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Rishikesh P", "reference": { "type": "PubMed", "id": "23832588", "url": "https://pubmed.ncbi.nlm.nih.gov/23832588" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LEK2-1", "protein_name": "Golgi apparatus membrane protein-like protein ECHIDNA", "gene_name": "ECH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWZ7-1", "protein_name": "V-type proton ATPase subunit a1", "gene_name": "VHA-a1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q946Y7-1", "protein_name": "Syntaxin-61", "gene_name": "SYP61", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VH1-1", "protein_name": "Protein YIP4b", "gene_name": "YIP4B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64614-1", "protein_name": "Protein YIP4a", "gene_name": "YIP4A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LEK2", "url": 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Biol.", "date": "2002", "authors": "Seifert Georg J, Barber Christine, Wells Brian, Dolan Liam, Roberts Keith", "reference": { "type": "PubMed", "id": "12419184", "url": "https://pubmed.ncbi.nlm.nih.gov/12419184" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LDN8-1", "protein_name": "Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3", "gene_name": "UGE3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C7W7-1", "protein_name": "UDP-glucose 4-epimerase 4", "gene_name": "UGE4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42605-1", "protein_name": "Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1", "gene_name": "UGE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SN58-1", "protein_name": "UDP-glucose 4-epimerase 5", "gene_name": "UGE5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0A7-1", "protein_name": "UDP-glucose 4-epimerase 2", "gene_name": "UGE2", 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"authors": "Kotake Toshihisa, Takata Ryohei, Verma Rajeev, Takaba Masato, Yamaguchi Daisuke, Orita Takahiro, Kaneko Satoshi, Matsuoka Koji, Koyama Tetsuo, Reiter Wolf-Dieter, Tsumuraya Yoichi", "reference": { "type": "PubMed", "id": "19754426", "url": "https://pubmed.ncbi.nlm.nih.gov/19754426" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LDN8-1", "protein_name": "Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3", "gene_name": "UGE3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C7W7-1", "protein_name": "UDP-glucose 4-epimerase 4", "gene_name": "UGE4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42605-1", "protein_name": "Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1", "gene_name": "UGE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SN58-1", "protein_name": "UDP-glucose 4-epimerase 5", "gene_name": "UGE5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0A7-1", "protein_name": "UDP-glucose 4-epimerase 2", "gene_name": "UGE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LDN8", "url": "https://www.uniprot.org/uniprotkb/Q8LDN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19754426", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Plant-specific protein MCD1 determines the site of chloroplast division in concert with bacteria-derived MinD.", "journal": "Curr. Biol.", "date": "2009", "authors": "Nakanishi Hiromitsu, Suzuki Kenji, Kabeya Yukihiro, Miyagishima Shin-ya", "reference": { "type": "PubMed", "id": "19135368", "url": "https://pubmed.ncbi.nlm.nih.gov/19135368" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GWA7-1", "protein_name": "Protein MULTIPLE CHLOROPLAST DIVISION SITE 1", "gene_name": "MCD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MBA2-1", "protein_name": "Septum site-determining protein minD homolog, chloroplastic", "gene_name": "MIND1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWA7", "url": "https://www.uniprot.org/uniprotkb/Q8GWA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19135368", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The chloroplast min system functions differentially in two specific nongreen plastids in Arabidopsis thaliana.", "journal": "PloS one", "date": "2013", "authors": "Wang Peng, Zhang Jie, Su Jianbin, Wang Peng, Liu Jun, Liu Bing, Feng Dongru, Wang Jinfa, Wang Hongbin", "reference": { "type": "PubMed", "id": "23936263", 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"taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWA7", "url": "https://www.uniprot.org/uniprotkb/Q8GWA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23936263", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MCD1 Associates with FtsZ Filaments via the Membrane-Tethering Protein ARC6 to Guide Chloroplast Division.", "journal": "The Plant cell", "date": "2018-08", "authors": "Chen Li, Sun Bing, Gao Wei, Zhang Qi-Yang, Yuan Huan, Zhang Min", "reference": { "type": "PubMed", "id": "29967285", "url": "https://pubmed.ncbi.nlm.nih.gov/29967285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GWA7-1", "protein_name": "Protein