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Cell Biol.", "date": "2003", "authors": "Katzmann David J, Stefan Christopher J, Babst Markus, Emr Scott D", "reference": { "type": "PubMed", "id": "12900393", "url": "https://pubmed.ncbi.nlm.nih.gov/12900393" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25604-1", "protein_name": "Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease", "gene_name": "STP22", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40343-1", "protein_name": "Vacuolar protein sorting-associated protein 27", "gene_name": "VPS27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02767-1", "protein_name": "Vacuolar protein sorting-associated protein 28", "gene_name": "VPS28", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P25604", "url": "https://www.uniprot.org/uniprotkb/P25604" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12900393", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural insights into endosomal sorting complex required for transport (ESCRT-I) recognition of ubiquitinated proteins.", "journal": "J. Biol. Chem.", "date": "2004", "authors": "Teo Hsiangling, Veprintsev Dmitry B, Williams Roger L", "reference": { "type": "PubMed", "id": "15044434", "url": "https://pubmed.ncbi.nlm.nih.gov/15044434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25604-1", "protein_name": "Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease", "gene_name": "STP22", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P25604", "url": "https://www.uniprot.org/uniprotkb/P25604" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15044434", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Cell. 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"authors": "Noueiry Amine O, Diez Juana, Falk Shaun P, Chen Jianbo, Ahlquist Paul", "reference": { "type": "PubMed", "id": "12773554", "url": "https://pubmed.ncbi.nlm.nih.gov/12773554" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25644-1", "protein_name": "Deadenylation-dependent mRNA-decapping factor PAT1", "gene_name": "PAT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P25644", "url": "https://www.uniprot.org/uniprotkb/P25644" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12773554", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Autoinhibition and activation mechanisms of the eukaryotic lipid flippase Drs2p-Cdc50p.", 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Chem.", "date": "1999", "authors": "Marsischky G T, Lee S, Griffith J, Kolodner R D", "reference": { "type": "PubMed", "id": "10066781", "url": "https://pubmed.ncbi.nlm.nih.gov/10066781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25847-1", "protein_name": "DNA mismatch repair protein MSH2", "gene_name": "MSH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03834-1", "protein_name": "DNA mismatch repair protein MSH6", "gene_name": "MSH6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P25847", "url": "https://www.uniprot.org/uniprotkb/P25847" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10066781", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Defective in MMR and in NHTR.", "evidence": [ { "database": "UniProtKB", "id": "P25847", "url": "https://www.uniprot.org/uniprotkb/P25847" }, { "database": "PubMed", "id": "10077621", "url": "https://pubmed.ncbi.nlm.nih.gov/10077621" }, { "database": "PubMed", "id": "9819445", "url": "https://pubmed.ncbi.nlm.nih.gov/9819445" } ], "uniprot_canonical_ac": "P25847-1" }, { "start_pos": 693, "end_pos": 693, "sequence_org": "G", "sequence_mut": "S", "comment": "Has a dominant negative mutator effect.", "evidence": [ { "database": "UniProtKB", "id": "P25847", "url": "https://www.uniprot.org/uniprotkb/P25847" }, { "database": "PubMed", "id": "10077621", "url": "https://pubmed.ncbi.nlm.nih.gov/10077621" }, { "database": "PubMed", "id": "9819445", "url": "https://pubmed.ncbi.nlm.nih.gov/9819445" } ], "uniprot_canonical_ac": "P25847-1" }, { "start_pos": 694, "end_pos": 694, "sequence_org": "K", "sequence_mut": "A", "comment": "Impairs ATP binding; reduces catalytic activity 1.6-fold for ATP hydrolysis. Has a dominant negative mutator effect.", "evidence": [ { "database": "UniProtKB", "id": "P25847", "url": "https://www.uniprot.org/uniprotkb/P25847" }, { "database": "PubMed", "id": "10077621", "url": "https://pubmed.ncbi.nlm.nih.gov/10077621" }, { "database": "PubMed", "id": "16214425", "url": "https://pubmed.ncbi.nlm.nih.gov/16214425" }, { "database": "PubMed", "id": "16600868", "url": "https://pubmed.ncbi.nlm.nih.gov/16600868" } ], "uniprot_canonical_ac": "P25847-1" }, { "start_pos": 694, "end_pos": 694, "sequence_org": "K", "sequence_mut": "R", "comment": "Defective in MMR and in NHTR.", "evidence": [ { "database": "UniProtKB", "id": "P25847", "url": "https://www.uniprot.org/uniprotkb/P25847" }, { "database": "PubMed", "id": "10077621", "url": "https://pubmed.ncbi.nlm.nih.gov/10077621" }, { "database": "PubMed", "id": "16214425", "url": "https://pubmed.ncbi.nlm.nih.gov/16214425" }, { "database": "PubMed", "id": "16600868", "url": "https://pubmed.ncbi.nlm.nih.gov/16600868" } ], "uniprot_canonical_ac": "P25847-1" }, { "start_pos": 695, "end_pos": 695, "sequence_org": "S", "sequence_mut": "A", "comment": "Has a dominant negative mutator effect.", "evidence": [ { "database": "UniProtKB", "id": "P25847", "url": "https://www.uniprot.org/uniprotkb/P25847" }, { "database": "PubMed", "id": "10077621", "url": "https://pubmed.ncbi.nlm.nih.gov/10077621" } ], "uniprot_canonical_ac": "P25847-1" } ], "record_id": "pubmed.10077621", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical characterization of the interaction between the Saccharomyces cerevisiae MSH2-MSH6 complex and mispaired bases in DNA.", "journal": "J. 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Chem.", "date": "1999", "authors": "Marsischky G T, Kolodner R D", "reference": { "type": "PubMed", "id": "10480869", "url": "https://pubmed.ncbi.nlm.nih.gov/10480869" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25847-1", "protein_name": "DNA mismatch repair protein MSH2", "gene_name": "MSH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03834-1", "protein_name": "DNA mismatch repair protein MSH6", "gene_name": "MSH6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P25847", "url": "https://www.uniprot.org/uniprotkb/P25847" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10480869", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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