[ { "title": "A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis.", "journal": "Curr. 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Biol.", "date": "2012", "authors": "Lorkovi\u0107 Zdravko J, Naumann Ulf, Matzke Antonius J M, Matzke Marjori", "reference": { "type": "PubMed", "id": "22560611", "url": "https://pubmed.ncbi.nlm.nih.gov/22560611" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94A79-1", "protein_name": "Protein DEFECTIVE IN MERISTEM SILENCING 3", "gene_name": "DMS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56Y74-1", "protein_name": "Protein MICRORCHIDIA 6", "gene_name": "MORC6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94A79", "url": "https://www.uniprot.org/uniprotkb/Q94A79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22560611", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82741-1", "protein_name": "Magnesium dechelatase SGR1, chloroplastic", "gene_name": "SGR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q66WT5-1", "protein_name": "Magnesium dechelatase SGR2, chloroplastic", "gene_name": "SGR2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AQ9", "url": "https://www.uniprot.org/uniprotkb/Q94AQ9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.27604697", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AZ2", "url": "https://www.uniprot.org/uniprotkb/Q94AZ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "phosphorylation": [ { "start_pos": 485, "end_pos": 485, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "PRO", "id": "Q94AZ2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AZ2" }, { "database": "iPTMnet", "id": "Q94AZ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AZ2" }, { "database": "PubMed", "id": "27884939", "url": "https://pubmed.ncbi.nlm.nih.gov/27884939" } ], "site_lbl": "Thr485", "uniprot_canonical_ac": "Q94AZ2-1" } ], "record_id": "pubmed.27884939", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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Daniel, Geelen Danny, Blanchoin Laurent, Berger Fr\u00e9d\u00e9ric", "reference": { "type": "PubMed", "id": "15765105", "url": "https://pubmed.ncbi.nlm.nih.gov/15765105" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94B77-1", "protein_name": "Formin-like protein 5", "gene_name": "FH5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94B77", "url": "https://www.uniprot.org/uniprotkb/Q94B77" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15765105", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Adaptor Protein ENY2 Is a Component of the Deubiquitination Module of the Arabidopsis SAGA Transcriptional Co-activator Complex but not of the TREX-2 Complex.", "journal": "Journal of molecular biology", "date": "2018-05-11", "authors": "Pfab Alexander, Bruckmann Astrid, Nazet Julian, Merkl Rainer, Grasser Klaus D", "reference": { "type": "PubMed", "id": "29588169", "url": "https://pubmed.ncbi.nlm.nih.gov/29588169" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94BV2-1", "protein_name": "SAGA-associated factor 11", "gene_name": "SGF11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LEW0-1", "protein_name": "Ubiquitin C-terminal hydrolase 22", "gene_name": "UBP22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NQ54-1", "protein_name": "Transcription and mRNA export factor ENY2", "gene_name": "ENY2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q949S9-1", "protein_name": "Pre-mRNA-splicing factor SPF27 homolog", "gene_name": "MOS4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94BV2", "url": "https://www.uniprot.org/uniprotkb/Q94BV2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.29588169", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis PEROXIN11c-e, FISSION1b, and DYNAMIN-RELATED PROTEIN3A cooperate in cell cycle-associated replication of peroxisomes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Lingard Matthew J, Gidda Satinder K, Bingham Scott, Rothstein Steven J, Mullen Robert T, Trelease Richard N", "reference": { "type": "PubMed", "id": "18539750", "url": 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The plant nuclear envelope protein MAF1 has an additional location at the Golgi and binds to a novel Golgi-associated coiled-coil protein.", "journal": "Planta", "date": "2005", "authors": "Patel Shalaka, Brkljacic Jelena, Gindullis Frank, Rose Annkatrin, Meier Iris", "reference": { "type": "PubMed", "id": "16231153", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis eIF5A3 influences growth and the