MULTIPLE CHLOROPLAST DIVISION SITE 1", "gene_name": "MCD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82533-1", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "gene_name": "FTSZ2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MBA2-1", "protein_name": "Septum site-determining protein minD homolog, chloroplastic", "gene_name": "MIND1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIG9-1", "protein_name": "Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic", "gene_name": "ARC6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42545-1", "protein_name": "Cell division protein FtsZ homolog 1, chloroplastic", "gene_name": "FTSZ1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6F6B5-1", "protein_name": "Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, chloroplastic", "gene_name": "ARC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C4Z7-1", "protein_name": "Cell division topological specificity factor homolog, chloroplastic", "gene_name": "MINE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWA7", "url": "https://www.uniprot.org/uniprotkb/Q8GWA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.29967285", "abstract": "", 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"glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of two Arabidopsis thaliana acyltransferases with preference for lysophosphatidylethanolamine.", "journal": "BMC plant biology", "date": "2009-05-16", "authors": "St\u00e5lberg Kjell, St\u00e5hl Ulf, Stymne Sten, Ohlrogge John", 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Acyltransferase Activity Regulates Growth of Arabidopsis.", "journal": "Plant physiology", "date": "2017-06", "authors": "Jasieniecka-Gazarkiewicz Katarzyna, Lager Ida, Carlsson Anders S, Gutbrod Katharina, Peisker Helga, D\u00f6rmann Peter, Stymne Sten, Bana\u015b Antoni", "reference": { "type": "PubMed", "id": "28408542", "url": "https://pubmed.ncbi.nlm.nih.gov/28408542" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7R3-1", "protein_name": "Lysophospholipid acyltransferase LPEAT1", "gene_name": "LPEAT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8S2-1", "protein_name": "Lysophospholipid acyltransferase LPEAT2", "gene_name": "LPEAT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L7R3", "url": "https://www.uniprot.org/uniprotkb/Q8L7R3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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Mol. Life Sci.", "date": "2003", "authors": "Barroco RM, De Veylder L, Magyar Z, Engler G, Inze D, Mironov V", "reference": { "type": "PubMed", "id": "12678503", "url": "https://pubmed.ncbi.nlm.nih.gov/12678503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LBC0-1", "protein_name": "Cyclin-T1-3", "gene_name": "CYCT1-3; CYCT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4P1-1", "protein_name": "Cyclin-dependent kinase C-2", "gene_name": "CDKC-2; CDKC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFT8-1", "protein_name": "Cyclin-dependent kinase C-1", "gene_name": "CDKC-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LBC0", "url": "https://www.uniprot.org/uniprotkb/Q8LBC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BR signal influences Arabidopsis ovule and seed number through regulating related genes expression by BZR1.", "journal": "Molecular plant", "date": "2013-03", "authors": "Huang Hui-Ya, Jiang Wen-Bo, Hu Yu-Wei, Wu Ping, Zhu Jia-Ying, 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Virol.", "date": "2011", "authors": "Eiras Marcelo, Nohales Mar\u00eda Angeles, Kitajima Elliot W, Flores Ricardo, Dar\u00f2s Jos\u00e9 Antonio", "reference": { "type": "PubMed", "id": "21153748", "url": "https://pubmed.ncbi.nlm.nih.gov/21153748" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84MZ4-1", "protein_name": "Transcription factor IIIA", "gene_name": "TFIIIA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MZ4", "url": "https://www.uniprot.org/uniprotkb/Q84MZ4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21153748", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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[] } ] }, { "title": "Identification and characterization of the terminal enzyme of siroheme biosynthesis from Arabidopsis thaliana: a plastid-located sirohydrochlorin ferrochelatase containing a 2FE-2S center.", "journal": "The Journal of biological chemistry", "date": "2005-02-11", "authors": "Raux-Deery Evelyne, Leech Helen K, Nakrieko Kerry-Ann, McLean Kirsty J, Munro Andrew W, Heathcote Peter, Rigby Stephen E J, Smith Alison G, Warren Martin J", "reference": { "type": "PubMed", "id": "15545265", "url": "https://pubmed.ncbi.nlm.nih.gov/15545265" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JH7-1", "protein_name": "Sirohydrochlorin