[ { "title": "Human PRP4 kinase is required for stable tri-snRNP association during spliceosomal B complex formation.", "journal": "Nature structural & molecular biology", "date": "2010-02", "authors": "Schneider Marc, Hsiao He-Hsuan, Will Cindy L, Giet R\u00e9gis, Urlaub Henning, L\u00fchrmann Reinhard", "reference": { "type": "PubMed", "id": "20118938", "url": "https://pubmed.ncbi.nlm.nih.gov/20118938" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WWY3", "url": "https://www.uniprot.org/uniprotkb/Q8WWY3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20118938", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CTNNBL1 is a novel nuclear localization sequence-binding protein that recognizes RNA-splicing factors CDC5L and Prp31.", "journal": "J. Biol. Chem.", "date": "2011", "authors": "Ganesh K, Adam S, Taylor B, Simpson P, Rada C, Neuberger M", "reference": { "type": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52294-1", "protein_name": "Importin subunit alpha-5", "gene_name": "KPNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX7-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "AICDA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9CWL8-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "Ctnnbl1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WWY3", "url": "https://www.uniprot.org/uniprotkb/Q8WWY3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 10, "end_pos": 10, "sequence_org": "K", "sequence_mut": "A", "comment": "Little effect on nuclear import; when associated with A-193. No effect on CTNNBL1 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZX7", "url": "https://www.uniprot.org/uniprotkb/Q9GZX7" }, { "database": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" } ], "uniprot_canonical_ac": "Q9GZX7-1" }, { "start_pos": 112, "end_pos": 112, "sequence_org": "R", "sequence_mut": "D", "comment": "Greatly reduced nuclear import; when associated with A-193.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZX7", "url": "https://www.uniprot.org/uniprotkb/Q9GZX7" }, { "database": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" } ], "uniprot_canonical_ac": "Q9GZX7-1" }, { "start_pos": 18, "end_pos": 18, "sequence_org": "V", "sequence_mut": "S", "comment": "Greatly impaired nuclear import; when associated with V-19 and A-193. Reduced interaction with both CTNNBL1 and KPNA1, and abolishes immunoglobulin class switching; when associated with V-19.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZX7", "url": "https://www.uniprot.org/uniprotkb/Q9GZX7" }, { "database": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" } ], "uniprot_canonical_ac": "Q9GZX7-1" }, { "start_pos": 193, "end_pos": 193, "sequence_org": "F", "sequence_mut": "A", "comment": "Completely abolishes nuclear import; when associated with W-24 or D-112. Little affect on nuclear import; when associated with A-10. Greatly impaired nuclear import; when associated with K-20 or G-50. Almost completely abolishes nuclear import; when associated with S-18 and V-19.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZX7", "url": "https://www.uniprot.org/uniprotkb/Q9GZX7" }, { "database": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" } ], "uniprot_canonical_ac": "Q9GZX7-1" }, { "start_pos": 19, "end_pos": 19, "sequence_org": "R", "sequence_mut": "V", "comment": "Greatly impaired nuclear import; when associated with S-18 and A-193. Reduced interaction with both CTNNBL1 and KPNA1, and abolishes immunoglobulin class switching; when associated with S-18.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZX7", "url": "https://www.uniprot.org/uniprotkb/Q9GZX7" }, { "database": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" } ], "uniprot_canonical_ac": "Q9GZX7-1" }, { "start_pos": 20, "end_pos": 20, "sequence_org": "W", "sequence_mut": "K", "comment": "Impaired nuclear import; when associated with A-193. No effect on CTNNBL1 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZX7", "url": "https://www.uniprot.org/uniprotkb/Q9GZX7" }, { "database": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" } ], "uniprot_canonical_ac": "Q9GZX7-1" }, { "start_pos": 50, "end_pos": 50, "sequence_org": "R", "sequence_mut": "G", "comment": "Some reduced nuclear import; when associated with A-193.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZX7", "url": "https://www.uniprot.org/uniprotkb/Q9GZX7" }, { "database": "PubMed", "id": "21385873", "url": "https://pubmed.ncbi.nlm.nih.gov/21385873" } ], "uniprot_canonical_ac": "Q9GZX7-1" } ], "record_id": "pubmed.21385873", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31.", "journal": "RNA", "date": "2011", "authors": "Liu S, Ghalei H, Luhrmann R, Wahl MC", "reference": { "type": "PubMed", "id": "21784869", "url": "https://pubmed.ncbi.nlm.nih.gov/21784869" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WWY3", "url": "https://www.uniprot.org/uniprotkb/Q8WWY3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21784869", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of O-GlcNAc cycling and proteomic identification of differentially O-GlcNAcylated proteins during G1/S transition.", "journal": "Biochimica et biophysica acta", "date": "2012", "authors": "Drougat L, Olivier-Van Stichelen S, Mortuaire M, Foulquier F, Lacoste AS, Michalski JC, Lefebvre T, Vercoutter-Edouart AS", "reference": { "type": "PubMed", "id": "22967762", "url": "https://pubmed.ncbi.nlm.nih.gov/22967762" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43707-1", "protein_name": "Alpha-actinin-4", "gene_name": "ACTN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14566-1", "protein_name": "DNA replication licensing factor MCM6", "gene_name": "MCM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12956-1", "protein_name": "DNA repair protein Ku70", "gene_name": "XRCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31146-1", "protein_name": "Coronin-1A", "gene_name": "CORO1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08779-1", "protein_name": "Keratin, type I cytoskeletal 16", "gene_name": "KRT16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13647-1", "protein_name": "Keratin, type II cytoskeletal 5", "gene_name": "KRT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60684-1", "protein_name": "Importin subunit alpha-7", "gene_name": "KPNA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20700-1", "protein_name": "Lamin-B1", "gene_name": "LMNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92841-4", "protein_name": "Probable ATP-dependent RNA helicase DDX17", "gene_name": "DDX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38646-1", "protein_name": "Stress-70 protein, mitochondrial", "gene_name": "HSPA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55084-1", "protein_name": "Trifunctional enzyme subunit beta, mitochondrial", "gene_name": "HADHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H993-1", "protein_name": "Damage-control phosphatase 1", "gene_name": "DCPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33993-1", "protein_name": "DNA