi.nlm.nih.gov/12083801" }, { "database": "PubMed", "id": "12087097", "url": "https://pubmed.ncbi.nlm.nih.gov/12087097" }, { "database": "PubMed", "id": "12181740", "url": "https://pubmed.ncbi.nlm.nih.gov/12181740" }, { "database": "PubMed", "id": "12225966", "url": "https://pubmed.ncbi.nlm.nih.gov/12225966" }, { "database": "PubMed", "id": "12691603", "url": "https://pubmed.ncbi.nlm.nih.gov/12691603" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "14755538", "url": "https://pubmed.ncbi.nlm.nih.gov/14755538" }, { "database": "PubMed", "id": "14992682", "url": "https://pubmed.ncbi.nlm.nih.gov/14992682" }, { "database": "PubMed", "id": "15047712", "url": "https://pubmed.ncbi.nlm.nih.gov/15047712" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15534860", "url": "https://pubmed.ncbi.nlm.nih.gov/15534860" }, { "database": "PubMed", "id": "15772344", "url": "https://pubmed.ncbi.nlm.nih.gov/15772344" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16239230", "url": "https://pubmed.ncbi.nlm.nih.gov/16239230" }, { "database": "PubMed", "id": "16760675", "url": "https://pubmed.ncbi.nlm.nih.gov/16760675" }, { "database": "PubMed", "id": "17031853", "url": "https://pubmed.ncbi.nlm.nih.gov/17031853" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18055485", "url": "https://pubmed.ncbi.nlm.nih.gov/18055485" }, { "database": "PubMed", "id": "18374541", "url": "https://pubmed.ncbi.nlm.nih.gov/18374541" }, { "database": "PubMed", "id": "20052757", "url": "https://pubmed.ncbi.nlm.nih.gov/20052757" }, { "database": "PubMed", "id": "20149136", "url": "https://pubmed.ncbi.nlm.nih.gov/20149136" }, { "database": "PubMed", "id": "20161842", "url": "https://pubmed.ncbi.nlm.nih.gov/20161842" }, { "database": "PubMed", "id": "20212043", "url": "https://pubmed.ncbi.nlm.nih.gov/20212043" }, { "database": "PubMed", "id": "20688159", "url": "https://pubmed.ncbi.nlm.nih.gov/20688159" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "20934465", "url": "https://pubmed.ncbi.nlm.nih.gov/20934465" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "22487193", "url": "https://pubmed.ncbi.nlm.nih.gov/22487193" }, { "database": "PubMed", "id": "23487407", "url": "https://pubmed.ncbi.nlm.nih.gov/23487407" }, { "database": "PubMed", "id": "23529931", "url": "https://pubmed.ncbi.nlm.nih.gov/23529931" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24625973", "url": "https://pubmed.ncbi.nlm.nih.gov/24625973" }, { "database": "PubMed", "id": "24732797", "url": "https://pubmed.ncbi.nlm.nih.gov/24732797" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "24929361", "url": "https://pubmed.ncbi.nlm.nih.gov/24929361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26659599", "url": "https://pubmed.ncbi.nlm.nih.gov/26659599" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "29097117", "url": "https://pubmed.ncbi.nlm.nih.gov/29097117" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" }, { "database": "PubMed", "id": "29545175", "url": "https://pubmed.ncbi.nlm.nih.gov/29545175" }, { "database": "PubMed", "id": "29917268", "url": "https://pubmed.ncbi.nlm.nih.gov/29917268" }, { "database": "PubMed", "id": "30368668", "url": "https://pubmed.ncbi.nlm.nih.gov/30368668" }, { "database": "PubMed", "id": "30909892", "url": "https://pubmed.ncbi.nlm.nih.gov/30909892" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "11756411", "url": "https://pubmed.ncbi.nlm.nih.gov/11756411" }, { "database": "PubMed", "id": "16630891", "url": "https://pubmed.ncbi.nlm.nih.gov/16630891" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Ser259", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 268, "end_pos": 268, "kinase_uniprot_canonical_ac": "P04049-1", "kinase_gene_name": "RAF1", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "site_lbl": "Thr268", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 268, "end_pos": 268, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "15642359", "url": "https://pubmed.ncbi.nlm.nih.gov/15642359" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" } ], "site_lbl": "Thr268", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and MAPK1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11027949", "url": "https://pubmed.ncbi.nlm.nih.gov/11027949" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "7694366", "url": "https://pubmed.ncbi.nlm.nih.gov/7694366" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "8607981", "url": "https://pubmed.ncbi.nlm.nih.gov/8607981" }, { "database": "PubMed", "id": "9001246", "url": "https://pubmed.ncbi.nlm.nih.gov/9001246" }, { "database": "PubMed", "id": "9272646", "url": "https://pubmed.ncbi.nlm.nih.gov/9272646" } ], "site_lbl": "Ser43", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 499, "end_pos": 499, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" } ], "site_lbl": "Ser499", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "10801873", "url": "https://pubmed.ncbi.nlm.nih.gov/10801873" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "IntAct", "id": "P04049", "url": "https://www.ebi.ac.uk/intact/interactors/id:P04049*" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "24330068", "url": "https://pubmed.ncbi.nlm.nih.gov/24330068" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "11041243", "url": "https://pubmed.ncbi.nlm.nih.gov/11041243" }, { "database": "PubMed", "id": "19298812", "url": "https://pubmed.ncbi.nlm.nih.gov/19298812" }, { "database": "PubMed", "id": "19595761", "url": "https://pubmed.ncbi.nlm.nih.gov/19595761" }, { "database": "PubMed", "id": "22182854", "url": "https://pubmed.ncbi.nlm.nih.gov/22182854" }, { "database": "PubMed", "id": "23554907", "url": "https://pubmed.ncbi.nlm.nih.gov/23554907" }, { "database": "PubMed", "id": "24922062", "url": "https://pubmed.ncbi.nlm.nih.gov/24922062" }, { "database": "PubMed", "id": "26295714", "url": "https://pubmed.ncbi.nlm.nih.gov/26295714" }, { "database": "PubMed", "id": "27003818", "url": "https://pubmed.ncbi.nlm.nih.gov/27003818" }, { "database": "PubMed", "id": "27331409", "url": "https://pubmed.ncbi.nlm.nih.gov/27331409" }, { "database": "PubMed", "id": "29515772", "url": "https://pubmed.ncbi.nlm.nih.gov/29515772" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.8349614", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactions