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PE, Giles GG, Severi G, Baglietto L, English DR, Cox A, Brock I, Elliott G, Reed MW, Beesley J, Chen X, Investigators K, Fletcher O, Gibson L, dos Santos Silva I, Peto J, Frank B, Heil J, Meindl A, Chang-Claude J, Hein R, Vrieling A, Flesch-Janys D, Southey MC, Smith L, Apicella C, Hopper JL, Dunning AM, Pooley KA, Pharoah PD, Hamann U, Pesch B, Ko YD, Easton DF, Chenevix-Trench G", "reference": { "type": "PubMed", "id": "21931171", "url": "https://pubmed.ncbi.nlm.nih.gov/21931171" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q99996", "url": "https://www.uniprot.org/uniprotkb/Q99996" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21931171", "abstract": "", "glycosylation": 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JM, Houck SA, Tang X, Zheng N, Major MB, Moon RT", "reference": { "type": "PubMed", "id": "22215675", "url": "https://pubmed.ncbi.nlm.nih.gov/22215675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JTC6-1", "protein_name": "APC membrane recruitment protein 1", "gene_name": "AMER1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JTC6", "url": "https://www.uniprot.org/uniprotkb/Q5JTC6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 286, "end_pos": 286, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5JTC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JTC6" }, { "database": "PubMed", "id": "22215675", "url": "https://pubmed.ncbi.nlm.nih.gov/22215675" } ], "site_lbl": 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Lower sensitivity to BTRC-triggered degradation, impaired phosphorylation by GSK3B and loss of cytoplasmic localization; when associated with A-96; A-107; A-111; A-115 and A-119. Does not affect NOTCH1-induced degradation; when associated with A-96. 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Preferentially localizes to the nucleus. Induces a more aggressive tissue invasion program. Lower sensitivity to BTRC-triggered degradation, impairs phosphorylation by GSK3B and does not affect NOTCH1-induced degradation; when associated with A-100. Lower sensitivity to BTRC-triggered degradation, impaired phosphorylation by GSK3B and loss of cytoplasmic localization; when associated with A-100; A-107; A-111; A-115 and A-119.", "evidence": [ { "database": "UniProtKB", "id": "O95863", "url": "https://www.uniprot.org/uniprotkb/O95863" }, { "database": "PubMed", "id": "15448698", "url": "https://pubmed.ncbi.nlm.nih.gov/15448698" }, { "database": "PubMed", "id": "20305697", "url": "https://pubmed.ncbi.nlm.nih.gov/20305697" }, { "database": "PubMed", "id": "22128911", "url": "https://pubmed.ncbi.nlm.nih.gov/22128911" }, { "database": "PubMed", "id": "15647282", "url": "https://pubmed.ncbi.nlm.nih.gov/15647282" }, { "database": "PubMed", "id": "29059170", "url": "https://pubmed.ncbi.nlm.nih.gov/29059170" }, { "database": "PubMed", "id": "25827072", "url": "https://pubmed.ncbi.nlm.nih.gov/25827072" } ], "uniprot_canonical_ac": "O95863-1" } ], "phosphorylation": [ { "start_pos": 100, "end_pos": 100, "kinase_uniprot_canonical_ac": 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"end_pos": 107, "kinase_uniprot_canonical_ac": "P49841-1", "kinase_gene_name": "GSK3B", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O95863", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O95863" }, { "database": "PubMed", "id": "15448698", "url": "https://pubmed.ncbi.nlm.nih.gov/15448698" }, { "database": "PubMed", "id": "20305697", "url": "https://pubmed.ncbi.nlm.nih.gov/20305697" } ], "site_lbl": "Ser107", "uniprot_canonical_ac": "O95863-1" }, { "start_pos": 111, "end_pos": 