replication licensing factor MCM7", "gene_name": "MCM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13263-1", "protein_name": "Transcription intermediary factor 1-beta", "gene_name": "TRIM28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04695-1", "protein_name": "Keratin, type I cytoskeletal 17", "gene_name": "KRT17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02533-1", "protein_name": "Keratin, type I cytoskeletal 14", "gene_name": "KRT14", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular architecture of the human U4/U6.U5 tri-snRNP.", "journal": "Science", "date": "2016", "authors": "Agafonov DE, Kastner B, Dybkov O, Hofele RV, Liu WT, Urlaub H, Luhrmann R, Stark H", "reference": { "type": "PubMed", "id": "26912367", "url": "https://pubmed.ncbi.nlm.nih.gov/26912367" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WWY3", "url": "https://www.uniprot.org/uniprotkb/Q8WWY3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26912367", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Precision Therapy Approach for Retinitis Pigmentosa 11 Using Splice-Switching Antisense Oligonucleotides to Restore the Open Reading Frame of PRPF31.", "journal": "International journal of molecular sciences", "date": "2024-03-16", "authors": "Grainok Janya, Pitout Ianthe L, Chen Fred K, McLenachan Samuel, Heath Jeffery Rachael C, Mitrpant Chalermchai, Fletcher Sue", "reference": { "type": "PubMed", "id": "38542364", "url": "https://pubmed.ncbi.nlm.nih.gov/38542364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WWY3", "url": "https://www.uniprot.org/uniprotkb/Q8WWY3" } ], "common_name": 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence for a major retinitis pigmentosa locus on 19q13.4 (RP11) and association with a unique bimodal expressivity phenotype.", "journal": "American journal of human genetics", "date": "1996", "authors": "Al-Maghtheh M, Vithana E, Tarttelin E, Jay M, Evans K, Moore T, Bhattacharya S, Inglehearn CF", "reference": { "type": "PubMed", "id": "8808602", "url": "https://pubmed.ncbi.nlm.nih.gov/8808602" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WWY3", "url": "https://www.uniprot.org/uniprotkb/Q8WWY3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8808602", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of transforming growth factor-beta/SMAD signalling by the interferon-gamma/STAT pathway.", "journal": "Nature", "date": "1999", "authors": "Ulloa L, Doody J, Massague J", "reference": { "type": "PubMed", "id": "10067896", "url": "https://pubmed.ncbi.nlm.nih.gov/10067896" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": 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"Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10067896", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Observation of an unexpected third receptor molecule in the crystal structure of human interferon-gamma receptor complex.", "journal": "Structure (London, England : 1993)", "date": "2000", "authors": "Thiel DJ, le Du MH, Walter RL, D'Arcy A, Chene C, Fountoulakis M, Garotta G, Winkler FK, Ealick SE", "reference": { "type": "PubMed", "id": "10986460", "url": "https://pubmed.ncbi.nlm.nih.gov/10986460" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", 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antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10986460", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A road map for those who don't know JAK-STAT.", "journal": "Science (New York, N.Y.)", "date": "2002", "authors": "Aaronson DS, Horvath CM", "reference": { "type": "PubMed", "id": "12040185", "url": "https://pubmed.ncbi.nlm.nih.gov/12040185" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12040185", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Seeing the light: preassembly and ligand-induced changes of the interferon gamma receptor complex in cells.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Krause CD, Mei E, Xie J, Jia Y, Bopp MA, Hochstrasser RM, Pestka S", "reference": { "type": "PubMed", "id": "12438563", "url": "https://pubmed.ncbi.nlm.nih.gov/12438563" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", 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"uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": 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"uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12438563", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Y-box-binding protein YB-1 mediates transcriptional repression of human alpha 2(I) collagen gene expression by interferon-gamma.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Higashi K, Inagaki Y, Suzuki N, Mitsui S, Mauviel A, Kaneko H, Nakatsuka I", "reference": { "type": "PubMed", "id": "12446674", "url": "https://pubmed.ncbi.nlm.nih.gov/12446674" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17275-1", "protein_name": "Transcription factor JunB", "gene_name": "JUNB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42772-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor B", "gene_name": "CDKN2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15583-1", "protein_name": "Homeobox protein TGIF1", "gene_name": "TGIF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 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"uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", 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"gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84022-1", "protein_name": "SMAD family member 3", "gene_name": "SMAD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75909-3", "protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) 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"Human" }, { "uniprot_canonical_ac": "Q14188-1", "protein_name": "Transcription factor Dp-2", "gene_name": "TFDP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15329-1", "protein_name": "Transcription factor E2F5", "gene_name": "E2F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16254-1", "protein_name": "Transcription factor E2F4", "gene_name": "E2F4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28749-1", "protein_name": "Retinoblastoma-like protein 1", "gene_name": "RBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24863-1", "protein_name": "Cyclin-C", "gene_name": "CCNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49336-1", "protein_name": "Cyclin-dependent kinase 8", "gene_name": "CDK8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00255-2", "protein_name": "Menin", "gene_name": "MEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": 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"gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The ins and outs of STAT1 nuclear transport.", "journal": "Science's STKE : signal transduction knowledge environment", "date": "2003", "authors": "McBride KM, Reich NC", "reference": { "type": "PubMed", "id": "12915721", "url": "https://pubmed.ncbi.nlm.nih.gov/12915721" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14586410", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interferon-gamma