between Ras and Raf: key regulatory proteins in cellular transformation.", "journal": "Molecular reproduction and development", "date": "1995-12", "authors": "Marshall M", "reference": { "type": "PubMed", "id": "8607981", "url": "https://pubmed.ncbi.nlm.nih.gov/8607981" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and MAPK1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11027949", "url": "https://pubmed.ncbi.nlm.nih.gov/11027949" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "7694366", "url": "https://pubmed.ncbi.nlm.nih.gov/7694366" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "8607981", "url": "https://pubmed.ncbi.nlm.nih.gov/8607981" }, { "database": "PubMed", "id": "9001246", "url": "https://pubmed.ncbi.nlm.nih.gov/9001246" }, { "database": "PubMed", "id": "9272646", "url": "https://pubmed.ncbi.nlm.nih.gov/9272646" } ], "site_lbl": "Ser43", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.8607981", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The solution structure of the Raf-1 cysteine-rich domain: a novel ras and phospholipid binding site.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1996", "authors": "Mott H R, Carpenter J W, Zhong S, Ghosh S, Bell R M, Campbell S L", "reference": { "type": "PubMed", "id": "8710867", "url": "https://pubmed.ncbi.nlm.nih.gov/8710867" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8710867", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rheb interacts with Raf-1 kinase and may function to integrate growth factor- and protein kinase A-dependent signals.", "journal": "Molecular and cellular biology", "date": "1997", "authors": "Yee WM, Worley PF", "reference": { "type": "PubMed", "id": "9001246", "url": "https://pubmed.ncbi.nlm.nih.gov/9001246" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and MAPK1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11027949", "url": "https://pubmed.ncbi.nlm.nih.gov/11027949" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "7694366", "url": "https://pubmed.ncbi.nlm.nih.gov/7694366" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "8607981", "url": "https://pubmed.ncbi.nlm.nih.gov/8607981" }, { "database": "PubMed", "id": "9001246", "url": "https://pubmed.ncbi.nlm.nih.gov/9001246" }, { "database": "PubMed", "id": "9272646", "url": "https://pubmed.ncbi.nlm.nih.gov/9272646" } ], "site_lbl": "Ser43", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.9001246", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Raf-1 Ser621 kinase activity from NIH 3T3 cells as AMP-activated protein kinase.", "journal": "FEBS letters", "date": "1997", "authors": "Sprenkle AB, Davies SP, Carling D, Hardie DG, Sturgill TW", "reference": { "type": "PubMed", "id": "9091312", "url": "https://pubmed.ncbi.nlm.nih.gov/9091312" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "P04049-1", "kinase_gene_name": "RAF1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "9091312", "url": "https://pubmed.ncbi.nlm.nih.gov/9091312" }, { "database": "PubMed", "id": "9710607", "url": "https://pubmed.ncbi.nlm.nih.gov/9710607" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "P17612-1", "kinase_gene_name": "PRKACA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "9091312", "url": "https://pubmed.ncbi.nlm.nih.gov/9091312" }, { "database": "PubMed", "id": "9710607", "url": "https://pubmed.ncbi.nlm.nih.gov/9710607" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "9091312", "url": "https://pubmed.ncbi.nlm.nih.gov/9091312" }, { "database": "PubMed", "id": "9710607", "url": "https://pubmed.ncbi.nlm.nih.gov/9710607" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.9091312", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cAMP-dependent protein kinase A is required for Schwann cell growth: interactions between the cAMP and neuregulin/tyrosine kinase pathways.", "journal": "Journal of neuroscience research", "date": "1997", "authors": "Kim HA, DeClue JE, Ratner N", "reference": { "type": "PubMed", "id": "9272646", "url": "https://pubmed.ncbi.nlm.nih.gov/9272646" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and MAPK1", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11027949", "url": "https://pubmed.ncbi.nlm.nih.gov/11027949" }, { "database": "PubMed", "id": "12801936", "url": "https://pubmed.ncbi.nlm.nih.gov/12801936" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "21734462", "url": "https://pubmed.ncbi.nlm.nih.gov/21734462" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "7694366", "url": "https://pubmed.ncbi.nlm.nih.gov/7694366" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" }, { "database": "PubMed", "id": "8607981", "url": "https://pubmed.ncbi.nlm.nih.gov/8607981" }, { "database": "PubMed", "id": "9001246", "url": "https://pubmed.ncbi.nlm.nih.gov/9001246" }, { "database": "PubMed", "id": "9272646", "url": "https://pubmed.ncbi.nlm.nih.gov/9272646" } ], "site_lbl": "Ser43", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.9272646", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "14-3-3 