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"authors": "Ron Mily, Alandete Saez Monica, Eshed Williams Leor, Fletcher Jennifer C, McCormick Sheila", "reference": { "type": "PubMed", "id": "20478994", "url": "https://pubmed.ncbi.nlm.nih.gov/20478994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFP1-1", "protein_name": "Probable E3 ubiquitin-protein ligase ARI14", "gene_name": "ARI14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFP2-1", "protein_name": "Protein KOKOPELLI", "gene_name": "KPL", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFP1", "url": "https://www.uniprot.org/uniprotkb/Q9FFP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20478994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Opin. Plant Biol.", "date": "2003", "authors": "Kruger Nicholas J, von Schaewen Antje", "reference": { "type": "PubMed", "id": "12753973", "url": "https://pubmed.ncbi.nlm.nih.gov/12753973" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFR3-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic", "gene_name": "PGD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWA3-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 2", "gene_name": "PGD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SH69-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic", "gene_name": "PGD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFR3", "url": "https://www.uniprot.org/uniprotkb/Q9FFR3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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Holding David R, Tan Bao Cai, Latshaw Susan P, Liu Juan, Suzuki Masaharu, Li Li, O'Brien Brent A, Fajardo Diego S, Wroclawska Ewa, Tseung Chi-Wah, Lai Jinsheng, Hunter Charles T, Avigne Wayne T, Baier John, Messing Joachim, Hannah L Curtis, Koch Karen E, Becraft Philip W, Larkins Brian A, McCarty Donald R", "reference": { "type": "PubMed", "id": "17490480", "url": "https://pubmed.ncbi.nlm.nih.gov/17490480" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFR3-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic", "gene_name": "PGD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWA3-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 2", "gene_name": "PGD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SH69-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic", "gene_name": "PGD1", "tax_name": "Mouse-ear cress" } ], "species": [ { 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Behav.", "date": "2016", "authors": "Lutterbey Marie-Christin, von Schaewen Antje", "reference": { "type": "PubMed", "id": "27366940", "url": "https://pubmed.ncbi.nlm.nih.gov/27366940" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFR3-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic", "gene_name": "PGD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWA3-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 2", "gene_name": "PGD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SH69-1", "protein_name": "6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic", "gene_name": "PGD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFR3", "url": "https://www.uniprot.org/uniprotkb/Q9FFR3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.27366940", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tethering complexes in the Arabidopsis endomembrane system.", "journal": "Front. Cell Dev. Biol.", "date": "2016", "authors": "Vuka\u0161inovi\u0107 Nemanja, \u017d\u00e1rsk\u00fd Viktor", "reference": { "type": "PubMed", "id": "27243010", "url": "https://pubmed.ncbi.nlm.nih.gov/27243010" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFX6-1", "protein_name": "Exocyst complex component EXO70C2", "gene_name": "EXO70C2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FY95-1", "protein_name": "Exocyst complex component EXO70C1", "gene_name": "EXO70C1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFX6", "url": "https://www.uniprot.org/uniprotkb/Q9FFX6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.27243010", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"uniprot_canonical_ac": "Q9FFY9-1", "protein_name": "Telomere repeat-binding protein 4", "gene_name": "TRP4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFY9", "url": "https://www.uniprot.org/uniprotkb/Q9FFY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11513850", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 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cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 607, "end_pos": 607, "sequence_org": "R", "sequence_mut": "G", "comment": "60% decrease in telomere binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFY9", "url": "https://www.uniprot.org/uniprotkb/Q9FFY9" }, { "database": "PubMed", "id": "17272298", "url": "https://pubmed.ncbi.nlm.nih.gov/17272298" } ], "uniprot_canonical_ac": "Q9FFY9-1" }, { "start_pos": 607, "end_pos": 607, "sequence_org": "R", "sequence_mut": "I", "comment": "80% decrease in telomere binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFY9", "url": "https://www.uniprot.org/uniprotkb/Q9FFY9" }, { "database": "PubMed", "id": "17272298", "url": "https://pubmed.ncbi.nlm.nih.gov/17272298" } ], "uniprot_canonical_ac": "Q9FFY9-1" } ], "record_id": "pubmed.17272298", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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High-affinity transport activity, intragenic control of expression, and early flowering mutant phenotype.", "journal": "Plant physiology", "date": "2007-01", "authors": "Sivitz Alicia B, Reinders Anke, Johnson Meghan E, Krentz Anthony D, Grof Christopher P L, Perroux Jai M, Ward John M", "reference": { "type": "PubMed", "id": "17098854", "url": "https://pubmed.ncbi.nlm.nih.gov/17098854" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FG00-1", "protein_name": "Sucrose transport protein SUC9", "gene_name": "SUC9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG00", "url": "https://www.uniprot.org/uniprotkb/Q9FG00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17098854", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The plant Spc98p homologue colocalizes with gamma-tubulin at microtubule nucleation sites and is required for microtubule nucleation.", "journal": "J. Cell Sci.", "date": "2002", "authors": "Erhardt Mathieu, Stoppin-Mellet Virginie, Campagne Sarah, Canaday Jean, Mutterer J\u00e9r\u00f4me, Fabian Tanja, Sauter Margret, Muller Thierry, Peter Christine, Lambert Anne-Marie, Schmit Anne-Catherine", "reference": { "type": "PubMed", "id": "12006626", "url": "https://pubmed.ncbi.nlm.nih.gov/12006626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FG37-1", "protein_name": "Gamma-tubulin complex component 3", "gene_name": "GCP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG37", "url": "https://www.uniprot.org/uniprotkb/Q9FG37" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12006626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development.", "journal": "Developmental cell", "date": "2011-02-15", "authors": "Ueda Minako, Zhang Zhongjuan, Laux Thomas", "reference": { "type": "PubMed", "id": "21316593", "url": "https://pubmed.ncbi.nlm.nih.gov/21316593" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FG77-1", "protein_name": "Probable WRKY transcription factor 2", "gene_name": "WRKY2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6X7J4-1", "protein_name": "WUSCHEL-related homeobox 9", "gene_name": "HB-3; 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Biophys. 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Developmental and light effects on the accumulation of FtsH protease in Arabidopsis chloroplasts -- implications for thylakoid formation and photosystem II maintenance.", "journal": "Plant J.", "date": "2005", "authors": "Zaltsman Adi, Feder Ari, Adam Zach", "reference": { "type": "PubMed", "id": "15918877", "url": "https://pubmed.ncbi.nlm.nih.gov/15918877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FH02-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 5, chloroplastic", "gene_name": "FTSH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39102-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 1, chloroplastic", "gene_name": "FTSH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80860-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 2, chloroplastic", "gene_name": "FTSH2; VAR2", "tax_name": "Mouse-ear cress" } ], "species": [ { 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes.", "journal": "Plant Physiol.", "date": "2005", "authors": "Yu Fei, Park Sungsoon, Rodermel Steven R", "reference": { "type": "PubMed", "id": "16040665", "url": "https://pubmed.ncbi.nlm.nih.gov/16040665" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FH02-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 5, chloroplastic", "gene_name": "FTSH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39102-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 1, chloroplastic", "gene_name": "FTSH1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH02", "url": "https://www.uniprot.org/uniprotkb/Q9FH02" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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