inhibits transforming growth factor-beta production in human airway epithelial cells by targeting Smads.", "journal": "American journal of respiratory cell and molecular biology", "date": "2004", "authors": "Wen FQ, Liu X, Kobayashi T, Abe S, Fang Q, Kohyama T, Ertl R, Terasaki Y, Manouilova L, Rennard SI", "reference": { "type": "PubMed", "id": "14722222", "url": 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"uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14722222", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional induction of IFN-gamma-responsive genes is modulated by DNA surrounding the interferon stimulation response element.", "journal": "Nucleic acids research", "date": "1992", "authors": "Strehlow I, Decker T", "reference": { "type": "PubMed", "id": "1508672", "url": "https://pubmed.ncbi.nlm.nih.gov/1508672" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon 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TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1508672", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein kinase Cdelta regulates apoptosis via activation of STAT1.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "DeVries TA, Kalkofen RL, Matassa AA, Reyland ME", "reference": { "type": "PubMed", "id": "15322115", "url": "https://pubmed.ncbi.nlm.nih.gov/15322115" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase 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the chains of the IFN-gamma receptor complex: the roles of Jak kinases, Stat1 and the receptor chains.", "journal": "Cell research", "date": "2006", "authors": "Krause CD, Lavnikova N, Xie J, Mei E, Mirochnitchenko OV, Jia Y, Hochstrasser RM, Pestka S", "reference": { "type": "PubMed", "id": "16467876", "url": "https://pubmed.ncbi.nlm.nih.gov/16467876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16467876", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17125875", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Induction of guanylate binding protein 5 by gamma interferon increases susceptibility to Salmonella enterica serovar Typhimurium-induced pyroptosis in RAW 264.7 cells.", "journal": "Infection and immunity", "date": "2008", "authors": "Rupper AC, Cardelli JA", "reference": { "type": 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"protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", 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"uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": 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"uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18362138", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine phosphorylation regulates the partitioning of STAT1 between different dimer conformations.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2008", "authors": "Wenta N, Strauss H, Meyer S, Vinkemeier U", "reference": { "type": "PubMed", "id": "18591661", "url": "https://pubmed.ncbi.nlm.nih.gov/18591661" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42229-1", "protein_name": "Signal transducer and activator of transcription 5A", "gene_name": "STAT5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51692-1", "protein_name": "Signal transducer and activator of transcription 5B", "gene_name": "STAT5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15248-1", "protein_name": "Interleukin-9", "gene_name": "IL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31785-1", "protein_name": "Cytokine receptor common subunit gamma", "gene_name": "IL2RG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01113-1", "protein_name": "Interleukin-9 receptor", "gene_name": "IL9R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52333-1", "protein_name": "Tyrosine-protein kinase JAK3", "gene_name": "JAK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18591661", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20049711", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Preclinical characterization of the selective JAK1/2 inhibitor INCB018424: therapeutic implications for the treatment of myeloproliferative neoplasms.", "journal": "Blood", "date": "2010", "authors": "Quintas-Cardama A, Vaddi K, Liu P, Manshouri T, Li J, Scherle PA, Caulder E, Wen X, Li Y, Waeltz P, Rupar M, Burn T, Lo Y, Kelley J, Covington M, Shepard S, Rodgers JD, Haley P, Kantarjian H, Fridman JS, Verstovsek S", "reference": { "type": "PubMed", "id": "20130243", "url": "https://pubmed.ncbi.nlm.nih.gov/20130243" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52294-1", "protein_name": "Importin subunit alpha-5", "gene_name": "KPNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05014-1", "protein_name": "Interferon alpha-4", "gene_name": "IFNA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06124-2", "protein_name": "Tyrosine-protein phosphatase non-receptor type 11", "gene_name": "PTPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", 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ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DY56-1", "protein_name": "Interferon alpha-1", "gene_name": "IFNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10589-1", "protein_name": "Bone marrow stromal antigen 2", "gene_name": "BST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55265-1", "protein_name": "Double-stranded RNA-specific adenosine deaminase", "gene_name": "ADAR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13164-1", "protein_name": "Interferon-induced transmembrane protein 1", "gene_name": "IFITM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40305-2", "protein_name": "Interferon alpha-inducible protein 27, mitochondrial", "gene_name": "IFI27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01629-1", "protein_name": "Interferon-induced transmembrane protein 2", "gene_name": "IFITM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01566-1", "protein_name": "Interferon alpha-10", "gene_name": 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"uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19525-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "EIF2AK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42224-1", "protein_name": "Signal transducer and activator of transcription 1-alpha/beta", "gene_name": "STAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80217-1", "protein_name": "Interferon-induced 35 kDa protein", "gene_name": "IFI35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01628-1", "protein_name": "Interferon-induced transmembrane protein 3", "gene_name": "IFITM3", "tax_name": 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"uniprot_canonical_ac": "Q9Y3Z3-1", "protein_name": "Deoxynucleoside triphosphate triphosphohydrolase SAMHD1", "gene_name": "SAMHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05161-1", "protein_name": "Ubiquitin-like protein ISG15", "gene_name": "ISG15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14974-1", "protein_name": "Importin subunit beta-1", "gene_name": "KPNB1", "tax_name": "Human" }, { 