ferrochelatase, chloroplastic", "gene_name": "SIRB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JH7", "url": "https://www.uniprot.org/uniprotkb/Q84JH7" } ], "common_name": "Mouse-ear cress", "glygen_name": 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[] } ] }, { "title": "AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis.", "journal": "Cell", "date": "2002", "authors": "Friml Jir\u00ed, Benkov\u00e1 Eva, Blilou Ikram, Wisniewska Justyna, Hamann Thorsten, Ljung Karin, Woody Scott, Sandberg Goran, Scheres Ben, J\u00fcrgens Gerd, Palme Klaus", "reference": { "type": "PubMed", "id": "11893337", "url": "https://pubmed.ncbi.nlm.nih.gov/11893337" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWZ6-1", "protein_name": "Auxin efflux carrier component 4", "gene_name": "PIN4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWZ6", "url": "https://www.uniprot.org/uniprotkb/Q8RWZ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11893337", "abstract": "", "glycosylation": [], 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"tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M98", "url": "https://www.uniprot.org/uniprotkb/Q84M98" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 470, "end_pos": 471, "sequence_org": "DD", "sequence_mut": "AA", "comment": "Able to form heterodimer with EME1A or EME1B but without any endonucleolytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q5W9E7", "url": "https://www.uniprot.org/uniprotkb/Q5W9E7" }, { "database": "PubMed", "id": "19339504", "url": "https://pubmed.ncbi.nlm.nih.gov/19339504" } ], "uniprot_canonical_ac": "Q5W9E7-1" } ], "record_id": "pubmed.19339504", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Control of cell proliferation in Arabidopsis thaliana by microRNA miR396.", "journal": "Development", "date": "2010", "authors": "Rodriguez Ramiro E, Mecchia Martin A, Debernardi Juan M, Schommer Carla, Weigel Detlef, Palatnik Javier F", "reference": { "type": "PubMed", "id": "20023165", "url": "https://pubmed.ncbi.nlm.nih.gov/20023165" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S9M3-1", "protein_name": "Growth-regulating factor 9", "gene_name": "GRF9", "tax_name": "Mouse-ear cress" }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis.", "journal": "Journal of experimental botany", "date": "2011-01", "authors": "Wang Li, Gu Xiaolu, Xu Deyang, Wang Wei, Wang Hua, Zeng Minhuan, Chang Zhaoyang, Huang Hai, Cui Xiaofeng", "reference": { "type": "PubMed", "id": "21036927", "url": "https://pubmed.ncbi.nlm.nih.gov/21036927" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S9M3-1", "protein_name": "Growth-regulating factor 9", "gene_name": "GRF9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L8A8-1", "protein_name": "Growth-regulating factor 2", "gene_name": "GRF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L8A5-1", "protein_name": "GRF1-interacting factor 1", "gene_name": "AN3; GIF1", "tax_name": "Mouse-ear cress" } ], "species": [ { 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Lipid Res.", "date": "2005", "authors": "Lee Hyoung Yool, Bahn Sung Chul, Shin Jeong Sheop, Hwang Inhwan, Back Kyoungwhan, Doelling Jed H, Ryu Stephen Beungtae", "reference": { "type": "PubMed", "id": "15748654", "url": "https://pubmed.ncbi.nlm.nih.gov/15748654" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S8N6-1", "protein_name": "Phospholipase A2-alpha", "gene_name": "PLA2-ALPHA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GZB4-1", "protein_name": "Phospholipase A2-beta", "gene_name": "PLA2-BETA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GV50-1", "protein_name": "Phospholipase A2-delta", "gene_name": "PLA2-DELTA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0D7-1", "protein_name": "Phospholipase A2-gamma", "gene_name": "PLA2-GAMMA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S8N6", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-05-23", "authors": "Dong Chun-Hai, Agarwal Manu, Zhang Yiyue, Xie Qi, Zhu Jian-Kang", "reference": { "type": "PubMed", "id": "16702557", "url": "https://pubmed.ncbi.nlm.nih.gov/16702557" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JU6-1", "protein_name": "E3 ubiquitin-protein ligase HOS1", "gene_name": "HOS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSE2-1", "protein_name": "Transcription factor ICE1", "gene_name": "ICE1; SCRM", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JU6", "url": "https://www.uniprot.org/uniprotkb/Q84JU6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 75, "end_pos": 75, "sequence_org": "H", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.", "journal": "Plant & cell physiology", "date": "2000-09", "authors": "Matsushika A, Makino S, Kojima M, Mizuno T", "reference": { "type": "PubMed", "id": "11100772", "url": 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"id": "Q8L500", "url": "https://www.uniprot.org/uniprotkb/Q8L500" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11100772", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo-response