proteins are required for maintenance of Raf-1 phosphorylation and kinase activity.", "journal": "Molecular and cellular biology", "date": "1998", "authors": "Thorson JA, Yu LW, Hsu AL, Shih NY, Graves PR, Tanner JW, Allen PM, Piwnica-Worms H, Shaw AS", "reference": { "type": "PubMed", "id": "9710607", "url": "https://pubmed.ncbi.nlm.nih.gov/9710607" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "P04049-1", "kinase_gene_name": "RAF1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "9091312", "url": "https://pubmed.ncbi.nlm.nih.gov/9091312" }, { "database": "PubMed", "id": "9710607", "url": "https://pubmed.ncbi.nlm.nih.gov/9710607" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "P17612-1", "kinase_gene_name": "PRKACA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "9091312", "url": "https://pubmed.ncbi.nlm.nih.gov/9091312" }, { "database": "PubMed", "id": "9710607", "url": "https://pubmed.ncbi.nlm.nih.gov/9710607" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "9091312", "url": "https://pubmed.ncbi.nlm.nih.gov/9091312" }, { "database": "PubMed", "id": "9710607", "url": "https://pubmed.ncbi.nlm.nih.gov/9710607" } ], "site_lbl": "Ser621", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.9710607", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Oncogenes, growth factors and phorbol esters regulate Raf-1 through common mechanisms.", "journal": "Oncogene", "date": "1998", "authors": "Barnard D, Diaz B, Clawson D, Marshall M", "reference": { "type": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04049-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "RAF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2, PAK3 and PAK5", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "18465753", "url": "https://pubmed.ncbi.nlm.nih.gov/18465753" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "10712905", "url": "https://pubmed.ncbi.nlm.nih.gov/10712905" }, { "database": "PubMed", "id": "10801448", "url": "https://pubmed.ncbi.nlm.nih.gov/10801448" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11274179", "url": "https://pubmed.ncbi.nlm.nih.gov/11274179" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "11782426", "url": "https://pubmed.ncbi.nlm.nih.gov/11782426" }, { "database": "PubMed", "id": "11971957", "url": "https://pubmed.ncbi.nlm.nih.gov/11971957" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "15280158", "url": "https://pubmed.ncbi.nlm.nih.gov/15280158" }, { "database": "PubMed", "id": "15470067", "url": "https://pubmed.ncbi.nlm.nih.gov/15470067" }, { "database": "PubMed", "id": "15601627", "url": "https://pubmed.ncbi.nlm.nih.gov/15601627" }, { "database": "PubMed", "id": "15705600", "url": "https://pubmed.ncbi.nlm.nih.gov/15705600" }, { "database": "PubMed", "id": "15899852", "url": "https://pubmed.ncbi.nlm.nih.gov/15899852" }, { "database": "PubMed", "id": "16129686", "url": "https://pubmed.ncbi.nlm.nih.gov/16129686" }, { "database": "PubMed", "id": "16405965", "url": "https://pubmed.ncbi.nlm.nih.gov/16405965" }, { "database": "PubMed", "id": "17055484", "url": "https://pubmed.ncbi.nlm.nih.gov/17055484" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17277048", "url": "https://pubmed.ncbi.nlm.nih.gov/17277048" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "17785857", "url": "https://pubmed.ncbi.nlm.nih.gov/17785857" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "18775988", "url": "https://pubmed.ncbi.nlm.nih.gov/18775988" }, { "database": "PubMed", "id": "18821707", "url": "https://pubmed.ncbi.nlm.nih.gov/18821707" }, { "database": "PubMed", "id": "19133285", "url": "https://pubmed.ncbi.nlm.nih.gov/19133285" }, { "database": "PubMed", "id": "19288477", "url": "https://pubmed.ncbi.nlm.nih.gov/19288477" }, { "database": "PubMed", "id": "19710016", "url": "https://pubmed.ncbi.nlm.nih.gov/19710016" }, { "database": "PubMed", "id": "19717011", "url": "https://pubmed.ncbi.nlm.nih.gov/19717011" }, { "database": "PubMed", "id": "20015475", "url": "https://pubmed.ncbi.nlm.nih.gov/20015475" }, { "database": "PubMed", "id": "20141835", "url": "https://pubmed.ncbi.nlm.nih.gov/20141835" }, { "database": "PubMed", "id": "20509944", "url": "https://pubmed.ncbi.nlm.nih.gov/20509944" }, { "database": "PubMed", "id": "20685651", "url": "https://pubmed.ncbi.nlm.nih.gov/20685651" }, { "database": "PubMed", "id": "20868520", "url": "https://pubmed.ncbi.nlm.nih.gov/20868520" }, { "database": "PubMed", "id": "21596018", "url": "https://pubmed.ncbi.nlm.nih.gov/21596018" }, { "database": "PubMed", "id": "22096607", "url": "https://pubmed.ncbi.nlm.nih.gov/22096607" }, { "database": "PubMed", "id": "22158035", "url": "https://pubmed.ncbi.nlm.nih.gov/22158035" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "22880011", "url": "https://pubmed.ncbi.nlm.nih.gov/22880011" }, { "database": "PubMed", "id": "23653349", "url": "https://pubmed.ncbi.nlm.nih.gov/23653349" }, { "database": "PubMed", "id": "23987506", "url": "https://pubmed.ncbi.nlm.nih.gov/23987506" }, { "database": "PubMed", "id": "24023871", "url": "https://pubmed.ncbi.nlm.nih.gov/24023871" }, { "database": "PubMed", "id": "24568222", "url": "https://pubmed.ncbi.nlm.nih.gov/24568222" }, { "database": "PubMed", "id": "24853429", "url": "https://pubmed.ncbi.nlm.nih.gov/24853429" }, { "database": "PubMed", "id": "25204017", "url": "https://pubmed.ncbi.nlm.nih.gov/25204017" }, { "database": "PubMed", "id": "26058013", "url": "https://pubmed.ncbi.nlm.nih.gov/26058013" }, { "database": "PubMed", "id": "26100670", "url": "https://pubmed.ncbi.nlm.nih.gov/26100670" }, { "database": "PubMed", "id": "26154409", "url": "https://pubmed.ncbi.nlm.nih.gov/26154409" }, { "database": "PubMed", "id": "26242183", "url": "https://pubmed.ncbi.nlm.nih.gov/26242183" }, { "database": "PubMed", "id": "26333361", "url": "https://pubmed.ncbi.nlm.nih.gov/26333361" }, { "database": "PubMed", "id": "26442853", "url": "https://pubmed.ncbi.nlm.nih.gov/26442853" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "27527217", "url": "https://pubmed.ncbi.nlm.nih.gov/27527217" }, { "database": "PubMed", "id": "27534532", "url": "https://pubmed.ncbi.nlm.nih.gov/27534532" }, { "database": "PubMed", "id": "27999210", "url": "https://pubmed.ncbi.nlm.nih.gov/27999210" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "28947956", "url": "https://pubmed.ncbi.nlm.nih.gov/28947956" }, { "database": "PubMed", "id": "29662630", "url": "https://pubmed.ncbi.nlm.nih.gov/29662630" }, { "database": "PubMed", "id": "30586319", "url": "https://pubmed.ncbi.nlm.nih.gov/30586319" }, { "database": "PubMed", "id": "30971268", "url": "https://pubmed.ncbi.nlm.nih.gov/30971268" }, { "database": "PubMed", "id": "31091164", "url": "https://pubmed.ncbi.nlm.nih.gov/31091164" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "31285551", "url": "https://pubmed.ncbi.nlm.nih.gov/31285551" }, { "database": "PubMed", "id": "31541179", "url": "https://pubmed.ncbi.nlm.nih.gov/31541179" }, { "database": "PubMed", "id": "31638257", "url": "https://pubmed.ncbi.nlm.nih.gov/31638257" }, { "database": "PubMed", "id": "31883527", "url": "https://pubmed.ncbi.nlm.nih.gov/31883527" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" }, { "database": "PubMed", "id": "21917714", "url": "https://pubmed.ncbi.nlm.nih.gov/21917714" }, { "database": "PubMed", "id": "11733498", "url": "https://pubmed.ncbi.nlm.nih.gov/11733498" } ], "site_lbl": "Ser338", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 339, "end_pos": 339, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK1, PAK2 and PAK3", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "9234708", "url": "https://pubmed.ncbi.nlm.nih.gov/9234708" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "PubMed", "id": "15849194", "url": "https://pubmed.ncbi.nlm.nih.gov/15849194" }, { "database": "PubMed", "id": "17428866", "url": "https://pubmed.ncbi.nlm.nih.gov/17428866" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "9823899", "url": "https://pubmed.ncbi.nlm.nih.gov/9823899" } ], "site_lbl": "Ser339", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 340, "end_pos": 340, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "18064632", "url": "https://pubmed.ncbi.nlm.nih.gov/18064632" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr340", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 341, "end_pos": 341, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "PRO", "id": "P04049", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "10205168", "url": "https://pubmed.ncbi.nlm.nih.gov/10205168" }, { "database": "PubMed", "id": "11259591", "url": "https://pubmed.ncbi.nlm.nih.gov/11259591" }, { "database": "PubMed", "id": "11376654", "url": "https://pubmed.ncbi.nlm.nih.gov/11376654" }, { "database": "PubMed", "id": "12446733", "url": "https://pubmed.ncbi.nlm.nih.gov/12446733" }, { "database": "PubMed", "id": "12551923", "url": "https://pubmed.ncbi.nlm.nih.gov/12551923" }, { "database": "PubMed", "id": "14688280", "url": "https://pubmed.ncbi.nlm.nih.gov/14688280" }, { "database": "PubMed", "id": "17064357", "url": "https://pubmed.ncbi.nlm.nih.gov/17064357" }, { "database": "PubMed", "id": "17492661", "url": "https://pubmed.ncbi.nlm.nih.gov/17492661" }, { "database": "PubMed", "id": "22592532", "url": "https://pubmed.ncbi.nlm.nih.gov/22592532" }, { "database": "PubMed", "id": "23905676", "url": "https://pubmed.ncbi.nlm.nih.gov/23905676" }, { "database": "PubMed", "id": "26565813", "url": "https://pubmed.ncbi.nlm.nih.gov/26565813" }, { "database": "PubMed", "id": "28694330", "url": "https://pubmed.ncbi.nlm.nih.gov/28694330" }, { "database": "PubMed", "id": "31213532", "url": "https://pubmed.ncbi.nlm.nih.gov/31213532" }, { "database": "PubMed", "id": "7542586", "url": "https://pubmed.ncbi.nlm.nih.gov/7542586" }, { "database": "PubMed", "id": "9020159", "url": "https://pubmed.ncbi.nlm.nih.gov/9020159" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "16892053", "url": "https://pubmed.ncbi.nlm.nih.gov/16892053" } ], "site_lbl": "Tyr341", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 497, "end_pos": 497, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" } ], "site_lbl": "Ser497", "uniprot_canonical_ac": "P04049-1" }, { "start_pos": 499, "end_pos": 499, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P04049", "url": "https://www.uniprot.org/uniprotkb/P04049" }, { "database": "iPTMnet", "id": "P04049", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04049" }, { "database": "PubMed", "id": "9794231", "url": "https://pubmed.ncbi.nlm.nih.gov/9794231" }, { "database": "PubMed", "id": "8349614", "url": "https://pubmed.ncbi.nlm.nih.gov/8349614" } ], "site_lbl": "Ser499", "uniprot_canonical_ac": "P04049-1" } ], "record_id": "pubmed.9794231", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Posttranscriptional regulation of de novo lipogenesis by glucose-induced O-GlcNAcylation.", "journal": "Molecular cell", "date": "2021", "authors": "Tan W, Jiang P, Zhang W, Hu Z, Lin S, Chen L, Li Y, Peng C, Li Z, Sun A, Chen Y, Zhu W, Xue Y, Yao Y, Li X, Song Q, He F, Qin W, Pei