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"protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20130243", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 140 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"protein_name": "Interferon alpha-inducible protein 27, mitochondrial", "gene_name": "IFI27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01629-1", "protein_name": "Interferon-induced transmembrane protein 2", "gene_name": "IFITM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01566-1", "protein_name": "Interferon alpha-10", "gene_name": "IFNA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01571-1", "protein_name": "Interferon alpha-17", "gene_name": "IFNA17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01574-1", "protein_name": "Interferon beta", "gene_name": "IFNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05015-1", "protein_name": "Interferon alpha-16", "gene_name": "IFNA16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28062-1", "protein_name": "Proteasome subunit beta 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discovery of potent and selective pyrazolopyrimidine janus kinase 2 inhibitors.", "journal": "Journal of medicinal chemistry", "date": "2012", "authors": "Hanan EJ, van Abbema A, Barrett K, Blair WS, Blaney J, Chang C, Eigenbrot C, 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phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20591-1", "protein_name": "Interferon-induced GTP-binding protein Mx1", "gene_name": "MX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14879-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 3", "gene_name": "IFIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05823-1", "protein_name": "2-5A-dependent ribonuclease", "gene_name": "RNASEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6GPH4-1", "protein_name": "XIAP-associated factor 1", "gene_name": "XAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52630-3", "protein_name": "Signal transducer and activator of transcription 2", "gene_name": "STAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09912-1", "protein_name": "Interferon alpha-inducible protein 6", "gene_name": "IFI6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61221-1", "protein_name": "ATP-binding cassette sub-family E member 1", "gene_name": "ABCE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05014-1", "protein_name": "Interferon alpha-4", "gene_name": "IFNA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06124-2", "protein_name": "Tyrosine-protein phosphatase non-receptor type 11", "gene_name": "PTPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DY56-1", "protein_name": "Interferon alpha-1", "gene_name": "IFNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10589-1", "protein_name": "Bone marrow stromal antigen 2", "gene_name": "BST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55265-1", "protein_name": "Double-stranded RNA-specific adenosine deaminase", "gene_name": "ADAR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13164-1", "protein_name": "Interferon-induced transmembrane protein 1", "gene_name": "IFITM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40305-2", "protein_name": "Interferon alpha-inducible protein 27, mitochondrial", "gene_name": "IFI27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01629-1", "protein_name": "Interferon-induced transmembrane protein 2", "gene_name": "IFITM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01566-1", "protein_name": "Interferon alpha-10", "gene_name": "IFNA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01571-1", "protein_name": "Interferon alpha-17", "gene_name": "IFNA17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01574-1", "protein_name": "Interferon beta", "gene_name": "IFNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05015-1", "protein_name": "Interferon alpha-16", "gene_name": "IFNA16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28062-1", "protein_name": "Proteasome subunit beta type-8", "gene_name": "PSMB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13325-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 5", "gene_name": "IFIT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19525-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "EIF2AK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42224-1", "protein_name": "Signal transducer and activator of transcription 1-alpha/beta", "gene_name": "STAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80217-1", "protein_name": "Interferon-induced 35 kDa protein", "gene_name": "IFI35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01628-1", "protein_name": "Interferon-induced transmembrane protein 3", "gene_name": "IFITM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Z3-1", "protein_name": "Deoxynucleoside triphosphate triphosphohydrolase SAMHD1", "gene_name": "SAMHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05161-1", "protein_name": "Ubiquitin-like protein ISG15", "gene_name": "ISG15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14974-1", "protein_name": "Importin subunit beta-1", "gene_name": "KPNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17181-1", "protein_name": "Interferon alpha/beta receptor 1", "gene_name": "IFNAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23061660", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 140 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19525-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "EIF2AK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42224-1", "protein_name": "Signal transducer and activator of transcription 1-alpha/beta", "gene_name": "STAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80217-1", "protein_name": "Interferon-induced 35 kDa protein", "gene_name": "IFI35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01628-1", "protein_name": "Interferon-induced transmembrane protein 3", "gene_name": "IFITM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 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"uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05161-1", "protein_name": "Ubiquitin-like protein ISG15", "gene_name": "ISG15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14974-1", "protein_name": "Importin subunit beta-1", "gene_name": "KPNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17181-1", "protein_name": "Interferon alpha/beta receptor 1", "gene_name": "IFNAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25763818", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Autoubiquitination of TRIM26 links TBK1 to NEMO in RLR-mediated innate antiviral immune response.", "journal": "Journal of molecular cell biology", "date": "2016", "authors": "Ran Y, Zhang J, Liu LL, Pan ZY, Nie Y, Zhang HY, Wang YY", "reference": { "type": "PubMed", "id": "26611359", "url": "https://pubmed.ncbi.nlm.nih.gov/26611359" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHD2-1", "protein_name": "Serine/threonine-protein kinase TBK1", "gene_name": "TBK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26611359", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Mao DD, Hafez D, Yang W, Taiwo R, Paturu M, Salehi A, Gujar AD, Dunn GP, Mosammaparast N, Petti AA, Yano H, Kim AH", "reference": { "type": "PubMed", "id": "34732716", "url": "https://pubmed.ncbi.nlm.nih.gov/34732716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48431-1", "protein_name": "Transcription factor SOX-2", "gene_name": "SOX2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34732716", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7530745", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Jak kinases differentially associate with the alpha and beta (accessory factor) chains of the interferon gamma receptor to form a functional receptor unit capable of activating STAT transcription factors.