response to osmotic and nutrient stress.", "journal": "Plant, cell & environment", "date": "2010-10", "authors": "Ma Fengshan, Liu Zhongda, Wang Tzann-Wei, Hopkins Marianne T, Peterson Carol A, Thompson John E", "reference": { "type": "PubMed", "id": "20492553", "url": "https://pubmed.ncbi.nlm.nih.gov/20492553" }, "referenced_glycans": [], "referenced_proteins": [ { 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Behav.", "date": "2012", "authors": "Shikata Hiromasa, Nakashima Moeko, Matsuoka Ken, Matsushita Tomonao", "reference": { "type": "PubMed", "id": "22751357", "url": "https://pubmed.ncbi.nlm.nih.gov/22751357" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C5J3-1", "protein_name": "Protein RRC1", "gene_name": "RRC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5J3", "url": "https://www.uniprot.org/uniprotkb/Q9C5J3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22751357", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The chloroplastic protein translocation channel Toc75 and its paralog OEP80 represent two distinct protein families and are targeted to the chloroplastic outer envelope by different mechanisms.", "journal": "Plant J.", "date": "2004", "authors": "Inoue Kentaro, Potter Daniel", "reference": { "type": "PubMed", "id": "15255865", "url": "https://pubmed.ncbi.nlm.nih.gov/15255865" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C5J8-1", "protein_name": "Outer envelope protein 80, chloroplastic", "gene_name": "OEP80", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5J8", "url": "https://www.uniprot.org/uniprotkb/Q9C5J8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15255865", "abstract": 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cell and molecular biology", "date": "2002-02", "authors": "Liu Cm Chun-ming, McElver John, Tzafrir Iris, Joosen Ronny, Wittich Peter, Patton David, Van Lammeren Andre A M, Meinke David", "reference": { "type": "PubMed", "id": "11846874", "url": "https://pubmed.ncbi.nlm.nih.gov/11846874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C5Y4-1", "protein_name": "Structural maintenance of chromosomes protein 2-1", "gene_name": "SMC2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56YN8-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3; TTN7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6Q1P4-1", "protein_name": "Structural maintenance of chromosomes protein 1", "gene_name": "SMC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5Y4", "url": "https://www.uniprot.org/uniprotkb/Q9C5Y4" 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in early development and A-type cyclin stabilization.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012-08-21", "authors": "Eloy Nubia B, Gonzalez Nathalie, Van Leene Jelle, Maleux Katrien, Vanhaeren Hannes, De Milde Liesbeth, Dhondt Stijn, Vercruysse Leen, Witters Erwin, Mercier Rapha\u00ebl, Cromer Laurence, Beemster Gerrit T S, Remaut Han, Van Montagu Marc C E, De Jaeger Geert, Ferreira Paulo C G, Inz\u00e9 Dirk", "reference": { "type": "PubMed", "id": "22869741", "url": "https://pubmed.ncbi.nlm.nih.gov/22869741" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C613-1", "protein_name": "Protein SAMBA", "gene_name": "SAMBA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGU6-1", "protein_name": "Cell division cycle protein 27 homolog B", "gene_name": "CDC27B; HBT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38819-1", "protein_name": "Cyclin-A2-3", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis mTERF15 is required for mitochondrial nad2 intron 3 splicing and functional complex I activity.", "journal": "PloS one", "date": "2014", "authors": "Hsu Ya-Wen, Wang Huei-Jing, Hsieh Ming-Hsiun, Hsieh Hsu-Liang, Jauh Guang-Yuh", "reference": { "type": "PubMed", "id": "25402171", "url": "https://pubmed.ncbi.nlm.nih.gov/25402171" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C6A1-1", "protein_name": "Transcription termination factor MTERF15, mitochondrial", "gene_name": "MTERF15", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C6A1", "url": "https://www.uniprot.org/uniprotkb/Q9C6A1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" 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"McCarthy Ryan L, Zhong Ruiqin, Ye Zheng-Hua", "reference": { "type": "PubMed", "id": "19808805", "url": "https://pubmed.ncbi.nlm.nih.gov/19808805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C6U1-1", "protein_name": "Transcription factor