H", "reference": { "type": "PubMed", "id": "33657401", "url": "https://pubmed.ncbi.nlm.nih.gov/33657401" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P78362-1", "protein_name": "SRSF protein kinase 2", "gene_name": "SRPK2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P78362", "url": "https://www.uniprot.org/uniprotkb/P78362" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 490, "start_aa": "Ser", "end_pos": 490, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser490", "evidence": [ { "id": "33657401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33657401" }, { "id": "P78362", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P78362" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "P78362", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P78362" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01011", "uniprot_canonical_ac": "P78362-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 492, "start_aa": "Thr", "end_pos": 492, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr492", "evidence": [ { "id": "33657401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33657401" }, { "id": "P78362", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P78362" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "P78362", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P78362" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01011", "uniprot_canonical_ac": "P78362-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 498, "start_aa": "Thr", "end_pos": 498, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr498", "evidence": [ { "id": "33657401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33657401" }, { "id": "P78362", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P78362" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "P78362", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P78362" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01011", "uniprot_canonical_ac": "P78362-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 640, "start_aa": "Ser", "end_pos": 640, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser640", "evidence": [ { "id": "33657401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33657401" }, { "id": "P78362", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P78362" }, { "id": "30059200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30059200" }, { "id": "P78362", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P78362" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P78362-1" } ], "record_id": "pubmed.33657401", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 4 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "exact_o_linked_glycan_sites", "count": 4 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 4 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "exact_o_linked_glycan_sites", "count": 4 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The pre-mRNA alternative splicing regulated by SRPK2: A new player in alcohol-associated liver disease?", "journal": "Hepatology (Baltimore, Md.)", "date": "2023-11-01", "authors": "Yang Zhihong, Ding Wen-Xing", "reference": { "type": "PubMed", "id": "37183907", "url": "https://pubmed.ncbi.nlm.nih.gov/37183907" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P78362-1", "protein_name": "SRSF protein kinase 2", "gene_name": "SRPK2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P78362", "url": "https://www.uniprot.org/uniprotkb/P78362" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37183907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SRPK2 Mediates HBV Core Protein Phosphorylation and Capsid Assembly via Docking Interaction.", "journal": "PLoS pathogens", "date": "2024-02", "authors": "Yip Ryan Pak Hong, Kwok Doris Ching Ying, Lai Louis Tung Faat, Ho Siu-Ming, Wong Ivan Chun Kit, Chan Chi-Ping, Lau Wilson Chun Yu, Ngo Jacky Chi Ki", "reference": { "type": "PubMed", "id": "38324561", "url": "https://pubmed.ncbi.nlm.nih.gov/38324561" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P78362-1", "protein_name": "SRSF protein kinase 2", "gene_name": "SRPK2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P78362", "url": "https://www.uniprot.org/uniprotkb/P78362" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38324561", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells.", "journal": "The Journal of cell biology", "date": "1998", "authors": "Wang HY, Lin W, Dyck JA, Yeakley JM, Songyang Z, Cantley LC, Fu XD", "reference": { "type": "PubMed", "id": "9472028", "url": "https://pubmed.ncbi.nlm.nih.gov/9472028" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P78362-1", "protein_name": "SRSF protein kinase 2", "gene_name": "SRPK2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P78362", "url": "https://www.uniprot.org/uniprotkb/P78362" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9472028", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a domain within MDMX-S that is responsible for its high affinity interaction with p53 and high-level expression in mammalian cells.", "journal": "J. Cell. Biochem.", "date": "2003", "authors": "Rallapalli Ravikumar, Strachan Gordon, Tuan Rocky S, Hall David J", "reference": { "type": "PubMed", "id": "12761890", "url": "https://pubmed.ncbi.nlm.nih.gov/12761890" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12761890", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of MdmX by CDK2/Cdc2(p34) is required for nuclear export of Mdm2.", "journal": "Oncogene", "date": "2005", "authors": "Elias B, Laine A, Ronai Z", "reference": { "type": "PubMed", "id": "15735705", "url": "https://pubmed.ncbi.nlm.nih.gov/15735705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 