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Sakatsume M, Igarashi K, Winestock KD, Garotta G, Larner AC, Finbloom DS", "reference": { "type": "PubMed", "id": "7615558", "url": "https://pubmed.ncbi.nlm.nih.gov/7615558" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 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"P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 457, "end_pos": 457, "kinase_uniprot_canonical_ac": "P23458-1", "kinase_gene_name": "JAK1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P15260", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15260" }, { "database": "PubMed", "id": "7615558", "url": "https://pubmed.ncbi.nlm.nih.gov/7615558" } ], "site_lbl": "Tyr457", "uniprot_canonical_ac": "P15260-1" } ], "record_id": "pubmed.7615558", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of a complex between interferon-gamma and its soluble high-affinity receptor.", "journal": "Nature", "date": "1995", "authors": "Walter MR, Windsor WT, Nagabhushan TL, Lundell DJ, Lunn CA, Zauodny PJ, Narula SK", "reference": { "type": "PubMed", "id": "7617032", "url": "https://pubmed.ncbi.nlm.nih.gov/7617032" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7617032", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation and activation of the DNA binding activity of purified Stat1 by the Janus protein-tyrosine kinases and the epidermal growth factor receptor.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Quelle FW, Thierfelder W, Witthuhn BA, Tang B, Cohen S, Ihle JN", "reference": { "type": "PubMed", "id": "7657660", "url": "https://pubmed.ncbi.nlm.nih.gov/7657660" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42224-1", "protein_name": "Signal transducer and activator of transcription 1-alpha/beta", "gene_name": "STAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { 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"title": "Interaction between the components of the interferon gamma receptor complex.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Kotenko SV, Izotova LS, Pollack BP, Mariano TM, Donnelly RJ, Muthukumaran G, Cook JR, Garotta G, Silvennoinen O, Ihle JN, et al.", "reference": { "type": "PubMed", "id": "7673114", "url": "https://pubmed.ncbi.nlm.nih.gov/7673114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", 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"protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7796299", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ligand-induced IFN gamma receptor tyrosine phosphorylation couples the receptor to its signal transduction system (p91).", "journal": "The EMBO journal", "date": "1994", "authors": "Greenlund AC, Farrar MA, Viviano BL, Schreiber RD", "reference": { "type": "PubMed", "id": "8156998", "url": "https://pubmed.ncbi.nlm.nih.gov/8156998" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42224-1", "protein_name": "Signal transducer and activator of transcription 1-alpha/beta", "gene_name": "STAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 457, "end_pos": 457, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P15260", "url": "https://www.uniprot.org/uniprotkb/P15260" }, { "database": "PubMed", "id": "8156998", "url": "https://pubmed.ncbi.nlm.nih.gov/8156998" }, { "database": "iPTMnet", "id": "P15260", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15260" }, { "database": "IntAct", "id": "P15260", "url": "https://www.ebi.ac.uk/intact/interactors/id:P15260*" }, { "database": "PubMed", "id": "15780933", "url": "https://pubmed.ncbi.nlm.nih.gov/15780933" }, { "database": "PubMed", "id": "8662591", "url": "https://pubmed.ncbi.nlm.nih.gov/8662591" }, { "database": "PRO", "id": "P15260", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P15260" } ], "site_lbl": "Tyr457", "uniprot_canonical_ac": "P15260-1" } ], "record_id": "pubmed.8156998", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 92 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IFN-gamma up-regulates platelet-activating factor receptor gene expression in human monocytes.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "1994", "authors": "Ouellet S, Muller E, Rola-Pleszczynski M", "reference": { "type": "PubMed", "id": "8176225", "url": "https://pubmed.ncbi.nlm.nih.gov/8176225" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": 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"Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": 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"P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8176225", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interferon gamma-induced transcription of the high-affinity Fc receptor for IgG requires assembly of a complex that includes the 91-kDa subunit of transcription factor ISGF3.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1993", "authors": "Pearse RN, Feinman R, Shuai K, Darnell JE Jr, Ravetch JV", "reference": { "type": "PubMed", "id": "8483949", "url": "https://pubmed.ncbi.nlm.nih.gov/8483949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15524-1", "protein_name": "Suppressor of cytokine signaling 1", "gene_name": "SOCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K5-1", "protein_name": "2'-5'-oligoadenylate synthase 3", "gene_name": "OAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02556-1", "protein_name": "Interferon regulatory factor 8", "gene_name": "IRF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38484-1", "protein_name": "Interferon gamma receptor 2", "gene_name": "IFNGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14896-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "IRF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05655-1", "protein_name": "Protein kinase C delta type", "gene_name": "PRKCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01579-1", "protein_name": "Interferon gamma", "gene_name": "IFNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15260-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "IFNGR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDY6-1", "protein_name": "Tripartite motif-containing protein 10", "gene_name": "TRIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75382-1", "protein_name": "Tripartite