MYB83", "gene_name": "MYB83", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8W9-1", "protein_name": "NAC domain-containing protein 30", "gene_name": "NAC030", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVA1-1", "protein_name": "NAC domain-containing protein 101", "gene_name": "NAC101", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXV2-1", "protein_name": "Transcription factor MYB46", "gene_name": "MYB46", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C6U1", "url": "https://www.uniprot.org/uniprotkb/Q9C6U1" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes.", "journal": "Plant & cell physiology", "date": "2012-02", "authors": "Zhong Ruiqin, Ye Zheng-Hua", "reference": { "type": "PubMed", "id": "22197883", "url": "https://pubmed.ncbi.nlm.nih.gov/22197883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C6U1-1", "protein_name": "Transcription factor MYB83", "gene_name": "MYB83", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R0C4-1", "protein_name": "Transcription factor MYB52", "gene_name": "MYB52", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R0A6-1", "protein_name": "Transcription factor MYB63", "gene_name": "MYB63", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXV2-1", "protein_name": "Transcription factor MYB46", "gene_name": "MYB46", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SA47-1", "protein_name": "Transcription factor MYB58", "gene_name": "MYB58", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C6U1", "url": "https://www.uniprot.org/uniprotkb/Q9C6U1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22197883", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "The Arabidopsis checkpoint protein Bub3.1 is essential for gametophyte development.", "journal": "Front. Biosci.", "date": "2008", "authors": "Lermontova Inna, Fuchs Joerg, Schubert Ingo", "reference": { "type": "PubMed", "id": "18508582", "url": "https://pubmed.ncbi.nlm.nih.gov/18508582" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C701-1", "protein_name": "Mitotic checkpoint protein BUB3.2", "gene_name": "BUB3.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJN8-1", "protein_name": "Mitotic checkpoint protein BUB3.1", "gene_name": "BUB3.1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C701", "url": "https://www.uniprot.org/uniprotkb/Q9C701" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18508582", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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[] } ] }, { "title": "AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro.", "journal": "Molecular genetics and genomics : MGG", "date": "2005-03", "authors": "Hwang Moo Gak, Kim Kyunghye, Lee Won-Kyung, Cho Myeon Haeng", "reference": { "type": "PubMed", "id": "15688221", "url": "https://pubmed.ncbi.nlm.nih.gov/15688221" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C7B1-1", "protein_name": "Telomere repeat-binding protein 3", "gene_name": "TRP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFY9-1", "protein_name": "Telomere repeat-binding protein 4", "gene_name": "TRP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7L8-1", "protein_name": "Telomere repeat-binding protein 1", "gene_name": "TRP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SNB9-1", "protein_name": "Telomere repeat-binding protein 2", "gene_name": "TRFL1; TRP2", 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"Morita-Yamamuro Chizuko, Tsutsui Tomokazu, Sato Masanao, Yoshioka Hirofumi, Tamaoki Masanori, Ogawa Daisuke, Matsuura Hideyuki, Yoshihara Teruhiko, Ikeda Akira, Uyeda Ichiro, Yamaguchi Junji", "reference": { "type": "PubMed", "id": "15799997", "url": "https://pubmed.ncbi.nlm.nih.gov/15799997" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C7N2-1", "protein_name": "MACPF domain-containing protein CAD1", "gene_name": "CAD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7N2", "url": "https://www.uniprot.org/uniprotkb/Q9C7N2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15799997", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Behav.", "date": "2009", "authors": "Ding Yong, Lapko Hanna, Ndamukong Ivan, Xia Yuannan, Al-Abdallat Ayed, Lalithambika Sreedevi, Sadder Monther, Saleh Abdelaty, Fromm Michael, Riethoven Jean-Jack, Lu Guoqing, Avramova Zoya", "reference": { "type": "PubMed", "id": "19901554", "url": "https://pubmed.ncbi.nlm.nih.gov/19901554" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C7N5-1", "protein_name": "GDSL esterase/lipase