regulator proteins.", "journal": "The Journal of biological chemistry", "date": "2008-08-22", "authors": "Fujiwara Sumire, Wang Lei, Han Linqu, Suh Sung-Suk, Salom\u00e9 Patrice A, McClung C Robertson, Somers David E", "reference": { "type": "PubMed", "id": "18562312", "url": "https://pubmed.ncbi.nlm.nih.gov/18562312" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L500-1", "protein_name": "Two-component response regulator-like APRR9", "gene_name": "APRR9; PRR9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WK5-1", "protein_name": "Two-component response regulator-like APRR7", "gene_name": "APRR7; PRR7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BT6-1", "protein_name": "Adagio protein 1", "gene_name": "ADO1; ZTL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6LA42-1", "protein_name": 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"protein_name": "Two-component response regulator-like APRR9", "gene_name": "APRR9; PRR9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WK5-1", "protein_name": "Two-component response regulator-like APRR7", "gene_name": "APRR7; PRR7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92973-1", "protein_name": "Protein CCA1", "gene_name": "CCA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6LA42-1", "protein_name": "Two-component response regulator-like APRR5", "gene_name": "APRR5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R0H1-1", "protein_name": "Protein LHY", "gene_name": "LHY", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L500", "url": "https://www.uniprot.org/uniprotkb/Q8L500" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Hernando C Esteban, Cuevas Juan C, Godoy Herz Micaela A, Depetris-Chauvin Ana, Simpson Craig G, Brown John W S, Cerd\u00e1n Pablo D, Borevitz Justin O, Mas Paloma, Ceriani M Fernanda, Kornblihtt Alberto R, Yanovsky Marcelo J", "reference": { "type": "PubMed", "id": "20962777", "url": "https://pubmed.ncbi.nlm.nih.gov/20962777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L500-1", "protein_name": "Two-component response regulator-like APRR9", "gene_name": "APRR9; PRR9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWT4-1", "protein_name": "Protein arginine N-methyltransferase 1.5", "gene_name": "PMRT15", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L500", "url": "https://www.uniprot.org/uniprotkb/Q8L500" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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McClung C Robertson", "reference": { "type": "PubMed", "id": "21098730", "url": "https://pubmed.ncbi.nlm.nih.gov/21098730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L500-1", "protein_name": "Two-component response regulator-like APRR9", "gene_name": "APRR9; PRR9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WK5-1", "protein_name": "Two-component response regulator-like APRR7", "gene_name": "APRR7; PRR7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L500", "url": "https://www.uniprot.org/uniprotkb/Q8L500" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21098730", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"date": "2012-10-16", "authors": "Nakamichi Norihito, Kiba Takatoshi, Kamioka Mari, Suzuki Takamasa, Yamashino Takafumi, Higashiyama Tetsuya, Sakakibara Hitoshi, Mizuno Takeshi", "reference": { "type": "PubMed", "id": "23027938", "url": "https://pubmed.ncbi.nlm.nih.gov/23027938" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L500-1", "protein_name": "Two-component response regulator-like APRR9", "gene_name": "APRR9; PRR9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WK5-1", "protein_name": "Two-component response regulator-like APRR7", "gene_name": "APRR7; PRR7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6LA42-1", "protein_name": "Two-component response regulator-like APRR5", "gene_name": "APRR5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L500", "url": "https://www.uniprot.org/uniprotkb/Q8L500" } ], 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Arabidopsis deetiolation.", "journal": "Plant Cell", "date": "2013", "authors": "Karayekov Elizabeth, Sellaro Romina, Legris Martina, Yanovsky Marcelo J, Casal Jorge J", "reference": { "type": "PubMed", "id": "23933882", "url": "https://pubmed.ncbi.nlm.nih.gov/23933882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L500-1", "protein_name": "Two-component response regulator-like APRR9", "gene_name": "APRR9; PRR9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WK5-1", "protein_name": "Two-component response regulator-like APRR7", "gene_name": "APRR7; PRR7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L500", "url": "https://www.uniprot.org/uniprotkb/Q8L500" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23933882", "abstract": "", 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