motif-containing protein 3", "gene_name": "TRIM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15344-1", "protein_name": "E3 ubiquitin-protein ligase Midline-1", "gene_name": "MID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14316-1", "protein_name": "Interferon regulatory factor 2", "gene_name": "IRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8483949", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional regulation of the human intercellular adhesion molecule-1 gene: a short overview.", "journal": "Immunobiology", "date": "1995", "authors": "Stratowa C, Audette M", "reference": { "type": "PubMed", "id": "8530158", "url": "https://pubmed.ncbi.nlm.nih.gov/8530158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": 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"Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 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"protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", 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"HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8631301", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cellular responses to interferon-gamma.", "journal": "Annual review of immunology", "date": "1997", "authors": "Boehm U, Klamp T, Groot M, Howard JC", "reference": { "type": "PubMed", "id": "9143706", "url": "https://pubmed.ncbi.nlm.nih.gov/9143706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12899-1", "protein_name": "Tripartite motif-containing protein 26", "gene_name": "TRIM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15646-1", "protein_name": "2'-5'-oligoadenylate synthase-like protein", "gene_name": "OASL", 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"CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13568-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "IRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02795-1", "protein_name": "Metallothionein-2", "gene_name": "MT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10914-1", "protein_name": "Interferon regulatory factor 1", "gene_name": "IRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20036-1", "protein_name": "HLA class II histocompatibility antigen, DP alpha 1 chain", "gene_name": "HLA-DPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92637-1", "protein_name": "Putative high affinity immunoglobulin gamma Fc receptor IB", "gene_name": "FCGR1BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP8-1", "protein_name": "Guanylate-binding protein 5", "gene_name": "GBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01920-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 1 chain", "gene_name": "HLA-DQB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01906-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 2 chain", "gene_name": "HLA-DQA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92985-1", "protein_name": "Interferon regulatory factor 7", "gene_name": "IRF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15105-1", "protein_name": "SMAD family member 7", "gene_name": "SMAD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01911-1", "protein_name": "HLA class II histocompatibility antigen, DRB1 beta chain", "gene_name": "HLA-DRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00973-1", "protein_name": "2'-5'-oligoadenylate synthase 1", "gene_name": "OAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C040-1", "protein_name": "Tripartite motif-containing protein 2", "gene_name": "TRIM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12314-1", "protein_name": "High affinity immunoglobulin gamma Fc receptor I", "gene_name": "FCGR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R5-1", "protein_name": "Guanylate-binding protein 3", "gene_name": "GBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00635-1", "protein_name": "E3 ubiquitin-protein ligase TRIM38", "gene_name": "TRIM38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8V2-1", "protein_name": "Guanylate-binding protein 7", "gene_name": "GBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AZZ1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM68", "gene_name": "TRIM68", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM48", "gene_name": "TRIM48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33076-1", "protein_name": "MHC class II transactivator", "gene_name": "CIITA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14134-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "TRIM29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN66-1", "protein_name": "Guanylate-binding protein 6", "gene_name": "GBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25105-1", "protein_name": "Platelet-activating factor receptor", "gene_name": "PTAFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14142-1", "protein_name": "Tripartite motif-containing protein 14", "gene_name": "TRIM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C030-1", "protein_name": "Tripartite motif-containing protein 6", "gene_name": "TRIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01909-1", "protein_name": "HLA class II histocompatibility antigen, DQ alpha 1 chain", "gene_name": "HLA-DQA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04440-1", "protein_name": "HLA class II histocompatibility antigen, DP beta 1 chain", "gene_name": "HLA-DPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05538-1", "protein_name": "HLA class II histocompatibility antigen, DQ beta 2 chain", "gene_name": "HLA-DQB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13762-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 4 chain", "gene_name": "HLA-DRB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q30154-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 5 chain", "gene_name": "HLA-DRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01903-1", "protein_name": "HLA class II histocompatibility antigen, DR alpha chain", "gene_name": "HLA-DRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P79483-1", "protein_name": "HLA class II histocompatibility antigen, DR beta 3 chain", "gene_name": "HLA-DRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32456-1", "protein_name": "Guanylate-binding protein 2", "gene_name": "GBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00978-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "IRF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZR9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM8", "gene_name": "TRIM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4K8-1", "protein_name": "Tripartite motif-containing protein 46", "gene_name": "TRIM46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8W5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM45", "gene_name": "TRIM45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYJ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM34", "gene_name": "TRIM34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM35", "gene_name": "TRIM35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y577-1", "protein_name": "E3 