111, "kinase_uniprot_canonical_ac": "P49841-1", "kinase_gene_name": "GSK3B", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O95863", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O95863" }, { "database": "PubMed", "id": "15448698", "url": "https://pubmed.ncbi.nlm.nih.gov/15448698" }, { "database": "PubMed", "id": "20305697", "url": "https://pubmed.ncbi.nlm.nih.gov/20305697" } ], "site_lbl": "Ser111", "uniprot_canonical_ac": "O95863-1" }, { "start_pos": 115, "end_pos": 115, "kinase_uniprot_canonical_ac": "P49841-1", "kinase_gene_name": "GSK3B", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O95863", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O95863" }, { "database": "PubMed", "id": "15448698", "url": "https://pubmed.ncbi.nlm.nih.gov/15448698" }, { "database": "PubMed", "id": "20305697", "url": "https://pubmed.ncbi.nlm.nih.gov/20305697" } ], "site_lbl": "Ser115", "uniprot_canonical_ac": "O95863-1" }, { "start_pos": 119, "end_pos": 119, "kinase_uniprot_canonical_ac": "P49841-1", "kinase_gene_name": "GSK3B", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O95863", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O95863" }, { "database": "PubMed", "id": "15448698", "url": "https://pubmed.ncbi.nlm.nih.gov/15448698" }, { "database": "PubMed", "id": "20305697", "url": 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"field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 8 }, { "field": "total_sites", "count": 7 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Med. 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Am. Soc. Nephrol.", "date": "2018", "authors": "van der Ven Amelie T, Connaughton Dervla M, Ityel Hadas, Mann Nina, Nakayama Makiko, Chen Jing, Vivante Asaf, Hwang Daw-Yang, Schulz Julian, Braun Daniela A, Schmidt Johanna Magdalena, Schapiro David, Schneider Ronen, Warejko Jillian K, Daga Ankana, Majmundar Amar J, Tan Weizhen, Jobst-Schwan Tilman, Hermle Tobias, Widmeier Eugen, Ashraf Shazia, Amar Ali, Hoogstraaten Charlotte A, Hugo Hannah, Kitzler Thomas M, Kause Franziska, Kolvenbach Caroline M, Dai Rufeng, Spaneas Leslie, Amann Kassaundra, Stein Deborah R, Baum Michelle A, Somers Michael J G, Rodig Nancy M, Ferguson Michael A, Traum Avram Z, Daouk Ghaleb H, Bogdanovi\u0107 Radovan, Staji\u0107 Natasa, Soliman Neveen A, Kari Jameela A, El Desoky Sherif, Fathy Hanan M, Milosevic Danko, Al-Saffar Muna, Awad Hazem S, Eid Loai A, Selvin Aravind, Senguttuvan Prabha, Sanna-Cherchi Simone, Rehm Heidi L, MacArthur Daniel G, Lek Monkol, Laricchia Kristen M, Wilson Michael W, Mane Shrikant M, Lifton Richard P, Lee Richard S, Bauer Stuart B, Lu Weining, Reutter Heiko M, Tasic Velibor, Shril Shirlee, Hildebrandt Friedhelm", "reference": { "type": "PubMed", "id": "30143558", "url": "https://pubmed.ncbi.nlm.nih.gov/30143558" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48552", "url": "https://www.uniprot.org/uniprotkb/P48552" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30143558", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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A novel lipoprotein receptor of the low density lipoprotein receptor family predominantly expressed in brain.", "journal": "J. Biol. Chem.", "date": "1996", "authors": "Kim DH, Iijima H, Goto K, Sakai J, Ishii H, Kim HJ, Suzuki H, Kondo H, Saeki S, Yamamoto T", "reference": { "type": "PubMed", "id": "8626535", "url": "https://pubmed.ncbi.nlm.nih.gov/8626535" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14114", "url": "https://www.uniprot.org/uniprotkb/Q14114" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8626535", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exon/intron organization, chromosome localization, alternative splicing, and transcription units of the human apolipoprotein E receptor 2 gene.", "journal": "J. 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