96, "end_pos": 96, "kinase_uniprot_canonical_ac": "P06493-1", "kinase_gene_name": "CDK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "15735705", "url": "https://pubmed.ncbi.nlm.nih.gov/15735705" } ], "site_lbl": "Ser96", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 96, "end_pos": 96, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "15735705", "url": "https://pubmed.ncbi.nlm.nih.gov/15735705" } ], "site_lbl": "Ser96", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.15735705", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Significance of HDMX-S (or MDM4) mRNA splice variant overexpression and HDMX gene amplification on primary soft tissue sarcoma prognosis.", "journal": "International journal of cancer", "date": "2005", "authors": "Bartel F, Schulz J, Bohnke A, Blumke K, Kappler M, Bache M, Schmidt H, Wurl P, Taubert H, Hauptmann S", "reference": { "type": "PubMed", "id": "15906355", "url": "https://pubmed.ncbi.nlm.nih.gov/15906355" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15906355", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of p53-MDMX interaction by casein kinase 1 alpha.", "journal": "Molecular and cellular biology", "date": "2005", "authors": "Chen L, Li C, Pan Y, Chen J", "reference": { "type": "PubMed", "id": "16024788", "url": "https://pubmed.ncbi.nlm.nih.gov/16024788" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 289, "end_pos": 289, "kinase_uniprot_canonical_ac": "P48729-1", "kinase_gene_name": "CSNK1A1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16024788", "url": "https://pubmed.ncbi.nlm.nih.gov/16024788" }, { "database": "PubMed", "id": "23028042", "url": "https://pubmed.ncbi.nlm.nih.gov/23028042" } ], "site_lbl": "Ser289", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.16024788", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA damage-induced phosphorylation of MdmX at serine 367 activates p53 by targeting MdmX for Mdm2-dependent degradation.", "journal": "Molecular and cellular biology", "date": "2005", "authors": "Okamoto K, Kashima K, Pereg Y, Ishida M, Yamazaki S, Nota A, Teunisse A, Migliorini D, Kitabayashi I, Marine JC, Prives C, Shiloh Y, Jochemsen AG, Taya Y", "reference": { "type": "PubMed", "id": "16227609", "url": "https://pubmed.ncbi.nlm.nih.gov/16227609" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK1 and CHEK2", "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" }, { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16511572", "url": "https://pubmed.ncbi.nlm.nih.gov/16511572" }, { "database": "IntAct", "id": "O15151", "url": "https://www.ebi.ac.uk/intact/interactors/id:O15151*" }, { "database": "PubMed", "id": "16511560", "url": "https://pubmed.ncbi.nlm.nih.gov/16511560" }, { "database": "PRO", "id": "O15151", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "16227609", "url": "https://pubmed.ncbi.nlm.nih.gov/16227609" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" }, { "database": "PubMed", "id": "19808970", "url": "https://pubmed.ncbi.nlm.nih.gov/19808970" }, { "database": "PubMed", "id": "22120712", "url": "https://pubmed.ncbi.nlm.nih.gov/22120712" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.16227609", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of an aberrantly spliced form of HDMX in human tumors: a new mechanism for HDM2 stabilization.", "journal": "Cancer Res.", "date": "2005", "authors": "Giglio Simona, Mancini Francesca, Gentiletti Francesca, Sparaco Giorgia, Felicioni Lara, Barassi Fabio, Martella Carla, Prodosmo Andrea, Iacovelli Stefano, Buttitta Fiamma, Farsetti Antonella, Soddu Silvia, Marchetti Antonio, Sacchi Ada, Pontecorvi Alfredo, Moretti Fabiola", "reference": { "type": "PubMed", "id": "16266988", "url": "https://pubmed.ncbi.nlm.nih.gov/16266988" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16266988", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential roles of ATM- and Chk2-mediated phosphorylations of Hdmx in response to DNA damage.", "journal": "Molecular and cellular biology", "date": "2006", "authors": "Pereg Y, Lam S, Teunisse A, Biton S, Meulmeester E, Mittelman L, Buscemi G, Okamoto K, Taya Y, Shiloh Y, Jochemsen AG", "reference": { "type": "PubMed", "id": "16943424", "url": "https://pubmed.ncbi.nlm.nih.gov/16943424" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00987-1", "protein_name": "E3 ubiquitin-protein ligase Mdm2", "gene_name": "MDM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 342, "end_pos": 342, "kinase_uniprot_canonical_ac": "Q13315-1", "kinase_gene_name": "ATM", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16943424", "url": "https://pubmed.ncbi.nlm.nih.gov/16943424" } ], "site_lbl": "Ser342", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "Q13315-1", "kinase_gene_name": "ATM", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16943424", "url": "https://pubmed.ncbi.nlm.nih.gov/16943424" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 403, "end_pos": 403, "kinase_uniprot_canonical_ac": "Q13315-1", "kinase_gene_name": "ATM", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "15788536", "url": "https://pubmed.ncbi.nlm.nih.gov/15788536" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "16511560", "url": "https://pubmed.ncbi.nlm.nih.gov/16511560" }, { "database": "PubMed", "id": "16943424", "url": "https://pubmed.ncbi.nlm.nih.gov/16943424" } ], "site_lbl": "Ser403", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 342, "end_pos": 342, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q00987", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00987" }, { "database": "PubMed", "id": "16943424", "url": "https://pubmed.ncbi.nlm.nih.gov/16943424" } ], "site_lbl": "Ser342", "uniprot_canonical_ac": "Q00987-1" } ], "record_id": "pubmed.16943424", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MDMX regulation of p53 response to ribosomal stress.", "journal": "The EMBO journal", "date": "2006", "authors": "Gilkes DM, Chen L, Chen J", "reference": { "type": "PubMed", "id": "17110929", "url": "https://pubmed.ncbi.nlm.nih.gov/17110929" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "O14757-1", "kinase_gene_name": "CHEK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "17110929", "url": "https://pubmed.ncbi.nlm.nih.gov/17110929" }, { "database": "PubMed", "id": "16511572", "url": "https://pubmed.ncbi.nlm.nih.gov/16511572" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.17110929", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of MDMX mediated by Akt leads to stabilization and induces 14-3-3 binding.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Lopez-Pajares V, Kim MM, Yuan ZM", "reference": { "type": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "O14757-1", "kinase_gene_name": "CHEK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "17110929", "url": "https://pubmed.ncbi.nlm.nih.gov/17110929" }, { "database": "PubMed", "id": "16511572", "url": "https://pubmed.ncbi.nlm.nih.gov/16511572" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "O96017-1", "kinase_gene_name": "CHEK2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "16511560", "url": "https://pubmed.ncbi.nlm.nih.gov/16511560" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "P31749-1", "kinase_gene_name": "AKT1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK1 and CHEK2", "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" }, { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16511572", "url": "https://pubmed.ncbi.nlm.nih.gov/16511572" }, { "database": "IntAct", "id": "O15151", "url": "https://www.ebi.ac.uk/intact/interactors/id:O15151*" }, { "database": "PubMed", "id": "16511560", "url": "https://pubmed.ncbi.nlm.nih.gov/16511560" }, { "database": "PRO", "id": "O15151", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "16227609", "url": "https://pubmed.ncbi.nlm.nih.gov/16227609" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" }, { "database": "PubMed", "id": "19808970", "url": "https://pubmed.ncbi.nlm.nih.gov/19808970" }, { "database": "PubMed", "id": "22120712", "url": "https://pubmed.ncbi.nlm.nih.gov/22120712" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.18356162", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation and degradation of MdmX is inhibited by Wip1 phosphatase in the DNA damage response.", "journal": "Cancer research", "date": "2009", "authors": "Zhang X, Lin L, Guo H, Yang J, Jones SN, Jochemsen A, Lu X", "reference": { "type": "PubMed", "id": "19808970", "url": "https://pubmed.ncbi.nlm.nih.gov/19808970" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 342, "end_pos": 342, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK2", "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" }, { "database": "PRO", "id": "O15151", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O15151" }, { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "19808970", "url": "https://pubmed.ncbi.nlm.nih.gov/19808970" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" } ], "site_lbl": "Ser342", "uniprot_canonical_ac": "O15151-1" }, { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK1 and CHEK2", "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" }, { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16511572", "url": "https://pubmed.ncbi.nlm.nih.gov/16511572" }, { "database": "IntAct", "id": "O15151", "url": "https://www.ebi.ac.uk/intact/interactors/id:O15151*" }, { "database": "PubMed", "id": "16511560", "url": "https://pubmed.ncbi.nlm.nih.gov/16511560" }, { "database": "PRO", "id": "O15151", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "16227609", "url": "https://pubmed.ncbi.nlm.nih.gov/16227609" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" }, { "database": "PubMed", "id": "19808970", "url": "https://pubmed.ncbi.nlm.nih.gov/19808970" }, { "database": "PubMed", "id": "22120712", "url": "https://pubmed.ncbi.nlm.nih.gov/22120712" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.19808970", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Abnormal MDMX degradation in tumor cells due to ARF deficiency.", "journal": "Oncogene", "date": "2012", "authors": "Li X, Gilkes D, Li B, Cheng Q, Pernazza D, Lawrence H, Lawrence N, Chen J", "reference": { "type": "PubMed", "id": "22120712", "url": "https://pubmed.ncbi.nlm.nih.gov/22120712" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK1 and CHEK2", "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" }, { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16511572", "url": "https://pubmed.ncbi.nlm.nih.gov/16511572" }, { "database": "IntAct", "id": "O15151", "url": "https://www.ebi.ac.uk/intact/interactors/id:O15151*" }, { "database": "PubMed", "id": "16511560", "url": "https://pubmed.ncbi.nlm.nih.gov/16511560" }, { "database": "PRO", "id": "O15151", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O15151" }, { "database": "PubMed", "id": "16163388", "url": "https://pubmed.ncbi.nlm.nih.gov/16163388" }, { "database": "PubMed", "id": "16227609", "url": "https://pubmed.ncbi.nlm.nih.gov/16227609" }, { "database": "PubMed", "id": "18356162", "url": "https://pubmed.ncbi.nlm.nih.gov/18356162" }, { "database": "PubMed", "id": "19808970", "url": "https://pubmed.ncbi.nlm.nih.gov/19808970" }, { "database": "PubMed", "id": "22120712", "url": "https://pubmed.ncbi.nlm.nih.gov/22120712" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" } ], "site_lbl": "Ser367", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.22120712", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Casein