ubiquitin-protein ligase TRIM17", "gene_name": "TRIM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12899", "url": "https://www.uniprot.org/uniprotkb/Q12899" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9143706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 91 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Pax3-FKHR oncoprotein is unresponsive to the Pax3-associated repressor hDaxx.", "journal": "The EMBO journal", "date": "1999", "authors": "Hollenbach AD, Sublett JE, McPherson CJ, Grosveld G", "reference": { "type": "PubMed", "id": "10393185", "url": "https://pubmed.ncbi.nlm.nih.gov/10393185" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23759-3", "protein_name": "Paired box protein Pax-7", "gene_name": "PAX7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23760-1", "protein_name": "Paired box protein Pax-3", "gene_name": "PAX3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10393185", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 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Cell. Biol.", "date": "2000", "authors": "Li H, Leo C, Zhu J, Wu X, O'Neil J, Park E J, Chen J D", "reference": { "type": "PubMed", "id": "10669754", "url": "https://pubmed.ncbi.nlm.nih.gov/10669754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15379-1", "protein_name": "Histone deacetylase 3", "gene_name": "HDAC3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10669754", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Promyelocytic leukemia protein (PML) and Daxx participate in a novel nuclear pathway for apoptosis.", "journal": "J. 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Biol. Chem.", "date": "2001", "authors": "Ko Y G, Kang Y S, Park H, Seol W, Kim J, Kim T, Park H S, Choi E J, Kim S", "reference": { "type": "PubMed", "id": "11495919", "url": "https://pubmed.ncbi.nlm.nih.gov/11495919" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11495919", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hantavirus nucleocapsid protein interacts with the Fas-mediated apoptosis enhancer Daxx.", "journal": "J. Gen. Virol.", "date": "2002", "authors": "Li Xiao-Dong, M\u00e4kel\u00e4 Tomi P, Guo Deyin, Soliymani Rabah, Koistinen Vesa, Vapalahti Olli, Vaheri Antti, Lankinen Hilkka", "reference": { "type": "PubMed", "id": "11907324", "url": "https://pubmed.ncbi.nlm.nih.gov/11907324" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11907324", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Essential role of the 58-kDa microspherule protein in the modulation of Daxx-dependent transcriptional repression as revealed by nucleolar sequestration.", "journal": "J. Biol. 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"database": "iPTMnet", "id": "O35613", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35613" } ], "site_lbl": "Thr523", "uniprot_canonical_ac": "O35613-1" }, { "start_pos": 626, "end_pos": 626, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35613", "url": "https://www.uniprot.org/uniprotkb/O35613" }, { "database": "PubMed", "id": "12529400", "url": "https://pubmed.ncbi.nlm.nih.gov/12529400" }, { "database": "iPTMnet", "id": "O35613", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35613" } ], "site_lbl": "Ser626", "uniprot_canonical_ac": "O35613-1" }, { "start_pos": 669, "end_pos": 669, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by HIPK1", "evidence": [ { "database": "UniProtKB", "id": "O35613", "url": "https://www.uniprot.org/uniprotkb/O35613" }, { "database": "iPTMnet", "id": "O35613", 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Virol.", "date": "2003", "authors": "Zhao Lisa Y, Colosimo April L, Liu Yue, Wan Yanping, Liao Daiqing", "reference": { "type": "PubMed", "id": "14557665", "url": "https://pubmed.ncbi.nlm.nih.gov/14557665" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14557665", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Biophys. Res. Commun.", "date": "2004", "authors": "La Muhnho, Kim Karam, Park Jinhwi, Won Jungyeon, Lee Jeung-Hoon, Fu Ya-Min, Meadows Gary G, Joe Cheol O", "reference": { "type": "PubMed", "id": "15240113", "url": "https://pubmed.ncbi.nlm.nih.gov/15240113" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43791-1", "protein_name": "Speckle-type POZ protein", "gene_name": "SPOP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15240113", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BTB domain-containing speckle-type POZ protein (SPOP) serves as an adaptor of Daxx for ubiquitination by Cul3-based ubiquitin ligase.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Kwon JE, La M, Oh KH, Oh YM, Kim GR, Seol JH, Baek SH, Chiba T, Tanaka K, Bang OS, Joe CO, Chung CH", "reference": { "type": "PubMed", "id": "16524876", "url": "https://pubmed.ncbi.nlm.nih.gov/16524876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13618-1", "protein_name": "Cullin-3", "gene_name": "CUL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43791-1", "protein_name": "Speckle-type POZ protein", "gene_name": "SPOP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Daxx cooperates with the Axin/HIPK2/p53 complex to induce cell death.", "journal": "Cancer Res.", "date": "2007", "authors": "Li Q, Wang X, Wu X, Rui Y, Liu W, Wang J, Wang X, Liou YC, Ye Z, Lin SC", "reference": { "type": "PubMed", "id": "17210684", "url": "https://pubmed.ncbi.nlm.nih.gov/17210684" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 46, "end_pos": 46, 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "A suppressive role of the prolyl isomerase Pin1 in cellular apoptosis mediated by the death-associated protein Daxx.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Ryo A, Hirai A, Nishi M, Liou YC, Perrem K, Lin SC, Hirano H, Lee SW, Aoki I", "reference": { "type": "PubMed", "id": "17938171", "url": "https://pubmed.ncbi.nlm.nih.gov/17938171" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 178, "end_pos": 178, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", 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"gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FJ2-1", "protein_name": "Dynein light chain 2, cytoplasmic", "gene_name": "DYNLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19419-1", "protein_name": "ETS domain-containing protein Elk-1", "gene_name": "ELK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { 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{ "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75376-1", "protein_name": "Nuclear receptor corepressor 1", "gene_name": "NCOR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43237-1", "protein_name": "Cytoplasmic dynein 1 light intermediate chain 2", "gene_name": "DYNC1LI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15022-1", "protein_name": "Polycomb protein SUZ12", "gene_name": "SUZ12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00533-1", "protein_name": "Epidermal growth factor receptor", "gene_name": "EGFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18203656", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 