At1g29660", "gene_name": "F15D2.21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5X4-1", "protein_name": "Histone H3-lysine(4) N-trimethyltransferase ATX1", "gene_name": "ATX1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J3T8-1", "protein_name": "Phosphatidylinositol-3-phosphatase myotubularin-1", "gene_name": "MTM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JWB3-1", "protein_name": "Phosphatidylinositol-3-phosphatase myotubularin-2", "gene_name": "MTM2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7N5", "url": "https://www.uniprot.org/uniprotkb/Q9C7N5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19901554", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "New aspects of Phloem-mediated long-distance lipid signaling in plants.", "journal": "Front. 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"reference": { "type": "PubMed", "id": "24755512", "url": "https://pubmed.ncbi.nlm.nih.gov/24755512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C7N5-1", "protein_name": "GDSL esterase/lipase At1g29660", "gene_name": "F15D2.21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S9J6-1", "protein_name": "Aspartyl protease family protein At5g10770", "gene_name": "T30N20_40", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SU72-1", "protein_name": "Protein EDS1", "gene_name": "EDS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04496-1", "protein_name": "Aspartyl protease AED3", "gene_name": "AED3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LEW3-1", "protein_name": "Aspartyl protease AED1", "gene_name": "AED1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZF5-1", "protein_name": "Lectin-like protein", "gene_name": "LLP", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7N5", "url": "https://www.uniprot.org/uniprotkb/Q9C7N5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24755512", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis SMALL AUXIN UP RNA63 promotes hypocotyl and stamen filament elongation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-08", "authors": "Chae Keun, Isaacs Cameron G, Reeves Paul H, Maloney Gregory S, Muday Gloria K, Nagpal Punita, Reed Jason W", "reference": { "type": "PubMed", "id": "22507274", "url": "https://pubmed.ncbi.nlm.nih.gov/22507274" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C7Q8-1", "protein_name": "Auxin-responsive protein SAUR62", "gene_name": "SAUR62", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I1H5-1", "protein_name": "Auxin-responsive protein SAUR63", "gene_name": "SAUR63", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7Q8", "url": "https://www.uniprot.org/uniprotkb/Q9C7Q8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22507274", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and initial characterization of the Arabidopsis thaliana endoplasmic reticulum oxidoreductins.", "journal": "Antioxidants & redox signaling", "date": "2003-08", "authors": "Dixon David P, Van Lith Marcel, Edwards Robert, Benham Adam", "reference": { "type": "PubMed", "id": "13678526", "url": "https://pubmed.ncbi.nlm.nih.gov/13678526" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C7S7-1", "protein_name": "Endoplasmic reticulum oxidoreductin-1", "gene_name": "AERO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7X9I4-1", "protein_name": "Endoplasmic reticulum oxidoreductin-2", "gene_name": "AERO2; ERO2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7S7", "url": "https://www.uniprot.org/uniprotkb/Q9C7S7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.13678526", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis.", "journal": "The Plant cell", "date": "2001-11", "authors": "Lam B C, Sage T L, Bianchi F, Blumwald E", "reference": { "type": "PubMed", "id": "11701884", "url": "https://pubmed.ncbi.nlm.nih.gov/11701884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C865-1", "protein_name": "SH3 domain-containing protein 1", "gene_name": "SH3P1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0K5-1", "protein_name": "Leucine-rich repeat extensin-like protein 3", "gene_name": "LRX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7W0-1", "protein_name": "SH3 domain-containing protein 3", "gene_name": "SH3P3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWF1-1", "protein_name": "SH3 domain-containing protein 2", "gene_name": "SH3P2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLP0-1", "protein_name": "65-kDa microtubule-associated protein 