kinase 1alpha regulates an MDMX intramolecular interaction to stimulate p53 binding.", "journal": "Molecular and cellular biology", "date": "2012", "authors": "Wu S, Chen L, Becker A, Schonbrunn E, Chen J", "reference": { "type": "PubMed", "id": "23028042", "url": "https://pubmed.ncbi.nlm.nih.gov/23028042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 289, "end_pos": 289, "kinase_uniprot_canonical_ac": "P48729-1", "kinase_gene_name": "CSNK1A1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "16024788", "url": "https://pubmed.ncbi.nlm.nih.gov/16024788" }, { "database": "PubMed", "id": "23028042", "url": "https://pubmed.ncbi.nlm.nih.gov/23028042" } ], "site_lbl": "Ser289", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.23028042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AMP-activated protein kinase induces p53 by phosphorylating MDMX and inhibiting its activity.", "journal": "Molecular and cellular biology", "date": "2014", "authors": "He G, Zhang YW, Lee JH, Zeng SX, Wang YV, Luo Z, Dong XC, Viollet B, Wahl GM, Lu H", "reference": { "type": "PubMed", "id": "24190973", "url": "https://pubmed.ncbi.nlm.nih.gov/24190973" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 342, "end_pos": 342, "kinase_uniprot_canonical_ac": "P54646-1", "kinase_gene_name": "PRKAA2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "24190973", "url": "https://pubmed.ncbi.nlm.nih.gov/24190973" } ], "site_lbl": "Ser342", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.24190973", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of how stress-induced MDMX phosphorylation activates p53.", "journal": "Oncogene", "date": "2016-04-14", "authors": "Chen X, Gohain N, Zhan C, Lu W-Y, Pazgier M, Lu W", "reference": { "type": "PubMed", "id": "26148237", "url": "https://pubmed.ncbi.nlm.nih.gov/26148237" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 99, "end_pos": 99, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "26148237", "url": "https://pubmed.ncbi.nlm.nih.gov/26148237" } ], "site_lbl": "Tyr99", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.26148237", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human epidermal growth factor receptor 4 (Her4) Suppresses p53 Protein via Targeting the MDMX-MDM2 Protein Complex: IMPLICATION OF A NOVEL MDMX SER-314 PHOSPHOSITE.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Gerarduzzi C, de Polo A, Liu XS, El Kharbili M, Little JB, Yuan ZM", "reference": { "type": "PubMed", "id": "27777309", "url": "https://pubmed.ncbi.nlm.nih.gov/27777309" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 314, "end_pos": 314, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O15151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O15151" }, { "database": "PubMed", "id": "27777309", "url": "https://pubmed.ncbi.nlm.nih.gov/27777309" } ], "site_lbl": "Ser314", "uniprot_canonical_ac": "O15151-1" } ], "record_id": "pubmed.27777309", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Germline mutation of MDM4, a major p53 regulator, in a familial syndrome of defective telomere maintenance.", "journal": "Science advances", "date": "2020", "authors": "Toufektchan E, Lejour V, Durand R, Giri N, Draskovic I, Bardot B, Laplante P, Jaber S, Alter BP, Londono-Vallejo JA, Savage SA, Toledo F", "reference": { "type": "PubMed", "id": "32300648", "url": "https://pubmed.ncbi.nlm.nih.gov/32300648" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32300648", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MDM4 was associated with poor prognosis and tumor-immune infiltration of cancers.", "journal": "European journal of medical research", "date": "2024-01-27", "authors": "Liu Jie, Yang Jie, Pan Qilong, Wang Xiangyu, Wang Xinyin, Chen Han, Zheng Xiaoling, Huang Qingling", "reference": { "type": "PubMed", "id": "38281029", "url": "https://pubmed.ncbi.nlm.nih.gov/38281029" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38281029", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "miR-34c-5p inhibited fibroblast proliferation, differentiation and epithelial-mesenchymal transition in benign airway stenosis via MDMX/p53 pathway.", "journal": "Functional & integrative genomics", "date": "2024-02-20", "authors": "Wei Jinmei, Chen Yan, Feng Tingmei, Wei Yuihui, Yang Caizhen, Zhang Changwen, Li Wentao, Liu Guangnan", "reference": { "type": "PubMed", "id": "38374244", "url": "https://pubmed.ncbi.nlm.nih.gov/38374244" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38374244", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Long-Read MDM4 Sequencing Reveals Aberrant Isoform Landscape in Metastatic Melanomas.", "journal": "International journal of molecular sciences", "date": "2024-08-30", "authors": "Patrick Nehaal, Markey Michael", "reference": { "type": "PubMed", "id": "39273363", "url": "https://pubmed.ncbi.nlm.nih.gov/39273363" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15151-1", "protein_name": "Protein Mdm4", "gene_name": "MDM4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15151", "url": "https://www.uniprot.org/uniprotkb/O15151" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39273363", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]