[ { "title": "AtGRXcp, an Arabidopsis chloroplastic glutaredoxin, is critical for protection against protein oxidative damage.", "journal": "The Journal of biological chemistry", "date": "2006-09-08", "authors": "Cheng Ning-Hui, Liu Jian-Zhong, Brock Amanda, Nelson Richard S, Hirschi Kendal D", "reference": { "type": "PubMed", "id": "16829529", "url": "https://pubmed.ncbi.nlm.nih.gov/16829529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84Y95-1", "protein_name": "Monothiol glutaredoxin-S14, chloroplastic", "gene_name": "GRXS14", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84Y95", "url": "https://www.uniprot.org/uniprotkb/Q84Y95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 97, "end_pos": 97, "sequence_org": "C", "sequence_mut": "A", 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Section D, Biological crystallography", "date": "2010-06", "authors": "Li Lenong, Cheng Ninghui, Hirschi Kendal D, Wang Xiaoqiang", "reference": { "type": "PubMed", "id": "20516625", "url": "https://pubmed.ncbi.nlm.nih.gov/20516625" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84Y95-1", "protein_name": "Monothiol glutaredoxin-S14, chloroplastic", "gene_name": "GRXS14", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84Y95", "url": "https://www.uniprot.org/uniprotkb/Q84Y95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20516625", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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Multiple discrete photoreceptor responses contribute to induction of type II NAD(P)H dehydrogenase genes.", "journal": "Plant Physiol.", "date": "2004", "authors": "Escobar Matthew A, Franklin Keara A, Svensson A Staffan, Salter Michael G, Whitelam Garry C, Rasmusson Allan G", "reference": { "type": "PubMed", "id": "15333756", "url": "https://pubmed.ncbi.nlm.nih.gov/15333756" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GWA1-1", "protein_name": "Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial", "gene_name": "NDA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXR9-1", "protein_name": "Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial", "gene_name": "NDC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWA1", "url": "https://www.uniprot.org/uniprotkb/Q8GWA1" } ], "common_name": 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Lipid Res.", "date": "2006", "authors": "Beigneux AP, Vergnes L, Qiao X, Quatela S, Davis R, Watkins SM, Coleman RA, Walzem RL, Philips M, Reue K, Young SG", "reference": { "type": "PubMed", "id": "16449762", "url": "https://pubmed.ncbi.nlm.nih.gov/16449762" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GWG0-1", "protein_name": "Glycerol-3-phosphate acyltransferase 9", "gene_name": "GPAT9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8K2C8-1", "protein_name": "Glycerol-3-phosphate acyltransferase 4", "gene_name": "Gpat4", "tax_name": "Mouse" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWG0", "url": "https://www.uniprot.org/uniprotkb/Q8GWG0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16449762", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Biol. Chem.", "date": "2008", "authors": "Pav\u00f3n Lorena Ruiz, Lundh Fredrik, Lundin Bj\u00f6rn, Mishra Arti, Persson Bengt L, Spetea Cornelia", "reference": { "type": "PubMed", "id": "18353780", "url": "https://pubmed.ncbi.nlm.nih.gov/18353780" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GX78-1", "protein_name": "Ascorbate transporter, chloroplastic", "gene_name": "4; PHT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82390-1", "protein_name": "Sodium-dependent phosphate transport protein 1, chloroplastic", "gene_name": "ANTR1; PHT4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX78", "url": "https://www.uniprot.org/uniprotkb/Q8GX78" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18353780", "abstract": "", "glycosylation": [], 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Shinozaki Kazuo, Moriyama Yoshinori", "reference": { "type": "PubMed", "id": "25557369", "url": "https://pubmed.ncbi.nlm.nih.gov/25557369" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GX78-1", "protein_name": "Ascorbate transporter, chloroplastic", "gene_name": "4; PHT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82390-1", "protein_name": "Sodium-dependent phosphate transport protein 1, chloroplastic", "gene_name": "ANTR1; PHT4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX78", "url": "https://www.uniprot.org/uniprotkb/Q8GX78" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25557369", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"date": "2008-01", "authors": "Schramm Franziska, Larkindale Jane, Kiehlmann Elke, Ganguli Arnab, Englich Gisela, Vierling Elizabeth, von Koskull-D\u00f6ring Pascal", "reference": { "type": "PubMed", "id": "17999647", "url": "https://pubmed.ncbi.nlm.nih.gov/17999647" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GYY1-1", "protein_name": "Heat stress transcription factor A-3", "gene_name": "HSFA3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYY1", "url": "https://www.uniprot.org/uniprotkb/Q8GYY1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17999647", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Biol.", "date": "2007", "authors": "Balsera M\u00f3nica, Stengel Anna, Soll J\u00fcrgen, B\u00f6lter Bettina", "reference": { "type": "PubMed", "id": "17374152", "url": "https://pubmed.ncbi.nlm.nih.gov/17374152" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H0U5-1", "protein_name": "Protein TIC 62, chloroplastic", "gene_name": "TIC62", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0U5", "url": "https://www.uniprot.org/uniprotkb/Q8H0U5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17374152", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise.", "journal": "Plant Cell", "date": "2009", "authors": "Benz J P, Stengel A, Lintala M, Lee Y-H, Weber A, Philippar K, G\u00fcgel I L, Kaieda S, Ikegami T, Mulo P, Soll J, B\u00f6lter B", "reference": { "type": "PubMed", "id": "20040542", "url": "https://pubmed.ncbi.nlm.nih.gov/20040542" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H0U5-1", "protein_name": "Protein TIC 62, chloroplastic", "gene_name": "TIC62", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKW6-1", "protein_name": "Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic", "gene_name": "FNR1; 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Biophys. Acta", "date": "2011", "authors": "Mulo Paula", "reference": { "type": "PubMed", "id": "20934402", "url": "https://pubmed.ncbi.nlm.nih.gov/20934402" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H0U5-1", "protein_name": "Protein TIC 62, chloroplastic", "gene_name": "TIC62", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKW6-1", "protein_name": "Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic", "gene_name": "FNR1; LFNR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W493-1", "protein_name": "Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic", "gene_name": "LFNR2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0U5", "url": "https://www.uniprot.org/uniprotkb/Q8H0U5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20934402", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LIGHT-INDUCED RICE1 regulates light-dependent attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the thylakoid membrane in rice and Arabidopsis.", "journal": "Plant Cell", "date": "2016", "authors": "Yang Chao, Hu Hongtao, Ren Hongyan, Kong Yuzhu, Lin Hongwei, Guo Jiangfan, Wang Lingling, He Yi, Ding Xiaomeng, Grabsztunowicz Magda, Mulo Paula, Chen Tao, Liu Yu, Wu Zhongchang, Wu Yunrong, Mao Chuanzao, Wu Ping, Mo Xiaorong", "reference": { "type": "PubMed", "id": "26941088", "url": "https://pubmed.ncbi.nlm.nih.gov/26941088" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H0U5-1", "protein_name": "Protein TIC 62, chloroplastic", "gene_name": "TIC62", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKW6-1", "protein_name": "Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic", "gene_name": "FNR1; 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increased accumulation of H(2)O(2), abscisic acid (ABA) and constitutive expression of GSTF6/GST1 and PDF1.2A defense genes. Enhanced resistance to the necrotrophic pathogens Botrytis cinerea and Plectosphaerella cucumerina in a jasmonic acid-dependent manner, due, at least, to ABA-dependent intensified callose deposition. Higher drought resistance in an ABA-dependent manner associated with better stomatal closure. Increased sensitivity to plant growth inhibition by ABA. 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