1", "gene_name": "MAP65-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SU08-1", "protein_name": "Auxilin-related protein 1", "gene_name": "AUXI1; AUXILIN-LIKE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C865", "url": "https://www.uniprot.org/uniprotkb/Q9C865" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11701884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of proteins interacting with Arabidopsis ACD11.", "journal": "J. Plant Physiol.", "date": "2009", "authors": "Petersen Nikolaj H T, Joensen Jan, McKinney Lea V, Brodersen Peter, Petersen Morten, Hofius Daniel, Mundy John", "reference": { "type": "PubMed", "id": "18845362", "url": "https://pubmed.ncbi.nlm.nih.gov/18845362" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C889-1", "protein_name": "PRA1 family protein F2", "gene_name": "PRA1F2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIC6-1", "protein_name": "PRA1 family protein F3", "gene_name": "PRA1F3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64587-1", "protein_name": "Accelerated cell death 11", "gene_name": "ACD11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFD5-1", "protein_name": "Binding partner of ACD11 1", "gene_name": "BPA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C889", "url": "https://www.uniprot.org/uniprotkb/Q9C889" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18845362", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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ortho-hydroxylation of feruloyl CoA by a 2-oxoglutarate-dependent dioxygenase in Arabidopsis thaliana.", "journal": "The Plant journal : for cell and molecular biology", "date": "2008-09", "authors": "Kai Kosuke, Mizutani Masaharu, Kawamura Naohiro, Yamamoto Ryotaro, Tamai Michiko, Yamaguchi Hikaru, Sakata Kanzo, Shimizu Bun-ichi", "reference": { "type": "PubMed", "id": "18547395", "url": "https://pubmed.ncbi.nlm.nih.gov/18547395" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C899-1", "protein_name": "Feruloyl CoA ortho-hydroxylase 2", "gene_name": "F6'H2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49499-1", "protein_name": "Caffeoyl-CoA O-methyltransferase 1", "gene_name": "CCOAOMT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LHN8-1", "protein_name": "Feruloyl CoA ortho-hydroxylase 1", "gene_name": "F6'H1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C899", "url": "https://www.uniprot.org/uniprotkb/Q9C899" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18547395", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases.", "journal": "Plant J.", "date": "2008", "authors": "Kraft Edward, Bostick Magnolia, Jacobsen Steven E, Callis Judy", "reference": { "type": "PubMed", "id": "18643997", "url": "https://pubmed.ncbi.nlm.nih.gov/18643997" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C8E1-1", "protein_name": "Putative E3 ubiquitin-protein ligase ORTHRUS 4", "gene_name": "ORTH4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVS2-1", "protein_name": "E3 ubiquitin-protein ligase ORTHRUS 3", "gene_name": "ORTH3; VIM5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VYZ0-1", "protein_name": "E3 ubiquitin-protein ligase ORTHRUS 2", "gene_name": "ORTH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKA7-1", "protein_name": "E3 ubiquitin-protein ligase ORTHRUS 1", "gene_name": "ORTH1", "tax_name": "Mouse-ear cress" }, { 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Biol.", "date": "1994", "authors": "Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K", "reference": { "type": "PubMed", "id": "8075396", "url": "https://pubmed.ncbi.nlm.nih.gov/8075396" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C8G5-1", "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 3.1", "gene_name": "OSCA3.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS03-1", "protein_name": "Allene oxide cyclase 1, chloroplastic", "gene_name": "AOC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94II3-1", "protein_name": "Probable methyltransferase PMT21", "gene_name": "ERD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48832-1", "protein_name": "Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic", "gene_name": "ERD7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P22953-1", "protein_name": "Heat shock 70 kDa protein 1", "gene_name": "HSC70-1; HSP70-1", "tax_name": 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Biophys. Acta", "date": "2001", "authors": "Wilson I B, Rendi\u0107 D, Freilinger A, Dumi\u0107 J, Altmann F, Mucha J, M\u00fcller S, Hauser M