100 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tegument proteins of human cytomegalovirus.", "journal": "Microbiology and molecular biology reviews : MMBR", "date": "2008", "authors": "Kalejta RF", "reference": { "type": "PubMed", "id": "18535146", "url": "https://pubmed.ncbi.nlm.nih.gov/18535146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19838-1", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "gene_name": "NFKB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16576-1", "protein_name": "Histone-binding 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"protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60907-1", "protein_name": "F-box-like/WD repeat-containing protein TBL1X", "gene_name": "TBL1X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75530-1", "protein_name": "Polycomb protein EED", "gene_name": "EED", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15910-1", "protein_name": "Histone-lysine N-methyltransferase EZH2", "gene_name": "EZH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZK7-1", "protein_name": "F-box-like/WD repeat-containing protein 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"tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09028-1", "protein_name": "Histone-binding protein RBBP4", "gene_name": "RBBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15379-1", "protein_name": "Histone deacetylase 3", "gene_name": "HDAC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83916-1", "protein_name": "Chromobox protein homolog 1", "gene_name": "CBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FJ2-1", "protein_name": "Dynein light chain 2, cytoplasmic", "gene_name": "DYNLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19419-1", "protein_name": "ETS domain-containing protein Elk-1", "gene_name": "ELK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75376-1", "protein_name": "Nuclear receptor corepressor 1", "gene_name": "NCOR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43237-1", "protein_name": "Cytoplasmic dynein 1 light intermediate chain 2", "gene_name": "DYNC1LI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15022-1", "protein_name": "Polycomb protein SUZ12", "gene_name": "SUZ12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00533-1", "protein_name": "Epidermal growth factor receptor", "gene_name": "EGFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18535146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 100 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tumour suppressor RASSF1A promotes MDM2 self-ubiquitination by disrupting the MDM2-DAXX-HAUSP complex.", "journal": "EMBO J.", "date": "2008", "authors": "Song Min Sup, Song Su Jung, Kim So Yeon, Oh Hyun Jung, Lim Dae-Sik", "reference": { "type": "PubMed", "id": "18566590", "url": "https://pubmed.ncbi.nlm.nih.gov/18566590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS23-1", "protein_name": "Ras association domain-containing protein 1", "gene_name": "RASSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00987-1", "protein_name": "E3 ubiquitin-protein ligase Mdm2", "gene_name": "MDM2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18566590", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human cytomegalovirus protein pp71 displaces the chromatin-associated factor ATRX from nuclear domain 10 at early stages of infection.", "journal": "J. Virol.", "date": "2008", "authors": "Lukashchuk Vera, McFarlane Steven, Everett Roger D, Preston Chris M", "reference": { "type": "PubMed", "id": "18922870", "url": "https://pubmed.ncbi.nlm.nih.gov/18922870" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18922870", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chromatin structure regulates human cytomegalovirus gene expression during latency, reactivation and lytic infection.", "journal": "Biochimica et biophysica acta", "date": "2010", "authors": "Sinclair J", "reference": { "type": "PubMed", "id": "19682613", "url": "https://pubmed.ncbi.nlm.nih.gov/19682613" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19838-1", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "gene_name": "NFKB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16576-1", "protein_name": "Histone-binding protein RBBP7", "gene_name": "RBBP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60907-1", "protein_name": "F-box-like/WD repeat-containing protein TBL1X", "gene_name": "TBL1X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75530-1", "protein_name": "Polycomb protein EED", "gene_name": "EED", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15910-1", "protein_name": "Histone-lysine N-methyltransferase EZH2", "gene_name": "EZH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZK7-1", "protein_name": "F-box-like/WD repeat-containing protein TBL1XR1", "gene_name": "TBL1XR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13227-1", "protein_name": "G protein pathway suppressor 2", "gene_name": "GPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13263-1", "protein_name": "Transcription intermediary factor 1-beta", "gene_name": "TRIM28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14576-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 1", "gene_name": "DYNC1I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6G9-1", "protein_name": "Cytoplasmic dynein 1 light intermediate chain 1", "gene_name": "DYNC1LI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09028-1", "protein_name": "Histone-binding protein RBBP4", "gene_name": "RBBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15379-1", "protein_name": "Histone deacetylase 3", "gene_name": "HDAC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83916-1", "protein_name": "Chromobox protein homolog 1", "gene_name": "CBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FJ2-1", "protein_name": "Dynein light chain 2, cytoplasmic", "gene_name": "DYNLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19419-1", "protein_name": "ETS domain-containing protein Elk-1", "gene_name": "ELK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75376-1", "protein_name": "Nuclear receptor corepressor 1", "gene_name": "NCOR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43237-1", "protein_name": "Cytoplasmic dynein 1 light intermediate chain 2", "gene_name": "DYNC1LI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human cytomegalovirus IE72 protein interacts with the transcriptional repressor hDaxx to regulate LUNA gene expression during lytic infection.", "journal": "J. Virol.", "date": "2010", "authors": "Reeves Matthew, Woodhall David, Compton Teresa, Sinclair John", "reference": { "type": "PubMed", "id": "20444888", "url": "https://pubmed.ncbi.nlm.nih.gov/20444888" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UER7", "url": "https://www.uniprot.org/uniprotkb/Q9UER7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20444888", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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