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Identification and characterization of essential mitochondrial accessory protein components.", "journal": "J. Biol. Chem.", "date": "2003", "authors": "Picciocchi Antoine, Douce Roland, Alban Claude", "reference": { "type": "PubMed", "id": "12714594", "url": "https://pubmed.ncbi.nlm.nih.gov/12714594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S904-1", "protein_name": "Adrenodoxin-like protein 2, mitochondrial", "gene_name": "MFDX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W3L1-1", "protein_name": "NADPH:adrenodoxin oxidoreductase, mitochondrial", "gene_name": "MFDR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0V0-1", "protein_name": "Adrenodoxin-like protein 1, mitochondrial", "gene_name": "MFDX1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S904", "url": "https://www.uniprot.org/uniprotkb/Q8S904" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12714594", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and molecular characterization of mitochondrial ferredoxins and ferredoxin reductase from Arabidopsis.", "journal": "Plant Mol. 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein phosphatases PP2A, PP4 and PP6: mediators and regulators in development and responses to environmental cues.", "journal": "Plant Cell Environ.", "date": "2014", "authors": "Lillo Cathrine, Kataya Amr R A, Heidari Behzad, Creighton Maria T, Nemie-Feyissa Dugassa, Ginbot Zekarias, Jonassen Else M", "reference": { "type": "PubMed", "id": "24810976", "url": "https://pubmed.ncbi.nlm.nih.gov/24810976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VXY4-1", "protein_name": "TIP41-like protein", "gene_name": "TIP41L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LDQ4-1", "protein_name": "PP2A regulatory subunit TAP46", "gene_name": "TAP46", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VXY4", "url": 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cycle-related and polarity-related proteins using Schizosaccharomyces pombe.", "journal": "Plant J.", "date": "1996", "authors": "Xia G, Ramachandran S, Hong Y, Chan Y S, Simanis V, Chua N H", "reference": { "type": "PubMed", "id": "8893552", "url": "https://pubmed.ncbi.nlm.nih.gov/8893552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VXY4-1", "protein_name": "TIP41-like protein", "gene_name": "TIP41L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92985-1", "protein_name": "Ran-binding protein 1 homolog c", "gene_name": "RANBP1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LEZ4-1", "protein_name": "Protein MICROTUBULE BINDING PROTEIN 2C", "gene_name": "MBP2C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38912-1", "protein_name": "Rac-like GTP-binding protein ARAC3", "gene_name": "ARAC3; RAC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JRB0-1", "protein_name": "Transcription 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Carsten, Traub Michaela, Kunz H-Henning, Hach Stefanie, Trentmann Oliver, M\u00f6hlmann Torsten", "reference": { "type": "PubMed", "id": "21642237", "url": "https://pubmed.ncbi.nlm.nih.gov/21642237" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VXY7-1", "protein_name": "Equilibrative nucleotide transporter 1", "gene_name": "ENT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VXY7", "url": "https://www.uniprot.org/uniprotkb/Q8VXY7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21642237", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enhancer trapping identifies TRI, an Arabidopsis gene up-regulated by pathogen infection.", "journal": "Mol. Plant Microbe Interact.", "date": "2004", "authors": "Fridborg Ingela, Williams Alan, Yang Aidong, MacFarlane Stuart, Coutts Katherine, Angell Susan", "reference": { "type": "PubMed", "id": "15497401", "url": "https://pubmed.ncbi.nlm.nih.gov/15497401" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYI5-1", "protein_name": "VQ motif-containing protein 10", "gene_name": "VQ10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYI5", "url": "https://www.uniprot.org/uniprotkb/Q8VYI5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15497401", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aspartic proteinase content of the Arabidopsis genome.", "journal": "Curr. Protein Pept. Sci.", "date": "2005", "authors": "Faro Carlos, Gal Susannah", "reference": { "type": "PubMed", "id": "16381599", "url": "https://pubmed.ncbi.nlm.nih.gov/16381599" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYV9-1", "protein_name": "Aspartyl protease family protein 1", "gene_name": "APF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LEW3-1", "protein_name": "Aspartyl protease AED1", "gene_name": "AED1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNJ3-1", "protein_name": "Aspartyl protease family protein 2", "gene_name": "APF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9A8-1", "protein_name": "Aspartyl protease APCB1", "gene_name": "APCB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYV9", "url": "https://www.uniprot.org/uniprotkb/Q8VYV9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16381599", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants.", "journal": "J. Biol. Chem.", "date": "2011", "authors": "Im Chak Han, Hwang Sung Min, Son Young Sim, Heo Jae Bok, Bang Woo Young, Suwastika I Nengah, Shiina Takashi, Bahk Jeong Dong", "reference": { "type": "PubMed", "id": "21205822", "url": "https://pubmed.ncbi.nlm.nih.gov/21205822" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZB9-1", "protein_name": "Large