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"count": 0 } ], "sort_fields": [] } ] }, { "title": "EGR2 is a gonadotropin-induced survival factor that controls the expression of IER3 in ovarian granulosa cells.", "journal": "Biochemical and biophysical research communications", "date": "2017", "authors": "Jin H, Won M, Shin E, Kim HM, Lee K, Bae J", "reference": { "type": "PubMed", "id": "27890615", "url": "https://pubmed.ncbi.nlm.nih.gov/27890615" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A6KT88-1", "protein_name": "Immediate early response 3", "gene_name": "Ier3", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P51774-1", "protein_name": "E3 SUMO-protein ligase EGR2", "gene_name": "Egr2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P46695-1", "protein_name": "Radiation-inducible immediate-early gene IEX-1", "gene_name": "IER3", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A6KT88", "url": 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"2000", "authors": "Kurup S, Jones H D, Holdsworth M J", "reference": { "type": "PubMed", "id": "10743655", "url": "https://pubmed.ncbi.nlm.nih.gov/10743655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4B5-1", "protein_name": "Prefoldin subunit 4", "gene_name": "PFD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q01593-1", "protein_name": "B3 domain-containing transcription factor ABI3", "gene_name": "ABI3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXD3-1", "protein_name": "E3 ubiquitin-protein ligase AIP2", "gene_name": "AIP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKL2-1", "protein_name": "Two-component response regulator-like APRR1", "gene_name": "APRR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M4B5", "url": "https://www.uniprot.org/uniprotkb/Q9M4B5" } ], "common_name": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prefoldin 6 is required for normal microtubule dynamics and organization in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2008-11-18", "authors": "Gu Ying, Deng Zhiping, Paredez Alexander R, DeBolt Seth, Wang Zhi-Yong, Somerville Chris", "reference": { "type": "PubMed", "id": "19004800", "url": "https://pubmed.ncbi.nlm.nih.gov/19004800" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4B5-1", "protein_name": "Prefoldin subunit 4", "gene_name": "PFD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJ98-1", "protein_name": "Prefoldin subunit 2", "gene_name": "PFD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P57741-1", "protein_name": "Prefoldin subunit 3", "gene_name": "PFD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P57742-1", "protein_name": "Prefoldin subunit 5", "gene_name": "PFD5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2HIK4-1", "protein_name": "Prefoldin subunit 6", "gene_name": "PFD6", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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signalosome in resetting the ethylene-signaling pathway in Arabidopsis.", "journal": "Plant J.", "date": "2008", "authors": "Christians Matthew J, Robles Linda M, Zeller Samantha M, Larsen Paul B", "reference": { "type": "PubMed", "id": "18429939", "url": "https://pubmed.ncbi.nlm.nih.gov/18429939" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9S814-1", "protein_name": "Ethylene-insensitive protein 2", "gene_name": "EIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWE6-1", "protein_name": "Enhanced ethylene response protein 5", "gene_name": "EER5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9S814", "url": "https://www.uniprot.org/uniprotkb/Q9S814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 152, "end_pos": 152, 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Biol.", "date": "2000", "authors": "Bischoff F, Vahlkamp L, Molendijk A, Palme K", "reference": { "type": "PubMed", "id": "10798620", "url": "https://pubmed.ncbi.nlm.nih.gov/10798620" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SFC6-1", "protein_name": "Rho GDP-dissociation inhibitor 1", "gene_name": "GDI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38912-1", "protein_name": "Rac-like GTP-binding protein ARAC3", "gene_name": "ARAC3; RAC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38937-1", "protein_name": "Rac-like GTP-binding protein ARAC5", "gene_name": "ARAC5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SFC6", "url": "https://www.uniprot.org/uniprotkb/Q9SFC6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The plastidic 2-cysteine peroxiredoxin is a target for a thioredoxin involved in the protection of the photosynthetic apparatus against oxidative damage.", "journal": "Plant Cell", "date": "2002", "authors": "Broin M\u00e9lanie, Cuin\u00e9 St\u00e9phan, Eymery Fran\u00e7oise, Rey Pascal", "reference": { "type": "PubMed", "id": "12084836", "url": "https://pubmed.ncbi.nlm.nih.gov/12084836" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SGS4-1", "protein_name": "Thioredoxin-like protein CDSP32, chloroplastic", "gene_name": "CDSP32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96291-1", "protein_name": "2-Cys peroxiredoxin BAS1, chloroplastic", "gene_name": "BAS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU86-1", "protein_name": "Peroxiredoxin Q, chloroplastic", "gene_name": "PRXQ", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SGS4", "url": "https://www.uniprot.org/uniprotkb/Q9SGS4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12084836", 