T", "reference": { "type": "PubMed", "id": "11420147", "url": "https://pubmed.ncbi.nlm.nih.gov/11420147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C8W3-1", "protein_name": "Alpha-(1,4)-fucosyltransferase", "gene_name": "FUT13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FX97-1", "protein_name": "Putative fucosyltransferase-like protein", "gene_name": "FUT12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJK1-1", "protein_name": "Glycoprotein 3-alpha-L-fucosyltransferase FUT11", "gene_name": "FUT11", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8W3", "url": "https://www.uniprot.org/uniprotkb/Q9C8W3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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"2002", "authors": "L\u00e9onard R, Costa G, Darrambide E, Lhernould S, Fleurat-Lessard P, Carlu\u00e9 M, Gomord V, Faye L, Maftah A", "reference": { "type": "PubMed", "id": "12070072", "url": "https://pubmed.ncbi.nlm.nih.gov/12070072" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C8W3-1", "protein_name": "Alpha-(1,4)-fucosyltransferase", "gene_name": "FUT13", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8W3", "url": "https://www.uniprot.org/uniprotkb/Q9C8W3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12070072", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biol.", "date": "2003", "authors": "Yap Mee-Ngan, Lee Ruey-Hua, Huang Yih-Jong, Liao Chao-Jan, Chen Shu-Chen Grace", "reference": { "type": "PubMed", "id": "12650614", "url": "https://pubmed.ncbi.nlm.nih.gov/12650614" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C8Y4-1", "protein_name": "Senescence-associated protein AAF, chloroplastic", "gene_name": "AAF", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8Y4", "url": "https://www.uniprot.org/uniprotkb/Q9C8Y4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12650614", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Genetic analysis of early flowering mutants in Arabidopsis defines a class of pleiotropic developmental regulator required for expression of the flowering-time switch flowering locus C.", "journal": "Genetics", "date": "2003", "authors": "Zhang Hua, Ransom Callista, Ludwig Philip, van Nocker Steven", "reference": { "type": "PubMed", "id": "12750345", "url": "https://pubmed.ncbi.nlm.nih.gov/12750345" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C950-1", "protein_name": "Protein RTF1 homolog", "gene_name": "VIP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B5X0I6-1", "protein_name": "Protein CTR9 homolog", "gene_name": "VIP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HQA1-1", "protein_name": "Protein PAF1 homolog", "gene_name": "VIP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZQ5-1", "protein_name": "WD repeat-containing protein VIP3", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glucosinolates are produced in trichomes of Arabidopsis thaliana.", "journal": "Front. Plant Sci.", "date": "2012", "authors": "Frerigmann Henning, B\u00f6ttcher Christoph, Baatout Dunja, Gigolashvili Tamara", "reference": { "type": "PubMed", "id": "23115560", "url": "https://pubmed.ncbi.nlm.nih.gov/23115560" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C9C8-1", "protein_name": "Transcription factor MYB122", "gene_name": "MYB122", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49782-1", "protein_name": "Transcription factor MYB51", "gene_name": "MYB51", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64399-1", "protein_name": "Transcription factor MYB34", "gene_name": "MYB34", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLR1-1", "protein_name": "Transcription factor MYB29", "gene_name": "MYB29", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SPG2-1", "protein_name": "Transcription factor MYB28", "gene_name": "MYB28", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue.", "journal": "Plant molecular biology", "date": "2007-07", "authors": "Egelund Jack, Obel Nicolai, Ulvskov Peter, Geshi Naomi, Pauly Markus, Bacic Antony, Petersen Bent Larsen", "reference": { "type": "PubMed", "id": "17401635", "url": "https://pubmed.ncbi.nlm.nih.gov/17401635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C9Q5-1", "protein_name": "Arabinosyltransferase RRA2", "gene_name": "RRA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9Q6-1", "protein_name": "Arabinosyltransferase RRA1", "gene_name": "RRA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C9Q5", 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