ribosomal subunit protein uL1z", "gene_name": "RPL10AA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59230-1", "protein_name": "Large ribosomal subunit protein uL1y", "gene_name": "RPL10AB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59231-1", "protein_name": "Large ribosomal subunit protein uL1x", "gene_name": "RPL10AC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C923-1", "protein_name": "Nuclear/nucleolar GTPase 2", "gene_name": "NUG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZB9", "url": "https://www.uniprot.org/uniprotkb/Q8VZB9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21205822", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The GCR2 gene family is not required for ABA control of seed germination and early seedling development in Arabidopsis.", "journal": "PloS one", "date": "2008-08-20", "authors": "Guo Jianjun, Zeng Qingning, Emami Mohammad, Ellis Brian E, Chen Jin-Gui", "reference": { "type": "PubMed", "id": "18714360", "url": "https://pubmed.ncbi.nlm.nih.gov/18714360" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZQ6-1", "protein_name": "LanC-like protein GCL2", "gene_name": "GCL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJN7-1", "protein_name": "LanC-like protein GCL1", "gene_name": "GCL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IEM5-1", "protein_name": "LanC-like protein GCR2", "gene_name": "GCR2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZQ6", "url": "https://www.uniprot.org/uniprotkb/Q8VZQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18714360", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kinesin-related proteins with a mitochondrial targeting signal.", "journal": "Plant Physiol.", "date": "2001", "authors": "Itoh R, Fujiwara M, Yoshida S", "reference": { "type": "PubMed", "id": "11706156", "url": "https://pubmed.ncbi.nlm.nih.gov/11706156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W5R5-1", "protein_name": "Kinesin-like protein KIN-7D, mitochondrial", "gene_name": "KIN7D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W5R6-1", "protein_name": "Kinesin-like protein KIN-7C, mitochondrial", "gene_name": "KIN7C", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W5R5", "url": "https://www.uniprot.org/uniprotkb/Q8W5R5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11706156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Iron-sulphur cluster assembly in plants: distinct NFU proteins in mitochondria and plastids from Arabidopsis thaliana.", "journal": "Biochem. J.", "date": "2003", "authors": "L\u00e9on S\u00e9bastien, Touraine Brigitte, Ribot C\u00e9cile, Briat Jean-Fran\u00e7ois, Lobr\u00e9aux St\u00e9phane", "reference": { "type": "PubMed", "id": "12553879", "url": "https://pubmed.ncbi.nlm.nih.gov/12553879" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93W77-1", "protein_name": "NifU-like protein 1, chloroplastic", "gene_name": "NIFU1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93W20-1", "protein_name": "NifU-like protein 2, chloroplastic", "gene_name": "NIFU2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84RQ7-1", "protein_name": "NifU-like protein 3, chloroplastic", "gene_name": "NIFU3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8J2-1", "protein_name": "NifU-like protein 5, mitochondrial", "gene_name": "NIFU5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIG6-1", "protein_name": "NifU-like protein 4, mitochondrial", "gene_name": "NFU4; NIFU4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93W77", "url": "https://www.uniprot.org/uniprotkb/Q93W77" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12553879", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis chloroplastic NifU-like protein CnfU, which can act as an iron-sulfur cluster scaffold protein, is required for biogenesis of ferredoxin and photosystem I.", "journal": "Plant Cell", "date": "2004", "authors": "Yabe Toshiki, Morimoto Kozo, Kikuchi Shingo, Nishio Kazuaki, Terashima Ichiro, Nakai Masato", "reference": { "type": "PubMed", "id": "15031412", "url": "https://pubmed.ncbi.nlm.nih.gov/15031412" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93W77-1", "protein_name": "NifU-like protein 1, chloroplastic", "gene_name": "NIFU1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93W20-1", "protein_name": "NifU-like protein 2, chloroplastic", "gene_name": "NIFU2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93W77", "url": "https://www.uniprot.org/uniprotkb/Q93W77" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15031412", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.", "journal": "J. Proteome Res.", "date": "2006", "authors": "Elortza F, Mohammed S, Bunkenborg J, Foster LJ, Nuhse TS, Brodbeck U, Peck SC, Jensen ON", "reference": { "type": "PubMed", "id": "16602701", "url": "https://pubmed.ncbi.nlm.nih.gov/16602701" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93XX5-1", "protein_name": "PI-PLC X domain-containing protein At5g67130", "gene_name": "K21H1.9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q10589-1", "protein_name": "Bone marrow stromal antigen 2", "gene_name": "BST2", "tax_name": "Human" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93XX5", "url": "https://www.uniprot.org/uniprotkb/Q93XX5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16602701", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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[], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93Z17-1", "protein_name": "Large ribosomal subunit protein