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Edith, Zaffagnini Mirko, Marchand Christophe H, Le Mar\u00e9chal Pierre, Lemaire St\u00e9phane D, Rey Pascal", "reference": { "type": "PubMed", "id": "20236937", "url": "https://pubmed.ncbi.nlm.nih.gov/20236937" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SGS4-1", "protein_name": "Thioredoxin-like protein CDSP32, chloroplastic", "gene_name": "CDSP32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M2-1", "protein_name": "Peptide methionine sulfoxide reductase B1, chloroplastic", "gene_name": "MSRB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SGS4", "url": "https://www.uniprot.org/uniprotkb/Q9SGS4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 186, "end_pos": 186, "sequence_org": "C", "sequence_mut": "S", "comment": 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"uniprot_canonical_ac": "Q84W66-1", "protein_name": "Nuclear transcription factor Y subunit B-6", "gene_name": "NFYB6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZQH2-1", "protein_name": "DNA polymerase II subunit B4", "gene_name": "NF-YB11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGJ3-1", "protein_name": "Nuclear transcription factor Y subunit B-2", "gene_name": "NFYB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82132-1", "protein_name": "Dehydration-responsive element-binding protein 2A", "gene_name": "DREB2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9X4-1", "protein_name": "Nuclear transcription factor Y subunit A-2", "gene_name": "NF-YA2; NFYA2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SIT9", "url": "https://www.uniprot.org/uniprotkb/Q9SIT9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25490919", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ 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Plant Sci.", "date": "2016", "authors": "Zhao Hang, Wu Di, Kong Fanying, Lin Ke, Zhang Haishen, Li Gang", "reference": { "type": "PubMed", "id": "28119722", "url": "https://pubmed.ncbi.nlm.nih.gov/28119722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SIT9-1", "protein_name": "Nuclear transcription factor Y subunit B-7", "gene_name": "NFYB7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23310-1", "protein_name": "Nuclear transcription factor Y subunit B-3", "gene_name": "NFYB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LN09-1", "protein_name": "DNA polymerase II subunit B3-1", "gene_name": "DPB3-1; NF-YC10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLG0-1", "protein_name": "Nuclear transcription factor Y subunit B-1", "gene_name": "NF-YB1; NFYB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84W66-1", "protein_name": "Nuclear transcription factor Y subunit B-6", "gene_name": "NFYB6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZQH2-1", "protein_name": "DNA polymerase II subunit B4", "gene_name": "NF-YB11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGJ3-1", "protein_name": "Nuclear transcription factor Y subunit B-2", "gene_name": "NFYB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9X4-1", "protein_name": "Nuclear transcription factor Y subunit A-2", "gene_name": "NF-YA2; NFYA2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SIT9", "url": "https://www.uniprot.org/uniprotkb/Q9SIT9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28119722", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Additive contribution of AMT1;1 and AMT1;3 to high-affinity ammonium uptake across the plasma membrane of nitrogen-deficient Arabidopsis roots.", "journal": "The Plant journal : for cell and molecular biology", "date": "2006-11", "authors": "Loqu\u00e9 Dominique, Yuan Lixing, Kojima Soichi, Gojon Alain, Wirth Judith, Gazzarrini Sonia, Ishiyama Keiki, Takahashi Hideki, von Wir\u00e9n Nicolaus", "reference": { "type": "PubMed", "id": "17026539", "url": "https://pubmed.ncbi.nlm.nih.gov/17026539" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SQH9-1", "protein_name": "Ammonium transporter 1 member 3", "gene_name": "AMT1-3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P54144-1", "protein_name": "Ammonium transporter 1 member 1", "gene_name": "AMT1-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SQH9", "url": "https://www.uniprot.org/uniprotkb/Q9SQH9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17026539", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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"Cytosolic NADP-dependent isocitrate dehydrogenase contributes to redox homeostasis and the regulation of pathogen responses in Arabidopsis leaves.", "journal": "Plant, cell & environment", "date": "2010-07", "authors": "Mhamdi Amna, Mauve Caroline, Gouia Houda, Saindrenan Patrick, Hodges Michael, Noctor Graham", "reference": { "type": "PubMed", "id": "20199623", "url": "https://pubmed.ncbi.nlm.nih.gov/20199623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SRZ6-1", "protein_name": "Cytosolic isocitrate dehydrogenase [NADP]", "gene_name": "CICDH", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SRZ6", "url": "https://www.uniprot.org/uniprotkb/Q9SRZ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20199623", "abstract": "", "glycosylation": [], 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