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Biotechnol.", "date": "2010", "authors": "Choi Yun Hee, Choi Hye Jeong, Kim Dooil, Uhm Ki-Nam, Kim Hyung-Kwoun", "reference": { "type": "PubMed", "id": "20111861", "url": "https://pubmed.ncbi.nlm.nih.gov/20111861" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12068-1", "protein_name": "NADPH-dependent methylglyoxal reductase GRE2", "gene_name": "GRE2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12068", "url": "https://www.uniprot.org/uniprotkb/Q12068" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20111861", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Highly efficient and stereoselective biosynthesis of (2S,5S)-hexanediol with a dehydrogenase from Saccharomyces cerevisiae.", "journal": "Org. 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Cell Biol.", "date": "1993", "authors": "Whitters E A, Cleves A E, McGee T P, Skinner H B, Bankaitis V A", "reference": { "type": "PubMed", "id": "8314848", "url": "https://pubmed.ncbi.nlm.nih.gov/8314848" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32368-1", "protein_name": "Phosphatidylinositol-3-phosphatase SAC1", "gene_name": "SAC1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P32368", "url": "https://www.uniprot.org/uniprotkb/P32368" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8314848", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and enzymatic properties of the AAA protein Drg1p from Saccharomyces cerevisiae. 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Loss of oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "P32794", "url": "https://www.uniprot.org/uniprotkb/P32794" }, { "database": "PubMed", "id": "12006565", "url": "https://pubmed.ncbi.nlm.nih.gov/12006565" } ], "uniprot_canonical_ac": "P32794-1" }, { "start_pos": 725, "end_pos": 725, "sequence_org": "V", "sequence_mut": "E", "comment": "In drg1-1; slight loss of ATPase activity. No effect on affinity for ATP or oligomerization. Resistant to diazaborine-mediated growth inhibition. 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At the restrictive temperature of 37 degrees Celsius, impaired growth. Severe loss of ATPase activity, homohexamer formation and 60S ribosomal subunit maturation. Prevents the release of shuttling proteins NOG1, RLP24 and ARX1 from cytoplasmic pre-60S particles resulting in their cytoplasmic accumulation. Loss of interaction with RLP24 and pre-60S particles. 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No defect in RLP24 release from pre-60S ribosomal particles in the absence or in the presence of diazaborine.", "evidence": [ { "database": "UniProtKB", "id": "P32794", "url": "https://www.uniprot.org/uniprotkb/P32794" }, { "database": "PubMed", "id": "12006565", "url": "https://pubmed.ncbi.nlm.nih.gov/12006565" }, { "database": "PubMed", "id": "24371142", "url": "https://pubmed.ncbi.nlm.nih.gov/24371142" } ], "uniprot_canonical_ac": "P32794-1" }, { "start_pos": 725, "end_pos": 725, "sequence_org": "V", "sequence_mut": "L", "comment": "In drg1-4; resistant to diazaborine-mediated growth inhibition.", "evidence": [ { "database": "UniProtKB", "id": "P32794", "url": "https://www.uniprot.org/uniprotkb/P32794" }, { "database": "PubMed", "id": "24371142", "url": "https://pubmed.ncbi.nlm.nih.gov/24371142" } ], "uniprot_canonical_ac": "P32794-1" } ], "record_id": "pubmed.24371142", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"referenced_proteins": [ { "uniprot_canonical_ac": "P32794-1", "protein_name": "ATPase family gene 2 protein", "gene_name": "AFG2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P32794", "url": "https://www.uniprot.org/uniprotkb/P32794" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8109176", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Isolation and characterization of the nuclear-coded gene.", "journal": "J. Biol. Chem.", "date": "1993", "authors": "Taanman J W, Capaldi R A", "reference": { "type": "PubMed", "id": "8395517", "url": "https://pubmed.ncbi.nlm.nih.gov/8395517" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32799-1", "protein_name": "Cytochrome c oxidase subunit 13, mitochondrial", "gene_name": "COX13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P32799", "url": "https://www.uniprot.org/uniprotkb/P32799" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8395517", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of a class I alpha1,2-mannosidase involved in N-glycan processing and endoplasmic reticulum quality control.", "journal": "EMBO J.", "date": "2000", "authors": "Vall\u00e9e F, Lipari F, Yip P, Sleno B, Herscovics A, Howell P L", "reference": { "type": "PubMed", "id": "10675327", "url": "https://pubmed.ncbi.nlm.nih.gov/10675327" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32906-1", "protein_name": "Endoplasmic reticulum mannosyl-oligosaccharide 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glycoprotein biosynthesis in Saccharomyces cerevisiae. Isolation and characterization of the gene encoding a specific processing alpha-mannosidase.", "journal": "J. Biol. Chem.", "date": "1991", "authors": "Camirand A, Heysen A, Grondin B, Herscovics A", "reference": { "type": "PubMed", "id": "1714453", "url": "https://pubmed.ncbi.nlm.nih.gov/1714453" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32906-1", "protein_name": "Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase", "gene_name": "MNS1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P32906", "url": "https://www.uniprot.org/uniprotkb/P32906" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1714453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The amino terminal domain from Mrt4 protein can functionally replace the RNA binding domain of the ribosomal P0 protein.", "journal": "Nucleic acids research", "date": "2009-06", "authors": "Rodr\u00edguez-Mateos Mar\u00eda, Abia David, Garc\u00eda-G\u00f3mez Juan J, Morreale Antonio, de la Cruz Jes\u00fas, Santos Cruz, Remacha Miguel, Ballesta Juan P G", "reference": { "type": "PubMed", "id": "19346338", "url": "https://pubmed.ncbi.nlm.nih.gov/19346338" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33201-1", "protein_name": "Ribosome assembly factor MRT4", "gene_name": "MRT4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P33201", "url": "https://www.uniprot.org/uniprotkb/P33201" } ], "common_name": 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Commun.", "date": "2014", "authors": "Leidig Christoph, Thoms Matthias, Holdermann Iris, Bradatsch Bettina, Berninghausen Otto, Bange Gert, Sinning Irmgard, Hurt Ed, Beckmann Roland", "reference": { "type": "PubMed", "id": "24662372", "url": "https://pubmed.ncbi.nlm.nih.gov/24662372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33201-1", "protein_name": "Ribosome assembly factor MRT4", "gene_name": "MRT4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25382-1", "protein_name": "Ribosome assembly protein 4", "gene_name": "RSA4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P33201", "url": "https://www.uniprot.org/uniprotkb/P33201" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.24662372", "abstract": "", "glycosylation": [], 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Chem.", "date": "1973", "authors": "Palmieri R, Yue R H, Jacobs H K, Maland L, Wu L, Kuby S A", "reference": { "type": "PubMed", "id": "4576138", "url": "https://pubmed.ncbi.nlm.nih.gov/4576138" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36010-1", "protein_name": "Nucleoside diphosphate kinase", "gene_name": "YNK1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36010", "url": "https://www.uniprot.org/uniprotkb/P36010" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.4576138", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Aleksandra, Haltiwanger Robert S, Lennarz William J", "reference": { "type": "PubMed", "id": "15507441", "url": "https://pubmed.ncbi.nlm.nih.gov/15507441" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P39007-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3", "gene_name": "STT3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P39007", "url": "https://www.uniprot.org/uniprotkb/P39007" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "High mannose", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) 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