uL14mz", "gene_name": "HLP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84JG5-1", "protein_name": "Large ribosomal subunit protein uL14my", "gene_name": "HLL", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z17", "url": "https://www.uniprot.org/uniprotkb/Q93Z17" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11752383", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GIGANTUS1 (GTS1), a member of Transducin/WD40 protein superfamily, controls seed germination, growth and biomass accumulation through ribosome-biogenesis protein interactions in Arabidopsis thaliana.", "journal": "BMC plant biology", "date": "2014-01-27", "authors": "Gachomo Emma W, Jimenez-Lopez Jose C, Baptiste Lyla Jno, Kotchoni Simeon O", "reference": { "type": "PubMed", "id": "24467952", "url": "https://pubmed.ncbi.nlm.nih.gov/24467952" }, 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis.", "journal": "Current biology : CB", "date": "2013-11-04", "authors": "Cromer Laurence, Jolivet Sylvie, Horlow Christine, Chelysheva Liudmila, Heyman Jefri, De Jaeger Geert, Koncz Csaba, De Veylder Lieven, Mercier Raphael", "reference": { "type": "PubMed", "id": "24206843", "url": "https://pubmed.ncbi.nlm.nih.gov/24206843" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94CK6-1", "protein_name": "Protein PATRONUS 2", "gene_name": "PANS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J3S1-1", "protein_name": "SHUGOSHIN 1", "gene_name": "SGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WTB8-1", "protein_name": "SHUGOSHIN 2", "gene_name": "SGO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGU6-1", "protein_name": "Cell division cycle protein 27 homolog B", "gene_name": "CDC27B; HBT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJG6-1", "protein_name": "Protein PATRONUS 1", "gene_name": "PANS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZA4-1", "protein_name": "Cell division cycle 20.1, cofactor of APC complex", "gene_name": "CDC20-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94CK6", "url": "https://www.uniprot.org/uniprotkb/Q94CK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 14, "end_pos": 16, "sequence_org": "DEN", "sequence_mut": "AAA", "comment": "No effect on the interaction with CDC27B, but strongly decreased interaction with CDC20-1. Loss of interaction with CDC20-1 and lethality; when associated with 46-LKAV-49.", "evidence": [ { "database": "UniProtKB", "id": "Q9LJG6", "url": "https://www.uniprot.org/uniprotkb/Q9LJG6" }, { "database": "PubMed", "id": "24206843", "url": "https://pubmed.ncbi.nlm.nih.gov/24206843" } ], "uniprot_canonical_ac": "Q9LJG6-1" }, { "start_pos": 46, "end_pos": 49, "sequence_org": "RKAL", "sequence_mut": "LKAV", "comment": "No effect on the interaction with CDC27B, but strongly decreased interaction with CDC20-1. 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step of plant sterol biosynthesis.", "journal": "Eur. J. Biochem.", "date": "1997", "authors": "Bouvier-Nav\u00e9 P, Husselstein T, Desprez T, Benveniste P", "reference": { "type": "PubMed", "id": "9208946", "url": "https://pubmed.ncbi.nlm.nih.gov/9208946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94JS4-1", "protein_name": "24-methylenesterol C-methyltransferase 3", "gene_name": "SMT3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94JS4", "url": "https://www.uniprot.org/uniprotkb/Q94JS4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9208946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Biophys.", "date": "1997", "authors": "Maughan J A, Nugent J H, Hallahan D L", "reference": { "type": "PubMed", "id": "9143359", "url": "https://pubmed.ncbi.nlm.nih.gov/9143359" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96514-1", "protein_name": "Cytochrome P450 71B7", "gene_name": "CYP71B7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q96514", "url": "https://www.uniprot.org/uniprotkb/Q96514" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9143359", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tissue-specific expression and developmental regulation of cytochrome b561 genes in Arabidopsis thaliana and Raphanus sativus.", "journal": "Physiol. 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"date": "2011", "authors": "Hewson CA, Watson JR, Liu WL, Fidock MD", "reference": { "type": "PubMed", "id": "21255156", "url": "https://pubmed.ncbi.nlm.nih.gov/21255156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D3Z9Y3-1", "protein_name": "Ceramide kinase", "gene_name": "Cerk", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3Z9Y3", "url": "https://www.uniprot.org/uniprotkb/D3Z9Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.21255156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"EMBO Rep.", "date": "2016", "authors": "Fukuda T, Nagashima S, Abe T, Kiyonari H, Inatome R, Yanagi S", "reference": { "type": "PubMed", "id": "27737934", "url": "https://pubmed.ncbi.nlm.nih.gov/27737934" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D3ZEY0-1", "protein_name": "Coiled-coil domain-containing protein 141", "gene_name": "Ccdc141", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9Z2V5-1", "protein_name": "Protein deacetylase HDAC6", "gene_name": "Hdac6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8Q6-1", "protein_name": "Coiled-coil domain-containing protein 141", "gene_name": "Ccdc141", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZEY0", "url": "https://www.uniprot.org/uniprotkb/D3ZEY0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.27737934", "abstract": "", 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